Citrus Sinensis ID: 042089
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.989 | 0.441 | 0.316 | 6e-55 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.976 | 0.434 | 0.311 | 6e-54 | |
| Q9FZ59 | 1088 | Leucine-rich repeat recep | no | no | 0.921 | 0.471 | 0.299 | 2e-50 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.775 | 0.380 | 0.330 | 1e-49 | |
| Q9M0G7 | 1013 | Leucine-rich repeat recep | no | no | 0.795 | 0.437 | 0.339 | 6e-49 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.929 | 0.441 | 0.326 | 1e-48 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.861 | 0.397 | 0.311 | 3e-48 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.861 | 0.397 | 0.312 | 3e-48 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.940 | 0.439 | 0.319 | 1e-47 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.791 | 0.386 | 0.346 | 5e-47 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 193/610 (31%), Positives = 291/610 (47%), Gaps = 59/610 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L + L L++N LEG +P L + + L VF + N L+G +P+ + L +LE L L++
Sbjct: 189 RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLAN 248
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLK-VIPS 119
N+ GE P S L S L+ L L+ +N L+ + L+ L L +L IP
Sbjct: 249 NSLTGEIP-SQLGEMSQLQYLSLM--ANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPE 305
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
+ L L L++N L G+ P + NNTNLE L LS SG + + K L+ L
Sbjct: 306 EFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQL 365
Query: 180 DISNNNLIGTLPQNM-----------------GTV------LQKLMLIDISKNNFEGNIP 216
D+SNN+L G++P+ + GT+ L L + + NN EG +P
Sbjct: 366 DLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
I +++L +L L N+FSG++ + C SL+ +D+ N+F G I P+ L +L
Sbjct: 426 KEISALRKLEVLFLYENRFSGEI-PQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNL 484
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336
L+L+ N G + A L N H L +LD+++N LSG IP G L+ L++ N L+GN+
Sbjct: 485 LHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNL 544
Query: 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIM------------------------HL 372
P + + R L + LS NRL G+I SS + L
Sbjct: 545 PDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRL 604
Query: 373 YLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432
L KN L+G+IP TL + EL LD+ N G IP Q+ +L + L N+L G IP
Sbjct: 605 RLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIP 664
Query: 433 IALCQLQKLRILDLSHNKLNGSIPS----CFANVLFWREGNGDLYGSGLDIYFQFGGLRS 488
L +L +L L LS N+ S+P+ C ++ +GN L GS G L
Sbjct: 665 PWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGN-SLNGSIPQEIGNLGALNV 723
Query: 489 IGTYYNS-TLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGE 547
+ N + L + + L++ + G + S +DLSYN TG+
Sbjct: 724 LNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783
Query: 548 IPSEIGELPK 557
IPS IG L K
Sbjct: 784 IPSTIGTLSK 793
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 183/588 (31%), Positives = 285/588 (48%), Gaps = 44/588 (7%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L L L L++N LEG +P + + T L +F + N+L+G+LP+ + L +L+ L L D
Sbjct: 190 RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR-FKTENWIPTFQLKVLQLPNCSLK-VIPS 119
N+F GE P S L + +++ L L + N L+ + L+ L L + +L VI
Sbjct: 250 NSFSGEIP-SQLGDLVSIQYLNL--IGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHE 306
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L+FL L+ N+L G+ P + NNT+L+ L LS SG + L+ L
Sbjct: 307 EFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLL 366
Query: 180 DISNNNLIGTLPQNM-----------------GTV------LQKLMLIDISKNNFEGNIP 216
D+SNN L G +P ++ GT+ L L + NN EG +P
Sbjct: 367 DLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
IG + +L ++ L N+FSG++ + C L+ +D N G I + L L
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEM-PVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTR 485
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336
L+L+ N G I A L N H + V+D+++N LSG IP G + L++ ++ N L+GN+
Sbjct: 486 LHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545
Query: 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
P + N + L + S N+ GSI+ SS + + +N G IP L +ST L L
Sbjct: 546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605
Query: 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
L N+F GRIP K SEL +L + N L G IP+ L +KL +DL++N L+G IP
Sbjct: 606 RLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP 665
Query: 457 SCFANVLFWRE---GNGDLYGSGLDIYFQFGGLRSI---GTYYNSTLDLWLSRDDYATLH 510
+ + E + GS F + ++ G N ++ + L
Sbjct: 666 TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIP-----QEIGNL- 719
Query: 511 QRAQVQFVTKNRYEFYNGSSLNYMSG---MDLSYNELTGEIPSEIGEL 555
Q + +N+ S++ +S + LS N LTGEIP EIG+L
Sbjct: 720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQL 767
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/605 (29%), Positives = 276/605 (45%), Gaps = 92/605 (15%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
L+L + L GQL + +L L D+S N SG LPS + N TSLEYL LS+N+F GE
Sbjct: 81 LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEV 140
Query: 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK------VIPSFLL 122
P + + NL L L + NNL IP +++L + + IP L
Sbjct: 141 P-DIFGSLQNLTFLYLDR--NNL----SGLIPASVGGLIELVDLRMSYNNLSGTIPELLG 193
Query: 123 HQYNLKFLDLSSNKLVGNFPT--WLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+ L++L L++NKL G+ P +L++N L L +SNNS G L L LD
Sbjct: 194 NCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKLVSLD 250
Query: 181 ISNNNLIGTLPQNMG--TVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
+S N+ G +P +G + L L+++ K N G IP S+G ++++ ++DLS N+ SG+
Sbjct: 251 LSFNDFQGGVPPEIGNCSSLHSLVMV---KCNLTGTIPSSMGMLRKVSVIDLSDNRLSGN 307
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
+ + C+SLE L +++N G I P L +L+ L L N +G+I G+ L
Sbjct: 308 I-PQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSL 366
Query: 299 VVLDISNNLLSGHIPCWIGNFSYLDVL--------------------------------- 325
+ + NN L+G +P + +L L
Sbjct: 367 TQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTG 426
Query: 326 ---------------LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIM 370
++ N L G IP I + LE + L +N+L G + F S+
Sbjct: 427 EIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLS 486
Query: 371 HLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430
++ L N+ G IP +L LLT+DL NK G IP ++ L +L L NYL+G
Sbjct: 487 YVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGP 546
Query: 431 IPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIG 490
+P L +L D+ N LNGSIPS F + W+ + + D F G +
Sbjct: 547 LPSQLSGCARLLYFDVGSNSLNGSIPSSFRS---WKSLSTLVLS---DNNF-LGAIPQFL 599
Query: 491 TYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPS 550
+ DL ++R+ + + V + RY G+DLS N TGEIP+
Sbjct: 600 AELDRLSDLRIARNAFGG-KIPSSVGLLKSLRY------------GLDLSANVFTGEIPT 646
Query: 551 EIGEL 555
+G L
Sbjct: 647 TLGAL 651
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Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 236/487 (48%), Gaps = 55/487 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L++L L L N L+G LP +S+ + L S N++ G +P+ L LE L LS+N
Sbjct: 209 LQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNN 268
Query: 63 NFQGEFPLSLLTNHSNLEVLRLL--KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
NF G P SL N S L +++L S+ +R +T NC
Sbjct: 269 NFSGTVPFSLFCNTS-LTIVQLGFNAFSDIVRPETT-------------ANC-------- 306
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+ L+ LDL N++ G FP WL N +L+ L +S N FSG + L L
Sbjct: 307 ---RTGLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELK 362
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
++NN+L G +P + L ++D N+ +G IP +G MK L +L L RN FSG +
Sbjct: 363 LANNSLTGEIPVEIKQC-GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVP 421
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
++ VN LE L++ ENN G M LT L L L N F+G + + N L
Sbjct: 422 SSMVN-LQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSF 480
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
L++S N SG IP +GN L L +SK ++ G +PV+++ ++++ L N G +
Sbjct: 481 LNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVV 540
Query: 361 A-SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419
F +L S+ ++ L N+ SG+IP T L++L L DN G IP +I S L V
Sbjct: 541 PEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEV 600
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLS------------------------HNKLNGSI 455
L LR N L G IP L +L +L++LDL HN L+G I
Sbjct: 601 LELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVI 660
Query: 456 PSCFANV 462
P F+ +
Sbjct: 661 PGSFSGL 667
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 243/480 (50%), Gaps = 37/480 (7%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
L +D+ +N+ G L ++ GL + S N LSGNL + NL SLE L L N FQ
Sbjct: 118 LKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQ 177
Query: 66 GEFPLSLLTNHSNLEVLRLLKVS-NNLRFKTEN---WIPTFQLKVLQLPNCSLKVIPSFL 121
G P S NL+ LR L +S NNL + + +P+ + +L + P F
Sbjct: 178 GSLPSSF----KNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFG 233
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+ +LK+LDL+ KL G P+ L + + LE L L N+F+G + L+ LD
Sbjct: 234 -NINSLKYLDLAIGKLSGEIPSELGKLKS-LETLLLYENNFTGTIPREIGSITTLKVLDF 291
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
S+N L G +P + T L+ L L+++ +N G+IP +I + +L +L+L N SG+L
Sbjct: 292 SDNALTGEIPMEI-TKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGEL-P 349
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
+ + + L++LDVS N+F G I T N L L L NN FTG+I A L LV +
Sbjct: 350 SDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRV 409
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361
+ NNLL+G IP G L L ++ N L G IP I++ L + S N++ S+
Sbjct: 410 RMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLP 469
Query: 362 S-------------------------FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
S F + S+ +L L N L+G IPS++ +L++L
Sbjct: 470 STILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSNTLTGTIPSSIASCEKLVSL 529
Query: 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
+LR+N G IP QI S L VL L N L G +P ++ L +L++S+NKL G +P
Sbjct: 530 NLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVP 589
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Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 185/566 (32%), Positives = 274/566 (48%), Gaps = 48/566 (8%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+LDL N L G++P +L L+ ++ N L G++P+ I N +SL L L DN
Sbjct: 215 LANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDN 274
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK------V 116
G+ P L NL L+ L++ N K + IP+ ++ QL + L
Sbjct: 275 QLTGKIPAEL----GNLVQLQALRIYKN---KLTSSIPSSLFRLTQLTHLGLSENHLVGP 327
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
I + +L+ L L SN G FP + N NL VL + N+ SG L L
Sbjct: 328 ISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNISGELPADLGLLTNL 386
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
R+L +N L G +P ++ L L+D+S N G IP G M L + + RN F+
Sbjct: 387 RNLSAHDNLLTGPIPSSISNC-TGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFT 444
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
G++ N C++LE L V++NN G + P L +LR L + N TG I + N
Sbjct: 445 GEIPDDIFN-CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK 503
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
L +L + +N +G IP + N + L L M N LEG IP ++ + + L +L LS N+
Sbjct: 504 DLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKF 563
Query: 357 FGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
G I A F L S+ +L LQ N +G IP++L + L T D+ DN G IP ++
Sbjct: 564 SGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASL 623
Query: 416 ELRVLLL--RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP----SCFANVLFWREGN 469
+ L L N L G IP L +L+ ++ +DLS+N +GSIP +C NV
Sbjct: 624 KNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQAC-KNVFTLDFSQ 682
Query: 470 GDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGS 529
+L G D FQ G+ I + L LSR+ ++ ++ F N
Sbjct: 683 NNLSGHIPDEVFQ--GMDMI-------ISLNLSRNSFSGEIPQS-----------FGN-- 720
Query: 530 SLNYMSGMDLSYNELTGEIPSEIGEL 555
+ ++ +DLS N LTGEIP + L
Sbjct: 721 -MTHLVSLDLSSNNLTGEIPESLANL 745
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 178/572 (31%), Positives = 273/572 (47%), Gaps = 92/572 (16%)
Query: 5 NLTELDLRENNLEG--QLPWRLS-DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L LDL NN+ G PW S L+ F + N+L+G++P + + +L YL LS
Sbjct: 186 SLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAGSIPEL--DFKNLSYLDLSA 243
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
NNF FP FK +CS
Sbjct: 244 NNFSTVFP----------------------SFK----------------DCS-------- 257
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL+ LDLSSNK G+ + L + L L L+NN F G++ PK+ + L++L +
Sbjct: 258 ----NLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYL 310
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
N+ G P + + + ++ +D+S NNF G +P S+GE L L+D+S N FSG L
Sbjct: 311 RGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPV 370
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS--HGLV 299
+++ ++++ + +S N F G + ++ NL +L L + +N+ TG I +G+ + L
Sbjct: 371 DTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLK 430
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
VL + NNL G IP + N S L L +S N+L G+IP + + +L+ L L N+L G
Sbjct: 431 VLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGE 490
Query: 360 IA-SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418
I + L ++ +L L N L+G IP++L T+L + L +N+ G IP + + S L
Sbjct: 491 IPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN---------------VL 463
+L L N + G IP L Q L LDL+ N LNGSIP V
Sbjct: 551 ILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVY 610
Query: 464 FWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRY 523
+G+ + +G+G +FGG+R LD +R + T N
Sbjct: 611 IKNDGSKECHGAG--NLLEFGGIR------QEQLDRISTRHPCNFTRVYRGITQPTFN-- 660
Query: 524 EFYNGSSLNYMSGMDLSYNELTGEIPSEIGEL 555
+NGS M +DLSYN+L G IP E+G +
Sbjct: 661 --HNGS----MIFLDLSYNKLEGSIPKELGAM 686
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 179/572 (31%), Positives = 272/572 (47%), Gaps = 92/572 (16%)
Query: 5 NLTELDLRENNLEG--QLPWRLS-DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L LDL NN+ G PW S L+ F I N+L+G++P + + +L YL LS
Sbjct: 186 SLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAGSIPEL--DFKNLSYLDLSA 243
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
NNF FP FK +CS
Sbjct: 244 NNFSTVFP----------------------SFK----------------DCS-------- 257
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL+ LDLSSNK G+ + L + L L L+NN F G++ PK+ + L++L +
Sbjct: 258 ----NLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYL 310
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
N+ G P + + + ++ +D+S NNF G +P S+GE L L+D+S N FSG L
Sbjct: 311 RGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPV 370
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS--HGLV 299
++ ++++ + +S N F G + ++ NL +L L + +N+ TG I +G+ + L
Sbjct: 371 DTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLK 430
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
VL + NNL G IP + N S L L +S N+L G+IP + + +L+ L L N+L G
Sbjct: 431 VLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGE 490
Query: 360 IA-SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418
I + L ++ +L L N L+G IP++L T+L + L +N+ G IP + + S L
Sbjct: 491 IPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN---------------VL 463
+L L N + G IP L Q L LDL+ N LNGSIP V
Sbjct: 551 ILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVY 610
Query: 464 FWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRY 523
+G+ + +G+G +FGG+R LD +R + T N
Sbjct: 611 IKNDGSKECHGAG--NLLEFGGIR------QEQLDRISTRHPCNFTRVYRGITQPTFN-- 660
Query: 524 EFYNGSSLNYMSGMDLSYNELTGEIPSEIGEL 555
+NGS M +DLSYN+L G IP E+G +
Sbjct: 661 --HNGS----MIFLDLSYNKLEGSIPKELGAM 686
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 183/572 (31%), Positives = 273/572 (47%), Gaps = 48/572 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KLK+L +LDL N L+ +P +L L + ++ S +L G +P + N SL+ L+LS
Sbjct: 232 KLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSF 291
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLK-VIPS 119
N+ G PL L S + +L N L +W+ ++ L L L N IP
Sbjct: 292 NSLSGPLPLEL----SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPH 347
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
+ LK L L+SN L G+ P L + + LE + LS N SG ++ L L
Sbjct: 348 EIEDCPMLKHLSLASNLLSGSIPRELCGSGS-LEAIDLSGNLLSGTIEEVFDGCSSLGEL 406
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
++NN + G++P+++ + LM +D+ NNF G IP S+ + L S N+ G L
Sbjct: 407 LLTNNQINGSIPEDLWKL--PLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYL 464
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
A + ASL+ L +S+N G I LT L L L N F GKI L + L
Sbjct: 465 PA-EIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLT 523
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN-FRQLE----------- 347
LD+ +N L G IP I + L L++S N+L G+IP + + F Q+E
Sbjct: 524 TLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHG 583
Query: 348 ILYLSENRLFGSIASFLNLSSIM-HLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406
I LS NRL G I L ++ + L N LSG+IP++L R T L LDL N G
Sbjct: 584 IFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGS 643
Query: 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWR 466
IP ++ +L+ L L N L G IP + L L L+L+ NKL+G +P+ N+
Sbjct: 644 IPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELT 703
Query: 467 EGNGDLYGSGLDIYFQ--FGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYE 524
+D+ F G L S + + L++ ++ +F + E
Sbjct: 704 H---------MDLSFNNLSGELSSELSTMEKLVGLYIEQN-----------KFTGEIPSE 743
Query: 525 FYNGSSLNYMSGMDLSYNELTGEIPSEIGELP 556
N + L Y +D+S N L+GEIP++I LP
Sbjct: 744 LGNLTQLEY---LDVSENLLSGEIPTKICGLP 772
|
Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 162/467 (34%), Positives = 232/467 (49%), Gaps = 26/467 (5%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
L LDL N L G +PW LS L L+ ++SNQL+G +P I+ + L+ L+L DN
Sbjct: 131 LKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLT 190
Query: 66 GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT-----FQLKVLQLPNCSLKV-IPS 119
G P L S LEV+R + N + IP+ L VL L S+ +PS
Sbjct: 191 GSIPTE-LGKLSGLEVIR---IGGNKEISGQ--IPSEIGDCSNLTVLGLAETSVSGNLPS 244
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG-----ILQLPKVKHD 174
L L+ L + + + G P+ L N + L L L NS SG I QL K++
Sbjct: 245 SLGKLKKLETLSIYTTMISGEIPSDL-GNCSELVDLFLYENSLSGSIPREIGQLTKLEQL 303
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
FL N+L+G +P+ +G L +ID+S N G+IP SIG + L +S NK
Sbjct: 304 FLWQ-----NSLVGGIPEEIGNC-SNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNK 357
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
FSG + T+++ C+SL L + +N G I LT+L + +N G I GL +
Sbjct: 358 FSGSI-PTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLAD 416
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
L LD+S N L+G IP + L LL+ N L G IP +I N L L L N
Sbjct: 417 CTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFN 476
Query: 355 RLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413
R+ G I S + +L I L N L G++P + +EL +DL +N G +P+ ++
Sbjct: 477 RITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSS 536
Query: 414 HSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460
S L+VL + N G+IP +L +L L L LS N +GSIP+
Sbjct: 537 LSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLG 583
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| 358345471 | 933 | Receptor kinase [Medicago truncatula] gi | 0.985 | 0.588 | 0.479 | 1e-124 | |
| 359476165 | 1464 | PREDICTED: LRR receptor-like serine/thre | 0.983 | 0.374 | 0.460 | 1e-120 | |
| 255553269 | 2793 | receptor-kinase, putative [Ricinus commu | 0.944 | 0.188 | 0.466 | 1e-118 | |
| 358345705 | 703 | Receptor protein kinase-like protein [Me | 0.935 | 0.741 | 0.475 | 1e-118 | |
| 357468869 | 703 | Receptor protein kinase-like protein [Me | 0.935 | 0.741 | 0.475 | 1e-118 | |
| 297842171 | 966 | leucine-rich repeat family protein [Arab | 0.983 | 0.567 | 0.458 | 1e-116 | |
| 15221162 | 965 | receptor like protein 15 [Arabidopsis th | 0.983 | 0.567 | 0.444 | 1e-116 | |
| 12324907 | 910 | putative disease resistance protein; 468 | 0.983 | 0.602 | 0.444 | 1e-116 | |
| 186495296 | 1000 | receptor like protein 13 [Arabidopsis th | 0.965 | 0.538 | 0.461 | 1e-114 | |
| 12323814 | 1068 | disease resistance protein, putative; 11 | 0.965 | 0.503 | 0.461 | 1e-114 |
| >gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/590 (47%), Positives = 365/590 (61%), Gaps = 41/590 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+KNL ELDL N + G P L +LT L+V D+SSN GN+PS I +L SLEYL L D
Sbjct: 181 MKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDT 240
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE---NWIPTFQLKVLQLPNCSLK---- 115
NF G F S L NHS LEV L +NNL +TE +W PTFQLKVLQL NC L
Sbjct: 241 NFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNSKRD 300
Query: 116 -VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
P+FLL+Q+ L+ LDLS NKL GNFP+W+++NNT LE L L NNSF+G L+LP KH
Sbjct: 301 GTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHG 360
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
L L ISNN + G L +++G + L +++SKN+FEG +P SIGEM+ + LDLS N
Sbjct: 361 LL-DLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNN 419
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
FSG+LS+ ++ SL L +S N+F+G + P NLT+L LYL NN F+G I+ G+ N
Sbjct: 420 FSGELSSHLISNLTSLRLLRLSHNSFHG-LVPLLSNLTRLNWLYLNNNSFSGVIEDGVSN 478
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
+ L LDISNN+LSG IP WIG F+ L VL +SKN L+G IP ++ N L L LSEN
Sbjct: 479 NSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDLSEN 538
Query: 355 RLFGSIA-SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413
L + F N + LYLQKNAL G IP + T+L +LDLRDN FFG IP IN+
Sbjct: 539 NLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWINR 598
Query: 414 HSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF--------- 464
S+LRVLLL GN L G IPI +C+L+ +RI+DLSHN +N +IP C N+ F
Sbjct: 599 LSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVEFQTTA 658
Query: 465 --WREGNGD--------LYGSGL--------DIYFQFGGLRSIGTYYNSTLDL-WLSRDD 505
R D YG+ DI+F G I +YNS+L L D+
Sbjct: 659 VGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDI--FYNSSLSLNHPIADE 716
Query: 506 YATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGEL 555
Y ++ +++F TK+ Y Y G++LN M+G+DLS N L+G IP EIGEL
Sbjct: 717 YMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGEL 766
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/565 (46%), Positives = 356/565 (63%), Gaps = 17/565 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLS 60
KLKNL ELDL +N EG + L +LT L+ D+S N+ SGNL S+ A L LE+L LS
Sbjct: 740 KLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLS 799
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN--WIPTFQLKVLQLPNCSLKV-- 116
N FQ P+S HS LEVL L+ +N L ++E+ W+P+FQLKV +L +C LK
Sbjct: 800 HNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLSSCILKTGS 859
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
IPSFL +Q++L+ +DLS++ L +FPTWLM+NNT LE L L NNS +G LP + F
Sbjct: 860 IPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFT 919
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
+DISNN L G +P N+ L LM +++S+N+FEG+IP S G M++L LDLS N F+
Sbjct: 920 SAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGMRKLLFLDLSNNLFT 978
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
G + GC SLEYL +S+N+ +G +FP NL LR L L +NHF+GKI L NS
Sbjct: 979 GGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKI-PDLSNSS 1037
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
GL L +S+N +SG +P WIGN S L L+M N LEG IPV+ + LE+L LS N L
Sbjct: 1038 GLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNL 1097
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416
GS+ S + S ++H++LQ+N L+G + RS +L TLD+R+N G IP I+ S
Sbjct: 1098 SGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSG 1157
Query: 417 LRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF---WREGNGDLY 473
L +LLL+GN+ QG+IP LCQL K+ ILDLS+N L+G IPSC + F +R G +
Sbjct: 1158 LSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSII 1217
Query: 474 GSGLDIYFQFGGLRSIGTYYNSTLDL-WLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLN 532
YF G S Y++ ++L ++ + Y + +A +F TKNR +FY G+ L
Sbjct: 1218 S-----YFPSPGFSSY-LYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLY 1271
Query: 533 YMSGMDLSYNELTGEIPSEIGELPK 557
M+G+DLS N+LTG IP EIG L +
Sbjct: 1272 SMTGIDLSSNKLTGAIPPEIGNLSQ 1296
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/559 (46%), Positives = 349/559 (62%), Gaps = 33/559 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
LK+L EL L N G LP LS+LT L+V D++SN+ SGN+ SV++ LTSL+YL LS N
Sbjct: 1210 LKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLFLSGN 1269
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE--NWIPTFQLKVLQLPNCSL----KV 116
F+G F S L NH LE+ L S L +TE W PTFQLKV+ LPNC+L +
Sbjct: 1270 KFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNLRTRR 1329
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
IPSFLL+Q++L+F+DLS N L+G FP+W++QNN+ LEV+ + NNSF+G QLP +H+ +
Sbjct: 1330 IPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYRHELI 1389
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
+L IS+N++ G +P+++G +L L +++S N FEGNIP SI +M+ L +LDLS N FS
Sbjct: 1390 -NLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSNNYFS 1448
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
G+L + ++ L L +S NNF G IFP MNL +L L + NN+F+GKI
Sbjct: 1449 GELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDFFYCP 1508
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
L VLDIS KN + G IP+Q+ N +EIL LSENR
Sbjct: 1509 RLSVLDIS------------------------KNKVAGVIPIQLCNLSSVEILDLSENRF 1544
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416
FG++ S N SS+ +L+LQKN L+G IP L RS+ L+ +DLR+NKF G IP I++ SE
Sbjct: 1545 FGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWISQLSE 1604
Query: 417 LRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSG 476
L VLLL GN L G IP LCQL+ L+I+DLSHN L GSIPSCF N+ F S
Sbjct: 1605 LHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNISFGSMVEESFSSSS 1664
Query: 477 LDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSG 536
+ + YY +TL+L L + QV+F+ K RY Y GS +N M+G
Sbjct: 1665 IGV--AMASHYDSYAYYKATLELDLPGLLSWSSSSEVQVEFIMKYRYNSYKGSVINLMAG 1722
Query: 537 MDLSYNELTGEIPSEIGEL 555
+DLS NEL GEIPSEIG++
Sbjct: 1723 IDLSRNELRGEIPSEIGDI 1741
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/564 (47%), Positives = 351/564 (62%), Gaps = 43/564 (7%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KLK+L ELD+ N QLP LS+LT L V ++S N SGN PS I+NLTSL YL L
Sbjct: 6 KLKDLVELDISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFG 65
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN--WIPTFQLKVLQLPNCSL----- 114
N QG F LS L NHSNL+ L + S +TE W+P FQLK L L NC+L
Sbjct: 66 NYMQGSFSLSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKG 125
Query: 115 KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
VIP+FL +QY+L +DLSSNKLVG FP W + H
Sbjct: 126 SVIPTFLSYQYSLILMDLSSNKLVGLFPRWFI--------------------------HS 159
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
+++LDIS N+L G LP+++G L + ++ S NNFEGNIP SIG+MK+L LDLS N
Sbjct: 160 SMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNH 219
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
FSG+L GC +L+YL +S N +G+I P + N + L+L NN+F+G ++ L N
Sbjct: 220 FSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGN 278
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
+ GLV L ISNN SG IP IG FSY+ VLLMS+N LEG IP++I+N L+IL LS+N
Sbjct: 279 NTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQN 338
Query: 355 RLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414
+L GSI L+ + LYLQKN LSG IPS L ++L LDLR+NKF G+IPH ++K
Sbjct: 339 KLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKL 398
Query: 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF-WREGNGDLY 473
SELRVLLL GN L+G+IPI LC+L+K+ I+DLS N LN SIPSCF N+ F R+ D
Sbjct: 399 SELRVLLLGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFRNMSFGMRQYVDDDD 458
Query: 474 GSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQ--VQFVTKNRYEFYNGSSL 531
G + G L +I +N++L + + ++ ++ Q V+F TK+ FY G L
Sbjct: 459 GPTFEFSIS-GYLPTIS--FNASLSI---QPPWSLFNEDLQFEVEFRTKHYEYFYKGKVL 512
Query: 532 NYMSGMDLSYNELTGEIPSEIGEL 555
M+G+DLS+N LTG IPS+IG L
Sbjct: 513 ENMTGLDLSWNNLTGLIPSQIGHL 536
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/564 (47%), Positives = 351/564 (62%), Gaps = 43/564 (7%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KLK+L ELD+ N QLP LS+LT L V ++S N SGN PS I+NLTSL YL L
Sbjct: 6 KLKDLVELDISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFG 65
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN--WIPTFQLKVLQLPNCSL----- 114
N QG F LS L NHSNL+ L + S +TE W+P FQLK L L NC+L
Sbjct: 66 NYMQGSFSLSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKG 125
Query: 115 KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
VIP+FL +QY+L +DLSSNKLVG FP W + H
Sbjct: 126 SVIPTFLSYQYSLILMDLSSNKLVGLFPRWFI--------------------------HS 159
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
+++LDIS N+L G LP+++G L + ++ S NNFEGNIP SIG+MK+L LDLS N
Sbjct: 160 SMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNH 219
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
FSG+L GC +L+YL +S N +G+I P + N + L+L NN+F+G ++ L N
Sbjct: 220 FSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGN 278
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
+ GLV L ISNN SG IP IG FSY+ VLLMS+N LEG IP++I+N L+IL LS+N
Sbjct: 279 NTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQN 338
Query: 355 RLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414
+L GSI L+ + LYLQKN LSG IPS L ++L LDLR+NKF G+IPH ++K
Sbjct: 339 KLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKL 398
Query: 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF-WREGNGDLY 473
SELRVLLL GN L+G+IPI LC+L+K+ I+DLS N LN SIPSCF N+ F R+ D
Sbjct: 399 SELRVLLLGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFRNMSFGMRQYVDDDD 458
Query: 474 GSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQ--VQFVTKNRYEFYNGSSL 531
G + G L +I +N++L + + ++ ++ Q V+F TK+ FY G L
Sbjct: 459 GPTFEFSIS-GYLPTIS--FNASLSI---QPPWSLFNEDLQFEVEFRTKHYEYFYKGKVL 512
Query: 532 NYMSGMDLSYNELTGEIPSEIGEL 555
M+G+DLS+N LTG IPS+IG L
Sbjct: 513 ENMTGLDLSWNNLTGLIPSQIGHL 536
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 260/567 (45%), Positives = 344/567 (60%), Gaps = 19/567 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+LKN ELDL +N L G P L+ LTGL+V D+SSNQL+G +PS + +L SLEYL L D
Sbjct: 245 ELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLSLFD 304
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSLKVIPSF 120
N+F+G F L N SNL VL+L S++L+ +E+ W P FQL V+ L +C+++ +P F
Sbjct: 305 NDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHF 364
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L+HQ +L+ +DLS+NK+ G P+WL+ NNT L+VL L NN F+ Q+PK HD L LD
Sbjct: 365 LIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFTS-FQIPKSAHDLL-FLD 422
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
S N P+N+G + L ++I KN+F+GN+P S+G MK L LDLS N F G L
Sbjct: 423 ASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLP 482
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ VNGC S+ L +S N G IFP NLT L GL++ NN FTGKI GL + L +
Sbjct: 483 RSFVNGCYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLEL 542
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
LD+SNN L+G IP WIG L LL+S N L+G IP + N L++L LS N L G I
Sbjct: 543 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGI 602
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+ + L LQ N LSG I TLL + E+ LDLR+N+F G IP IN + + +L
Sbjct: 603 PPHHDSRDGVVLLLQDNNLSGTIADTLLVNVEI--LDLRNNRFSGNIPEFINTQN-ISIL 659
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIY 480
LLRGN L G IP LC L +++LDLS+N+LNGSIPSC +N F Y I
Sbjct: 660 LLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNTSFGFGKECTSYDYDFGIS 719
Query: 481 FQ---FGGL---------RSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNG 528
F F G ++ G Y+ S L L DY Q +++F TK+RY+ Y G
Sbjct: 720 FPSDVFNGFSLHQDLSSNKNSGIYFKSLLMLDPFSMDYKAATQ-TKIEFATKHRYDAYMG 778
Query: 529 SSLNYMSGMDLSYNELTGEIPSEIGEL 555
+L + G+DLS NEL+GEIP E G L
Sbjct: 779 GNLKLLFGIDLSENELSGEIPVEFGGL 805
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/567 (44%), Positives = 350/567 (61%), Gaps = 19/567 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L N+ ELDL +N L G LP L+ LTGL+V D+SSN+L+G +PS + +L SLEYL L D
Sbjct: 242 ELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFD 301
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSLKVIPSF 120
N+F+G F L N SNL VL+L S++L+ +E+ W P FQL V+ L +C+++ +P F
Sbjct: 302 NDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHF 361
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
LLHQ +L+ +DLS N + G P+WL+ NNT L+VL L NN F+ Q+PK H+ L LD
Sbjct: 362 LLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPKSAHNLL-FLD 419
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+S N+ P+N+G + L ++ SKNNF+ N+P S+G M + +DLSRN F G+L
Sbjct: 420 VSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLP 479
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ VNGC S+ L +S N G IFP N T + GL++ NN FTGKI GL + L +
Sbjct: 480 RSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLEL 539
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
LD+SNN L+G IP WIG L LL+S N L+G+IP+ + N L++L LS N L G I
Sbjct: 540 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVI 599
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+ + + L LQ N LSG IP TLL + E+ LDLR+N+F G+IP IN + + +L
Sbjct: 600 PPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQN-ISIL 656
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYG------ 474
LLRGN G+IP LC L +++LDLS+N+LNG+IPSC +N F Y
Sbjct: 657 LLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGIS 716
Query: 475 ------SGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNG 528
+G ++ F ++ G Y+ S L L DY Q +++F TK+RY+ Y G
Sbjct: 717 FPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMG 775
Query: 529 SSLNYMSGMDLSYNELTGEIPSEIGEL 555
+L + GMDLS NEL+GEIP E G L
Sbjct: 776 GNLKLLFGMDLSENELSGEIPVEFGGL 802
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/567 (44%), Positives = 350/567 (61%), Gaps = 19/567 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L N+ ELDL +N L G LP L+ LTGL+V D+SSN+L+G +PS + +L SLEYL L D
Sbjct: 187 ELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFD 246
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSLKVIPSF 120
N+F+G F L N SNL VL+L S++L+ +E+ W P FQL V+ L +C+++ +P F
Sbjct: 247 NDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHF 306
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
LLHQ +L+ +DLS N + G P+WL+ NNT L+VL L NN F+ Q+PK H+ L LD
Sbjct: 307 LLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPKSAHNLL-FLD 364
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+S N+ P+N+G + L ++ SKNNF+ N+P S+G M + +DLSRN F G+L
Sbjct: 365 VSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLP 424
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ VNGC S+ L +S N G IFP N T + GL++ NN FTGKI GL + L +
Sbjct: 425 RSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLEL 484
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
LD+SNN L+G IP WIG L LL+S N L+G+IP+ + N L++L LS N L G I
Sbjct: 485 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVI 544
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+ + + L LQ N LSG IP TLL + E+ LDLR+N+F G+IP IN + + +L
Sbjct: 545 PPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQN-ISIL 601
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYG------ 474
LLRGN G+IP LC L +++LDLS+N+LNG+IPSC +N F Y
Sbjct: 602 LLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGIS 661
Query: 475 ------SGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNG 528
+G ++ F ++ G Y+ S L L DY Q +++F TK+RY+ Y G
Sbjct: 662 FPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMG 720
Query: 529 SSLNYMSGMDLSYNELTGEIPSEIGEL 555
+L + GMDLS NEL+GEIP E G L
Sbjct: 721 GNLKLLFGMDLSENELSGEIPVEFGGL 747
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/559 (46%), Positives = 346/559 (61%), Gaps = 21/559 (3%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
KN+ EL L N L GQ P L+ LTGL+V D+SSNQL+GN+PS +ANL SLEYL L NN
Sbjct: 258 KNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNN 317
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVIPSFLL 122
F+G F L LL N S L+VLRL SN+L + E +W P FQL V+ L +C+L+ +P FLL
Sbjct: 318 FEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLL 377
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
HQ +L +DLS N++ GNFP+WL++NNT LEVL L NNSF+ QLPK H+ L L++S
Sbjct: 378 HQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAHNLL-FLNVS 435
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
N QN G +L L+ ++++ N F+GN+P S+ MK + LDLS N+F G L
Sbjct: 436 VNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRR 495
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
+ GC +L L +S N G +FP N T+L + + NN FTG I G + L VLD
Sbjct: 496 FLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLD 555
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
ISNN L+G IP WIG L L +S N LEG IP + N L++L LS NRL G I
Sbjct: 556 ISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP 615
Query: 363 FLNLSSIMH---LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419
++SSI H L LQ N LSG IP TLL ++ LDLR+N+ G +P IN + + +
Sbjct: 616 --HVSSIYHGAVLLLQNNNLSGVIPDTLL--LNVIVLDLRNNRLSGNLPEFINTQN-ISI 670
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDI 479
LLLRGN G+IP C L +++LDLS+NK NGSIPSC +N F D Y D+
Sbjct: 671 LLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSY--RYDV 728
Query: 480 YFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQ---RAQVQFVTKNRYEFYNGSSLNYMSG 536
+FG + Y+ S L + D++ +++ + +++F TK+RY+ Y G +L + G
Sbjct: 729 PSRFGTAKD-PVYFESLLMI----DEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFG 783
Query: 537 MDLSYNELTGEIPSEIGEL 555
MDLS NEL+GEIP E+G L
Sbjct: 784 MDLSENELSGEIPVELGGL 802
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/559 (46%), Positives = 346/559 (61%), Gaps = 21/559 (3%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
KN+ EL L N L GQ P L+ LTGL+V D+SSNQL+GN+PS +ANL SLEYL L NN
Sbjct: 326 KNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNN 385
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVIPSFLL 122
F+G F L LL N S L+VLRL SN+L + E +W P FQL V+ L +C+L+ +P FLL
Sbjct: 386 FEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLL 445
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
HQ +L +DLS N++ GNFP+WL++NNT LEVL L NNSF+ QLPK H+ L L++S
Sbjct: 446 HQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAHNLL-FLNVS 503
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
N QN G +L L+ ++++ N F+GN+P S+ MK + LDLS N+F G L
Sbjct: 504 VNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRR 563
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
+ GC +L L +S N G +FP N T+L + + NN FTG I G + L VLD
Sbjct: 564 FLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLD 623
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
ISNN L+G IP WIG L L +S N LEG IP + N L++L LS NRL G I
Sbjct: 624 ISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP 683
Query: 363 FLNLSSIMH---LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419
++SSI H L LQ N LSG IP TLL ++ LDLR+N+ G +P IN + + +
Sbjct: 684 --HVSSIYHGAVLLLQNNNLSGVIPDTLL--LNVIVLDLRNNRLSGNLPEFINTQN-ISI 738
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDI 479
LLLRGN G+IP C L +++LDLS+NK NGSIPSC +N F D Y D+
Sbjct: 739 LLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSY--RYDV 796
Query: 480 YFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQ---RAQVQFVTKNRYEFYNGSSLNYMSG 536
+FG + Y+ S L + D++ +++ + +++F TK+RY+ Y G +L + G
Sbjct: 797 PSRFGTAKD-PVYFESLLMI----DEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFG 851
Query: 537 MDLSYNELTGEIPSEIGEL 555
MDLS NEL+GEIP E+G L
Sbjct: 852 MDLSENELSGEIPVELGGL 870
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.983 | 0.567 | 0.435 | 1.4e-116 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.965 | 0.538 | 0.449 | 6e-116 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.980 | 0.559 | 0.447 | 4.8e-114 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.982 | 0.505 | 0.436 | 1.1e-110 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.980 | 0.612 | 0.409 | 1.6e-98 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.971 | 0.578 | 0.408 | 2.6e-94 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.757 | 0.464 | 0.442 | 3.1e-85 | |
| TAIR|locus:2137296 | 811 | RLP46 "receptor like protein 4 | 0.809 | 0.556 | 0.331 | 1.6e-59 | |
| TAIR|locus:2091353 | 1016 | AT3G28040 [Arabidopsis thalian | 0.800 | 0.438 | 0.344 | 6.5e-57 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.960 | 0.428 | 0.329 | 4.9e-56 |
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1098 (391.6 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 247/567 (43%), Positives = 343/567 (60%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L N+ ELDL +N L G LP L+ LTGL+V D+SSN+L+G +PS + +L SLEYL L D
Sbjct: 242 ELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFD 301
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSLKVIPSF 120
N+F+G F L N SNL VL+L S++L+ +E+ W P FQL V+ L +C+++ +P F
Sbjct: 302 NDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHF 361
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
LLHQ +L+ +DLS N + G P+WL+ NNT L+VL L NN F+ Q+PK H+ L LD
Sbjct: 362 LLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSF-QIPKSAHNLL-FLD 419
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+S N+ P+N+G + L ++ SKNNF+ N+P S+G M + +DLSRN F G+L
Sbjct: 420 VSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLP 479
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ VNGC S+ L +S N G IFP N T + GL++ NN FTGKI GL + L +
Sbjct: 480 RSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLEL 539
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
LD+SNN L+G IP WIG L LL+S N L+G+IP+ + N L++L LS N L G I
Sbjct: 540 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVI 599
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRVL 420
+ + + L LQ N LSG IP N+F G+IP IN + + +L
Sbjct: 600 PPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEILDLRN--NRFSGKIPEFINIQN-ISIL 656
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFW--REGNGDLYGSGL- 477
LLRGN G+IP LC L +++LDLS+N+LNG+IPSC +N F +E Y G+
Sbjct: 657 LLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGIS 716
Query: 478 ---DIY--FQ----FGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNG 528
D++ F F ++ G Y+ S L L DY Q +++F TK+RY+ Y G
Sbjct: 717 FPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQ-TKIEFATKHRYDAYMG 775
Query: 529 SSLNYMSGMDLSYNELTGEIPSEIGEL 555
+L + GMDLS NEL+GEIP E G L
Sbjct: 776 GNLKLLFGMDLSENELSGEIPVEFGGL 802
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 6.0e-116, Sum P(2) = 6.0e-116
Identities = 251/559 (44%), Positives = 336/559 (60%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
KN+ EL L N L GQ P L+ LTGL+V D+SSNQL+GN+PS +ANL SLEYL L NN
Sbjct: 258 KNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNN 317
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVIPSFLL 122
F+G F L LL N S L+VLRL SN+L + E +W P FQL V+ L +C+L+ +P FLL
Sbjct: 318 FEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLL 377
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
HQ +L +DLS N++ GNFP+WL++NNT LEVL L NNSF+ QLPK H+ L L++S
Sbjct: 378 HQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF-QLPKSAHNLL-FLNVS 435
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
N QN G +L L+ ++++ N F+GN+P S+ MK + LDLS N+F G L
Sbjct: 436 VNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRR 495
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
+ GC +L L +S N G +FP N T+L + + NN FTG I G + L VLD
Sbjct: 496 FLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLD 555
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
ISNN L+G IP WIG L L +S N LEG IP + N L++L LS NRL G I
Sbjct: 556 ISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP 615
Query: 363 FLNLSSIMH---LYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRV 419
++SSI H L LQ N LSG IP N+ G +P IN + + +
Sbjct: 616 --HVSSIYHGAVLLLQNNNLSGVIPDTLLLNVIVLDLRN--NRLSGNLPEFINTQN-ISI 670
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDI 479
LLLRGN G+IP C L +++LDLS+NK NGSIPSC +N F D Y D+
Sbjct: 671 LLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYR--YDV 728
Query: 480 YFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQ---RAQVQFVTKNRYEFYNGSSLNYMSG 536
+FG + Y+ S L + D++ +++ + +++F TK+RY+ Y G +L + G
Sbjct: 729 PSRFGTAKD-PVYFESLLMI----DEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFG 783
Query: 537 MDLSYNELTGEIPSEIGEL 555
MDLS NEL+GEIP E+G L
Sbjct: 784 MDLSENELSGEIPVELGGL 802
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 4.8e-114, Sum P(2) = 4.8e-114
Identities = 251/561 (44%), Positives = 343/561 (61%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
++KNL +LDLR N EGQLP L +L L+V D+SSNQLSGNLP+ +L SLEYL LSD
Sbjct: 258 EMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSD 317
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVIPSF 120
NNF+G F L+ L N + L+V RL S L+ +TE NW+P FQL V LP CSL IP+F
Sbjct: 318 NNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNF 377
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L++Q NL+ +DLSSN+L G+ PTWL++NN L+VL+L NNSF+ I Q+P + H L+ LD
Sbjct: 378 LVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLD 435
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
S N++ G LP N+G VL +L+ ++ S N F+GN+P S+GEM ++ LDLS N FSG+L
Sbjct: 436 FSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELP 495
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ + GC SL L +S N+F G I P LT L L + NN FTG+I GL L +
Sbjct: 496 RSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSI 555
Query: 301 LDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
D SNN L+G I I + S+L +LL+S N LEG +P + L L LS N L G
Sbjct: 556 FDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGD 615
Query: 360 I-ASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELR 418
+ +S +N + ++L N+ +G +P NK G IP +N ++
Sbjct: 616 LPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYILDLRN--NKLSGSIPQFVNT-GKMI 672
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLD 478
LLLRGN L G IP LC L +R+LDLS NKLNG IP C N L G G + SG
Sbjct: 673 TLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL-NHLSTELGEG-IGLSGFS 730
Query: 479 IYFQFGGLRSIGTYYNST--LDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSG 536
FG + +Y ST +D ++ Y + + +++F K RY+ ++G +L+YM G
Sbjct: 731 QEISFGDSLQM-EFYRSTFLVDEFMLY--YDSTYMIVEIEFAAKQRYDSFSGGTLDYMYG 787
Query: 537 MDLSYNELTGEIPSEIGELPK 557
+DLS NEL+G IP+E+G+L K
Sbjct: 788 LDLSSNELSGVIPAELGDLSK 808
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 244/559 (43%), Positives = 328/559 (58%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTS-LEYLVLS 60
+L L ELDL N L LP+ L +LT L+ D+S+NQL+GNL S ++ L S LEYL L
Sbjct: 356 RLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLL 414
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSL-KVIP 118
DNNF G F + L N + L V +L ++ +TE+ W P FQLK+L L NCSL +
Sbjct: 415 DNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTML 474
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
FL+HQ +L F+DLS NKL G FPTWL++NNT L+ + LS NS + LQLP + H L+
Sbjct: 475 GFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTK-LQLPILVHG-LQV 532
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
LDIS+N + ++ +++G V L ++ S N+F+G IP SIGEMK L +LD+S N G
Sbjct: 533 LDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQ 592
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
L ++GC SL L +S N G IF + NLT L GL+L N+FTG ++ GLL S L
Sbjct: 593 LPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNL 652
Query: 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358
+LDIS+N SG +P WIG S L L MS N L+G P + +E++ +S N G
Sbjct: 653 TLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSG 711
Query: 359 SIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELR 418
SI +N S+ L LQ N +G +P N F G+I + I++ S+LR
Sbjct: 712 SIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLR 771
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLD 478
+LLLR N Q IP +CQL ++ +LDLSHN+ G IPSCF+ + F E N D
Sbjct: 772 ILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD 831
Query: 479 IYFQFGGLRSIG-TYYNSTLDLWLS-RDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSG 536
F F + + Y S L+L R+ Y V F+TK+RYE Y G L YM G
Sbjct: 832 --FDFSYITFLPHCQYGSHLNLDDGVRNGYQP-KPATVVDFLTKSRYEAYQGDILRYMHG 888
Query: 537 MDLSYNELTGEIPSEIGEL 555
+DLS NEL+GEIP EIG+L
Sbjct: 889 LDLSSNELSGEIPIEIGDL 907
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 230/562 (40%), Positives = 312/562 (55%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L+ L EL L N EG++P S + L+V D+SSN LSG +P I++ S+EYL L D
Sbjct: 176 RLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLD 235
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ--LKVLQLPNCSLKVIPS 119
N+F+G F L L+T + L+V +L S L+ N Q L + L +C+L IP
Sbjct: 236 NDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPG 295
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
FL +Q L+ +DLS+N L G FPTWL++NNT L+ L L NNSF L LP+ L+ L
Sbjct: 296 FLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRR-LQIL 353
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
D+S NN LP+++G +L L +++S N F GN+P S+ M+ + +DLS N FSG L
Sbjct: 354 DLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKL 413
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
GC SL +L +S N F G I + T L L + NN FTGKI LLN L
Sbjct: 414 PRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLS 473
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
V+D+SNNLL+G IP W+GNF +L+VL +S N L+G IP + N L +L LS N L GS
Sbjct: 474 VIDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGS 532
Query: 360 IASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELRV 419
+ + L L N L+G IP NK G IP + V
Sbjct: 533 LPLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRLLDLRN--NKLSGNIP-LFRSTPSISV 589
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDI 479
+LLR N L G+IP+ LC L +R+LD +HN+LN SIPSC N+ F G+G + D
Sbjct: 590 VLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSF---GSGGHSNADSDW 646
Query: 480 Y--FQFGGLRSIGT--YYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMS 535
Y I T YY S + DY+ + QV+F K RY+ Y +LN M
Sbjct: 647 YPASLLSNFMEIYTEVYYESLIVSDRFSLDYS-VDFNVQVEFAVKQRYDLYMRGTLNQMF 705
Query: 536 GMDLSYNELTGEIPSEIGELPK 557
G+DLS NEL+G IP E+G+L +
Sbjct: 706 GLDLSSNELSGNIPEELGDLKR 727
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 910 (325.4 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
Identities = 231/566 (40%), Positives = 304/566 (53%)
Query: 3 LKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NL L L +N+++G +P + L L+ D+ N G +P + +L L L LS
Sbjct: 220 LINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSS 279
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVS-NNL--RFKTENWIPTFQLK-VLQLPNCSLKVI 117
N G+ P S S+LE L L +S NN F LK V+ L CSL+ I
Sbjct: 280 NQLSGDLPSSF----SSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKI 335
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
PSFLL+Q L+ +DLSSN L GN PTWL+ NN LEVL+L NNSF+ I +P + H+ L+
Sbjct: 336 PSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQ 393
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
D S NN IG P M L L+ ++ S N F+G P SIGEMK + LDLS N FSG
Sbjct: 394 IFDFSANN-IGKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSG 452
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297
L + V GC S+ +L +S N F G P N L L + NN FTG I GL NS
Sbjct: 453 KLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTM 512
Query: 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLF 357
L +LD+SNN LSG IP W+ F YLD +L+S N LEG IP + L L LS N+
Sbjct: 513 LRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFS 572
Query: 358 GSIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSEL 417
G++ S ++ ++++L N +G IP NK G IP Q + +
Sbjct: 573 GALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQILDLRN--NKLSGSIP-QFDDTQSI 629
Query: 418 RVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGL 477
+LLL+GN L G IP LC L +R+LDLS NKLNG IPSC +N+ F R D +
Sbjct: 630 NILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQE-DAMALNI 688
Query: 478 DIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSS------L 531
F L Y ST + D +T +Q +++F K RY+ Y+G S L
Sbjct: 689 PPSFLQTSLEM--ELYKSTFLVDKIEVDRST-YQETEIKFAAKQRYDSYSGRSEFSEGIL 745
Query: 532 NYMSGMDLSYNELTGEIPSEIGELPK 557
M GMDLS NEL+G IP+E+G+L K
Sbjct: 746 RLMYGMDLSNNELSGVIPTELGDLLK 771
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| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 192/434 (44%), Positives = 253/434 (58%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
++KNL ELDLR N GQLP +L L+ D+SSNQL+GN+P ++L SLEYL LSD
Sbjct: 218 EMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSD 277
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-WIPTFQLKVLQLPNCSLKVIPSF 120
N+F+G F L+ LTN + L+V + ++ K E+ W P FQL VL L CSL+ IP+F
Sbjct: 278 NSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNF 337
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L++Q NL +DLS N++ G PTWL++NN LEVL+L NNSF+ I Q+P H+ L+ LD
Sbjct: 338 LMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLD 395
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
S NN+ G P N G VL L+ ++ S N F+GN P S+GEM + LDLS N SG+L
Sbjct: 396 FSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELP 455
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ V+ C SL L +S N F GH P N T L L + NN FTGKI GLL L +
Sbjct: 456 QSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCI 515
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP--VQINNFRQLEILYLSENRLFG 358
LD+SNN L G +P + F YL+ L +S N L G +P V ++N +L+L N G
Sbjct: 516 LDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDN-----VLFLHNNNFTG 570
Query: 359 SIASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELR 418
I L SI L L+ N LSG IP N G IP + + S++R
Sbjct: 571 PIPDTF-LGSIQILDLRNNKLSGNIPQFVDTQDISFLLLRG-NSLTGYIPSTLCEFSKMR 628
Query: 419 VLLLRGNYLQGEIP 432
+L L N L G IP
Sbjct: 629 LLDLSDNKLNGFIP 642
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| TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 158/476 (33%), Positives = 253/476 (53%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L L +DL+ N L ++P + +L L +S N+LSG +PS I NL +LE L L +
Sbjct: 224 RLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLEN 283
Query: 62 NN-FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI-PTFQLKVLQLPNCSLKV-IP 118
NN GE P + L L+VLRL + +N L++ ++ P F+L L L +C L+ IP
Sbjct: 284 NNGLSGEIPAAWLFGLQKLKVLRL-EGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIP 342
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L +Q L +LDLS N+L G FP WL + + + LS+N +G L + L +
Sbjct: 343 DWLKNQTALVYLDLSINRLEGRFPKWLA--DLKIRNITLSDNRLTGSLPPNLFQRPSLYY 400
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
L +S NN G +P +G ++M++ +S+NNF G++P SI ++ L LLDLS+N+ SG+
Sbjct: 401 LVLSRNNFSGQIPDTIGE--SQVMVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGE 458
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMN-LTQLRGLYLKNNHFTGKIKAGLLNSHG 297
+ LE+LD+S N F G + P Y T + L + N+F+G+ N
Sbjct: 459 FPRFRPE--SYLEWLDISSNEFSGDV-PAYFGGSTSM--LLMSQNNFSGEFPQNFRNLSY 513
Query: 298 LVVLDISNNLLSGHIPCWIGNFSY-LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
L+ LD+ +N +SG + I S ++VL + N L+G+IP I+N L++L LSEN L
Sbjct: 514 LIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNL 573
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQ--IPXXXXXXXXXXXXXXXXNKFFGRIPH----- 409
G + S L + M + +A++ + F + +
Sbjct: 574 DGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIESEDIFSLVVNWKNSK 633
Query: 410 QI--NKHSELRVLL-LRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462
Q+ +++ L LL L N L GEIP +L L+ L++L+LS+N+ +G IP F ++
Sbjct: 634 QVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDL 689
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| TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 158/458 (34%), Positives = 230/458 (50%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVLSDNN 63
+L +LDL NNL GQ+P L +T L+ D++ N SG L + N +SL YL LS N+
Sbjct: 125 HLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNH 184
Query: 64 FQGEFPLSLLTNHSNLEVLRLLK--VSNNLRFKTENWIPTFQLKVLQLPNCSLK-VIPSF 120
+G+ P S L S L L L + S N F + W +L+ L L + SL IP
Sbjct: 185 LEGQIP-STLFRCSVLNSLNLSRNRFSGNPSFVSGIW-RLERLRALDLSSNSLSGSIPLG 242
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+L +NLK L L N+ G P+ + +L + LS+N FSG L K L H D
Sbjct: 243 ILSLHNLKELQLQRNQFSGALPSDIGLC-PHLNRVDLSSNHFSGELPRTLQKLKSLNHFD 301
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+SNN L G P +G + L+ +D S N G +P SI ++ L L+LS NK SG++
Sbjct: 302 VSNNLLSGDFPPWIGD-MTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVP 360
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLV 299
S+ C L + + N+F G+I + +L L+ + N TG I G L+
Sbjct: 361 E-SLESCKELMIVQLKGNDFSGNIPDGFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLI 418
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
LD+S+N L+G IP +G F ++ L +S NH +P +I + L +L L + L GS
Sbjct: 419 RLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGS 478
Query: 360 I-ASFLNLSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKHSELR 418
+ A S+ L L N+L+G IP N G IP ++ EL+
Sbjct: 479 VPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELK 538
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
+L L N L GEIP L LQ L ++++S N+L G +P
Sbjct: 539 ILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLP 576
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| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 4.9e-56, P = 4.9e-56
Identities = 189/574 (32%), Positives = 280/574 (48%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
++ L L L N L+G +P L+DL L+ D+S+N L+G +P N++ L LVL++
Sbjct: 261 EMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLK-VIPS 119
N+ G P S+ +N++NLE L L + E + Q LK L L N SL IP
Sbjct: 321 NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVE--LSKCQSLKQLDLSNNSLAGSIPE 378
Query: 120 FLLHQYNLKFLDLSSNKLVGNF-PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
L L L L +N L G P+ + N TNL+ L L +N+ G +LPK + LR
Sbjct: 379 ALFELVELTDLYLHNNTLEGTLSPS--ISNLTNLQWLVLYHNNLEG--KLPK-EISALRK 433
Query: 179 LDIS---NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
L++ N G +PQ +G L +ID+ N+FEG IP SIG +KEL LL L +N+
Sbjct: 434 LEVLFLYENRFSGEIPQEIGNCTS-LKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNEL 492
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
G L A S+ C L LD+++N G I ++ L L L L NN G + L++
Sbjct: 493 VGGLPA-SLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISL 551
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
L +++S+N L+G I G+ SYL ++ N E IP+++ N + L+ L L +N+
Sbjct: 552 RNLTRINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQ 610
Query: 356 LFGSIASFLN-LSSIMHLYLQKNALSGQIPXXXXXXXXXXXXXXXXNKFFGRIPHQINKH 414
L G I L + + L + NAL+G IP N G IP + K
Sbjct: 611 LTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKL 670
Query: 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYG 474
S+L L L N +P L KL +L L N LNGSIP N+ G L
Sbjct: 671 SQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNL-------GALNV 723
Query: 475 SGLDIYFQFGGL--RSIGTYYNSTLDLWLSRDDYA-----TLHQRAQVQFVTKNRYEFYN 527
LD QF G +++G + +L LSR+ + Q +Q Y +
Sbjct: 724 LNLDKN-QFSGSLPQAMGKL-SKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFT 781
Query: 528 GS------SLNYMSGMDLSYNELTGEIPSEIGEL 555
G +L+ + +DLS+N+LTGE+P +G++
Sbjct: 782 GDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00032745001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (749 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 557 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-44 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-33 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-20 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-18 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-10 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-07 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-52
Identities = 147/456 (32%), Positives = 233/456 (51%), Gaps = 34/456 (7%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+L LDL N L G++P L++LT L+ ++SNQL G +P + + SL+++ L NN
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224
Query: 65 QGEFPLSL--LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
GE P + LT+ ++L++ V NNL IPS L
Sbjct: 225 SGEIPYEIGGLTSLNHLDL-----VYNNLTGP----------------------IPSSLG 257
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ NL++L L NKL G P + + L L LS+NS SG + ++ L L +
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
+NN G +P + T L +L ++ + N F G IP ++G+ L +LDLS N +G++
Sbjct: 317 SNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
+ +L L + N+ G I + LR + L++N F+G++ + + LD
Sbjct: 376 LCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI-A 361
ISNN L G I + L +L +++N G +P ++LE L LS N+ G++
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPR 493
Query: 362 SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLL 421
+LS +M L L +N LSG+IP L +L++LDL N+ G+IP ++ L L
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553
Query: 422 LRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
L N L GEIP L ++ L +++SHN L+GS+PS
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 7e-51
Identities = 169/553 (30%), Positives = 253/553 (45%), Gaps = 78/553 (14%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLT-SLEYLVLSDNNF 64
+ +DL N+ G++ + L ++ ++S+NQLSG +P I + SL YL LS+NNF
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
G P + NLE L L SNN+ E IP+ +
Sbjct: 131 TGSIPRGSI---PNLETLDL---SNNM-LSGE--------------------IPNDIGSF 163
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNN 184
+LK LDL N LVG P L N T+LE L L++N G + + L+ + + N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222
Query: 185 NLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV 244
NL G +P +G L L +D+ NN G IP S+G +K L L L +NK SG + S+
Sbjct: 223 NLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSI 280
Query: 245 NGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDIS 304
L LD+S+N+ G I + L L L+L +N+FTGKI L + L VL +
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340
Query: 305 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL 364
+N SG IP +G + L VL +S N+L G IP + + L L L N L G I L
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400
Query: 365 NL-SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423
S+ + LQ N+ SG++PS + + LD+ +N GRI + L++L L
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460
Query: 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQF 483
N G +P ++L LDLS N+ +G++P +
Sbjct: 461 RNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPR------------------------KL 495
Query: 484 GGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNE 543
G L + + L LS + + SS + +DLS+N+
Sbjct: 496 GSLSEL-------MQLKLSENKLSGEIPDEL--------------SSCKKLVSLDLSHNQ 534
Query: 544 LTGEIPSEIGELP 556
L+G+IP+ E+P
Sbjct: 535 LSGQIPASFSEMP 547
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 8e-51
Identities = 168/486 (34%), Positives = 233/486 (47%), Gaps = 59/486 (12%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L + ++L N L G +P +F SS SL YL LS+
Sbjct: 91 RLPYIQTINLSNNQLSGPIPD--------DIFTTSS---------------SLRYLNLSN 127
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNN-LRFKTENWIPTF-QLKVLQL-PNCSLKVIP 118
NNF G P + NLE L L SNN L + N I +F LKVL L N + IP
Sbjct: 128 NNFTGSIPRGSI---PNLETLDL---SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+ L + +L+FL L+SN+LVG P L Q +L+ + L N+ SG + L H
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
LD+ NNL G +P ++G L+ L + + +N G IP SI +++L LDLS N SG+
Sbjct: 241 LDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
+ V +LE L + NNF G I +L +L+ L L +N F+G+I L + L
Sbjct: 300 IPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358
Query: 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358
VLD+S N L+G IP + + L L++ N LEG IP + R L + L +N G
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418
Query: 359 SIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR----------- 406
+ S F L + L + N L G+I S L L L NKFFG
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE 478
Query: 407 ------------IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454
+P ++ SEL L L N L GEIP L +KL LDLSHN+L+G
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538
Query: 455 IPSCFA 460
IP+ F+
Sbjct: 539 IPASFS 544
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 6e-44
Identities = 113/332 (34%), Positives = 173/332 (52%), Gaps = 5/332 (1%)
Query: 127 LKFL-DLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
LK+L + +S+ V + N++ + + LS + SG + + +++ +++SNN
Sbjct: 45 LKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
L G +P ++ T L +++S NNF G+IP G + L LDLS N SG++ +
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIG 161
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
+SL+ LD+ N G I + NLT L L L +N G+I L L + +
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA-SFL 364
N LSG IP IG + L+ L + N+L G IP + N + L+ L+L +N+L G I S
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281
Query: 365 NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424
+L ++ L L N+LSG+IP +++ L L L N F G+IP + L+VL L
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
N GEIP L + L +LDLS N L G IP
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 9e-33
Identities = 113/362 (31%), Positives = 151/362 (41%), Gaps = 77/362 (21%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
++L+NL L L NN G++P L+ L L+V + SN+ SG +P + +L L LS
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
NN GE P L CS
Sbjct: 365 TNNLTGEIPEGL---------------------------------------CS------- 378
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
NL L L SN L G P L + L +RL +NSFS
Sbjct: 379 ---SGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFS----------------- 417
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
G LP T L + +DIS NN +G I +M L +L L+RNKF G L
Sbjct: 418 -------GELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ G LE LD+S N F G + +L++L L L N +G+I L + LV
Sbjct: 470 DSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
LD+S+N LSG IP L L +S+N L G IP + N L + +S N L GS+
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587
Query: 361 AS 362
S
Sbjct: 588 PS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-20
Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 12/245 (4%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
K NLT LDL NNL G++P L L + SN L G +P + SL + L D
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNL---RFKTENW-IPTFQLKVLQLPNCSLKVI 117
N+F GE P + + L ++ L +SNN R + W +P+ Q+ L +
Sbjct: 414 NSFSGELP----SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
SF L+ LDLS N+ G P L + + L L+LS N SG + L
Sbjct: 470 DSF--GSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
LD+S+N L G +P + + L +D+S+N G IP ++G ++ L +++S N G
Sbjct: 527 SLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
Query: 238 DLSAT 242
L +T
Sbjct: 586 SLPST 590
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 3e-18
Identities = 81/267 (30%), Positives = 109/267 (40%), Gaps = 75/267 (28%)
Query: 294 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353
NS +V +D+S +SG I I Y+ + +S N L G IP I
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI------------- 113
Query: 354 NRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413
F SS+ +L L N +G IP + + E TLDL +N G IP+ I
Sbjct: 114 ---------FTTSSSLRYLNLSNNNFTGSIPRGSIPNLE--TLDLSNNMLSGEIPNDIGS 162
Query: 414 HSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV--LFW-REGNG 470
S L+VL L GN L G+IP +L L L L L+ N+L G IP + L W G
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222
Query: 471 DLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSS 530
+L G +I ++ GGL +S
Sbjct: 223 NLSG---EIPYEIGGL------------------------------------------TS 237
Query: 531 LNYMSGMDLSYNELTGEIPSEIGELPK 557
LN++ DL YN LTG IPS +G L
Sbjct: 238 LNHL---DLVYNNLTGPIPSSLGNLKN 261
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL++L ++L N++ G +P L +T L+V D+S N +G++P + LTSL L L+
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 62 NNFQGEFPLSL 72
N+ G P +L
Sbjct: 500 NSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 64/217 (29%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 341 NNFRQLEILYLSENRLFGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLR-STELLTLDL 398
NN ++ + LS + G I ++ L I + L N LSG IP + S+ L L+L
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 399 RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSC 458
+N F G IP L L L N L GEIP + L++LDL N L G IP+
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183
Query: 459 FANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFV 518
N L+ ++ TL A Q V
Sbjct: 184 LTN---------------------------------------LTSLEFLTL---ASNQLV 201
Query: 519 TKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGEL 555
+ E SL ++ L YN L+GEIP EIG L
Sbjct: 202 GQIPRELGQMKSLKWIY---LGYNNLSGEIPYEIGGL 235
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 372 LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431
L L L G IP+ + + L +++L N G IP + + L VL L N G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 432 PIALCQLQKLRILDLSHNKLNGSIPS 457
P +L QL LRIL+L+ N L+G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
F+ L + N L G +P ++ + L+ L I++S N+ GNIP S+G + L +LDLS N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHI 264
F+G + S+ SL L+++ N+ G +
Sbjct: 478 FNGSIPE-SLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALS 380
++D L + L G IP I+ R L+ + LS N +
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-----------------------R 455
Query: 381 GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435
G IP +L T L LDL N F G IP + + + LR+L L GN L G +P AL
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 155 LRLSNNSFSGIL--QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
L L N G + + K++H L+ +++S N++ G +P ++G++ L ++D+S N+F
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFN 479
Query: 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
G+IP S+G++ L +L+L+ N SG + A
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 83/298 (27%), Positives = 121/298 (40%), Gaps = 13/298 (4%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83
S L+ L D+ S +L L L L N + +S L +NL L
Sbjct: 63 PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122
Query: 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPT 143
L + + LK L L + ++ +PS L + NLK LDLS N L
Sbjct: 123 LDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--P 179
Query: 144 WLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML 203
L+ N +NL L LS N S + ++ L LD+SNN++I L ++ K +
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSA-LEELDLSNNSII-ELLSSLSN--LKNLS 235
Query: 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263
NN ++P SIG + L LDLS N+ S S +S+ +L LD+S N+
Sbjct: 236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSNA 292
Query: 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321
+ L L L N T K LNS L+ +I +N + S
Sbjct: 293 LPLI--ALLLLLLELLLNLLLTLKALELKLNS-ILLNNNILSNGETSSPEALSILESL 347
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 76/306 (24%), Positives = 115/306 (37%), Gaps = 54/306 (17%)
Query: 2 KLKNLTELDLRENNLEG----QLPWRLSDLTGLKVFDISSNQLSGNLPSVIA------NL 51
KL L L L N L L L LK +S N+ + +
Sbjct: 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80
Query: 52 TSLEYLVLSDNNFQGEFP--LSLLTNHSNLEVLRLLKVSNN------LRFKTENWI-PTF 102
L+ L LSDN + L L S+L+ L+L +NN LR +
Sbjct: 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL---NNNGLGDRGLRLLAKGLKDLPP 137
Query: 103 QLKVLQLPNCSLKVIPSF-----LLHQYNLKFLDLSSNKLVGNFPTWL---MQNNTNLEV 154
L+ L L L+ L +LK L+L++N + L ++ N NLEV
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197
Query: 155 LRLSNNSF--------SGILQLPKVKHDFLRHLDISNNNL----IGTLPQNMGTVLQKLM 202
L L+NN + L K L L++ +NNL L + + L+
Sbjct: 198 LDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNLTDAGAAALASALLSPNISLL 253
Query: 203 LIDISKNNFE----GNIPYSIGEMKELFLLDLSRNKFS---GDLSATSVNG-CASLEYLD 254
+ +S N+ ++ + E + L LDL NKF L A S+ LE L
Sbjct: 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313
Query: 255 VSENNF 260
V +++F
Sbjct: 314 VKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 9 LDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEF 68
L L L G +P +S L L+ ++S N + GN+P + ++TSLE L LS N+F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 69 PLSLLTNHSNLEVLRLLKVSNN 90
P SL L LR+L ++ N
Sbjct: 483 PESL----GQLTSLRILNLNGN 500
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
GL L N G I + L +++S N + G+IP +G+ + L+VL +S N G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 336 IPVQINNFRQLEILYLSENRLFGSIASFL 364
IP + L IL L+ N L G + + L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 253 LDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI 312
L + G I L L+ + L N G I L + L VLD+S N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 313 PCWIGNFSYLDVLLMSKNHLEGNIP 337
P +G + L +L ++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 15/247 (6%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
++L NLT LDL NN+ P + LK D+S N++ +LPS + NL +L+ L LS
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPS 119
N+ L SNL L L +S N I L+ L L N S+ + S
Sbjct: 172 FNDLS-----DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS 226
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L + NL L+LS+NKL + P + N +NLE L LSNN S I L + + LR L
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESI-GNLSNLETLDLSNNQISSISSLGSLTN--LREL 282
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
D+S N+L LP +L +L+++ + L ++ N +
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLT----LKALELKLNSILLNNNILSNGETSSP 338
Query: 240 SATSVNG 246
A S+
Sbjct: 339 EALSILE 345
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 77/273 (28%), Positives = 115/273 (42%), Gaps = 18/273 (6%)
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISK 208
N + L L +S S +L L + + LD S N L L +D++
Sbjct: 53 NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENL----------LNLLPLPSLDLNL 102
Query: 209 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268
N NI + E+ L LDL N + D+ ++L+ LD+S+N +
Sbjct: 103 NRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPL 159
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
NL L+ L L N + + L N L LD+S N +S +P I S L+ L +S
Sbjct: 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL 388
N + + ++N + L L LS N+L S NLS++ L L N +S S+L
Sbjct: 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLG 274
Query: 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLL 421
T L LDL N +P L +LL
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NL LDL N+L LP LS+L+ L D+S N++S +LP I L++LE L LS+N
Sbjct: 162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT-FQLKVLQLPNCSLKVIPSFL 121
+ + LL++ SNL+ L L++SNN I L+ L L N + I S
Sbjct: 220 S-----IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG 274
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL+ LDLS N L P L +L + L+ ++K + + +
Sbjct: 275 SLT-NLRELDLSGNSLSNALP-----LIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328
Query: 182 SNNNLIGTLPQNMGTVLQKLML 203
+N + P+ + + L
Sbjct: 329 ILSNGETSSPEALSILESLNNL 350
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 51/233 (21%), Positives = 80/233 (34%), Gaps = 48/233 (20%)
Query: 103 QLKVLQLPNCSL-----KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWL-----MQNNTNL 152
L+VL+L +L K + S L Q +LK L LS N+ + L
Sbjct: 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83
Query: 153 EVLRLSNNSFSGILQ--LPKVKHDF-LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
+ L LS+N+ L + L+ L ++NN L + + L+ L
Sbjct: 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP------ 137
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLS-----ATSVNGCASLEYLDVSENNFYG-- 262
L L L RN+ G A N L+ L+++ N
Sbjct: 138 --------------ALEKLVLGRNRLEGASCEALAKALRANR--DLKELNLANNGIGDAG 181
Query: 263 --HIFPTYMNLTQLRGLYLKNNHFT----GKIKAGLLNSHGLVVLDISNNLLS 309
+ L L L NN T + L + L VL++ +N L+
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 42/270 (15%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS-- 60
L L +DLR + ++P LS T L+ +S LPS I L LE L +S
Sbjct: 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
+N L +L NL+ L L +S R K+ I T + L L +++ PS
Sbjct: 692 EN-------LEILPTGINLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSN 743
Query: 121 LLHQ--YNLKFLDLSSNKLVGNF----PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
L + L ++ S KL P M + + L L LS+ +++LP +
Sbjct: 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS-LTRLFLSDI--PSLVELPSSIQN 800
Query: 175 F--LRHLDISNNNLIGTLPQNMGTVLQKLMLI------------DISKNNFEGNIPYSIG 220
L HL+I N + TLP G L+ L + DIS N + N+ +
Sbjct: 801 LHKLEHLEIENCINLETLPT--GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASL 250
E ++ S LS +NGC +L
Sbjct: 859 EEVPWWIEKFSN------LSFLDMNGCNNL 882
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 24/60 (40%), Positives = 27/60 (45%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
NL LDL N L L LKV D+S N L+ P + L SL L LS NN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 107 LQLPNCSLK-VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165
L L N L+ IP+ + +L+ ++LS N + GN P L + T+LEVL LS NSF+G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMG 195
+ + LR L+++ N+L G +P +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.78 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.63 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.6 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.17 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.14 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.14 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.11 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.1 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.03 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.99 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.98 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.78 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.77 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.75 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.65 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.63 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.55 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.47 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.21 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.19 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.13 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.07 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.93 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.86 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.85 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.85 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.84 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.81 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.63 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.63 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.44 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.44 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.32 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.28 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.18 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.96 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.69 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.67 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.49 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.3 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.34 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.14 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.75 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.41 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.41 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.48 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.48 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.82 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 84.32 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 81.48 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 80.21 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=523.37 Aligned_cols=451 Identities=34% Similarity=0.480 Sum_probs=287.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
.+++.|+|++|.++|.+|..+..+++|++|+|++|+++|.+|..+. .+++|++|+|++|.++|.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 3566777777777777777777777777777777777766666544 677777777777777666663 345667777
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
++++|.+.+..+. .+..+.+|++|++++|.+ +.+|..+.++++|++|++++|.+++.+|..+. ++++|+.|++++|.
T Consensus 146 ~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~ 223 (968)
T PLN00113 146 DLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNN 223 (968)
T ss_pred ECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCc
Confidence 7776666555544 245566677777776666 56666666666777777777766666666553 66667777776666
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
+.+..+..+..+++|++|++++|.+++.+|..+. .+++|+.|++++|.+.+.+|.++.++++|++|++++|.+.+.+|.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 6665333345666666666666666666666664 366666666666666666666666666666666666666655554
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
.+ ..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|.+++.+++
T Consensus 303 ~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 LV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 43 45666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ .++.|+.|++++|.+++.+|..+..+++|++|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 6666666666666666666666666666666666666555444 556666666666666666665555556666666666
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
|++.+.+|..++ .++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.++
T Consensus 462 n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 462 NKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 665555555442 3455555666665555555555555555556666665555555555443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=523.96 Aligned_cols=455 Identities=31% Similarity=0.451 Sum_probs=422.7
Q ss_pred CCCCcCEEeCCCCCCcccCCccCC-CCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCc
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLS-DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLE 80 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~ 80 (557)
.+++|++|+|++|.++|.+|..+. .+++|++|+|++|+++|.+|. +.+++|++|+|++|.+++.+|. .++++++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCC
Confidence 578999999999999999998765 999999999999999999886 5689999999999999999995 489999999
Q ss_pred EEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 81 VLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
+|++++|.+.+..|. .+.++++|++|++++|.+ +.+|..++.+++|++|++++|++++.+|..+. ++++|++|++++
T Consensus 168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 245 (968)
T PLN00113 168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVY 245 (968)
T ss_pred EEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcC
Confidence 999999998877766 467889999999999999 78999999999999999999999999999885 999999999999
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|.+.+..+..+..+++|++|++++|.+++.+|..++ .+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 999987555567899999999999999999999886 4899999999999999999999999999999999999999888
Q ss_pred CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCC
Q 042089 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~ 319 (557)
|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+...++|+.|++++|.+.+.+|.++..+
T Consensus 325 ~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 7665 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|++++.+|..+..+++|+.|++++|.+++.++... .+++|++|++++|++.+.+|..+ ..++|+.|++
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l 482 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL 482 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence 999999999999999999999999999999999999999888755 89999999999999999988766 4588999999
Q ss_pred CCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccccc
Q 042089 399 RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLF 464 (557)
Q Consensus 399 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~~ 464 (557)
++|++++.+|.++..+++|+.|+|++|++++.+|..+..+++|++|++++|.++|.+|..+.+++.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999998876653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=315.78 Aligned_cols=435 Identities=26% Similarity=0.336 Sum_probs=285.2
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+..|++|++.+|.++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.++.++|.+. ++|++ ++.+-.++.+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~-i~~~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS-IGRLLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch-HHHHhhhhhh
Confidence 444555555555555 44555555555555555555555 55555555556666666666555 44433 4555555555
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
+..+|+.....+ .+..+.+|..+++.+|++.++|+..-+++.|++||...|.+. .+|..++ .+.+|..|++..|.+
T Consensus 143 ~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 143 DATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKI 218 (565)
T ss_pred hccccccccCch--HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhccc
Confidence 555555432211 234555666666666666666655555666666666666555 6666653 666666666666666
Q ss_pred cCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcc
Q 042089 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242 (557)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 242 (557)
... ..+..|..|+++.++.|++. .+|+..+..++++.+||+.+|++. ..|+.++-+++|++||+++|.++ .+|..
T Consensus 219 ~~l--Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 219 RFL--PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred ccC--CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence 554 23445566666666666665 666666666667777777777766 56666666777777777777766 44444
Q ss_pred cccCCCCCcEEeccCCcccc-------------------------------------ccCc----cccCcccccceeccc
Q 042089 243 SVNGCASLEYLDVSENNFYG-------------------------------------HIFP----TYMNLTQLRGLYLKN 281 (557)
Q Consensus 243 ~~~~~~~L~~L~Ls~n~l~~-------------------------------------~~~~----~~~~l~~L~~L~L~~ 281 (557)
. +++ .|+.|.+.+|.+.. ..+. ......+.++|++++
T Consensus 294 L-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 294 L-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred c-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 3 344 66666666664410 0000 011233455666666
Q ss_pred ccccccccccccCCC---CCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGKIKAGLLNSH---GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~~~~~l~~~~---~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
-+++ .+|...+... -++.++++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|+.|++++|.+..
T Consensus 372 ~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~ 449 (565)
T KOG0472|consen 372 KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND 449 (565)
T ss_pred cccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh
Confidence 6655 3444333322 2667777777776 466666555554444444445555889999999999999999998875
Q ss_pred ccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL 438 (557)
Q Consensus 359 ~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l 438 (557)
..-....+..|+.++++.|+|. .+|.++.....++.+-.++|++...-|..+.++.+|..|||.+|.+. .||..+++|
T Consensus 450 LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 4334457888999999999998 89999999888999999999996555566999999999999999999 899999999
Q ss_pred CCCCEEEccCCcCcCCcCcc
Q 042089 439 QKLRILDLSHNKLNGSIPSC 458 (557)
Q Consensus 439 ~~L~~Ldls~N~l~g~ip~~ 458 (557)
.+|++|++++|+|. .|+.
T Consensus 528 tnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cceeEEEecCCccC--CCHH
Confidence 99999999999998 6654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=301.22 Aligned_cols=390 Identities=24% Similarity=0.226 Sum_probs=318.8
Q ss_pred CEEECCCCcCCccCchhccCC--CCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 31 KVFDISSNQLSGNLPSVIANL--TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 31 ~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
+.||.+.+.+...--..+... +.-+.||+++|.++ .+...+|.++++|+.+.+..|.++ .+|. ......+|+.|+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~ 131 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLD 131 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEe
Confidence 345666665543211222211 23345777777776 455556677777777777766654 2332 123344688999
Q ss_pred CCCCCCCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCc
Q 042089 109 LPNCSLKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187 (557)
Q Consensus 109 L~~n~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (557)
|.+|.+..+. +.+..++.|+.||||.|.++ ++|..-|..-.++++|+|++|.++......+..+.+|..|.|++|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 9999885554 56788889999999999998 777766656678999999999999877677888889999999999999
Q ss_pred CCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcc
Q 042089 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT 267 (557)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 267 (557)
.+|...++.+++|+.|+|..|.+.-.---.|..+++|+.|.+..|.+. .+....|..|.++++|+|+.|+++..-..+
T Consensus 211 -tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 211 -TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred -ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence 899988888999999999999987444567899999999999999998 677777889999999999999998777788
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 347 (557)
+.++++|+.|+++.|.+...-++.+..+++|++|+|++|+++..-+..|..++.|+.|.|++|.+...--..|..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 89999999999999999988888888999999999999999998899999999999999999999877777888899999
Q ss_pred EEEccCccccccccc----ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 348 ILYLSENRLFGSIAS----FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 348 ~L~L~~n~l~~~i~~----~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.|||++|.+++.|.. +..+++|+.|++.+|++...-...|.++..|++|||++|.|...-|.+|..+ .|+.|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 999999999876543 2379999999999999996556889999999999999999988889999988 88888876
Q ss_pred CCcc
Q 042089 424 GNYL 427 (557)
Q Consensus 424 ~N~l 427 (557)
.-.|
T Consensus 448 Sssf 451 (873)
T KOG4194|consen 448 SSSF 451 (873)
T ss_pred ccce
Confidence 5443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=299.32 Aligned_cols=426 Identities=25% Similarity=0.313 Sum_probs=275.0
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
.|+.+++++|.+. .+.+.+.++..|.+|+++.|++. ..|++++.+..++.++.++|.+. .+|+. ++.+.+++.+++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~-i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQ-IGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHH-Hhhhhhhhhhhc
Confidence 4677888888887 45667888999999999999988 78889999999999999999988 78864 788888888988
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
+.|.+..-.+ .++.+..|+.++..+|++..+|+.++.+.++..+++.+|+++ ..|+... +++.|+.++..+|.++.
T Consensus 122 s~n~~~el~~--~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 122 SSNELKELPD--SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLET 197 (565)
T ss_pred cccceeecCc--hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhhc
Confidence 8888764333 356777888888888888888888888888888888888888 4444444 58888888888888775
Q ss_pred cccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcccc-CCCCCcEEEcCCCeeeeecCccc
Q 042089 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG-EMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
.. ...+.+.+|+.|++..|++. .+| ++. .|+.|+.++++.|.+. .+|.+.+ ++.++.+||+.+|++. +.|.++
T Consensus 198 lP-~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 198 LP-PELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred CC-hhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 42 33457788888888888877 677 443 4788888888888887 6666655 7888888888888887 777766
Q ss_pred ccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCC---CcEE-------EccCC----ccc
Q 042089 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG---LVVL-------DISNN----LLS 309 (557)
Q Consensus 244 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~---L~~L-------~Ls~n----~l~ 309 (557)
. .+.+|++||+++|.+++ +|.+++++ .|+.|.+.+|.+.. +-..+-++.. |++| -++.. .-+
T Consensus 272 c-lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 272 C-LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred H-HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 4 57788888888888874 66778888 88888888887642 1111111000 0000 00000 000
Q ss_pred CccCc----cccCCCCCcEEEcCCCcCCCCcchhhccCCC---CcEEEccCcccccccccccCCCCccE-EEccCCcccc
Q 042089 310 GHIPC----WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ---LEILYLSENRLFGSIASFLNLSSIMH-LYLQKNALSG 381 (557)
Q Consensus 310 ~~~p~----~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~i~~~~~~~~L~~-L~L~~n~l~~ 381 (557)
+..|. ....+.+.+.|++++-+++ .+|........ .+.++++.|++.........++.+++ +.+++|.++
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is- 425 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS- 425 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-
Confidence 01111 1112334555566655555 33333222222 55566666665432222223333322 333333333
Q ss_pred cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 382 QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 382 ~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
-+|..+..+++|..|++++|.+ ..+|..++.+..||.|+++.|+|. .+|+.+..+..++.+-.++|++.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred cchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 5555555556666666665555 355555555555666666666555 55555555444544444445543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=289.61 Aligned_cols=362 Identities=23% Similarity=0.198 Sum_probs=190.8
Q ss_pred cEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
+.|++++|.++. +....+-++++|+.+++..|.+..||.......+|++|+|.+|.++ ++...-.+.++.|++|||+.
T Consensus 81 ~~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSH-IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeecccccccc-CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 446666665542 2222344556666666666666666665555555666666666665 33333334556666666666
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|.++......+..-.++++|+|++|.++ .+...-+..+.+|..|.|+.|.++...+..|.++++|+.|+|..|++. .+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 6655543333334445666666666555 333333334555555666666655444445555566666666555553 22
Q ss_pred CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCC
Q 042089 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~ 319 (557)
....|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|++|+|.+...-++.+.-+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 22334555555555555555554444445555555555555555554444555555555555555555555555555555
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccch---hhhhcCCCCcE
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIP---STLLRSTELLT 395 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p---~~l~~~~~L~~ 395 (557)
++|++|+|+.|+++..-+.+|..+..|+.|+|++|.++..-...+ .+++|++|||++|.+++.|. ..+..+++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 555555555555555555555555555555555555542211111 45555555555555554432 23344555555
Q ss_pred EeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 396 LDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 396 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
|++.+|++....-.+|..+++|+.|+|.+|-+...-|.+|..+ .|+.|-+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 5555555543333355555555555555555554445555544 4444444
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-34 Score=286.34 Aligned_cols=364 Identities=26% Similarity=0.393 Sum_probs=246.6
Q ss_pred CCCcCEEeCCCCCCcc-cCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 3 LKNLTELDLRENNLEG-QLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++.++-+|+++|.|+| .+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..... .++.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp---- 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG--ELSDLP---- 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh--hhccch----
Confidence 5667778888888885 47888888888888888888777 778888888888888888887652111 133344
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCC--CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccC
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL--KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 159 (557)
.|+.+.+..|++ ..||..+.++..|++||||.|++. ++|..+ +.-+++-+|+|++
T Consensus 79 ---------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 79 ---------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSY 135 (1255)
T ss_pred ---------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEccc
Confidence 444444555555 457777777777888888888777 777765 3555555555555
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeec
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (557)
|++. +||..++-++..|-.|||++|.+. .+|+.+..+..|++|+|++|.+. ..
T Consensus 136 N~Ie-------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hf 188 (1255)
T KOG0444|consen 136 NNIE-------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HF 188 (1255)
T ss_pred Cccc-------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HH
Confidence 5544 444444444455555555555554 44445555555555555555443 11
Q ss_pred CcccccCCCCCcEEeccCCccc-cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccC
Q 042089 240 SATSVNGCASLEYLDVSENNFY-GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 318 (557)
Q Consensus 240 ~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 318 (557)
.-.....+++|++|.+++.+-+ .-+|.++..+.+|..++++.|+++ .+|..+.++++|+.|+||+|.++. +....+.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHH
Confidence 1111123445555555554332 245667777777778888887777 677778888888888888887773 2233334
Q ss_pred CCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEE
Q 042089 319 FSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396 (557)
Q Consensus 319 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 396 (557)
-.+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++- .||+-. .+..|+++...+|.+. .+|..+..|..|+.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 457788888888887 678888888888888888888752 355544 7888888888888887 788888888888888
Q ss_pred eCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 397 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
.|++|++ -..|+++.-++.|++||++.|.--
T Consensus 345 ~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 345 KLDHNRL-ITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccccce-eechhhhhhcCCcceeeccCCcCc
Confidence 8888888 478888888888888888888654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-34 Score=282.28 Aligned_cols=363 Identities=24% Similarity=0.304 Sum_probs=303.5
Q ss_pred CcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEcc
Q 042089 79 LEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 158 (557)
.+-.|+++|+++|..-+.....+++++.|.|...++..+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhh
Confidence 334455555555332222345677888888888889999999999999999999999987 444444 378999999999
Q ss_pred CccccCcc-cCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCc-cccCCCCCcEEEcCCCeee
Q 042089 159 NNSFSGIL-QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFS 236 (557)
Q Consensus 159 ~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~ 236 (557)
+|++.... +..+..+..|+.|||+.|++. +.|..+- ..+++-+|+|++|++. .||. -+.+++.|-.|||++|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 99987543 123458899999999999998 8899885 4789999999999998 5665 4678999999999999997
Q ss_pred eecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc-ccccccccCCCCCcEEEccCCcccCccCcc
Q 042089 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCW 315 (557)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 315 (557)
.+|+.+ .++..|++|+|++|.+.-.-...+-.+++|++|.+++.+-+ ..+|.++-.+.+|..+|+|.|.+. .+|+.
T Consensus 164 -~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 777765 68999999999999775433344556788999999998765 458899999999999999999998 68999
Q ss_pred ccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccc-cchhhhhcCCCCc
Q 042089 316 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSG-QIPSTLLRSTELL 394 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~~~~L~ 394 (557)
+.++.+|+.|++++|+++ ++..+...+.+|+.|+++.|+++........++.|+.|.+.+|+++- -||..++++..|+
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 999999999999999998 56666777889999999999998544444499999999999999763 4899999999999
Q ss_pred EEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 395 TLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 395 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
++..++|.+ ..+|+.++.|++|+.|.|+.|++. .+|+++.-++.|.+||+..|+=-
T Consensus 320 vf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 320 VFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 999999998 588999999999999999999998 89999999999999999999754
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-34 Score=294.82 Aligned_cols=418 Identities=29% Similarity=0.351 Sum_probs=316.8
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
.|+.|||++|.++ ..|..+..+++|+.|+++.|.+. ..|...+++.+|++++|.+|.+. ..|.+ +..+.+|++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~-~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS-ISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchh-HHhhhccccccc
Confidence 4899999999887 77888999999999999999888 77888889999999999999887 77754 888899999999
Q ss_pred cCccCcccccCCCCCCCCc-------------------ccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHH
Q 042089 85 LKVSNNLRFKTENWIPTFQ-------------------LKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTW 144 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-------------------L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~ 144 (557)
+.|.+... |. .+..++. ++.+++..+.+ +.++..+..++. .|||+.|.+. .+.
T Consensus 122 S~N~f~~~-Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d-- 194 (1081)
T KOG0618|consen 122 SFNHFGPI-PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD-- 194 (1081)
T ss_pred chhccCCC-ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--
Confidence 99887532 21 1112222 55555555555 555555555444 4777777665 221
Q ss_pred HhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCC
Q 042089 145 LMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE 224 (557)
Q Consensus 145 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 224 (557)
...+.+|+.+....|.+... ...-++|+.|+.+.|.++...+.- ...+|++++++.|+++ .+|.|++.+.+
T Consensus 195 -ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~~~~n 265 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-NLPEWIGACAN 265 (1081)
T ss_pred -hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecccc---ccccceeeecchhhhh-cchHHHHhccc
Confidence 23667777777777765532 123456788888888777222221 2467889999999988 56788999999
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccc-cCCC-CCcEEE
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL-LNSH-GLVVLD 302 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~~~-~L~~L~ 302 (557)
|+.++..+|.++ .+|..++ ..++|+.|.+..|.+. .+|+.....+.|++|+|..|++. ..|+.+ .... .++.++
T Consensus 266 le~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh
Confidence 999999999886 7777765 5788999999888886 56777788889999999999887 444433 2222 367777
Q ss_pred ccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccc
Q 042089 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSG 381 (557)
Q Consensus 303 Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~ 381 (557)
.+.|.+.......=..++.|+.|.+.+|.+++..-+.+.+++.|++|+|++|.+......+. ++..|++|+|++|+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 77777663322222245679999999999999988889999999999999999975444444 8999999999999999
Q ss_pred cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc-CCccccCCCCCCEEEccCCc
Q 042089 382 QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE-IPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 382 ~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~-ip~~l~~l~~L~~Ldls~N~ 450 (557)
.+|.++.+|..|++|...+|++. .+| .+..++.|+++|++.|+++.. +|.... -++|++||+++|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 89999999999999999999995 777 889999999999999999854 344332 3899999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-32 Score=280.33 Aligned_cols=421 Identities=27% Similarity=0.313 Sum_probs=277.8
Q ss_pred cCEEeCCCCCCcccCC-ccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 6 LTELDLRENNLEGQLP-WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
++.|+++.|.+- ..| +.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+|. ...++.+|++|.+
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhhee
Confidence 567788887654 222 33455666999999999887 88999999999999999999998 7784 5889999999999
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
.+|... ..| ..+..+.+|++|+++.|+++.+|..+..++.+..++.++|.....++. ..++.+++..|.+.+
T Consensus 99 ~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 99 KNNRLQ-SLP-ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGG 170 (1081)
T ss_pred ccchhh-cCc-hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhccc
Confidence 998764 222 245678899999999999999999888877777777777722212211 115555555555555
Q ss_pred cccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcE--------------------EeCCCCcCcccCCccccCCCC
Q 042089 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML--------------------IDISKNNFEGNIPYSIGEMKE 224 (557)
Q Consensus 165 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~--------------------L~L~~n~l~~~~p~~l~~l~~ 224 (557)
........++. .++|.+|.++ ... . ..+.+|+. |+...|.++...+ -.--.+
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~n 242 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLN 242 (1081)
T ss_pred chhcchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--cccccc
Confidence 43333333333 4666666544 111 1 12344444 4444444441111 112235
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEcc
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDIS 304 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls 304 (557)
|+++++++|+++ .+|++ ...|.+|+.+++.+|++ ..+|..+...++|+.|.+..|.+. -+|......+.|++|+|.
T Consensus 243 l~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEW-IGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchhhhh-cchHH-HHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 555555555555 44432 24555555555555555 244555555555555555555554 444445555556666665
Q ss_pred CCcccCccCccccCCCC-CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc-cccccCCCCccEEEccCCccccc
Q 042089 305 NNLLSGHIPCWIGNFSY-LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS-IASFLNLSSIMHLYLQKNALSGQ 382 (557)
Q Consensus 305 ~n~l~~~~p~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~~~~~L~~L~L~~n~l~~~ 382 (557)
.|.+....+..+..... +..+..+.|.+.......=..++.|+.|.+.+|.++.. +|.+.+.++|++|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55554322222222211 34444444444322111112346688899999999874 45666899999999999999844
Q ss_pred chhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 383 IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 383 ~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
....+.++..|+.|+|++|+++ .+|..+..++.|++|...+|++. ..| ++.++++|+++|+|.|+++-
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 4467788999999999999995 88999999999999999999998 778 89999999999999999975
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=233.79 Aligned_cols=341 Identities=20% Similarity=0.209 Sum_probs=231.6
Q ss_pred ChhhhcCCCCCcEEEecCccC------cccccCCCCCCC-CcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCC
Q 042089 69 PLSLLTNHSNLEVLRLLKVSN------NLRFKTENWIPT-FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNF 141 (557)
Q Consensus 69 p~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~-~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~ 141 (557)
....|.++++|+.|.+..+.. ...+|. .+..+ .+|+.|.+.++.+..+|..+ ...+|++|+++++++. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cc
Confidence 334566777777777754421 112222 12222 35788888888777787766 4577888888888776 56
Q ss_pred cHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccC
Q 042089 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGE 221 (557)
Q Consensus 142 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 221 (557)
|..+ ..+++|+.|+++++...... .....+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|..+ +
T Consensus 627 ~~~~-~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 627 WDGV-HSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred cccc-ccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-C
Confidence 6655 36788888888776533321 1244677888888888766667787775 47888888888876555677655 6
Q ss_pred CCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc-------ccccccccC
Q 042089 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-------GKIKAGLLN 294 (557)
Q Consensus 222 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-------~~~~~~l~~ 294 (557)
+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++... ...+.....
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 788888888887655455532 357788888888764 345443 5677777777664321 111112223
Q ss_pred CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEc
Q 042089 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374 (557)
Q Consensus 295 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L 374 (557)
.++|+.|++++|...+.+|.+++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+|++|+|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeEC
Confidence 4678888888887777788888888888888888876555677665 6788888888887655555543 357888888
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 426 (557)
++|.++ .+|.++..+++|++|++++|+--..+|..+..++.|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888887 678888888888888888754445677777778888888887774
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=235.72 Aligned_cols=339 Identities=19% Similarity=0.185 Sum_probs=273.6
Q ss_pred CCCCCCCCcccEEECCCCCC-------CCcChhhhCCC-CCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcc
Q 042089 95 TENWIPTFQLKVLQLPNCSL-------KVIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL 166 (557)
Q Consensus 95 ~~~~~~~~~L~~L~L~~n~l-------~~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 166 (557)
..++..+.+|+.|.+..+.. ..+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+....
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccc
Confidence 34567888999999976542 35777777664 6999999999887 788765 5789999999999887542
Q ss_pred cCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccC
Q 042089 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNG 246 (557)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 246 (557)
.....+++|+.++++++.....+|. +. .+++|+.|++++|.....+|..++++++|+.|++++|...+.+|... .
T Consensus 628 -~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~ 702 (1153)
T PLN03210 628 -DGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--N 702 (1153)
T ss_pred -cccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--C
Confidence 2234788999999999876667775 43 48999999999998777899999999999999999987555787754 6
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCccc-------CccCccccCC
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS-------GHIPCWIGNF 319 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~-------~~~p~~l~~~ 319 (557)
+++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|++.++... ...+......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 899999999999766666543 468899999999986 566654 5788888888774321 1122223345
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. .++|+.|+++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 7899999999998889999999999999999999987778888778999999999998765566643 3679999999
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
+|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99996 789999999999999999965555788888999999999999885
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=208.53 Aligned_cols=263 Identities=27% Similarity=0.309 Sum_probs=131.0
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
-..|+++.+.+..+|..+. .+|+.|++++|+++ .+|. ..++|++|++++|.++.... ..++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence 4456666666666665543 25666666666665 3443 23556666666665554311 123555555555
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
|.++ .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.+++
T Consensus 272 N~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 272 NPLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS- 336 (788)
T ss_pred Cchh-hhhhc----hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc-
Confidence 5554 33321 234555555555554 23321 244555555555554 23321 1234444555544432
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
+|.. ..+|+.|++++|++++ +|.. ..+|..|++++|++++ +|.. .
T Consensus 337 ------------------------LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 337 ------------------------LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred ------------------------cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 2221 1244555555555442 2322 1234445555555542 3322 1
Q ss_pred CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 344 RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..++.++.|+.|+|+
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccC-CCCc--ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 345555555555553 3322 245566666666665 344322 34556666666664 566666666666666666
Q ss_pred CCcccccCCccc
Q 042089 424 GNYLQGEIPIAL 435 (557)
Q Consensus 424 ~N~l~g~ip~~l 435 (557)
+|+++|.+|..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 666666655544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=205.13 Aligned_cols=263 Identities=23% Similarity=0.288 Sum_probs=123.5
Q ss_pred CCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEEC
Q 042089 30 LKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQL 109 (557)
Q Consensus 30 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L 109 (557)
-..||++.+.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|.++. +|. ...+|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccC----cccccceeec
Confidence 344555555554 3444443 24555555555554 3332 12444444444444331 111 1134555555
Q ss_pred CCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCC
Q 042089 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGT 189 (557)
Q Consensus 110 ~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (557)
++|.+..+|... .+|+.|++++|+++ .+|. ..++|+.|++++|.+++.... ...|+.|++++|+++ .
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~-~ 336 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT-S 336 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCccccCCCC----cccccccccccCccc-c
Confidence 555555555422 34556666666665 4443 234566666666655543211 123555556666555 3
Q ss_pred CchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcccc
Q 042089 190 LPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269 (557)
Q Consensus 190 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (557)
+|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|..
T Consensus 337 LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l-- 400 (788)
T PRK15387 337 LPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL-- 400 (788)
T ss_pred cccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc--
Confidence 4421 235566666666655 23332 234555555555555 34421 2345555555555542 2221
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhh
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 340 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l 340 (557)
.++|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|..+++++.|+.|++++|.+++..+..+
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 1345555555555542 3322 123445555555554 345555555555555555555555444443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-23 Score=194.88 Aligned_cols=139 Identities=22% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI 99 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 99 (557)
+|..+. ..-..++|..|.++...|.+|+.+++||.||||+|.|+ .|.+..|.+++.+-.|.+.+++-...++...+.
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 454444 34556677777777555566777777777777777776 455566777777666666664444455666666
Q ss_pred CCCcccEEECCCCCCCCc-ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 100 PTFQLKVLQLPNCSLKVI-PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
.+..|+.|.+.-|++..+ .+.+..++++..|.+.+|.+. .++...+..+..++.+++..|.+
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 677777777777777444 345667777777777777776 56665556677777777776664
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=198.22 Aligned_cols=289 Identities=22% Similarity=0.346 Sum_probs=148.8
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
...|+++++.+..+|..+. ++++.|++++|+++ .+|..++ ++|+.|++++|.++.. |......|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL---P~~l~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI---PATLPDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC---ChhhhccccEEECcC
Confidence 4555555555555554432 34555666665555 4454432 3455555555555432 211223445555555
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
|++. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.+++
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---------------------------~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP---------------------------EELRYLSVYDNSIRT- 297 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccC-ccccccC---------------------------CCCcEEECCCCcccc-
Confidence 5444 4444332 24444444444444 2333322 244555555554442
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
+|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 298 LPAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred Ccccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 22221 1245556666665552 33322 2456666666666654 454443 46667777777666 3454442
Q ss_pred CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhh----hhcCCCCcEEeCCCCcccccCCccccCCCCccE
Q 042089 344 RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPST----LLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 419 (557)
++|+.|++++|+++. +|... ...|+.|++++|+++ .+|.. ...++.+..+++.+|+++. ..+++|+.
T Consensus 367 ~~L~~LdLs~N~Lt~-LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~ 437 (754)
T PRK15370 367 PTITTLDVSRNALTN-LPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQR 437 (754)
T ss_pred CCcCEEECCCCcCCC-CCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHH
Confidence 467777777777663 33322 135777777777776 44443 3345777888888888752 23445555
Q ss_pred EEcCCCccccc-CCccccCCCCCCEEEccCCcCcCCc
Q 042089 420 LLLRGNYLQGE-IPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 420 L~L~~N~l~g~-ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+ ++.+.+.|. ++...+.+++++....-++...+-+
T Consensus 438 L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl 473 (754)
T PRK15370 438 L-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWL 473 (754)
T ss_pred h-hhcccccCCcccccccccccccccchHHHHHhccC
Confidence 5 445555553 3445555566665544444444433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=194.13 Aligned_cols=246 Identities=24% Similarity=0.331 Sum_probs=165.3
Q ss_pred CCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEE
Q 042089 77 SNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 156 (557)
.+...|++.++.++. +|.. + ...|+.|++++|.+..+|..+. ++|++|++++|+++ .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~-I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPAC-I--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcc-c--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 456789998887763 3432 1 2479999999999999998765 58999999999999 7887654 5799999
Q ss_pred ccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee
Q 042089 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 236 (557)
+++|.+... |.....+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++
T Consensus 248 Ls~N~L~~L---P~~l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRITEL---PERLPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccCcC---ChhHhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 999998853 4333468999999999998 6887663 58999999999998 4565443 47888888888887
Q ss_pred eecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccc
Q 042089 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI 316 (557)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 316 (557)
.+|... .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.++. +|..+
T Consensus 318 -~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 318 -ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred -cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 455433 2567777787777764 444332 46666666666665 344433 2456666666666552 34333
Q ss_pred cCCCCCcEEEcCCCcCCCCcchh----hccCCCCcEEEccCccc
Q 042089 317 GNFSYLDVLLMSKNHLEGNIPVQ----INNFRQLEILYLSENRL 356 (557)
Q Consensus 317 ~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l 356 (557)
. ..|+.|++++|+++ .+|.. ...++.+..+++.+|++
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 24555555555554 22322 22234444444444444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-20 Score=184.97 Aligned_cols=253 Identities=24% Similarity=0.249 Sum_probs=122.1
Q ss_pred ccCCcEEeCCCCcCcc----cCCccccCCCCCcEEEcCCCeeee------ecCcccccCCCCCcEEeccCCccccccCcc
Q 042089 198 LQKLMLIDISKNNFEG----NIPYSIGEMKELFLLDLSRNKFSG------DLSATSVNGCASLEYLDVSENNFYGHIFPT 267 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 267 (557)
+..|+.++++++.++. .++..+...+.++.++++++.+.+ .++. .+..+++|+.|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHH
Confidence 4445555555555432 123334444455555555554431 0111 1223455555555555554433333
Q ss_pred ccCccc---ccceecccccccc----cccccccCC-CCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCC
Q 042089 268 YMNLTQ---LRGLYLKNNHFTG----KIKAGLLNS-HGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 268 ~~~l~~---L~~L~L~~n~~~~----~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 333322 5555555555542 122233334 5666666666666532 233444555666666666666532
Q ss_pred ----cchhhccCCCCcEEEccCccccccc----cccc-CCCCccEEEccCCcccccchhhhhc-----CCCCcEEeCCCC
Q 042089 336 ----IPVQINNFRQLEILYLSENRLFGSI----ASFL-NLSSIMHLYLQKNALSGQIPSTLLR-----STELLTLDLRDN 401 (557)
Q Consensus 336 ----~~~~l~~l~~L~~L~L~~n~l~~~i----~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~N 401 (557)
++..+..+++|+.|++++|.+++.. +... .+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 2233444456666666666654321 1111 4556666666666655432222221 255666666666
Q ss_pred cccc----cCCccccCCCCccEEEcCCCccccc----CCccccCC-CCCCEEEccCCcC
Q 042089 402 KFFG----RIPHQINKHSELRVLLLRGNYLQGE----IPIALCQL-QKLRILDLSHNKL 451 (557)
Q Consensus 402 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~----ip~~l~~l-~~L~~Ldls~N~l 451 (557)
.+++ .++..+..+++|+++++++|.++.. +...+... +.|+.+|+.+|++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6642 2233344455666666666666643 23333333 4666666666553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-21 Score=180.96 Aligned_cols=290 Identities=20% Similarity=0.176 Sum_probs=213.9
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCC-CeeeeecC
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR-NKFSGDLS 240 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~ 240 (557)
-.|...+|..-.+.-..++|..|+++ .+|...+..+++|+.|||++|.|+..-|.+|..++++..|.+.+ |+|+ .+|
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLP 132 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhh
Confidence 33444455555556778999999998 88888888899999999999999999999999999988887766 8888 899
Q ss_pred cccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccC----------
Q 042089 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG---------- 310 (557)
Q Consensus 241 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~---------- 310 (557)
...|.++..++.|.+.-|++.......+..++++..|.+.+|.+...-...+.....++.+++..|.+..
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 9999999999999999999988888889999999999999999884444478888999999998887431
Q ss_pred --ccCccccCCCCCcEEEcCCCcCCCCcchhhccC-CCCcEEEccCccccccccc-cc-CCCCccEEEccCCcccccchh
Q 042089 311 --HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLEILYLSENRLFGSIAS-FL-NLSSIMHLYLQKNALSGQIPS 385 (557)
Q Consensus 311 --~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~-~~-~~~~L~~L~L~~n~l~~~~p~ 385 (557)
..|..++...-..-..+.+.++..+-+..+... ..+..=-.+.+...+..|. ++ .+++|+.|+|++|++++.-+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 122222222222222233333332222222211 1221111223333333343 33 788888999999998888888
Q ss_pred hhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 386 TLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 386 ~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
+|.....++.|.|..|++...--..|.++..|+.|+|.+|+++-.-|.+|..+..|..|.+-.|+|..
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 88888889999999988865555667788888999999999988888888888889999988888853
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-18 Score=174.40 Aligned_cols=136 Identities=25% Similarity=0.372 Sum_probs=76.1
Q ss_pred ccCCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccc-ccc
Q 042089 292 LLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGS-IAS 362 (557)
Q Consensus 292 l~~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-i~~ 362 (557)
+..++.|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. +..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 33444555555555555531 222333445566666666655533 233445566677777777766541 111
Q ss_pred cc-----CCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCccccc----CCccccCC-CCccEEEcCCCcc
Q 042089 363 FL-----NLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFFGR----IPHQINKH-SELRVLLLRGNYL 427 (557)
Q Consensus 363 ~~-----~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l 427 (557)
.. ..+.|++|++++|.+++ .++..+..+++|+++++++|+++.. +...+... +.|+++++.+|.+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 11 23677777777777752 2445566667788888888887654 33333333 5677777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-18 Score=144.59 Aligned_cols=178 Identities=29% Similarity=0.491 Sum_probs=92.0
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
.++.|.+++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.++.|+.|.+.-|++. ..|..|+.++.|++||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3333444444443 23333333444444444444433 23334444444444444444443 445555555555666666
Q ss_pred Cccccc-cccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 353 ENRLFG-SIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 353 ~n~l~~-~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
+|++.. .+|. ++.+..|+.|+|++|.+. .+|..++++++|+.|.+..|.+- +.|..++.++.|+.|.+.+|+++ .
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 555543 3333 225556666666666665 56666666666666666666663 56666666666666666666666 5
Q ss_pred CCccccCCC---CCCEEEccCCcCcCCcC
Q 042089 431 IPIALCQLQ---KLRILDLSHNKLNGSIP 456 (557)
Q Consensus 431 ip~~l~~l~---~L~~Ldls~N~l~g~ip 456 (557)
+|.+++++. +=+++.+.+|+....|.
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 555554432 22334445555544443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-17 Score=139.33 Aligned_cols=154 Identities=28% Similarity=0.410 Sum_probs=95.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+.+.|-||.|.++ .+|+.++.+.+|++|++++|+++ .+|..++.+++|+.|+++-|++. ..|. .|+.++-|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhh
Confidence 44555666666665 45666666666666666666666 56666666666666666666665 4553 366666666666
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcccc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 163 (557)
+.+|.++...-+..++.+..|+.|.+++|.+..+|..++.+++||.|.++.|.+- ++|..+. .+++|++|++.+|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee
Confidence 6666665444343445555666666666666666666666666666666666665 5666653 5556666655555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-13 Score=134.14 Aligned_cols=194 Identities=29% Similarity=0.422 Sum_probs=126.9
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 326 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~ 326 (557)
+.--...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|++++++.|+++ ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455677777775 56666777777777777777776 66777777777777777777776 4566666553 66777
Q ss_pred cCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 327 MSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 327 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+++|+++ .+|..++..+.|..||.+.|.+....+....+.+|+.|.+..|++. .+|..+. +-.|..||+++|+++ .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 7777766 5666666667777777777776654455556667777777777766 4555555 334667777777764 6
Q ss_pred CCccccCCCCccEEEcCCCcccccCCccccCCCCC---CEEEccCC
Q 042089 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL---RILDLSHN 449 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L---~~Ldls~N 449 (557)
+|..|.++..|++|.|.+|.+. .-|..+|...++ ++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6667777777777777777666 445555544433 33444444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-13 Score=133.15 Aligned_cols=196 Identities=29% Similarity=0.353 Sum_probs=166.5
Q ss_pred CCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcE
Q 042089 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300 (557)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~ 300 (557)
.+.--...|++.|++. ++|.+. ..+..|+.+.+..|.+. .+|..+.++..|++++++.|++. ..|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3455567899999998 888776 46788999999999885 68888999999999999999998 6777776665 899
Q ss_pred EEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCccc
Q 042089 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALS 380 (557)
Q Consensus 301 L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~ 380 (557)
|.+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++....+... .-.|..||++.|+++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee
Confidence 999999987 68888888899999999999998 688889999999999999999986555555 556899999999998
Q ss_pred ccchhhhhcCCCCcEEeCCCCcccccCCccc---cCCCCccEEEcCCCc
Q 042089 381 GQIPSTLLRSTELLTLDLRDNKFFGRIPHQI---NKHSELRVLLLRGNY 426 (557)
Q Consensus 381 ~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~ 426 (557)
.+|-.|.+++.|++|-|.+|.+. ..|..+ |...-.++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999995 566665 345567888888885
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-11 Score=128.54 Aligned_cols=110 Identities=32% Similarity=0.437 Sum_probs=59.4
Q ss_pred CcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 346 LEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
++.|+|++|.+.|.+|... .+++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4455555555555554433 455555555555555555555555555555555555555555555555555555555555
Q ss_pred CcccccCCccccCC-CCCCEEEccCCcCcCCc
Q 042089 425 NYLQGEIPIALCQL-QKLRILDLSHNKLNGSI 455 (557)
Q Consensus 425 N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~i 455 (557)
|+++|.+|..+... .++..+++++|+..+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC
Confidence 55555555554432 24445555555544443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-11 Score=128.59 Aligned_cols=95 Identities=35% Similarity=0.524 Sum_probs=91.1
Q ss_pred CccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEcc
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls 447 (557)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCcCcccccc
Q 042089 448 HNKLNGSIPSCFANV 462 (557)
Q Consensus 448 ~N~l~g~ip~~~~~l 462 (557)
+|+++|.+|..++..
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999999999987653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-11 Score=122.67 Aligned_cols=154 Identities=32% Similarity=0.445 Sum_probs=81.3
Q ss_pred CCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEcc
Q 042089 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQ 375 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~ 375 (557)
+|+.|++++|.+. .+|..++.++.|+.|++++|+++ .+|...+..++|+.|++++|++. .+|... ....|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4444444444433 22233444444455555554444 33333334455555555555554 233332 33445566666
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+|... .++..+.++..+..+.+.+|++. .++..++.+++++.|++++|+++ .++. +..+.+++.+|+++|.++..+
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 66432 34555666666666666666653 33556666666666666666666 3333 666666777777776666555
Q ss_pred Cc
Q 042089 456 PS 457 (557)
Q Consensus 456 p~ 457 (557)
|.
T Consensus 294 ~~ 295 (394)
T COG4886 294 PL 295 (394)
T ss_pred hh
Confidence 44
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-11 Score=116.72 Aligned_cols=232 Identities=22% Similarity=0.247 Sum_probs=105.9
Q ss_pred CCCcCEEeCCCCCCccc----CCccCCCCCCCCEEECCCCcCCc----cCchh-------ccCCCCCCEEeCcCcccCcc
Q 042089 3 LKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLSG----NLPSV-------IANLTSLEYLVLSDNNFQGE 67 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~-------l~~l~~L~~L~Ls~n~l~g~ 67 (557)
+..++.++|++|.|... +...+.+.+.|+..++|.- ++| .+|+. +..+++|++||||+|-|.-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34566677777666432 4445566666666666643 332 23322 33455666666666665432
Q ss_pred cChh---hhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh--------------hhhCCCCCcEE
Q 042089 68 FPLS---LLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS--------------FLLHQYNLKFL 130 (557)
Q Consensus 68 ~p~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~--------------~l~~~~~L~~L 130 (557)
.+.. .+.++..|++|.+.+| .+|..-. ....-+.|+++
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-------------------------Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-------------------------GLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-------------------------CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 2221 2344455555555444 4422111 11223345555
Q ss_pred EccCCcCcCCCc---HHHhhcCCCCCEEEccCccccCccc----CCcccCCCccEEECcCCcCcCCCchhHhh---hccC
Q 042089 131 DLSSNKLVGNFP---TWLMQNNTNLEVLRLSNNSFSGILQ----LPKVKHDFLRHLDISNNNLIGTLPQNMGT---VLQK 200 (557)
Q Consensus 131 ~Ls~n~l~~~~p---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l~~ 200 (557)
..++|++-..-. ...++..+.|+.+.+..|.+..... ..+..+++|++|||..|.|+......++. .+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 555555432111 1122334455555555554432211 01224555555555555554332222221 2345
Q ss_pred CcEEeCCCCcCcccCCccc-----cCCCCCcEEEcCCCeeeee---cCcccccCCCCCcEEeccCCcc
Q 042089 201 LMLIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGD---LSATSVNGCASLEYLDVSENNF 260 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~Ls~n~l 260 (557)
|+.+++++|.+...-..++ ...++|+++.+.+|.++-. .........+.|+.|+|++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5556666655542221111 1245666666666665421 1111112245666666666666
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-11 Score=117.95 Aligned_cols=162 Identities=21% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCCcccEEECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCC-cHHHhhcCCCCCEEEccCccccCcccC-CcccCCC
Q 042089 100 PTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNF-PTWLMQNNTNLEVLRLSNNSFSGILQL-PKVKHDF 175 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 175 (557)
+..+|+.+.|+++..+..+ +....|++++.|||+.|-+..-. -..+.+.+++|+.|+++.|.+...... ....++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4457888888888886666 46778888999999988766311 123456788899999998887643211 1235677
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
|+.|.++.|.++-.--.++...+++|+.|++..|...+.-.....-+..|+.|||++|++...-.-.....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 88888888887744444444567888888888885333333344556677788888777652221122345666777777
Q ss_pred cCCccc
Q 042089 256 SENNFY 261 (557)
Q Consensus 256 s~n~l~ 261 (557)
+.+.+.
T Consensus 279 s~tgi~ 284 (505)
T KOG3207|consen 279 SSTGIA 284 (505)
T ss_pred cccCcc
Confidence 766664
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=102.88 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 107 (557)
+++.|+|.+|.++. + +.++ .+.+|+.|+|++|.++ .++ .+..++.|++|++++|......+ .....+++|++|
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH-HHHHH-TT--EE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc-chHHhCCcCCEE
Confidence 44444444444442 1 1232 2344444444444444 222 13344444444444444432110 000124455555
Q ss_pred ECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCC--cHHHhhcCCCCCEEEcc
Q 042089 108 QLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNF--PTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 108 ~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~l~~L~~L~L~ 158 (557)
++++|.+..+. ..+..+++|++|++.+|.++..- ...+...+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 55555552222 34667788888888888776331 22344578888888754
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=119.10 Aligned_cols=199 Identities=29% Similarity=0.410 Sum_probs=103.0
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCC-CCcEEeccCCccccccCccccCcccccceeccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCA-SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
.+++..+.+...+ ..+...+.++.+++.+|.++ .++.... ... +|+.|+++.|.+. .++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3455555543222 22334455666666666655 4443331 221 4555555555553 2223344444555555555
Q ss_pred ccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc
Q 042089 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 282 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
|+++ .+|.. .+..+.|+.|++++|++. .+|........|+++.+++|+....+.
T Consensus 173 N~l~-~l~~~------------------------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~ 226 (394)
T COG4886 173 NDLS-DLPKL------------------------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS 226 (394)
T ss_pred chhh-hhhhh------------------------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch
Confidence 5444 23332 224444555555555554 334333334445566666654333333
Q ss_pred cccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 362 SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 362 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
....+..+..+.+.+|++. .++..+..++.+++|++++|+++.. +. ++.+..++.|++++|.+....|..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 3335555666666666655 2355666777777777777777533 32 667777777777777777555543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-11 Score=113.95 Aligned_cols=243 Identities=24% Similarity=0.320 Sum_probs=131.2
Q ss_pred ccCCcEEeCCCCcCcc----cCCccccCCCCCcEEEcCCCeeeee----cCccc------ccCCCCCcEEeccCCccccc
Q 042089 198 LQKLMLIDISKNNFEG----NIPYSIGEMKELFLLDLSRNKFSGD----LSATS------VNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~------~~~~~~L~~L~Ls~n~l~~~ 263 (557)
...++.+++++|.+.. .+...+.+.+.|+..++++- ++|. +|+.. .-.+++|++++||.|-+.-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4567777777777643 22333455566776666542 2332 22211 12344555555555544322
Q ss_pred cCcc----ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC----
Q 042089 264 IFPT----YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN---- 335 (557)
Q Consensus 264 ~~~~----~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~---- 335 (557)
.++. +..+..|++|.|.+|.+...-...++ ..|..|. .......-+.|+++...+|++...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeeccccccccHHH
Confidence 2221 22344444444444443211000000 0000000 111223345566666666666532
Q ss_pred cchhhccCCCCcEEEccCcccccc-c----ccccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc
Q 042089 336 IPVQINNFRQLEILYLSENRLFGS-I----ASFLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 336 ~~~~l~~l~~L~~L~L~~n~l~~~-i----~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+...+..++.|+.+.++.|.+... + -.+..+++|++|||++|.|+-. +...+..+++|+.|++++|.+...
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 334455667777777777766321 1 1222677777777777777532 345556667788888888877655
Q ss_pred CCccc-----cCCCCccEEEcCCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 407 IPHQI-----NKHSELRVLLLRGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 407 ~p~~l-----~~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
....+ ...|.|++|.|.+|.++.. +..++...+.|..|+|++|.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 44333 2367888888888888742 3345567888999999999984
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-10 Score=107.79 Aligned_cols=129 Identities=27% Similarity=0.246 Sum_probs=76.4
Q ss_pred CCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
.|+++|+++|.++ .+.++..-.|.+++|++++|.+. .+.....+++|+.|||++|.++ .+..+-.++.+.++|.|+.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 3455555555554 44444555556666666666554 2333335566666666666665 3444444556666677777
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccC-CccccCCCCCCEEEccCCcCcCC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|.+. --..++.+-+|..||+++|++...- ...++++|.|+++.|.+|++++.
T Consensus 362 N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 362 NKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6652 1234455556677777777776422 24577888888888888888754
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-11 Score=114.87 Aligned_cols=186 Identities=25% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCCCCEEECCCCcCCccCc--hhccCCCCCCEEeCcCcccCcccCh-hhhcCCCCCcEEEecCccCcccccCCCCCCC
Q 042089 25 SDLTGLKVFDISSNQLSGNLP--SVIANLTSLEYLVLSDNNFQGEFPL-SLLTNHSNLEVLRLLKVSNNLRFKTENWIPT 101 (557)
Q Consensus 25 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~g~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 101 (557)
+++.+|+.+.|.++... ..+ .....|++++.||||.|-|..-.|. .+...+++|+.|+++.|.+........-.
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-- 194 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--
Confidence 34556666666655544 222 2344566666666666655421111 12334555555555555443222111111
Q ss_pred CcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEEC
Q 042089 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181 (557)
Q Consensus 102 ~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 181 (557)
.++.|+.|.++.|.++-.--.++...+|+|+.|+|.+|...+....+...++.|+.|+|
T Consensus 195 ---------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 195 ---------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ---------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 23344555555555442222233334555555555555422222222334445555555
Q ss_pred cCCcCcCCCc-hhHhhhccCCcEEeCCCCcCccc-CCcc-----ccCCCCCcEEEcCCCee
Q 042089 182 SNNNLIGTLP-QNMGTVLQKLMLIDISKNNFEGN-IPYS-----IGEMKELFLLDLSRNKF 235 (557)
Q Consensus 182 ~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l 235 (557)
++|++...-. ...+ .++.|+.|.++.+.+... +|+. ....++|++|++..|++
T Consensus 254 s~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCCcccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555542211 1122 355555555555554321 1211 23344555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-10 Score=99.44 Aligned_cols=121 Identities=27% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh-hcCCCCcEEeC
Q 042089 321 YLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL-LRSTELLTLDL 398 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L 398 (557)
.+++|++.+|.|+. + +.++ .+.+|+.|++++|.++. ++.+..++.|++|++++|+++. ++..+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 34444444444442 1 1222 34455555555555542 3333345566666666666653 32233 34566666666
Q ss_pred CCCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEE
Q 042089 399 RDNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILD 445 (557)
Q Consensus 399 ~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ld 445 (557)
++|+|... .-..+..+++|++|+|.+|.++..-- ..+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66666431 11334455666666666665553210 1234555555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-10 Score=107.99 Aligned_cols=130 Identities=30% Similarity=0.344 Sum_probs=77.3
Q ss_pred CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEc
Q 042089 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374 (557)
Q Consensus 295 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L 374 (557)
+..|+.+|||+|.++ .+.++..-.+.++.|++++|.+... ..++.+++|+.|||++|.++....+...+.+++.|.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 455666777776665 3444455556666777777766522 2266666777777777766543333336666667777
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccc
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
+.|.+.. -..+.++-+|..||+++|+|.. .-...++++|.|+.+.|.+|.+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7766542 2345555666677777776632 122456666667777777776664
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-09 Score=114.69 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=90.3
Q ss_pred CCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCccc-CcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCccc
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF-QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 105 (557)
....+...+-+|.+. .++... .+++|++|-+..|.- -..++..+|..++.|++||+++|.--+..|. .++.+.+|+
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhh
Confidence 356666666666665 344333 345788888888751 2366666788888888888887665555555 356777888
Q ss_pred EEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 106 ~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+|++++..+..+|..+.++..|.+|++..+.-...+|. +...+++|++|.+....
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 88888888888888888888888888887765544443 33367888888776554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-09 Score=76.82 Aligned_cols=61 Identities=41% Similarity=0.606 Sum_probs=43.0
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCccc
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 64 (557)
|+|++|++++|.++..-+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755456677777777777777777766666777777777777777754
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-09 Score=75.85 Aligned_cols=61 Identities=38% Similarity=0.471 Sum_probs=41.1
Q ss_pred CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcC
Q 042089 391 TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 391 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l 451 (557)
++|++|++++|+++...+.++..+++|++|++++|+++...|.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766655555666677777777777777666566677777777777777764
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-08 Score=111.67 Aligned_cols=310 Identities=22% Similarity=0.233 Sum_probs=167.0
Q ss_pred CCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc--ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCc
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS--FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 202 (557)
...+...+-+|.+. .++... .+++|++|-+..|. +......-+..++.|++|||++|.--+.+|..++. +-+|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence 34566666666554 333322 45567776666664 22221111335677777777776655677777764 77788
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCcc--ccccCccccCcccccceecc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF--YGHIFPTYMNLTQLRGLYLK 280 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~ 280 (557)
+|+++++.+. .+|..+++++.|.+|++..+.....+ ......+++|++|.+..... .......+..+.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 8888887777 77778888888888888776644333 33444577788877765542 11222233445555555543
Q ss_pred cccccccccccccCCCCCc----EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhcc------CCCCcEEE
Q 042089 281 NNHFTGKIKAGLLNSHGLV----VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN------FRQLEILY 350 (557)
Q Consensus 281 ~n~~~~~~~~~l~~~~~L~----~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~ 350 (557)
..... +-..+.....|. .+.+.++. ....+..++.+.+|+.|.+.++.+.......... ++++..+.
T Consensus 677 ~~s~~--~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSVL--LLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchhH--hHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 33220 001111122222 22221211 1233445666778888888877765322221111 22333333
Q ss_pred ccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc-CCccccCCCCccEEEcCCCcccc
Q 042089 351 LSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR-IPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 351 L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
..++.....+......++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-.+.+.++++..+.+..=
T Consensus 754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~---- 829 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL---- 829 (889)
T ss_pred hhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCcc----
Confidence 33333222222223678899999998886656655666666666666666666554 3445555555555544322
Q ss_pred cCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
.|+.+.+..|+-.+.+|.
T Consensus 830 ----------~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 830 ----------KLEELIVEECPKLGKLPL 847 (889)
T ss_pred ----------chhheehhcCcccccCcc
Confidence 255555555555555553
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.9e-10 Score=102.50 Aligned_cols=155 Identities=25% Similarity=0.172 Sum_probs=82.4
Q ss_pred CcCEEeCCCCCCccc-CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcc-cCcccChhhhcCCCCCcEE
Q 042089 5 NLTELDLRENNLEGQ-LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN-FQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~g~~p~~~~~~l~~L~~L 82 (557)
.|+++|||...++.. +..-++.|++|+.|.|.++++...+-..+++-.+|+.|+|+.+. |+..--.-.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677777666532 33445667777777777777776666677777777777777654 3321111235566677777
Q ss_pred EecCccCcccccCCCCCC-CCcccEEECCCCCC----CCcChhhhCCCCCcEEEccCCc-CcCCCcHHHhhcCCCCCEEE
Q 042089 83 RLLKVSNNLRFKTENWIP-TFQLKVLQLPNCSL----KVIPSFLLHQYNLKFLDLSSNK-LVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l----~~ip~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~ 156 (557)
+++++....+........ ...|+.|+++++.- .++..-..+|++|.+|||++|. ++..+...++ +++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 776666543332211111 12455566655432 2333334455566666665543 3332223332 445555555
Q ss_pred ccCc
Q 042089 157 LSNN 160 (557)
Q Consensus 157 L~~n 160 (557)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 5444
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-09 Score=108.38 Aligned_cols=126 Identities=26% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
..++.+++..|.+.. +-..+..+++|++|++..|++.. +...+..+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhhe
Confidence 344445555555542 23345666666666666666663 22225566666666666666653322 44445555555
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcC
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKL 137 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l 137 (557)
+.+|.....- .+..+..|+.+++++|.+..+... +..+.+++.+++.+|.+
T Consensus 147 l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 147 LSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred eccCcchhcc---CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 5555443211 112234455555555554433332 23444444444444443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-08 Score=105.92 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=10.5
Q ss_pred CCCCccEEEccCCcccccc
Q 042089 365 NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 365 ~~~~L~~L~L~~n~l~~~~ 383 (557)
..+.++...+..|......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccccccccCcccccc
Confidence 4455566666666555433
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-09 Score=96.28 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=102.6
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCe-eeeecCcccccCCCCCcEE
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK-FSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L 253 (557)
.|+++||+...++..--..+...|++|+.|.+.++.+...+...++.-..|+.|+++.+. ++..-...+++.|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888777644444444567888888888888888887888888888888888764 5533344556778888888
Q ss_pred eccCCccccccCcccc--CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 254 DVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
++++|.+..+....+. --++|+.|+++++.-. -....+......|++|.+||+++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence 8888876543321111 1134555555544211 0000111122334445555555432
Q ss_pred -CCCCcchhhccCCCCcEEEccCccccccccc----ccCCCCccEEEccCCc
Q 042089 332 -LEGNIPVQINNFRQLEILYLSENRLFGSIAS----FLNLSSIMHLYLQKNA 378 (557)
Q Consensus 332 -l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~----~~~~~~L~~L~L~~n~ 378 (557)
++......+..++.|++|.++.|-. .+|. +...++|.+|++.++-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3333333444555555555555542 2222 1145666666666553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-07 Score=86.56 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=69.7
Q ss_pred ccCCccCCCCCCCCEEECCCCcCCccC-chhc-cCCCCCCEEeCcCcccCc--ccChhhhcCCCCCcEEEecCccCcccc
Q 042089 18 GQLPWRLSDLTGLKVFDISSNQLSGNL-PSVI-ANLTSLEYLVLSDNNFQG--EFPLSLLTNHSNLEVLRLLKVSNNLRF 93 (557)
Q Consensus 18 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l-~~l~~L~~L~Ls~n~l~g--~~p~~~~~~l~~L~~L~l~~~~~~~~~ 93 (557)
|..+-.++..+-++.+.+.++.+...- -..| ..++.++++||.+|.++. +|. ..+.++|.|++|+++.|+++..+
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCcc
Confidence 334444555556666666666554221 1233 357788889999988762 222 24567888888888888876554
Q ss_pred cCCCCCCCCcccEEECCCCCC--CCcChhhhCCCCCcEEEccCC
Q 042089 94 KTENWIPTFQLKVLQLPNCSL--KVIPSFLLHQYNLKFLDLSSN 135 (557)
Q Consensus 94 ~~~~~~~~~~L~~L~L~~n~l--~~ip~~l~~~~~L~~L~Ls~n 135 (557)
.... ....+|+.|-|.+..+ ......+..++.++.|.++.|
T Consensus 114 ~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 114 KSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4322 3445666676666665 444455555556666666655
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-08 Score=102.15 Aligned_cols=128 Identities=30% Similarity=0.297 Sum_probs=90.2
Q ss_pred CCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEe
Q 042089 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLID 205 (557)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 205 (557)
.|...+++.|.+. .+...+ +-++.++.|+|++|+++.. .....+++|++|||++|.+. .+|..--..|. |..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 3566677777776 444444 4678888889999888876 34557888899999998887 66653322343 88888
Q ss_pred CCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccc
Q 042089 206 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 206 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+.+|.++.. ..+.++++|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888887632 356788888889999888775433333445677888888888663
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.4e-07 Score=81.39 Aligned_cols=85 Identities=28% Similarity=0.464 Sum_probs=45.0
Q ss_pred CCCcCEEeCCCCCCccc----CCccCCCCCCCCEEECCCCcCCcc----Cc-------hhccCCCCCCEEeCcCcccCcc
Q 042089 3 LKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLSGN----LP-------SVIANLTSLEYLVLSDNNFQGE 67 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~Ls~n~l~g~ 67 (557)
+..++.++||+|.|... +...+++-++|++.++|.- ++|. +| ..+-+|++|+..+||.|.|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 34566667777766543 3334555566666666643 2221 22 2344566666666666666555
Q ss_pred cChh---hhcCCCCCcEEEecCcc
Q 042089 68 FPLS---LLTNHSNLEVLRLLKVS 88 (557)
Q Consensus 68 ~p~~---~~~~l~~L~~L~l~~~~ 88 (557)
.|+. .+++.+.|.+|.+.+|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 5532 23444555555555543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.6e-08 Score=99.97 Aligned_cols=124 Identities=28% Similarity=0.313 Sum_probs=58.3
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~ 400 (557)
|...+++.|.+. .+..++.-++.++.|+|++|+++. ......++.|.+|||++|.+. .+|. ....|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 334444445444 344444445555555555555543 223334555555555555555 3332 222233 55555555
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCC-ccccCCCCCCEEEccCCcC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIP-IALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip-~~l~~l~~L~~Ldls~N~l 451 (557)
|.++. -..+.++.+|+.||++.|-+.+.-- .-+..+..|+.|.|.+|++
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55532 1234455555555555555544321 1123444555555555555
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-07 Score=81.97 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred ccCcccccceecccccccccccc----cccCCCCCcEEEccCCccc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKA----GLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~----~l~~~~~L~~L~Ls~n~l~ 309 (557)
+..|++|+.+++++|.|....|. .+++...|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34555666666666655544333 2344456666666666543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-07 Score=75.38 Aligned_cols=109 Identities=24% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 345 QLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
.|+..+|++|.+....+.+. ..+.++.+++++|.++ .+|..++.++.|+.|+++.|++. ..|+.+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 34444555554443333333 3344555555555555 34544555555555555555553 444444445555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 424 ~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|... +||..+-.-...-..++.++++.+.-|
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 55544 344332222222233444444444433
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.1e-06 Score=54.31 Aligned_cols=37 Identities=41% Similarity=0.651 Sum_probs=23.6
Q ss_pred CCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccC
Q 042089 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65 (557)
Q Consensus 28 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 65 (557)
++|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35667777777776 45556677777777777777665
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-06 Score=79.83 Aligned_cols=204 Identities=17% Similarity=0.123 Sum_probs=119.6
Q ss_pred EEeCCCCCCccc--CCccCCCCCCCCEEECCCCcCCc--cCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 8 ELDLRENNLEGQ--LPWRLSDLTGLKVFDISSNQLSG--NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 8 ~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+.+.++.+... ....=..+++++.+||.+|.++. .+..-+.++|.|+.|+|+.|.+...|.. .-....+|++|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEE
Confidence 445555555432 11112456888888999888874 4445567888899999999888755542 113567888888
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCc--Chh-hh-CCCCCcEEEccCCcCcC--CCcHHHhhcCCCCCEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSF-LL-HQYNLKFLDLSSNKLVG--NFPTWLMQNNTNLEVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~-l~-~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L 157 (557)
+.+..+.-.........++.++.|.++.|.+..+ .+. .. -.+.+++|.+..|...- .+. .+..-++++..+.+
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFV 206 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchheee
Confidence 8777665333333455667778888887754211 110 00 01234444444442210 000 11224577888888
Q ss_pred cCccccCcccCC-cccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc
Q 042089 158 SNNSFSGILQLP-KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213 (557)
Q Consensus 158 ~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 213 (557)
..|.+....... +..++.+..|.|+.+++.......-...+++|+.|.++++.+..
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888665442221 22556666788888887644333333457889999999987753
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.3e-07 Score=87.89 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=88.7
Q ss_pred Ccccccceeccccccccccc--ccccCCCCCcEEEccCCc-ccCccCccc-cCCCCCcEEEcCCCcCC--CCcchhhccC
Q 042089 270 NLTQLRGLYLKNNHFTGKIK--AGLLNSHGLVVLDISNNL-LSGHIPCWI-GNFSYLDVLLMSKNHLE--GNIPVQINNF 343 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~--~~l~~~~~L~~L~Ls~n~-l~~~~p~~l-~~~~~L~~L~l~~n~l~--~~~~~~l~~l 343 (557)
.+..|+.++.+++...+..+ .--.++++|+++.++.++ |+..--..+ .+++.|+.+++.++... +.+...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45566666666654432211 112345677777777764 333322233 24667777777776543 2233334567
Q ss_pred CCCcEEEccCccccccc-----cccc-CCCCccEEEccCCcc-cccchhhhhcCCCCcEEeCCCCccc-cc-CCccccCC
Q 042089 344 RQLEILYLSENRLFGSI-----ASFL-NLSSIMHLYLQKNAL-SGQIPSTLLRSTELLTLDLRDNKFF-GR-IPHQINKH 414 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i-----~~~~-~~~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L~~N~l~-~~-~p~~l~~l 414 (557)
+.|+.+.++++...... .... ....++.+.|+++.. ++..-..+..|++|+.+++-.++-. .+ +...-.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88888888887653321 1222 567788888888874 4445567788889998888777532 11 22222457
Q ss_pred CCccEEEc
Q 042089 415 SELRVLLL 422 (557)
Q Consensus 415 ~~L~~L~L 422 (557)
|++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 77766544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.9e-06 Score=89.07 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCEEeCcCccc-CcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEE
Q 042089 52 TSLEYLVLSDNNF-QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFL 130 (557)
Q Consensus 52 ~~L~~L~Ls~n~l-~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L 130 (557)
.+|++||+++... ...-|...-..+|.|++|.+.+-.+...--.....+.++|..||++++++..+ ..++++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4678888877542 22222233345777888877776553221111234566777777777777666 667777777777
Q ss_pred EccCCcCcC-CCcHHHhhcCCCCCEEEccCccccCcccCC------cccCCCccEEECcCCcCcCCCchhHhhhccCCcE
Q 042089 131 DLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGILQLP------KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML 203 (557)
Q Consensus 131 ~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 203 (557)
.+.+-.+.. .--..+| ++++|++||+|.........+. ...+++|+.||.+++.+.+.+-+.+-..-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777666552 2223455 6777777777766544331111 1245566666666665554444443333333433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.4e-07 Score=73.06 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEcc
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQ 375 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~ 375 (557)
..|+..++++|.+....+..-.+.+.++.+++++|.++ .+|..+..++.|+.|+++.|++......+..+.++-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34555566666665433333334456666666666666 55666666666666666666665444333345555555555
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
+|... ++|..+.-.+.....+++++.+.+.-+
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 55554 344333333333344445555544443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.6e-05 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=23.5
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 416 ~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5667777777776 45556677777777777777766
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.2e-07 Score=87.98 Aligned_cols=135 Identities=17% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCCccEEECcCCcC-cCCCchhHhhhccCCcEEeCCCCc-CcccCCccc-cCCCCCcEEEcCCCeee-eecCcccccCCC
Q 042089 173 HDFLRHLDISNNNL-IGTLPQNMGTVLQKLMLIDISKNN-FEGNIPYSI-GEMKELFLLDLSRNKFS-GDLSATSVNGCA 248 (557)
Q Consensus 173 ~~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~ 248 (557)
+..|+.|+.+++.. +...-..++..+.+|+++-++.++ ++..-...+ .+++.|+.+++..+... ..--.....+|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44455555554432 222223344445566666665554 221111111 24556666666555421 111112234567
Q ss_pred CCcEEeccCCcccccc-----CccccCcccccceeccccccc-ccccccccCCCCCcEEEccCCc
Q 042089 249 SLEYLDVSENNFYGHI-----FPTYMNLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNL 307 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~~~~L~~L~Ls~n~ 307 (557)
.|+.+.++++.....- ...-..+..++.+.++++..+ ...-..+..+++|+.+++-.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777766442111 111224556777777777543 2333455667788887776654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=2.4e-05 Score=84.93 Aligned_cols=146 Identities=22% Similarity=0.266 Sum_probs=77.6
Q ss_pred CcCEEeCCCCCCc-ccCCccC-CCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 5 NLTELDLRENNLE-GQLPWRL-SDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 5 ~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
+|++||+++...- ..=|..+ ..+|.|+.|.+++-.+...- -....++++|+.||+|++.++. + ..++++++|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccccHHH
Confidence 5677777775422 1112222 35677777777776554332 2333467777777777777662 2 34667777777
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-------hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-------FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE 153 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 153 (557)
|.+.+-.+........++.+++|++||+|......-+. .-..+++|+.||.|+..+.+.+-+.+...-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77666555432222234556666666666655422221 1112456666666665555444444433333333
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=65.37 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=44.3
Q ss_pred CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
....+||+.|.+... +.|..++.|..|.|.+|+|+ .|.+..-..+++|+.|.+.+|++........+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455666666665422 34556666666777766666 333343444555666666665554322222334455555555
Q ss_pred CCCCCC
Q 042089 109 LPNCSL 114 (557)
Q Consensus 109 L~~n~l 114 (557)
+-+|..
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 555544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=69.15 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=14.2
Q ss_pred cccEEECCCC-CCCCcChhhhCCCCCcEEEccCCc
Q 042089 103 QLKVLQLPNC-SLKVIPSFLLHQYNLKFLDLSSNK 136 (557)
Q Consensus 103 ~L~~L~L~~n-~l~~ip~~l~~~~~L~~L~Ls~n~ 136 (557)
.|++|.+++| .+..+|. +|+.|+++.+.
T Consensus 95 nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 95 GLEKLTVCHCPEISGLPE------SVRSLEIKGSA 123 (426)
T ss_pred hhhheEccCccccccccc------ccceEEeCCCC
Confidence 4556666555 3344443 35555555443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00045 Score=58.67 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=51.7
Q ss_pred ccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCC
Q 042089 22 WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT 101 (557)
Q Consensus 22 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 101 (557)
..|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +. .++...+.++++++.+.+.+. ...++...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc--cccccccccccc
Confidence 3566777777777764 455444556777777777777664 44 555556666666777776431 112333344455
Q ss_pred CcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC
Q 042089 102 FQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL 152 (557)
Q Consensus 102 ~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 152 (557)
.+|+.+.+..+ +..++.. +.++ +++.+.+.. .+. .++...|.+|++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 66666666543 4333332 3333 566666554 233 4455555555554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00073 Score=67.95 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=81.8
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCC-cCCCCcchhhccCCCC
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNFRQL 346 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L 346 (557)
+..+.+++.|++++|.++ .+|. + ..+|+.|+++++.--..+|..+. ++|+.|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 344678899999999877 4452 2 34799999987544345565443 57888999888 443 4553 46
Q ss_pred cEEEccCcccccccccccCCCCccEEEccCCccc--ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALS--GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 347 ~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
+.|+++.+.... ++. -.++|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|+.|.++.
T Consensus 115 e~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcc-ccc--CcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 777776654321 111 1235667766543311 1112111 257888888887754 3343333 4678888876
Q ss_pred Cc
Q 042089 425 NY 426 (557)
Q Consensus 425 N~ 426 (557)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00096 Score=56.63 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred cccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCC
Q 042089 218 SIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297 (557)
Q Consensus 218 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~ 297 (557)
+|.++++|+.+.+.. .+. .++...+..+++++.+.+..+ +...-...+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344555555555543 232 444455555555555555543 3322223344444555555543 222122334444556
Q ss_pred CcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCC
Q 042089 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346 (557)
Q Consensus 298 L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 346 (557)
++.+++..+ +...-...+.++ .++.+.+.. .+......+|.+|++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666443 333333445554 555555554 3333334445555444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00067 Score=60.38 Aligned_cols=85 Identities=26% Similarity=0.332 Sum_probs=66.7
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
.+...+||++|.+... ..|..+++|..|.|++|+++.+-|.--.-+++|..|.|.+|++..-....-+..|++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3567889999987632 46788999999999999999766655556788999999999986322222377899999999
Q ss_pred ecCccCc
Q 042089 84 LLKVSNN 90 (557)
Q Consensus 84 l~~~~~~ 90 (557)
+-+|...
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 9988764
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00027 Score=39.30 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=18.9
Q ss_pred ccceEEccCCcCcccCChhhhCC
Q 042089 533 YMSGMDLSYNELTGEIPSEIGEL 555 (557)
Q Consensus 533 ~l~~ldls~N~l~G~iP~~~~~l 555 (557)
+|+.||||+|+|+ +||+++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3678999999999 999998875
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00091 Score=62.04 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCccEEEccCC--cccccchhhhhcCCCCcEEeCCCCcccccCCcc---ccCCCCccEEEcCCCcccc
Q 042089 366 LSSIMHLYLQKN--ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ---INKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 366 ~~~L~~L~L~~n--~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~L~~N~l~g 429 (557)
+++|+.|.++.| +.++.++....++++|+++++++|++.. +.. +..+.+|..|++..|..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 444444444444 3333333334444555555555555432 222 2334445555555554443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0013 Score=61.02 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=55.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCc--ccCcccChhhhcCCCCCcEEEecCccCcccccCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN--NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN 97 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 97 (557)
+......+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+.++. ...++++|++|++++|.+...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~l----- 106 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDL----- 106 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccc-----
Confidence 444555556666666666655522 23445666777777777 34433332 123335555555544443210
Q ss_pred CCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcC--CCcHHHhhcCCCCCEEE
Q 042089 98 WIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVG--NFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 98 ~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~ 156 (557)
..++ -+..+.+|..||+.+|..+. .--..+|.-+++|++|+
T Consensus 107 -----------------stl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 107 -----------------STLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -----------------cccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 1111 23445566677776665442 11123444566676664
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=6.8e-05 Score=69.67 Aligned_cols=87 Identities=23% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+.+.+.|+..+|.++.. ....+++.|++|.||-|.++..- .+..|++|++|+|..|.|...--...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45678899999988743 23567899999999999998553 478899999999999988744333457788888888
Q ss_pred EecCccCcccc
Q 042089 83 RLLKVSNNLRF 93 (557)
Q Consensus 83 ~l~~~~~~~~~ 93 (557)
.+..|.-.+..
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 88887665443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00024 Score=75.31 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=9.3
Q ss_pred hccCCCCcEEEccCcc
Q 042089 340 INNFRQLEILYLSENR 355 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~ 355 (557)
...|+.++.+.+.++.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455666666666555
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.00065 Score=71.95 Aligned_cols=175 Identities=20% Similarity=0.066 Sum_probs=94.9
Q ss_pred CCCCCcEEEccCCc-CcCCCcHHHhhcCCCCCEEEccCc-cccCccc----CCcccCCCccEEECcCCc-CcCCCchhHh
Q 042089 123 HQYNLKFLDLSSNK-LVGNFPTWLMQNNTNLEVLRLSNN-SFSGILQ----LPKVKHDFLRHLDISNNN-LIGTLPQNMG 195 (557)
Q Consensus 123 ~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 195 (557)
.++.|+.+.+..+. ++..--..+...++.|+.|+++.+ ....... .....+.+|+.|+++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777888777663 332112233447788888888763 1111100 111245778888888877 5555555666
Q ss_pred hhccCCcEEeCCCCc-CcccCC-ccccCCCCCcEEEcCCCeee-eecCcccccCCCCCcEEeccCCccccccCccccCcc
Q 042089 196 TVLQKLMLIDISKNN-FEGNIP-YSIGEMKELFLLDLSRNKFS-GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272 (557)
Q Consensus 196 ~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (557)
..|++|+.|.+..+. ++..-- .....++.|++|+++.+... ...-......|++++.+.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 667888888877666 443222 22345777888888877643 221112244577776655433211 33
Q ss_pred cccceeccccccc---ccccccccCCCCCcEEEccCCc
Q 042089 273 QLRGLYLKNNHFT---GKIKAGLLNSHGLVVLDISNNL 307 (557)
Q Consensus 273 ~L~~L~L~~n~~~---~~~~~~l~~~~~L~~L~Ls~n~ 307 (557)
.++.+.+....-. .........++.++.+.+..+.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4444444433221 1122234456677777776665
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0016 Score=36.12 Aligned_cols=20 Identities=65% Similarity=0.904 Sum_probs=11.6
Q ss_pred CCEEEccCCcCcCCcCccccc
Q 042089 441 LRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 441 L~~Ldls~N~l~g~ip~~~~~ 461 (557)
|++||+++|+++ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 56655443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.00038 Score=64.83 Aligned_cols=86 Identities=29% Similarity=0.286 Sum_probs=48.3
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCc-ccCCCccEEEC
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK-VKHDFLRHLDI 181 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L 181 (557)
+.+.|++.+|.+..|. ...+++.|++|.|+-|+++.--| +..|++|++|+|..|.+.....+.. .++++|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4566666666665553 34456667777777776663322 2466666666666666655422221 25556666666
Q ss_pred cCCcCcCCCch
Q 042089 182 SNNNLIGTLPQ 192 (557)
Q Consensus 182 ~~n~l~~~~~~ 192 (557)
..|.-.|..+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 66555544443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.00081 Score=70.05 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCcEEeccCCccccccC----ccccCcccccceeccccccccccc----ccccCC-CCCcEEEccCCcccCc----cCcc
Q 042089 249 SLEYLDVSENNFYGHIF----PTYMNLTQLRGLYLKNNHFTGKIK----AGLLNS-HGLVVLDISNNLLSGH----IPCW 315 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~~-~~L~~L~Ls~n~l~~~----~p~~ 315 (557)
.+..+.|.+|.+..... ..+...+.|+.|+++.|.+.+..- ..+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36777788877754322 233456677777777777763211 112221 4455666666665532 3334
Q ss_pred ccCCCCCcEEEcCCCcC
Q 042089 316 IGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l 332 (557)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455566666666655
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.00078 Score=70.17 Aligned_cols=87 Identities=25% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCCcEEEcCCCeeeeecCcc---cccCCCCCcEEeccCCccccccCc----cccCc-ccccceeccccccccc----ccc
Q 042089 223 KELFLLDLSRNKFSGDLSAT---SVNGCASLEYLDVSENNFYGHIFP----TYMNL-TQLRGLYLKNNHFTGK----IKA 290 (557)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l-~~L~~L~L~~n~~~~~----~~~ 290 (557)
..+..+.+.+|.+....... .......|+.|++++|.+.+.-.. .+... ..+++|.+..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 44778888888876443222 234567888899999988743221 22222 5677788888877753 455
Q ss_pred cccCCCCCcEEEccCCccc
Q 042089 291 GLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 291 ~l~~~~~L~~L~Ls~n~l~ 309 (557)
.+.....++.++++.|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccchhHHHHHhcccc
Confidence 6666788889999988774
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.11 Score=26.65 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=4.7
Q ss_pred CCCEEeCcCcccC
Q 042089 53 SLEYLVLSDNNFQ 65 (557)
Q Consensus 53 ~L~~L~Ls~n~l~ 65 (557)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.2 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=13.6
Q ss_pred CCCCCEEeCcCcccCcccChhhh
Q 042089 51 LTSLEYLVLSDNNFQGEFPLSLL 73 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~g~~p~~~~ 73 (557)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.2 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=13.6
Q ss_pred CCCCCEEeCcCcccCcccChhhh
Q 042089 51 LTSLEYLVLSDNNFQGEFPLSLL 73 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~g~~p~~~~ 73 (557)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777766 5565443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.48 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=13.1
Q ss_pred CCCcEEEccCCcCcCCCcHHHh
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~ 146 (557)
++|++|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.48 Score=27.24 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=13.1
Q ss_pred CCCcEEEccCCcCcCCCcHHHh
Q 042089 125 YNLKFLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~ 146 (557)
++|++|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565554
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.12 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.2
Q ss_pred CccceEEccCCcCcccCChhhh
Q 042089 532 NYMSGMDLSYNELTGEIPSEIG 553 (557)
Q Consensus 532 ~~l~~ldls~N~l~G~iP~~~~ 553 (557)
+.|+.|||++|+++++.+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5788999999999998887775
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=84.32 E-value=0.5 Score=26.56 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=4.6
Q ss_pred CCcEEeCCCCccc
Q 042089 392 ELLTLDLRDNKFF 404 (557)
Q Consensus 392 ~L~~L~L~~N~l~ 404 (557)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.48 E-value=0.041 Score=50.34 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 367 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
...+.||++.|++- ..-..+..++.+..||++.|++ .-.|..++....++.+++..|..+ ..|.++...+.++.+|+
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34444555555443 2223344455566666666665 345555665566666666666665 66667777777777777
Q ss_pred cCCcCcCC
Q 042089 447 SHNKLNGS 454 (557)
Q Consensus 447 s~N~l~g~ 454 (557)
-.|+|...
T Consensus 119 k~~~~~~~ 126 (326)
T KOG0473|consen 119 KKTEFFRK 126 (326)
T ss_pred ccCcchHH
Confidence 77776533
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=0.19 Score=45.14 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee-cCcccccCCCCCcEEeccCC-ccccccCccccCcccccce
Q 042089 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD-LSATSVNGCASLEYLDVSEN-NFYGHIFPTYMNLTQLRGL 277 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 277 (557)
.++.+|.++..+...--..+.+++.++.|.+.++.--+. --..+..-.++|+.|++++| +|+..-...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666665544445556666666666666652211 11111122355666666654 3333333344445555555
Q ss_pred eccc
Q 042089 278 YLKN 281 (557)
Q Consensus 278 ~L~~ 281 (557)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 557 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-46 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-07 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-46 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-07 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-12 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-11 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 1e-04 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 2e-04 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 5e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-125
Identities = 167/568 (29%), Positives = 252/568 (44%), Gaps = 26/568 (4%)
Query: 3 LKNLTELDLRENNLEGQLPWR--LSDLTGLKVFDISSNQLSGNLP-SVIANLTSLEYLVL 59
+LT LDL N+L G + L +GLK ++SSN L S L SLE L L
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF---QLKVLQLPNCSLKV 116
S N+ G + + + L+ L +S N K + L+ L + + +
Sbjct: 159 SANSISGANVVGWVLS-DGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
FL L+ LD+S NKL G+F + T L++L +S+N F G +P + L
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVG--PIPPLPLKSL 271
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
++L ++ N G +P + L +D+S N+F G +P G L L LS N FS
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFTGKIKAGLLNS 295
G+L ++ L+ LD+S N F G + + NL+ L L L +N+F+G I L +
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 296 --HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353
+ L L + NN +G IP + N S L L +S N+L G IP + + +L L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 354 NRLFGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQIN 412
N L G I + + ++ L L N L+G+IPS L T L + L +N+ G IP I
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 413 KHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDL 472
+ L +L L N G IP L + L LDL+ N NG+IP+ + +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFI 570
Query: 473 YGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFV--TKNRY---EFYN 527
G Y + + L L++ + T Y
Sbjct: 571 AGK---RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 528 GSSLNYMSGMDLSYNELTGEIPSEIGEL 555
+ M +D+SYN L+G IP EIG +
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-108
Identities = 159/579 (27%), Positives = 224/579 (38%), Gaps = 107/579 (18%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L LD+ N L G +S T LK+ +ISSNQ G +P L SL+YL L++
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N F GE P L L L L N+ +P F
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDL--SGNHFYGA----------------------VPPFF 314
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKV---KHDFLRH 178
L+ L LSSN G P + L+VL LS N FSG +LP+ L
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLT 372
Query: 179 LDISNNNLIGTLPQNMG-TVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
LD+S+NN G + N+ L + + N F G IP ++ EL L LS N SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297
+ + S+ + L L + N G I M + L L L N TG+I +GL N
Sbjct: 433 TIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLF 357
L + +SNN L+G IP WIG L +L +S N GNIP ++ + R L L L+ N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 358 GSI-ASFLNLSSIM----------------------HLYLQKNALSGQIPSTLLRSTELL 394
G+I A+ S + H G L R +
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 395 TLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454
++ + G + + + L + N L G IP + + L IL+L HN ++GS
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 455 IPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDL---WLSRDDYATLHQ 511
IP + G LR + + LDL L +
Sbjct: 672 IPD------------------------EVGDLRGL-----NILDLSSNKLDGRIPQAM-- 700
Query: 512 RAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPS 550
S+L ++ +DLS N L+G IP
Sbjct: 701 -----------------SALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = 2e-99
Identities = 150/474 (31%), Positives = 222/474 (46%), Gaps = 29/474 (6%)
Query: 5 NLTELDLRENNLE---GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+T +DL L + L LTGL+ +S++ ++G++ SL L LS
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109
Query: 62 NNFQGEFPLSL-LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPS 119
N+ G L + S L+ L + + + K + L+VL L S+
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 120 FLLHQYN---LKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG----ILQLPKVK 172
+ LK L +S NK+ G+ + NLE L +S+N+FS +
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSA-- 224
Query: 173 HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
L+HLDIS N L G + + T +L L++IS N F G IP +K L L L+
Sbjct: 225 ---LQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278
Query: 233 NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI-KAG 291
NKF+G++ C +L LD+S N+FYG + P + + + L L L +N+F+G++
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 292 LLNSHGLVVLDISNNLLSGHIPCWIGNFSY-LDVLLMSKNHLEGNIPVQINNF--RQLEI 348
LL GL VLD+S N SG +P + N S L L +S N+ G I + L+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 349 LYLSENRLFGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRI 407
LYL N G I + N S ++ L+L N LSG IPS+L ++L L L N G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 408 PHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
P ++ L L+L N L GEIP L L + LS+N+L G IP
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 2e-69
Identities = 109/393 (27%), Positives = 171/393 (43%), Gaps = 49/393 (12%)
Query: 5 NLTELDLRENNLEGQLPWRL--SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+L LDL NN G + L + L+ + +N +G +P ++N + L L LS N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK-VIPSFL 121
G P SL + S L L+L N L+ IP L
Sbjct: 429 YLSGTIPSSL-GSLSKLRDLKL---WLN----------------------MLEGEIPQEL 462
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG-----ILQLPKVKHDFL 176
++ L+ L L N L G P+ L N TNL + LSNN +G I +L L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLEN-----L 516
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
L +SNN+ G +P +G + L+ +D++ N F G IP ++ + ++ N +
Sbjct: 517 AILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIA 571
Query: 237 GDLSATSVNGCASLEYLDVSEN--NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
G + + + N F G L+ + + + G N
Sbjct: 572 GKRYV-YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
+ ++ LD+S N+LSG+IP IG+ YL +L + N + G+IP ++ + R L IL LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 355 RLFGSI-ASFLNLSSIMHLYLQKNALSGQIPST 386
+L G I + L+ + + L N LSG IP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 4e-67
Identities = 112/429 (26%), Positives = 186/429 (43%), Gaps = 52/429 (12%)
Query: 148 NNTNLEVLRLSNNSFSGIL-QLPK--VKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLI 204
+ + + LS+ + + + L L +SN+++ G++ L +
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC--SASLTSL 105
Query: 205 DISKNNFEGNIP--YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG 262
D+S+N+ G + S+G L L++S N + SLE LD+S N+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 263 HIFPTYM---NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319
++ +L+ L + N +G + + L LD+S+N S IP ++G+
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIP-FLGDC 222
Query: 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNAL 379
S L L +S N L G+ I+ +L++L +S N+ G I L S+ +L L +N
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKF 281
Query: 380 SGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPI-ALCQ 437
+G+IP L + L LDL N F+G +P S L L L N GE+P+ L +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 438 LQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYF-QFGG--LRSIGTYYN 494
++ L++LDLS N+ +G +P N+ L LD+ F G L ++
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLS------ASL--LTLDLSSNNFSGPILPNLCQNPK 393
Query: 495 STLDLWLSRDDYATLHQRAQVQFVTKNR------YEFYNGSSLNYMSGMDLSYNELTGEI 548
+TL Q ++ N N S L + LS+N L+G I
Sbjct: 394 NTL----------------QELYLQNNGFTGKIPPTLSNCSELVS---LHLSFNYLSGTI 434
Query: 549 PSEIGELPK 557
PS +G L K
Sbjct: 435 PSSLGSLSK 443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 4e-52
Identities = 82/338 (24%), Positives = 138/338 (40%), Gaps = 56/338 (16%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L +L L N LEG++P L + L+ + N L+G +PS ++N T+L ++ LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
+N GE P + L+
Sbjct: 499 NNRLTGEIPKWI---------------------------------------GRLE----- 514
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
NL L LS+N GN P L + +L L L+ N F+G +P F +
Sbjct: 515 -----NLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNG--TIP--AAMFKQSGK 564
Query: 181 ISNNNLIGTLPQNMGT-VLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
I+ N + G + ++K + F+G + + +++ + G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
S + + S+ +LD+S N G+I ++ L L L +N +G I + + GL
Sbjct: 625 S-PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337
+LD+S+N L G IP + + L + +S N+L G IP
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-63
Identities = 105/484 (21%), Positives = 171/484 (35%), Gaps = 30/484 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
N+T L+L N L + + L D+ N +S P + L L+ L L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSFL 121
+NL L L +SN+++ N L L L + L
Sbjct: 84 ELSQ-LSDKTFAFCTNLTELHL--MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 122 LHQ-YNLKFLDLSSNKLVGNFPTWL-MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
Q NL+ L LS+NK+ L + N++L+ L LS+N L L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 180 DISNNNLIGTLPQNMGTVLQ--KLMLIDISKNNFEGNIPYSIGEMKELFL--LDLSRNKF 235
++N L +L + + L + + +S + + +K L LDLS N
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+ + S LEY + NN + L +R L LK + I L
Sbjct: 261 NV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 296 ---------HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR-- 344
L L++ +N + G L L +S + + F
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL-RTLTNETFVSL 378
Query: 345 ---QLEILYLSENRLFGSIA-SFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLR 399
L IL L++N++ + +F L + L L N + ++ R + + L
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQG--EIPIALCQLQKLRILDLSHNKLNGSIPS 457
NK+ + L+ L+LR L+ P L+ L ILDLS+N +
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 458 CFAN 461
Sbjct: 499 MLEG 502
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-62
Identities = 123/580 (21%), Positives = 189/580 (32%), Gaps = 67/580 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
LT LD+ N + P L LKV ++ N+LS A T+L L L N
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPS-- 119
+ Q + NL L L N L + L+ L L N ++ + S
Sbjct: 108 SIQK-IKNNPFVKQKNLITLDL--SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 120 -FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ---LPKVKHDF 175
+ +LK L+LSSN++ P L L L+N L ++ +
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 176 LRHLDISNNNLIGTLPQNM-GTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
+R+L +SN+ L T G L ++D+S NN S + +L L N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM---------NLTQLRGLYLKNNHFT 285
L + S++G ++ YL++ + I + L L L +++N
Sbjct: 284 IQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPC----WIGNFSYLDVLLMSKNHLEGNIPVQIN 341
G L L +SN+ S S L +L ++KN + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 342 NFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399
LE+L L N + + + L +I +YL N ++ L L LR
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 400 DNKF--FGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
P L +L L N + L L+KL ILDL HN L
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 458 CFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQF 517
+ GL + L+L F
Sbjct: 523 ANPG----------------GPIYFLKGLSHL-----HILNL-------------ESNGF 548
Query: 518 VTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
F + L + DL N L S
Sbjct: 549 DEIPVEVFKDLFELKII---DLGLNNLNTLPASVFNNQVS 585
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 4e-61
Identities = 101/487 (20%), Positives = 169/487 (34%), Gaps = 35/487 (7%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDL--TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L+NL EL L N ++ L + LK ++SSNQ+ P + L L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI---PTFQLKVLQLPNCSLKVI 117
+ L +N + L ++ L + L +L L +L V+
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 118 PSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL---QLPKVKH 173
+ L++ L N + F L N+ L L + + LPK+
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 174 DF------LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG----EMK 223
L HL++ +N++ G + NM T L L + +S + +
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNN 282
L +L+L++NK S + + + + LE LD+ N + + L + +YL N
Sbjct: 382 PLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 283 HFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 340
+ + L L + L P L +L +S N++ +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 341 NNFRQLEILYLSENRL---------FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRST 391
+LEIL L N L G I LS + L L+ N
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 392 ELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALC-QLQKLRILDLSHNK 450
EL +DL N N L+ L L+ N + + L LD+ N
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Query: 451 LNGSIPS 457
+ + S
Sbjct: 621 FDCTCES 627
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 1e-57
Identities = 116/585 (19%), Positives = 188/585 (32%), Gaps = 60/585 (10%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ D L Q+P L T + V +++ NQL + + L L + N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI-PTFQLKVLQLPNCSLKVIPSFLL- 122
P L L+VL L N L ++ L L L + S++ I +
Sbjct: 62 SKLEP-ELCQKLPMLKVLNL--QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ--LPKVKHDFLRHLD 180
Q NL LDLS N L NL+ L LSNN + L + L+ L+
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGE---MKELFLLDLSRNKFSG 237
+S+N I + +L + ++ ++ + + L LS ++ S
Sbjct: 178 LSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 238 DLSATSVN-GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
+ T + +L LD+S NN ++ L QL +L+ N+ L
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 297 GLVVLDISNNL---------LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347
+ L++ + L L+ L M N + G L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 348 ILYLSENRLF-----GSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
L LS + L S + L L KN +S L LDL N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 403 FFGRIPHQ-INKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG--SIPSCF 459
+ Q + + L N + + L+ L L L S PS F
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 460 AN-----VLFWREGNGDLYGSGLD--IYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQR 512
+L DL + + GL + L L ++ A L +
Sbjct: 477 QPLRNLTIL-------DLSNNNIANINDDMLEGLEKLEI-------LDLQHNNLARLWKH 522
Query: 513 AQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
A Y S L+ ++L N +L +
Sbjct: 523 A---NPGGPIYFLKGLSHLHI---LNLESNGFDEIPVEVFKDLFE 561
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 4e-57
Identities = 89/482 (18%), Positives = 149/482 (30%), Gaps = 60/482 (12%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIA---NLTSLEYL 57
+L +L+L N ++ P + L +++ QL +L + TS+ L
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 58 VLSDNNFQGEFPLSLL-TNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKV 116
LS++ + L +NL +L L S N L V+
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDL---SYN------------NLNVV--------- 263
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
L++ L N + F L N+ L L +
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRS---------------F 307
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
IS +L + L+ L +++ N+ G + L L LS + S
Sbjct: 308 TKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 237 -GDLSATSVNGCA--SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL 293
L+ + A L L++++N + L L L L N ++
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 294 -NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEILY 350
+ + +S N L L++ + L+ + P R L IL
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 351 LSENRLFGSIAS-FLNLSSIMHLYLQKNALS--------GQIPSTLLRSTELLTLDLRDN 401
LS N + L + L LQ N L+ G L + L L+L N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
F EL+++ L N L L+ L+L N + F
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 462 VL 463
Sbjct: 607 AF 608
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 5e-50
Identities = 92/438 (21%), Positives = 151/438 (34%), Gaps = 40/438 (9%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+K NLT LDL NNL + L L+ F + N + + L ++ YL L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
+ + L+ L + L L+ L + + + I S
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWL-----------------KCLEHLNMEDNDIPGIKSN 347
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFP---TWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
+ NLK+L LS++ T++ ++ L +L L+ N S I L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
LD+ N + L L+ + I +S N + S + L L L R
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 237 G-DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
D S + +L LD+S NN L +L L L++N+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---------- 517
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
+ + G ++ S+L +L + N + + +L+I+ L N
Sbjct: 518 ------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571
Query: 356 LFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQINK 413
L AS F N S+ L LQKN ++ + L LD+R N F
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631
Query: 414 HSELRVLLLRGNYLQGEI 431
+ + L
Sbjct: 632 VNWINETHTNIPELSSHY 649
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 4e-42
Identities = 70/318 (22%), Positives = 119/318 (37%), Gaps = 13/318 (4%)
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISK 208
+ EV S+ + + P + L++++N L N +L +D+
Sbjct: 3 TVSHEVADCSHLKLTQV---PDDLPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGF 58
Query: 209 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268
N P ++ L +L+L N+ S LS + C +L L + N+ +
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF--SYLDVLL 326
+ L L L +N + + L L +SNN + + F S L L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 327 MSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS----FLNLSSIMHLYLQKNALSGQ 382
+S N ++ P + +L L+L+ +L S+ L +SI +L L + LS
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 383 IPSTL--LRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQK 440
+T L+ T L LDL N +L L N +Q +L L
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 441 LRILDLSHNKLNGSIPSC 458
+R L+L + SI
Sbjct: 298 VRYLNLKRSFTKQSISLA 315
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 8e-62
Identities = 96/479 (20%), Positives = 155/479 (32%), Gaps = 29/479 (6%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L+ L L N ++ S L+ L+ L+ I +L +L+ L ++ N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP-----TFQLKVLQLPNCSLKVI 117
Q +N +NLE L L SN ++ + L L + I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
+ L L L +N N +Q LEV RL F L K L
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 178 --------HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLD 229
++ + ++ L + + E +S L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLE 310
Query: 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNH--FTGK 287
L KF + SL+ L + N G + ++L L L L N F G
Sbjct: 311 LVNCKFGQFPT----LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQL 346
+ L LD+S N + + L+ L ++L+ + + R L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 347 EILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFF 404
L +S + F LSS+ L + N+ + L LDL +
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 405 GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
P N S L+VL + N L L++LD S N + S +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 3e-56
Identities = 102/476 (21%), Positives = 167/476 (35%), Gaps = 31/476 (6%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ LDL N L + L+V D+S ++ +L+ L L+L+ N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKV--IPSFL 121
Q L + S+L+ L V NL I LK L + + ++ +P +
Sbjct: 89 QS-LALGAFSGLSSLQKLVA--VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEV----LRLSNNSFSGILQLPKVKHDFLR 177
+ NL+ LDLSSNK+ + T L + + + L LS N + I Q K L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLH 203
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGN------IPYSIGEMKELFL--LD 229
L + NN + + L L + + F ++ + L +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289
L+ + D N ++ + + + L L N F
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 290 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL--EGNIPVQINNFRQLE 347
L + L + L+ L +S+N L +G L+
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 348 ILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGR 406
L LS N + ++FL L + HL Q + L ++ S L+ LD+
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 407 IPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
N S L VL + GN Q P +L+ L LDLS +L P+ F +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 1e-54
Identities = 95/463 (20%), Positives = 162/463 (34%), Gaps = 55/463 (11%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVF----DISSNQLSGNLPSVIANLTSLEYL 57
L NL LDL N ++ L L + + D+S N ++ P + L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205
Query: 58 VLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
L +N + + + LEV RL+ F+ E + F L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLV----LGEFRNEGNLEKFDKSALEG-------- 253
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
L ++ L+ + L TN+ L + + + + +
Sbjct: 254 ----LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQ 307
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
HL++ N G P L++L + +G +S ++ L LDLSRN S
Sbjct: 308 HLELVNCKF-GQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 238 -DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL-NS 295
+ S G SL+YLD+S N + ++ L QL L ++++ + + +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
L+ LDIS+ S L+VL M+ N + N I
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--------------- 465
Query: 356 LFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
F L ++ L L + L P+ + L L++ N FF +
Sbjct: 466 -------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 416 ELRVLLLRGNYLQGEIPIALCQL-QKLRILDLSHNKLNGSIPS 457
L+VL N++ L L L+L+ N +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 3e-45
Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 33/448 (7%)
Query: 34 DISSNQLSGNLPSVIANL-TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR 92
+I+ + N + NL S + L LS N + S + L+VL L ++
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS--RCEIQ 65
Query: 93 FKTENWIPTF-QLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNT 150
+ + L L L ++ + +L+ L L + +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI-GHLK 124
Query: 151 NLEVLRLSNNSFSGILQLPKVKHDF--LRHLDISNNNLIGTLPQNMGTVLQ---KLMLID 205
L+ L +++N +LP+ + L HLD+S+N + ++ + Q + +D
Sbjct: 125 TLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 206 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-- 263
+S N P + E++ L L L N S ++ T + G A LE + F
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 264 ----IFPTYMNLTQLRGLYL---KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI 316
L L +++ I + + + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--F 300
Query: 317 GNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQK 376
L + +++ + ++L F S ++L S+ L L +
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLSR 356
Query: 377 NALS--GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPI- 433
N LS G + +T L LDL N + +L L + + L+
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 434 ALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L+ L LD+SH + F
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNG 443
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 8e-42
Identities = 75/390 (19%), Positives = 137/390 (35%), Gaps = 30/390 (7%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD---LTGLKVFDISSNQLS------GNLPSVIANLT 52
L L L + D L GL I +L+ ++ + LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNC 112
++ L + S + L++ N +F + LK L +
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFG------WQHLELVNC-KFGQFPTLKLKSLKRLTFTSN 335
Query: 113 SLKVIPSFLLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGI----LQ 167
S + +L+FLDLS N L + T+L+ L LS N + L
Sbjct: 336 KGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL 227
L + L HLD ++NL ++ L+ L+ +DIS + + L +
Sbjct: 395 LEQ-----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
L ++ N F + +L +LD+S+ + +L+ L+ L + +N+F
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGN-FSYLDVLLMSKNHLEGNIPVQ--INNFR 344
+ L VLD S N + + + S L L +++N Q + +
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569
Query: 345 QLEILYLSENRLFGSIASFLNLSSIMHLYL 374
L + R+ + S ++ L +
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMPVLSLNI 599
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 66/349 (18%), Positives = 109/349 (31%), Gaps = 26/349 (7%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
LDLS N L + S L+ LD+S Y +L+ L L L N
Sbjct: 33 LDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG-NIPVQINNFRQL 346
L L L+ IG+ L L ++ N ++ +P +N L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 347 EILYLSENRLFGSIA-SFLNLSSI----MHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
E L LS N++ L + + L L N ++ I + L L LR+N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNN 210
Query: 402 KFFGRIPHQ-INKHSELRVLLLRGNYLQGEIPI------ALCQLQKLRILDLSHNKLNGS 454
+ I + L V L + E + AL L L I + L+
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 455 ---IPSCFANVLFWREGN-GDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLH 510
I F + + + + + G + + + L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-----FGQFPTLKLK 325
Query: 511 QRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELT--GEIPSEIGELPK 557
++ F + ++ L + +DLS N L+ G
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-26
Identities = 54/275 (19%), Positives = 89/275 (32%), Gaps = 30/275 (10%)
Query: 1 MKLKNLTELDLRENNL--EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
+ L +L LDL N L +G T LK D+S N + + S L LE+L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
+N + S+ + NL L + S+ +V
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDI---SHT------------HTRVA---------FN 438
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L+ L ++ N NF + NL L LS + L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM-KELFLLDLSRNKFSG 237
L++S+NN L L ++D S N+ + + L L+L++N F+
Sbjct: 499 LNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Query: 238 DLSATS-VNGCASLEYLDVSENNFYGHIFPTYMNL 271
S + L V +
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 9/212 (4%)
Query: 1 MKLKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
+ L+ L LD + +NL+ + L L DIS + L+SLE L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSL-KVI 117
+ N+FQ F + T NL L L L + + L+VL + + + +
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH--DF 175
+L+ LD S N ++ + L ++L L L+ N F+ +
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207
R L + + P + ++ ++I+
Sbjct: 571 QRQLLVEVERMECATPSDKQ--GMPVLSLNIT 600
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 4e-57
Identities = 69/469 (14%), Positives = 140/469 (29%), Gaps = 42/469 (8%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83
L+ + + SG +P I LT LE L L + + L S
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 84 LLKVS-NNLRFKTENWIPTFQLKVLQL----PNCSLKVIPSFLLHQYNLKFLDLSSNKLV 138
+ + + ++ P L + K I + SN +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 139 GNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL 198
+ T L + N+ F + + T L
Sbjct: 197 FVSKA--VMRLTKLRQFYMGNSPFVAENICE-----AWENENSEYAQQYKTEDLKWDN-L 248
Query: 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA-------TSVNGCASLE 251
+ L +++ +P + + E+ L++++ N+ ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 252 YLDVSENNF-YGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 310
+ + NN + + + +L L N GK+ A + L L+++ N ++
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367
Query: 311 HIPCWIGNFSYLDVLLMSKNHLEGNIP--VQINNFRQLEILYLSENRL-------FGSI- 360
+ G ++ L + N L+ IP + + + S N + F +
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF-------FGRIPHQINK 413
+ ++ + L N +S + L +++L N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 414 HSELRVLLLRGNYLQGEIP-IALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L + LR N L L L +DLS+N + P+ N
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 4e-57
Identities = 76/497 (15%), Positives = 151/497 (30%), Gaps = 48/497 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGN----LPSVIANLTSLEYL 57
+T L L G++P + LT L+V + S+ N P I+ S E
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 58 VLSDNNFQGEFPLSL-LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKV 116
++Q F + S+L + K + I + + + ++
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
+ ++ L+ + ++ V N N E + L L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEA-WENENSEYAQQYKTEDLKWDNLKD-----L 251
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF--------EGNIPYSIGEMKELFLL 228
+++ N + LP + L ++ LI+++ N + +++ ++
Sbjct: 252 TDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI 288
+ N TS+ L L+ N G + P + + +L L L N T
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIP 369
Query: 289 KAGLLNSHGLVVLDISNNLLSGHIPCW-IGNFSYLDVLLMSKNHLEG-------NIPVQI 340
+ + L ++N L + + S + + S N + +
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 341 NNFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSG-------QIPSTLLRSTE 392
+ + LS N++ F S + + L N L+ +
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 393 LLTLDLRDNKFFGRIPHQI--NKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL------ 444
L ++DLR NK ++ L + L N P L+
Sbjct: 490 LTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547
Query: 445 DLSHNKLNGSIPSCFAN 461
D N+ P
Sbjct: 548 DAQGNRTLREWPEGITL 564
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-54
Identities = 71/494 (14%), Positives = 156/494 (31%), Gaps = 71/494 (14%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L + + + + + SN ++ + + LT L + +
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
+ F E + N E + K
Sbjct: 216 SPFVAENICEAW-ENENSEYAQQYKT-----------------------------EDLKW 245
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF------ 175
+ +L +++ + + PT+L + ++++ ++ N QL
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 176 --LRHLDISNNNLI-GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
++ + I NNL + ++ ++KL +++ N EG +P + G +L L+L+
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362
Query: 233 NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM-NLTQLRGLYLKNNHFTG----- 286
N+ + + A +E L + N +++ + + N
Sbjct: 363 NQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 287 --KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG-------NIP 337
+ + +++SNN +S S L + + N L +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 338 VQINNFRQLEILYLSENRLFGSIASF--LNLSSIMHLYLQKNALSGQIPSTLLRSTELLT 395
N L + L N+L F L ++ + L N+ S P+ L S+ L
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540
Query: 396 LDLRD------NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
+R+ N+ P I L L + N ++ + + + +LD+ N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597
Query: 450 KLNGSIPSCFANVL 463
S +
Sbjct: 598 PNISIDLSYVCPYI 611
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 6e-47
Identities = 67/450 (14%), Positives = 128/450 (28%), Gaps = 80/450 (17%)
Query: 2 KLKNLTELDLRENNLEGQ-------------------LPWRLSDLTGLKVFDISSNQLSG 42
+L L + + + + + +L L ++ +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263
Query: 43 NLPSVIANLTSLEYLVLSDNNFQGEFPL----SLLTNHSNLEVLRLLKVSNNLRFKTENW 98
LP+ + L ++ + ++ N L L + E ++++ + N
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-------- 315
Query: 99 IPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158
LK + + L L L+ N+L G P + L L L+
Sbjct: 316 ----NLKTFP--------VETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLA 361
Query: 159 NNSFSGIL-----QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
N + I + + +L ++N L + + ID S N
Sbjct: 362 YNQITEIPANFCGFTEQ-----VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 214 -------NIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF------ 260
+ + + + ++LS N+ S + + L +++ N
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 261 -YGHIFPTYMNLTQLRGLYLKNNHFTGKIKA-GLLNSHGLVVLDISNNLLSGHIPCWIGN 318
+ N L + L+ N T LV +D+S N S P N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534
Query: 319 FSYLDVL------LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHL 372
S L N P I L L + N + +I L
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVL 592
Query: 373 YLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
++ N S + E L +K
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-40
Identities = 65/475 (13%), Positives = 150/475 (31%), Gaps = 72/475 (15%)
Query: 103 QLKVLQLPNCSLK-VIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---MQNNTNLEVLRLS 158
++ L L +P + L+ L L S+ N + + N + E +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 159 NNSFSG--ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
+ + P+ L I+++ ++ ++ L K I NN +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF-VS 199
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
++ + +L + + F N C + E + Y + NL L
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVA------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL--------SGHIPCWIGNFSYLDVLLMS 328
+ + N K+ L + +++++ N + ++ +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 329 KNHL-EGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387
N+L + + ++L +L N+L G + +F + + L L N ++ +
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFC 373
Query: 388 LRSTELLTLDLRDNKFFGRIPH--QINKHSELRVLLLRGNYLQG-------EIPIALCQL 438
+ ++ L NK IP+ S + + N + + +
Sbjct: 374 GFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 439 QKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLD 498
+ ++LS+N+++ F + S+++
Sbjct: 433 INVSSINLSNNQISKFPKEL------------------------FSTGSPL-----SSIN 463
Query: 499 LWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIG 553
L L + + +N F N L + DL +N+LT + +
Sbjct: 464 L-----MGNMLTEIPKNSLKDENE-NFKNTYLLTSI---DLRFNKLTK-LSDDFR 508
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-34
Identities = 43/405 (10%), Positives = 116/405 (28%), Gaps = 52/405 (12%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGN----IPYSIGEMKELFLLDLS 231
+ L + G +P +G L +L ++ + + + N P I
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 232 RNKFSGD-LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKA 290
R + + + L ++ + I + + + +N+ T +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200
Query: 291 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILY 350
++ L + N+ C + ++ +N + L +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVE 255
Query: 351 LSENRLFGSI-ASFLNLSSIMHLYLQKNAL--------SGQIPSTLLRSTELLTLDLRDN 401
+ + L + + + N Q + ++ + + N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 402 KFF-GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460
+ + K +L +L N L+G++P A KL L+L++N++ +
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 461 N-----VLFWREGNGDLYG---SGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQR 512
L + F + + + S ++ ++ +
Sbjct: 375 FTEQVENL-------SFAHNKLKYIPNIFDAKSVSVMSA-------IDFSYNEIGSVDGK 420
Query: 513 AQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
+ G +++ + +LS N+++
Sbjct: 421 NFDPLDP----TPFKGINVSSI---NLSNNQISKFPKELFSTGSP 458
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 32/327 (9%), Positives = 94/327 (28%), Gaps = 48/327 (14%)
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG----KIKAGL 292
G S+N + L + G + LT+L L L ++ G+
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV--LLMSKNHLEGNIPVQINNFRQLEILY 350
+ + + D+ ++ + + +I + +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189
Query: 351 LSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ 410
N + + + L+ + Y+ + + + + + +
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW-----ENENSEYAQQYKTEDLK 244
Query: 411 INKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNG 470
+ +L + + ++P L L ++++++++ N+
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI------------------ 286
Query: 471 DLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSS 530
SG + + L + +++ ++ T +
Sbjct: 287 ----SGEQLKDDWQALADAPVGEKIQI-IYIGYNNLKTFPVETSL-------------QK 328
Query: 531 LNYMSGMDLSYNELTGEIPSEIGELPK 557
+ + ++ YN+L G++P G K
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIK 354
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 9e-56
Identities = 81/463 (17%), Positives = 143/463 (30%), Gaps = 15/463 (3%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
K L L + + L + L+ + SN +S L+ L +N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP---S 119
+++ L L N++ + + L ++
Sbjct: 164 AIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQN-NTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L P ++E + L + F I L+
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
LD++ + + LP + L L + +S N FE S L L + N +
Sbjct: 283 LDLTATH-LSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Query: 239 LSATSVNGCASLEYLDVSENNFY--GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
L + +L LD+S ++ NL+ L+ L L N
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 297 GLVVLDISNNLLSGHIPC-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
L +LD++ L N L VL +S + L+ + + L+ L L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 356 LFGSI----ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411
S L + L L LS + +DL N+ +
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEA 519
Query: 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454
H + L L N++ +P L L + R ++L N L+ +
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 6e-53
Identities = 87/473 (18%), Positives = 163/473 (34%), Gaps = 20/473 (4%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ L+ N L S L L D++ Q+ + L+ LVL+ N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSFL 121
+ L+ L+ L + + + L+ L L + + I
Sbjct: 92 PLIF-MAETALSGPKALKHLFF--IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Query: 122 LHQ-YNLKFLDLSSNKLVGNFPTWLMQ-NNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
LK LD +N + + L L+ N +GI + + L
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAFDSAVFQSL 207
Query: 180 DISNNNLIGTLPQNM-GTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL--LDLSRNKFS 236
+ + + + + + +Q L L + E P + E+ + ++L ++ F
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
+S+ + + + L+ LD++ + + + L+ L+ L L N F + N
Sbjct: 268 N-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 297 GLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFRQLEILYLSE 353
L L I N + N L L +S + +E +Q+ N L+ L LS
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 354 NRLFGSIA-SFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI 411
N +F + L L L + + ++ L L+L +
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 412 NKHSELRVLLLRGNYLQGEIPI---ALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ L+ L L+GN+ +L L +L IL LS L+ F +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-52
Identities = 105/473 (22%), Positives = 167/473 (35%), Gaps = 20/473 (4%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT LDL + L +++N L + ++ +L++L
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI-PTFQLKVLQLPNCSLKVIPSFL 121
L N LE L L SN++ PT +LKVL N ++ +
Sbjct: 116 GISS-IDFIPLHNQKTLESLYLG--SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 122 ---LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
L Q L+L+ N + G P + N L L
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232
Query: 179 LDISNNNLIGTLPQNMGTVLQKLML--IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
+ + + + L ++ + I++ K+ F + L LDL+ S
Sbjct: 233 GTFEDMD-DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL-NS 295
S G ++L+ L +S N F + N L L +K N ++ G L N
Sbjct: 292 ELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 296 HGLVVLDISNNLL--SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353
L LD+S++ + S + N S+L L +S N QLE+L L+
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 354 NRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411
RL A F NL + L L + L L L+L+ N F +
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 412 N---KHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
N L +L+L L A L+ + +DLSHN+L S ++
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-35
Identities = 64/368 (17%), Positives = 121/368 (32%), Gaps = 12/368 (3%)
Query: 104 LKVLQLPNCSLKVIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
+ L+ L I + + NL FLDL+ ++ Q+ L+ L L+ N
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPL 93
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ + L+HL I ++ + L + + N+
Sbjct: 94 IFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS-ENNFYGHIFPTYMNLTQLRGLYLKN 281
++L +LD N LS ++ L ++ N I P + + L
Sbjct: 153 EKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 282 NHFTGKIKAGLLNSH--GLVVLDISNNLLSGHIPCWIGNFS--YLDVLLMSKNHLEGNIP 337
I GL NS L + + P ++ + + K++
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 338 VQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397
+ F L+ L L+ L + + LS++ L L N + L L
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 398 LRDNKFFGRIPHQINKH-SELRVLLLRGNYLQ--GEIPIALCQLQKLRILDLSHNKLNGS 454
++ N + ++ LR L L + ++ + L L L+ L+LS+N+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 455 IPSCFANV 462
F
Sbjct: 392 KTEAFKEC 399
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-34
Identities = 67/338 (19%), Positives = 134/338 (39%), Gaps = 29/338 (8%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ ++ ++L+++ +GL+ D+++ LS LPS + L++L+ LVLS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N F+ +S SN L L + N L++
Sbjct: 310 ANKFENLCQISA----SNFPSLTHLSIKGN--------------------TKRLELGTGC 345
Query: 121 LLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L + NL+ LDLS + + + ++N ++L+ L LS N + + L L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-- 237
D++ L Q+ L L ++++S + + + + L L+L N F
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297
S+ LE L +S + + +L + + L +N T L+
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLK 524
Query: 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
+ L++++N +S +P + S + + +N L+
Sbjct: 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-31
Identities = 69/437 (15%), Positives = 132/437 (30%), Gaps = 57/437 (13%)
Query: 128 KFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187
K + + L P L + E L S N I + L LD++ I
Sbjct: 15 KTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-I 69
Query: 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGC 247
+ ++ +L + ++ N ++ K L L + S + ++
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQ 128
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL--VVLDISN 305
+LE L + N+ P +L+ L +NN K + + + L+++
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-----VQINNFRQLEILYLSENRLFGSI 360
N ++ I + + L I I + + + + ++
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
L S+ + LQK+ +T + L LDL +P + S L+ L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKL 306
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIY 480
+L N + I+ L L + N + +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC--------------------- 345
Query: 481 FQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLS 540
L ++ LDL ++ + N S L + +LS
Sbjct: 346 --LENLENL-----RELDL-----------SHDDIETSDCCNLQLRNLSHLQSL---NLS 384
Query: 541 YNELTGEIPSEIGELPK 557
YNE E P+
Sbjct: 385 YNEPLSLKTEAFKECPQ 401
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 2e-55
Identities = 89/476 (18%), Positives = 150/476 (31%), Gaps = 28/476 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L+ L L N ++ P S LT L+ +L+ I L +L+ L ++ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP-----TFQLKVLQLPNCSLKVI 117
+ +N +NL + L N ++ T N + L + + I
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDL--SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
L L L N N +QN L V RL F L + +
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256
Query: 178 HLDIS-------NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230
L + L + + ++ + + + + L +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSI 314
Query: 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKA 290
R + L L+ L ++ N G I + L L L L N +
Sbjct: 315 IRCQ----LKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCC 368
Query: 291 --GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLE 347
L ++ L LD+S N + L L + L+ + +L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 348 ILYLSENRLFGSIA-SFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFG 405
L +S FL L+S+ L + N+ S + + T L LDL +
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ L++L + N L QL L LD S N++ S
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 4e-51
Identities = 91/479 (18%), Positives = 150/479 (31%), Gaps = 38/479 (7%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ +DL N L+ + S+ + L+ D+S ++ L L L+L+ N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVI--PSFL 121
Q F + ++LE L V L I LK L + + + P++
Sbjct: 93 QS-FSPGSFSGLTSLENLVA--VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 122 LHQYNLKFLDLSSNKLVG---NFPTWLMQNNTNLEVLRLSNNSFSGI----LQLPKVKHD 174
+ NL +DLS N + N +L +N L +S N I Q K
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK---- 205
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELF-------- 226
L L + N + + L L + + F+ I E +
Sbjct: 206 -LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264
Query: 227 LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG 286
L+ + A++ + ++ + + + L +
Sbjct: 265 EFRLTYTNDFS-DDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ 321
Query: 287 KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFR 344
L L L ++ N S I L L +S+N L G
Sbjct: 322 FPTLDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKF 403
L L LS N A+F+ L + HL Q + L + S +LL LD+
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 404 FGRIPHQINKHSELRVLLLRGNYLQGEIP-IALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ L L + GN + L LDLS +L F
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-39
Identities = 83/450 (18%), Positives = 154/450 (34%), Gaps = 36/450 (8%)
Query: 31 KVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNN 90
+ +LS +P I +S + + LS N + +N S L+ L L
Sbjct: 14 ITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDL--SRCE 67
Query: 91 LRFKTENWIPTFQ-LKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQN 148
+ + L L L ++ +L+ L KL ++ +
Sbjct: 68 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQ 126
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKHDF--LRHLDISNNNLIGTLPQNMGTVLQKL----M 202
L+ L +++N +LP + L H+D+S N I T+ N L++ +
Sbjct: 127 LITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNL 184
Query: 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG 262
+D+S N + I + +L L L N S ++ T + A L + F
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 263 HIFPTYMNLTQLRGL--------YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 314
+ + GL L + + + ++ + ++
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED 302
Query: 315 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374
+F L + + L+ + L+ L L+ N+ + L S+ +L L
Sbjct: 303 VPKHFK-WQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDL 357
Query: 375 QKNALSGQIPSTL--LRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432
+NALS + L + L LDL N + EL+ L + + L+
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416
Query: 433 I-ALCQLQKLRILDLSHNKLNGSIPSCFAN 461
A L+KL LD+S+ F
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-34
Identities = 70/364 (19%), Positives = 126/364 (34%), Gaps = 41/364 (11%)
Query: 2 KLKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNL------PSVIANLTSL 54
+ L EL LR N + L +L GL V + + PS++ L +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 55 EYLVLSDN-NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCS 113
+ +N+ + L + E+ F+ + L + C
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSL---AGVSIKYLEDVPKHFKWQSLSIIRCQ 318
Query: 114 LKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-------L 166
LK P+ L LK L L+ NK +F +L L LS N+ S L
Sbjct: 319 LKQFPTLDLP--FLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 167 QLPKVKH------------------DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISK 208
++H + L+HLD ++ L + L+KL+ +DIS
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 209 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268
N + + + L L ++ N F + + +L +LD+S+ + +
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
L +L+ L + +N+ + + L LD S N + L ++
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553
Query: 329 KNHL 332
N +
Sbjct: 554 NNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-18
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 1 MKLKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
M L+ L LD + + L+ + L L DIS + + LTSL L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIP 118
+ N+F+ ++ N +NL L L L + T +L++L + + +L +
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDL--SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 119 -SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
S Y+L LD S N++ L +L L+NNS + I + FL+
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ----KFLQ 568
Query: 178 HLDISNNNLIG 188
+ L+
Sbjct: 569 WVKEQKQFLVN 579
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 5e-18
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLP-SVIANLTSLEYLVL 59
+ +L LDL N + L L+ D + L S +L L YL +
Sbjct: 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLK 115
S N + +F + ++L L++ + N FK F L L L C L+
Sbjct: 432 SYTNTKIDFD-GIFLGLTSLNTLKM---AGN-SFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 116 VIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
I + + L+ L++S N L+ + +L L S N + +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 175 FLRHLDISNNNL 186
L +++NN++
Sbjct: 546 SLAFFNLTNNSV 557
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 2e-54
Identities = 67/495 (13%), Positives = 146/495 (29%), Gaps = 48/495 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+T L L +G++P + LT LKV ++ + + + + +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVS----NNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
+ + L L + LL+ + ++ ++ + + + + I
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+ L+ + +++ + + N + + N L L
Sbjct: 442 KAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWSNLKD-----LTD 495
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG---------NIPYSIGEMKELFLLD 229
+++ N + LP + L +L ++I+ N + ++ +
Sbjct: 496 VELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Query: 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289
+ N ++ S+ L LD N + +L L L N +
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPE 612
Query: 290 AGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNIP-----VQINN 342
+ + L S+N L IP + + + S N + +
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Query: 343 FRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALS-------GQIPSTLLRSTELL 394
+ LS N + F S I + L N ++ + L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 395 TLDLRDNKFFGRIPHQI--NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH---- 448
T+DLR NK + L + + N P +L+ + H
Sbjct: 732 TIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789
Query: 449 --NKLNGSIPSCFAN 461
N++ P+
Sbjct: 790 EGNRILRQWPTGITT 804
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 185 bits (470), Expect = 2e-50
Identities = 63/466 (13%), Positives = 139/466 (29%), Gaps = 62/466 (13%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L L + + + + + + N +NL L + L +
Sbjct: 446 RLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
+ P L +L L+ L ++ N + +
Sbjct: 501 CPNMTQLPDFL----YDLPELQSLNIACN------------RGISAAQLKADWTRLADDE 544
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
++ + N L + +Q L +L +N + L L +
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK--LTDLKL 602
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP--YSIGEMKELFLLDLSRNKFSGD- 238
N + +P++ ++ + S N + IP ++ + + +D S NK +
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEG 660
Query: 239 ---LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-------GKI 288
+ + + +S N + + + + L NN T
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720
Query: 289 KAGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346
N++ L +D+ N L+ + YL + +S N P Q N QL
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778
Query: 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406
+ + + N + Q P+ + L+ L + N +
Sbjct: 779 KAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820
Query: 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+ ++ L +L + N ++C + + L ++K
Sbjct: 821 VDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 5e-42
Identities = 73/423 (17%), Positives = 132/423 (31%), Gaps = 63/423 (14%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSG---------NLPSVIANLT 52
LK+LT+++L QLP L DL L+ +I+ N+ L
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQ 108
++ + NN + + L L +L V N +R + F +L L+
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDC--VHNKVRH-----LEAFGTNVKLTDLK 601
Query: 109 LPNCSLKVIPSFLL-HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-- 165
L ++ IP ++ L S NKL + ++ + + S N
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Query: 166 ---LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE-------GNI 215
+ K + +S N + P + + I +S N
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPK 720
Query: 216 PYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLR 275
+ L +DL NK + L +DVS N F +N +QL+
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLK 779
Query: 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
+++ D N + P I L L + N +
Sbjct: 780 AFGIRHQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-K 820
Query: 336 IPVQINNFRQLEILYLSENRLF-GSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELL 394
+ ++ QL IL +++N + S L + +R + L
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ------DIRGCDAL 872
Query: 395 TLD 397
++
Sbjct: 873 GIE 875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 4e-35
Identities = 55/378 (14%), Positives = 120/378 (31%), Gaps = 38/378 (10%)
Query: 103 QLKVLQLPNCSLK-VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161
++ L L K +P + LK L ++ + + + T +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 162 FSGILQLPKVKHDFLRHLDISNN-----NLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
++ L D+ + + + ++ L+ + ++ N I
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFIS 441
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
+I + +L ++ + + F T N E + Y + ++ NL L
Sbjct: 442 KAIQRLTKLQIIYFANSPF------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336
+ L N ++ L + L L+I+ N +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---------------AAQLKADWTRL 540
Query: 337 PVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELL 394
+ +++I Y+ N L F + AS + + L N + + +L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLT 598
Query: 395 TLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEIP--IALCQLQKLRILDLSHNKL 451
L L N+ IP ++ L N L+ IP + + +D S+NK+
Sbjct: 599 DLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 452 NGSIPSCFANVLFWREGN 469
+ ++ ++ N
Sbjct: 657 GSEGRNISCSMDDYKGIN 674
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 5e-29
Identities = 70/454 (15%), Positives = 128/454 (28%), Gaps = 81/454 (17%)
Query: 116 VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF 175
L + + L L+ G P + T L+VL +S + +L +
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
+ + + + Q+L L D+ ++ N + +K+ + L +
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQI 430
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
N I LT+L+ +Y N+ FT A
Sbjct: 431 GNL-------------------TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
+ + N L + + +P + + +L+ L ++ NR
Sbjct: 472 -----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526
Query: 356 LFGSI----------ASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFF 404
+ I Y+ N L S L+ +L LD NK
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV- 585
Query: 405 GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQ-LQKLRILDLSHNKLNGSIPSCFANVL 463
R + +L L L N ++ EIP C ++ L SHNKL
Sbjct: 586 -RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL------------ 631
Query: 464 FWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRY 523
+ F + + ++D ++ +N
Sbjct: 632 -----------KYIPNIFNAKSVYVM-----GSVDF-----------SYNKIGSEGRNIS 664
Query: 524 EFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
+ S + LSYNE+
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-23
Identities = 27/227 (11%), Positives = 77/227 (33%), Gaps = 11/227 (4%)
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
GD ++ + L ++ G + LT+L+ L + T +
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
Query: 297 GLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGN---IPVQINNFRQLEILYL- 351
+ + + + H ++ L++ + ++ + N P++ ++ L+ +
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 352 -SENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ 410
NR+ + L+ + +Y + + + + K +
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW-----EDANSDYAKQYENEELS 486
Query: 411 INKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
+ +L + L ++P L L +L+ L+++ N+ +
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 43/224 (19%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLS-------GNLPSVIANLTS 53
K N + + L N ++ + + + +S+N ++ N
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 54 LEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCS 113
L + L N + L L + VS N
Sbjct: 730 LTTIDLRFNKLT-SLSDDF--RATTLPYLSNMDVSYNC---------------------- 764
Query: 114 LKVIPSFLLHQYNLKFLDL------SSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ 167
P+ L+ LK + N+++ +PT + +L L++ +N +
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDIRKV-- 821
Query: 168 LPKVKHDFLRHLDISNNNLI-GTLPQNMGTVLQKLMLIDISKNN 210
+ L LDI++N I + + + ++ K
Sbjct: 822 -DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 21/176 (11%), Positives = 52/176 (29%), Gaps = 8/176 (4%)
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
+ ++ + N + L ++ +G +P I +L++L + S
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 361 A-SFLNLSSIMHLYLQKNALSGQIPS------TLLRSTELLTLDLRDNKFFGRIPHQINK 413
+ +K+ + L ++LL + N I
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 414 HSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGN 469
+ + N + I A+ +L KL+I+ +++ +
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 18/163 (11%), Positives = 47/163 (28%), Gaps = 8/163 (4%)
Query: 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460
+ + + ++ + + L L G +G +P A+ QL +L++L + S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 461 NVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTK 520
L + + F + D + + + +++
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 521 NRYEFYNG--------SSLNYMSGMDLSYNELTGEIPSEIGEL 555
N L + + + + T + + E
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-53
Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 4/257 (1%)
Query: 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS-ATSVNGCASLEYLDVS-ENNFY 261
D + G + + + + LDLS +S+ L +L + NN
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321
G I P LTQL LY+ + + +G I L LV LD S N LSG +P I +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 322 LDVLLMSKNHLEGNIPVQINNFRQL-EILYLSENRLFGSIASFLNLSSIMHLYLQKNALS 380
L + N + G IP +F +L + +S NRL G I ++ + L +N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 381 GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQK 440
G + L N + ++ L L LR N + G +P L QL+
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 441 LRILDLSHNKLNGSIPS 457
L L++S N L G IP
Sbjct: 270 LHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-53
Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 8/284 (2%)
Query: 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGT--LPQNMGTVLQKLMLIDISK-NNFEG 213
N ++ G+L + + +LD+S NL +P ++ L L + I NN G
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVG 91
Query: 214 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
IP +I ++ +L L ++ SG + ++ +L LD S N G + P+ +L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 274 LRGLYLKNNHFTGKIKAGLLNSHGLV-VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
L G+ N +G I + L + IS N L+G IP N + L + +S+N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 333 EGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTE 392
EG+ V + + + ++L++N L + ++ L L+ N + G +P L +
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 393 LLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALC 436
L +L++ N G IP Q V N P+ C
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 5e-47
Identities = 75/332 (22%), Positives = 115/332 (34%), Gaps = 67/332 (20%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSG--NLPSVIANLTSLEYLVLSD-NN 63
D G L + + D+S L +PS +ANL L +L + NN
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
G P ++ + L
Sbjct: 89 LVGPIPPAI----AKLT------------------------------------------- 101
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG-----ILQLPKVKHDFLRH 178
L +L ++ + G P +L L L S N+ SG I LP L
Sbjct: 102 --QLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPN-----LVG 153
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
+ N + G +P + G+ + + IS+N G IP + + L +DLSRN GD
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
S + + + +++N+ + L GL L+NN G + GL L
Sbjct: 213 ASV-LFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 330
L++S N L G IP GN DV + N
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-42
Identities = 66/311 (21%), Positives = 104/311 (33%), Gaps = 80/311 (25%)
Query: 2 KLKNLTELDLR-ENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L L + NNL G +P ++ LT L I+ +SG +P ++ + +L L S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N G P S+ S+L
Sbjct: 134 YNALSGTLPPSI----SSLP---------------------------------------- 149
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
NL + N++ G P + + L +
Sbjct: 150 -----NLVGITFDGNRISGAIPDSYG-SFSKL-----------------------FTSMT 180
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
IS N L G +P + L +D+S+N EG+ G K + L++N + DL
Sbjct: 181 ISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI-KAGLLNSHGLV 299
V +L LD+ N YG + L L L + N+ G+I + G L +
Sbjct: 239 --KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 300 VLDISNNLLSG 310
+N L G
Sbjct: 297 AY-ANNKCLCG 306
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 3e-39
Identities = 63/287 (21%), Positives = 104/287 (36%), Gaps = 62/287 (21%)
Query: 281 NNHFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSK-NHLEGNIP 337
N + G + ++ + LD+S L IP + N YL+ L + N+L G IP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 338 VQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
I QL LY++ + G+I FL + +++ L NALSG +P ++ L+ +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 397 DLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSI 455
N+ G IP + + + N L G+IP L L +DLS N L G
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213
Query: 456 PSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQV 515
FG ++ + L++
Sbjct: 214 SV------------------------LFGSDKNTQK-------IHLAK------------ 230
Query: 516 QFVTKNRY-----EFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
N + +LN + DL N + G +P + +L
Sbjct: 231 -----NSLAFDLGKVGLSKNLNGL---DLRNNRIYGTLPQGLTQLKF 269
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 61/240 (25%)
Query: 328 SKNHLEGNIPVQINNFRQLEILYLSENRLFGSI---ASFLNLSSIMHLYLQK-NALSGQI 383
G + ++ L LS L +S NL + LY+ N L G I
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93
Query: 384 PSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRI 443
P + + T+L L + G IP +++ L L N L G +P ++ L L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 444 LDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSR 503
+ N+++G+IP +G + T + +SR
Sbjct: 154 ITFDGNRISGAIPD------------------------SYGSFSKLFTS------MTISR 183
Query: 504 DDYATLHQRAQVQFVTKNRYEFYNGS------SLNYMSGMDLSYNELTGEIPSEIGELPK 557
NR G +LN ++ +DLS N L G+ G
Sbjct: 184 -----------------NRL---TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-42
Identities = 94/475 (19%), Positives = 157/475 (33%), Gaps = 31/475 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L +L+ L L N ++ S L+ L+ L+ I +L +L+ L ++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP-----TFQLKVLQLPNCSLKV 116
N Q +N +NLE L L SN ++ + L L +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
I + L L L +N N +Q LEV RL F L K L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 177 R--------HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI-GEMKELFL 227
++ + ++ L + + E +S + L L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-- 285
++ +F SL+ L + N G + ++L L L L N +
Sbjct: 312 VNCKFGQFPT-------LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFR 344
G + L LD+S N + + L+ L ++L+ + + R
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 345 QLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNK 402
L L +S + F LSS+ L + N+ + L LDL +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
P N S L+VL + N L+ +L L+ + L N + S P
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-36
Identities = 98/496 (19%), Positives = 157/496 (31%), Gaps = 54/496 (10%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQG 66
E N ++P L K D+S N L + L+ L LS Q
Sbjct: 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65
Query: 67 EFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI-PTFQLKVLQLPNCSLKVIPSFLLHQ- 124
+ S+L L L N ++ L+ L +L + +F +
Sbjct: 66 TIEDGAYQSLSHLSTLIL--TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI----------LQLPKVKHD 174
LK L+++ N + N TNLE L LS+N I + L + D
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 175 F-----------------LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGN--- 214
L L + NN + + L L + + F
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 215 IPYSIGEMKEL-----FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
+ ++ L L+ + D N ++ + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFS 301
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
+ L L N F L + L L ++N + L+ L +S+
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSR 356
Query: 330 NHLE--GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387
N L G L+ L LS N + ++FL L + HL Q + L ++
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 388 LRS-TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQKLRILD 445
S L+ LD+ N S L VL + GN Q P +L+ L LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 446 LSHNKLNGSIPSCFAN 461
LS +L P+ F +
Sbjct: 477 LSQCQLEQLSPTAFNS 492
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 5e-19
Identities = 46/218 (21%), Positives = 77/218 (35%), Gaps = 28/218 (12%)
Query: 1 MKLKNLTELDLRENNLE--GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
+ L +L LDL N L G T LK D+S N + + S L LE+L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
+N + S+ + NL L + S+ +V
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDI---SHT------------HTRVAF---------N 438
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L+ L ++ N NF + NL L LS + L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
L++++N L ++P + L L I + N ++ + P
Sbjct: 499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-39
Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 54/485 (11%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSD 61
L L L N + L L++ ++ S + NL +L L L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
+ +L LRL L + +
Sbjct: 83 SKIY-FLHPDAFQGLFHLFELRL--YFCGLS--------------------DAVLKDGYF 119
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ--LPKVKHDFLRHL 179
+ L LDLS N++ + +L+ + S+N + + L ++ L
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 180 DISNNNLIGTLPQNMGTVLQK-----LMLIDISKNNFEGNIP------------YSIGEM 222
++ N+L + + G + L ++D+S N + +I +S+
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 223 KELFLLDLSRNKFSG-DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
+ + D + + +S+ +LD+S + + L L+ L L
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
N L VL++S NLL + + + KNH+
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
+L+ L L +N + + + SI ++L N L +P L + + L +N
Sbjct: 360 FLEKLQTLDLRDNA----LTTIHFIPSIPDIFLSGNKLV-TLPKINLTAN---LIHLSEN 411
Query: 402 KFFG-RIPHQINKHSELRVLLLRGNYLQGEIPIALCQ-LQKLRILDLSHNKLNGSIPSCF 459
+ I + + + L++L+L N L L L N L + +
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 460 ANVLF 464
+F
Sbjct: 472 CWDVF 476
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-39
Identities = 99/497 (19%), Positives = 172/497 (34%), Gaps = 51/497 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L+ L L+L + +L L++ D+ S+++ P L L L L
Sbjct: 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106
Query: 62 NNFQGEF-PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLKV 116
N L L L S N + ++ P+F LK + + + +
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDL---SKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Query: 117 IPSFL---LHQYNLKFLDLSSNKLVGNFPTWLMQ-----NNTNLEVLRLSNNSFSGILQ- 167
+ L L F L++N L + N LE+L +S N ++ +
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222
Query: 168 -----------LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML--IDISKNNFEGN 214
+ + +N I QN L + + +D+S
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281
Query: 215 IPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQL 274
+K+L +L+L+ NK + ++ + G +L+ L++S N + L ++
Sbjct: 282 NSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 275 RGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG 334
+ L+ NH L LD+ +N L+ I + + +S N L
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV- 394
Query: 335 NIPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-T 391
+P +++LSENRL + L + + L L +N S
Sbjct: 395 TLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451
Query: 392 ELLTLDLRDNKFFGRIPHQINKH-----SELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446
L L L +N ++ S L+VL L NYL P L LR L L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 447 SHNKLNGSIPSCFANVL 463
+ N+L + L
Sbjct: 512 NSNRLTVLSHNDLPANL 528
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 7e-34
Identities = 77/447 (17%), Positives = 144/447 (32%), Gaps = 50/447 (11%)
Query: 3 LKNLTELDLRENNLEGQL--PWRLSDLTGLKVFDISSNQLSG-NLPSVIANLTSLEYLVL 59
L +L EL L L + +L L D+S NQ+ L L SL+ +
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 60 SDNNFQGEFPLSLLT-NHSNLEVLRL-----LKVSNNLRFKTENWIPTFQLKVLQLPNCS 113
S N L L L + K N L++L +
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 114 LKVIPSFLLHQ-------------YNLKFLDLSSNKLVGNFPTWLM-QNNTNLEVLRLSN 159
V + +++ + + +++ L LS+
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
+ L+ L+++ N I + L L ++++S N +
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334
Query: 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF--------YGHIFPTYMNL 271
+ ++ +DL +N + + + L+ LD+ +N IF + L
Sbjct: 335 YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393
Query: 272 T-------QLRGLYLKNNHFTG-KIKAGLLNSHGLVVLDISNNLLSG-HIPCWIGNFSYL 322
++L N I LL L +L ++ N S L
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453
Query: 323 DVLLMSKNHLEGNIPVQIN-----NFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQK 376
+ L + +N L+ ++ L++LYL+ N L F +L+++ L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 377 NALSGQIPSTLLRSTELLTLDLRDNKF 403
N L+ + L + L LD+ N+
Sbjct: 514 NRLTVLSHNDLPAN--LEILDISRNQL 538
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 5e-32
Identities = 93/449 (20%), Positives = 159/449 (35%), Gaps = 41/449 (9%)
Query: 43 NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF 102
NL V L + E L+LS N + S L++L L L E +
Sbjct: 15 NLTQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73
Query: 103 QLKVLQLPNCSLKVIPSFLL-HQYNLKFLDLSSNKL-VGNFPTWLMQNNTNLEVLRLSNN 160
L++L L + + + ++L L L L +N L L LS N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 161 SFSGILQLPKVKH-DFLRHLDISNNNLIGTLPQNMGTVLQ--KLMLIDISKNNFEGNIPY 217
+ P + L+ +D S+N I + ++ LQ L ++ N+ +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192
Query: 218 SIGEMKELF------LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNL 271
G+ F +LD+S N ++ D++ N + + + + + N+
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
N F G L + LD+S+ + L VL ++ N
Sbjct: 253 KDPD-----QNTFAG------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 332 LEGNIPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
+ L++L LS N L ++F L + ++ LQKN ++ T
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 391 TELLTLDLRDNKF-----FGRIPHQI---NKHSELRVLLLRGNYL--------QGEIPIA 434
+L TLDLRDN IP NK L + L N + +I
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421
Query: 435 LCQLQKLRILDLSHNKLNGSIPSCFANVL 463
L ++ L+IL L+ N+ + +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSEN 450
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 75/401 (18%), Positives = 150/401 (37%), Gaps = 43/401 (10%)
Query: 2 KLKNLTELDLRENNLEGQLP------------WRLSDLTGLKVFDISSNQLSGNLPSVIA 49
+ L LD+ N + + L + + + + A
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 50 NL--TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR-FKTENWIPTFQLKV 106
L +S+ +L LS + +L+VL L N + E + L+V
Sbjct: 262 GLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNL--AYNKINKIADEAFYGLDNLQV 318
Query: 107 LQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165
L L L + S + + ++DL N + + L+ L L +N+ + I
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTI 377
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG-NIPYSIGEMKE 224
+P + + +S N L+ + + LI +S+N E +I Y + +
Sbjct: 378 HFIP-----SIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPH 427
Query: 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-----TYMNLTQLRGLYL 279
L +L L++N+FS + + SLE L + EN + L+ L+ LYL
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339
+N+ + L L +++N L+ + + L++L +S+N L
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLA---PN 542
Query: 340 INNFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNA 378
+ F L +L ++ N+ ++F+N + ++ +
Sbjct: 543 PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 63/341 (18%), Positives = 112/341 (32%), Gaps = 18/341 (5%)
Query: 128 KFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187
+ L T + Q E L LS N + + L+ L++ +
Sbjct: 7 RIAFYRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
Query: 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD-LSATSVNG 246
T+ + L L ++D+ + P + + LF L L S L
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 247 CASLEYLDVSENNFYG-HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG--LVVLDI 303
+L LD+S+N ++ P++ L L+ + +N + L G L +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 304 SNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
+ N L + W + +++ + GN + S S
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN------GWTVDITGNFSNAISKSQAFS 235
Query: 363 FLNLSSIMHLYLQKNALSGQIPSTL--LRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+ IM + + +T L + + LDL F +L+VL
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L N + A L L++L+LS+N L S F
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-25
Identities = 67/344 (19%), Positives = 117/344 (34%), Gaps = 45/344 (13%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ ++ LDL + L LKV +++ N+++ L +L+ L LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N E S + + L N + + + + K +
Sbjct: 323 YNLLG-ELYSSNFYGLPKVAYIDL---QKN--------------HIAIIQDQTFKFLE-- 362
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L+ LDL N L + ++ + LS N + ++ +
Sbjct: 363 -----KLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLPKINL----TANLIH 407
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG-NIPYSIGEMKELFLLDLSRNKFSG-- 237
+S N L + L ++ +++N F + + E L L L N
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467
Query: 238 --DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+L G + L+ L ++ N + +LT LRGL L +N T L +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339
L +LDIS N L P F L VL ++ N +
Sbjct: 528 --LEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELS 566
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-37
Identities = 87/485 (17%), Positives = 174/485 (35%), Gaps = 44/485 (9%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ LDL N + L L+V + S++++ +L SLE+L LSDN+
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNC-SLKVIP- 118
S S+L+ L L N ++T F L+ L++ N + I
Sbjct: 87 S-SLSSSWFGPLSSLKYLNL---MGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L L++ + L L ++ ++ L L + + +L++ +R+
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 179 LDISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGN-------IPYSIGEMKELFLLD 229
L++ + NL P + V + + + + I E+ E+ D
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 230 LSRNKF-------SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282
+ N S +S ++ L + + + + Y L +++ + ++N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 283 HFTGKIKAGLLNS-HGLVVLDISNNLLS---GHIPCWIGNFSYLDVLLMSKNHLE--GNI 336
+ L LD+S NL+ G + L L++S+NHL
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
+ + L L +S N S + L L + + + + ++ E L
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLE--VL 436
Query: 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
D+ +N + L+ L + N L+ +P L ++ +S N+L
Sbjct: 437 DVSNNN-LDSFSLFL---PRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPD 490
Query: 457 SCFAN 461
F
Sbjct: 491 GIFDR 495
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-33
Identities = 77/450 (17%), Positives = 154/450 (34%), Gaps = 60/450 (13%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSG-NLPSVIANLTSLEYLVLS 60
L +L LDL +N+L L+ LK ++ N + S+ NLT+L+ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQLPNCSLKVIPS 119
+ E ++L L + + +LR + + + + L L +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIK--ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 120 FLL-HQYNLKFLDLSSNKLVGNFPTWL--------------------------------- 145
++++L+L L + L
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249
Query: 146 --------MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTV 197
+ T + + + + +L KV+ +R L I + + ++
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSL 308
Query: 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV--NGCASLEYLDV 255
L+K+ I + + +K L LDLS N + S SL+ L +
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
Query: 256 SENNFY--GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP 313
S+N+ + L L L + N F + + L++S+ +
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--- 424
Query: 314 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLY 373
L+VL +S N+L+ + + +L+ LY+S N+L ++ ++ +
Sbjct: 425 VKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKL-KTLPDASLFPVLLVMK 479
Query: 374 LQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
+ +N L R T L + L N +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 74/455 (16%), Positives = 160/455 (35%), Gaps = 57/455 (12%)
Query: 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVS 88
V D S + ++PS + +++ L LS N L +NL+VL L
Sbjct: 6 ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLIL---K 58
Query: 89 NNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQN 148
++ ++ ++ +L+ LDLS N L + +
Sbjct: 59 SS------------RINTIE---------GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGP 96
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207
++L+ L L N + + + L+ L I N + + L L ++I
Sbjct: 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
Query: 208 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG---HI 264
+ S+ ++++ L L ++ + L + +S+ YL++ + N
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215
Query: 265 FPTYMNLTQLRGLYLKNNHFTG-------KIKAGLLNSHGLVVLDISNNLLSGHIPCWIG 317
P + ++ L + + T K+ +L + D + N L P
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275
Query: 318 NFS--------YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFLNLSS 368
S + L + + +L ++ + +++ + + +++F + +L S
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335
Query: 369 IMHLYLQKNALSGQIPST---LLRSTELLTLDLRDNKF--FGRIPHQINKHSELRVLLLR 423
+ L L +N + + L TL L N + + L L +
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395
Query: 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSC 458
N +P + +K+R L+LS + + +C
Sbjct: 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 50/337 (14%), Positives = 106/337 (31%), Gaps = 13/337 (3%)
Query: 127 LKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL 186
D S + P+ L ++ L LS N + I L+ L + ++
Sbjct: 7 SGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61
Query: 187 IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNG 246
I T+ + L L +D+S N+ G + L L+L N + +
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 247 CASLEYLDVSENNFYGHIFPTY-MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
+L+ L + + I LT L L +K L + + L +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLN 365
+ + + + S + L + +L + + R + +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR----GSVLTD 237
Query: 366 LSSIMHLYLQKNALSGQIPSTL-LRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424
S L L + L L + ++ + + +R L +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK--VETVTIRRLHIPQ 295
Query: 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
YL ++ L+K++ + + ++K+ S +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-18
Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 18/243 (7%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
++ + L + + L L S L +K + ++++ S +L SLE+L LS
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLKV 116
+N E L L+ L +S N + L L + +
Sbjct: 343 ENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 117 IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-LQLPKVKHDF 175
+P ++FL+LSS + LEVL +SNN+ L LP+
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNLDSFSLFLPR----- 452
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
L+ L IS N L TLP ++ L+++ IS+N + + L + L N +
Sbjct: 453 LQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 236 SGD 238
Sbjct: 510 DCS 512
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 5/220 (2%)
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 306
A+++ LD+S N L+ L LK++ I+ S L LD+S+N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN 84
Query: 307 LLSGHIPCWIGNFSYLDVLLMSKNHL-EGNIPVQINNFRQLEILYLSENRLFGSI--ASF 363
LS W G S L L + N + N L+ L + F I F
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423
L+S+ L ++ +L +L ++ L L ++ + + S +R L LR
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
L L + + + + F +L
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-37
Identities = 91/453 (20%), Positives = 159/453 (35%), Gaps = 42/453 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L + L + N+ + +DL + + + L +L + S+
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL LT L + ++NN L L L N + I L
Sbjct: 78 NQLTDITPLKNLTK------LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-L 130
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN--SFSGILQLPKVKHDFLRHL 179
+ NL L+LSSN + + T+L+ L N + L L L
Sbjct: 131 KNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLKPLANLTT-----LERL 182
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
DIS+N + + + L L + + N P +G + L L L+ N+
Sbjct: 183 DISSNKV--SDISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--- 234
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
++ +L LD++ N LT+L L L N + L + L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTA--LT 290
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
L+++ N L P I N L L + N++ P +++ +L+ L+ N++
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SD 345
Query: 360 IASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419
++S NL++I L N +S P L T + L L D + P + +
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQAWTN-APVNYKANVSIPN 402
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+ P + D++ N +
Sbjct: 403 TVKNVTGAL-IAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 83/359 (23%), Positives = 132/359 (36%), Gaps = 52/359 (14%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L +L +L N + P L++LT L+ DISSN++S SV+A LT+LE L+ ++
Sbjct: 154 GLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL +LTN L L L LK I +
Sbjct: 209 NQISDITPLGILTN----------------------------LDELSLNGNQLKDIGTL- 239
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL LDL++N++ P + T L L+L N S I L + L +L++
Sbjct: 240 ASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLEL 294
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
+ N L P + L+ L + + NN P + + +L L NK S
Sbjct: 295 NENQLEDISPISN---LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 346
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
+S+ ++ +L N NLT++ L L + +T N +
Sbjct: 347 SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
L P I + ++ N V F Q + G++
Sbjct: 405 KNVTGALI--APATISDGGSYTEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFSGTV 460
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-24
Identities = 76/334 (22%), Positives = 121/334 (36%), Gaps = 35/334 (10%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN---SFSGILQLPKVKHDFLRHLDIS 182
L + + + L+ S G+ L L ++ S
Sbjct: 25 EKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDGVEYLNN-----LTQINFS 76
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
NN L P L KL+ I ++ N P + + L L L N+ +
Sbjct: 77 NNQLTDITPL---KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DID 128
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
+ +L L++S N LT L+ L N K A L L LD
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTT---LERLD 183
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
IS+N +S + + L+ L+ + N + P + L+ L L+ N+L I +
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDIGT 238
Query: 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422
+L+++ L L N +S P L T+L L L N+ P + + L L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294
Query: 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
N L+ PI L+ L L L N ++ P
Sbjct: 295 NENQLEDISPI--SNLKNLTYLTLYFNNISDISP 326
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 65/355 (18%), Positives = 130/355 (36%), Gaps = 29/355 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L++ ++ + +L + ++ +++ I LT+LEYL L+
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PLS L L L + N L+ L L ++ I L
Sbjct: 76 NQITDISPLSNLVK------LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-L 128
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+ + L+L +N + + + N T L L ++ + + + + L L +
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTD--LYSLSL 184
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
+ N + + + L L N P + M L L + NK +
Sbjct: 185 NYNQI--EDISPLAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT---DL 236
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
+ + + L +L++ N +LT+L+ L + +N + L+ L L
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSL 292
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
++NN L IG + L L +S+NH+ P + + +++ + +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-31
Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 26/349 (7%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
+ L S+ + + ++ L ++ K+ + ++ TNLE L L+ N
Sbjct: 23 EGIRAVLQKASVTDVVTQE-ELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGNQI 78
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ I L + L +L I N + T + L L + ++++N P + +
Sbjct: 79 TDISPLSNLVK--LTNLYIGTNKI--TDISALQN-LTNLRELYLNEDNISDISP--LANL 131
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282
+++ L+L N DLS ++ L YL V+E+ NLT L L L N
Sbjct: 132 TKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187
Query: 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 342
L + L N ++ P + N + L+ L + N + P + N
Sbjct: 188 QIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241
Query: 343 FRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
QL L + N++ I + +L+ + L + N +S S L ++L +L L +N+
Sbjct: 242 LSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQ 298
Query: 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
I + L L L N++ P+A L K+ D ++ +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 61/353 (17%), Positives = 122/353 (34%), Gaps = 26/353 (7%)
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163
L + I L + + ++ L ++ +
Sbjct: 2 AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57
Query: 164 GILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMK 223
I + + + L +L+++ N + P + L KL + I N ++ +
Sbjct: 58 SIQGIEYLTN--LEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQNLT 110
Query: 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNH 283
L L L+ + S + + + L++ N+ + N+T L L + +
Sbjct: 111 NLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK 166
Query: 284 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343
+ N L L ++ N + P + + + L N + P + N
Sbjct: 167 VKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220
Query: 344 RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
+L L + N++ ++ NLS + L + N +S + + T+L L++ N+
Sbjct: 221 TRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277
Query: 404 FGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
+N S+L L L N L E + L L L LS N + P
Sbjct: 278 --SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 68/309 (22%), Positives = 123/309 (39%), Gaps = 27/309 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NL L+L N + P LS+L L I +N+++ S + NLT+L L L++
Sbjct: 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSF 120
+N PL+ LT + L + N + + L L + +K +
Sbjct: 120 DNISDISPLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI 173
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+ +L L L+ N++ P + + T+L N + I + + L L
Sbjct: 174 -ANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTR--LNSLK 227
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
I NN + P L +L ++I N ++ ++ +L +L++ N+ S
Sbjct: 228 IGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS---D 279
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ +N + L L ++ N LT L L+L NH T L + +
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDS 337
Query: 301 LDISNNLLS 309
D +N ++
Sbjct: 338 ADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%)
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
G L ++ P + + ++ K + + + L ++ ++
Sbjct: 1 GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416
SI L+++ +L L N ++ P + L L L + NK + +
Sbjct: 57 -ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKI--TDISALQNLTN 111
Query: 417 LRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
LR L L + + L L K+ L+L N +
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP 150
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 71/457 (15%), Positives = 144/457 (31%), Gaps = 27/457 (5%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ +++L+ L +K D+S N LS + +A T LE L LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
L L+ LR L ++NN + + ++ L N ++ +
Sbjct: 69 VLYETLDLESLST------LRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDI 181
K + L++NK+ + ++ L L N + D L HL++
Sbjct: 120 Q--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
N + + + KL +D+S N + + + L NK +
Sbjct: 177 QYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
++ +LE+ D+ N F+ + R + +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLF 357
+ L + +G+ + + N + + + +
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349
Query: 358 G-SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416
L + + L +K AL Q+ + EL + + H + S
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSP 408
Query: 417 LRVL-LLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
L++L + Y + + Q +R D+ +K
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 63/424 (14%), Positives = 137/424 (32%), Gaps = 49/424 (11%)
Query: 44 LPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103
+ + N + ++D++ + + SL + N++ L L S N
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDL---SGN------------P 45
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163
L + + L L+ L+LSSN L +++ + L L L+NN
Sbjct: 46 LSQIS---------AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93
Query: 164 GILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMK 223
+L P + L +NNN I + + G + + ++ N G
Sbjct: 94 ELLVGPS-----IETLHAANNN-ISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRS 144
Query: 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNH 283
+ LDL N+ A +LE+L++ N + + +L+ L L +N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNK 202
Query: 284 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE-GNIPVQINN 342
+ ++ G+ + + NN L I + L+ + N G + +
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 343 FRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL-----LRSTELLTLD 397
++++ + + + + L+ E L
Sbjct: 261 NQRVQTVAKQTVKKLTGQN-EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319
Query: 398 LRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
+ ++ R+ + + R + + I + Q L+ L+ + +
Sbjct: 320 GQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 458 CFAN 461
Sbjct: 379 GRRA 382
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 57/373 (15%), Positives = 111/373 (29%), Gaps = 24/373 (6%)
Query: 2 KLKNLTELDLRENNLE--GQLP--------------WRLSDLTGLKVFDISSNQLSGNLP 45
L L LDL N ++ P S G K +++N+++
Sbjct: 78 SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD 137
Query: 46 SVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105
+ ++YL L N L + LE L L N + + + +LK
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL---QYNFIYDVKGQVVFAKLK 194
Query: 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS-G 164
L L + L + + ++ L +NKLV L + + NLE L N F G
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCG 252
Query: 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE 224
L+ K+ ++ + + + TV + + +K
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312
Query: 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284
LS + A +D + + I + L K
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372
Query: 285 TGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNF 343
+ + +H + + + + S L +L + E + Q
Sbjct: 373 D-EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431
Query: 344 RQLEILYLSENRL 356
+ + +++
Sbjct: 432 NAIRDWDMYQHKE 444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 9/171 (5%)
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352
N + + ++++ L + + + L +S N L + F +LE+L LS
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 353 ENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQIN 412
N L+ +LS++ L L N + LL + TL +N R+ +
Sbjct: 67 SNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVS--CS 117
Query: 413 KHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
+ + + L N + + +++ LDL N+++ + A
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 86/467 (18%), Positives = 146/467 (31%), Gaps = 86/467 (18%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L E +NL ++P ++ + + ++ N P + L D
Sbjct: 10 NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT--FQLKVLQLPNCSLKVIPSF 120
+ L+++N + +P L+ L SL +P
Sbjct: 69 LDRQ---------------AHELELNNL-GLSS---LPELPPHLESLVASCNSLTELPEL 109
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+L + + L P LE L +SNN + +L L+ +D
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLPELQNSSF--LKIID 159
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+ NN+L LP L I N E +P + + L + N
Sbjct: 160 VDNNSLK-KLPDL----PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK---- 208
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ SLE + N P NL L +Y NN + + L
Sbjct: 209 -KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEA 261
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
L++ +N L+ +P + ++LDV + L P L L S N +
Sbjct: 262 LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLC 313
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+L L + N L ++P+ L L N +P L+ L
Sbjct: 314 DLPPSLE---ELNVSNNKLI-ELPALP---PRLERLIASFNH-LAEVPELP---QNLKQL 362
Query: 421 LLRGNYLQGEIPIALCQLQKLRI----------------LDLSHNKL 451
+ N L+ E P ++ LR+ L + N L
Sbjct: 363 HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-26
Identities = 97/454 (21%), Positives = 152/454 (33%), Gaps = 74/454 (16%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ EL+L L LP L+ S N L+ LP + +L SL +
Sbjct: 70 DRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLKVIP 118
+L L VSNN + + +P LK++ + N SLK +P
Sbjct: 125 ALS-----------DLPPLLEYLGVSNN-QLEK---LPELQNSSFLKIIDVDNNSLKKLP 169
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+L+F+ +N+L P +QN L + NNS + LP L
Sbjct: 170 DLPP---SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLPL----SLES 219
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
+ NN L + L L I N + +P ++ L + D
Sbjct: 220 IVAGNNIL--EELPELQN-LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL 275
Query: 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL 298
SL +LDVSEN F G L L +N + + L
Sbjct: 276 PQ--------SLTFLDVSENIFSG--LSEL--PPNLYYLNASSNEIR-SLCDLPPS---L 319
Query: 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358
L++SNN L +P L+ L+ S NHL +P N L+ L++ N L
Sbjct: 320 EELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE 371
Query: 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418
++ L+ N+ ++P L L + N P +
Sbjct: 372 FPDIPESVED-----LRMNSHLAEVPELP---QNLKQLHVETNPL-REFPDIPES---VE 419
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
L + + A KL H+ +
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-20
Identities = 68/356 (19%), Positives = 119/356 (33%), Gaps = 41/356 (11%)
Query: 107 LQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNN-TNLEVLRLSNNSFSGI 165
+ N S + L H NL + + + + + + +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKEL 225
+L L+++N L +LP+ L+ L S N+ +P +K L
Sbjct: 63 SRLRDCLDRQAHELELNNLGL-SSLPELPPH-LESL---VASCNSLT-ELPELPQSLKSL 116
Query: 226 FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT 285
+ + + S LEYL VS N P N + L+ + + NN
Sbjct: 117 LVDNNNLKALSDLPP--------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK 166
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345
K+ + L + NN L +P + N +L + N L+ +P +
Sbjct: 167 -KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS--- 216
Query: 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405
LE + N L + NL + +Y N L +P L L++RDN
Sbjct: 217 LESIVAGNNIL-EELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNY-LT 270
Query: 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+P + L V + L P L L+ S N++ S+ +
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPS 318
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 71/355 (20%), Positives = 127/355 (35%), Gaps = 53/355 (14%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L +D+ N+L+ +LP L + +NQL LP + NL L + +
Sbjct: 151 NSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELPE-LQNLPFLTAIYADN 204
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N+ + + P +LE + +N L E L + N LK +P
Sbjct: 205 NSLK-KLPDLP----LSLESIVAG--NNILEELPELQNLP-FLTTIYADNNLLKTLPDLP 256
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+L+ L++ N L T L + +L L +S N FSG+ +LP L +L+
Sbjct: 257 P---SLEALNVRDNYL-----TDLPELPQSLTFLDVSENIFSGLSELPPN----LYYLNA 304
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
S+N I +L + L++L ++S N +P ++ L S N + ++
Sbjct: 305 SSNE-IRSLCDLPPS-LEEL---NVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPE 354
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
+L+ L V N FP + L + ++ + L L
Sbjct: 355 L----PQNLKQLHVEYNPL--REFPD--IPESVEDLRMNSH-----LAEVPELPQNLKQL 401
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
+ N L P + L + + + +LE +
Sbjct: 402 HVETNPLR-EFPDIPESVEDLRM---NSERVVDPYEFAHETTDKLEDDVFEHHHH 452
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 7e-28
Identities = 65/355 (18%), Positives = 126/355 (35%), Gaps = 30/355 (8%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L N + + + + L +++ +++ Q+ A +++ L + N
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
+ P + N L VL L N + T +L L + N +L+ I
Sbjct: 104 AIR-YLPPHVFQNVPLLTVLVL---ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
+L+ L LSSN+L + + +L +S N S + + L
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLSTLAIPI-----AVEEL 210
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
D S+N+ I + V +L ++ + NN + + L +DLS N+ +
Sbjct: 211 DASHNS-INVVRGP---VNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KI 263
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
LE L +S N + + L+ L L +NH ++ L
Sbjct: 264 MYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
L + +N + + + L L +S N + N + FR + + +
Sbjct: 322 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 4e-27
Identities = 68/330 (20%), Positives = 122/330 (36%), Gaps = 17/330 (5%)
Query: 123 HQYNLKFLDLSSNKLVGN-FPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
QY+ F D+ + + + + N +++ N++ + + L++
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
++ I + + + + N P+ + L +L L RN S L
Sbjct: 77 NDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
+ L L +S NN T+ T L+ L L +N T + L+ S L
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHA 191
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361
++S NLLS + ++ L S N + V+ +L IL L N L A
Sbjct: 192 NVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL-TDTA 242
Query: 362 SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLL 421
LN ++ + L N L + ++ L L + +N+ + L+VL
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLD 301
Query: 422 LRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
L N+L + Q +L L L HN +
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSI 330
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-27
Identities = 62/328 (18%), Positives = 119/328 (36%), Gaps = 22/328 (6%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
N K + ++ + P L+ + +E+L L++ I ++ L + N
Sbjct: 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
I LP ++ + L ++ + +N+ +L L +S N + +
Sbjct: 105 -IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
SL+ L +S N H+ + + L + N + L + LD S+
Sbjct: 163 ATTSLQNLQLSSNRL-THVDLS--LIPSLFHANVSYNLLST-----LAIPIAVEELDASH 214
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL 364
N ++ + L +L + N+L + + N+ L + LS N L F+
Sbjct: 215 NSIN-VVR--GPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 365 NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424
+ + LY+ N L + L LDL N + + L L L
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDH 327
Query: 425 NYLQGEIPIALCQLQKLRILDLSHNKLN 452
N + + ++ L+ L LSHN +
Sbjct: 328 NSIV-TLKLST--HHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 71/395 (17%), Positives = 130/395 (32%), Gaps = 45/395 (11%)
Query: 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ 65
++ + + + L K+ ++ + +++ + +E L L+D +
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 66 GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY 125
E ++ L + N ++ L P +
Sbjct: 83 -EIDTYAFAYAHTIQKLYM---GFN------------AIRYLP---------PHVFQNVP 117
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
L L L N L + P + N L L +SNN+ I L++L +S+N
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
+ + ++ + L ++S N ++ + LD S N ++
Sbjct: 177 -LTHVDLSL---IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS----INVVRGP 223
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
L L + NN +N L + L N + + L L ISN
Sbjct: 224 VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLN 365
N L + + L VL +S NHL ++ F +LE LYL N +
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI--VTLKLST 337
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
++ +L L N L R+ +D D
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 372
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 6e-20
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 24/260 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ LT L L N+L LP + + L +S+N L TSL+ L LS
Sbjct: 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N LSL+ + L VS N ++ L + S+ V+
Sbjct: 174 SNRLT-HVDLSLIPS------LFHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+ L L L N L + + N L + LS N I+ P VK L L
Sbjct: 224 VN--VELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
ISNN + L + L ++D+S N+ ++ + + L L L N +
Sbjct: 279 ISNNR-LVALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IV 331
Query: 241 ATSVNGCASLEYLDVSENNF 260
++ +L+ L +S N++
Sbjct: 332 TLKLSTHHTLKNLTLSHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 19/270 (7%)
Query: 196 TVLQKLMLIDISKNNFEGNIPYSIGE--MKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253
+ + D+ + ++ + + + ++ + L A ++ +E L
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74
Query: 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHI 312
++++ + ++ LY+ N + + N L VL + N LS
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 313 PCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIASFLNLSSIMH 371
N L L MS N+LE I L+ L LS NRL + + S+ H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL--THVDLSLIPSLFH 190
Query: 372 LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431
+ N LS TL + LD N + +N L +L L+ N L +
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRGPVNVE--LTILKLQHNNLT-DT 241
Query: 432 PIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L L +DLS+N+L + F
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVK 270
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 3/177 (1%)
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347
I + L + I + + ++ + + +++FRQ+E
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 348 ILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406
+L L++ ++ +F +I LY+ NA+ P L L L N
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SS 131
Query: 407 IPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462
+P I + +L L + N L+ L+ L LS N+L S ++
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 73/318 (22%), Positives = 129/318 (40%), Gaps = 30/318 (9%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
LDL +N ++ + L+ +++ N +S P NL +L L L N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
+ PL + T SNL L + S N + + LK L++ + L I
Sbjct: 93 K-LIPLGVFTGLSNLTKLDI---SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 123 -HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFL 176
+L+ L L L + PT + + L VLRL + + + I +L + L
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-----L 202
Query: 177 RHLDISNNNLIGTLPQNM--GTVLQKLMLIDISKNNFEGNIPY-SIGEMKELFLLDLSRN 233
+ L+IS+ + T+ N G L L I+ N +PY ++ + L L+LS N
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSL---SITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258
Query: 234 KFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTGKIKAGL 292
S + + ++ L+ + + + P + L LR L + N T ++ +
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315
Query: 293 LNS-HGLVVLDISNNLLS 309
+S L L + +N L+
Sbjct: 316 FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 68/384 (17%), Positives = 123/384 (32%), Gaps = 74/384 (19%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQG 66
+ +P + T ++ D+ N++ A+ LE L L++N
Sbjct: 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69
Query: 67 EFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ-Y 125
N NL L L +N LK+IP +
Sbjct: 70 AVEPGAFNNLFNLRTLGL---RSN----------------------RLKLIPLGVFTGLS 104
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFLRHLD 180
NL LD+S NK+V ++ Q+ NL+ L + +N I L L L
Sbjct: 105 NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-----LEQLT 158
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+ N L I + L +L L + +
Sbjct: 159 LEKCN-----------------LTSIPTEALSH--------LHGLIVLRLRHLNIN-AIR 192
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLV 299
S L+ L++S + + P + L L + + + T + + L
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLR 251
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFG 358
L++S N +S + L + + L + L +L +S N+L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL-T 309
Query: 359 SIA--SFLNLSSIMHLYLQKNALS 380
++ F ++ ++ L L N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 68/334 (20%), Positives = 123/334 (36%), Gaps = 16/334 (4%)
Query: 101 TFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160
+ Q + + +P + + LDL N++ + +LE L L+ N
Sbjct: 10 SAQDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNEN 66
Query: 161 SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG 220
S + LR L + +N + +P + T L L +DIS+N + Y
Sbjct: 67 IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM--NLTQLRGLY 278
++ L L++ N +S + +G SLE L + + N PT +L L L
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLR 182
Query: 279 LKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337
L++ + I+ + L VL+IS+ + L L ++ +L
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 338 VQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT 395
+ + + L L LS N + +I L + + L L+ P L
Sbjct: 242 LAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Query: 396 LDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQ 428
L++ N+ + + L L+L N L
Sbjct: 301 LNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 6e-22
Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 20/266 (7%)
Query: 3 LKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NL L LR N L+ +P + L+ L DIS N++ L + +L +L+ L + D
Sbjct: 79 LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSF 120
N+ + ++LE L L NL + L VL+L + ++ I +
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTL--EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHD 174
+ Y LK L++S + NL L +++ + + + L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVY---- 249
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
LR L++S N I T+ +M L +L I + PY+ + L +L++S N+
Sbjct: 250 -LRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 235 FSGDLSATSVNGCASLEYLDVSENNF 260
+ L + + +LE L + N
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 17/241 (7%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L NLT+LD+ EN + L + DL LK ++ N L + L SLE L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRF-KTENWIPTFQLKVLQL-PNCSLKVIPSF 120
N P L++ L VLRL N+ + ++ ++LKVL++ L +
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRL--RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDF 175
L+ NL L ++ L P +++ L L LS N S I +L +
Sbjct: 220 CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR----- 273
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
L+ + + + + L L ++++S N + L L L N
Sbjct: 274 LQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 236 S 236
+
Sbjct: 333 A 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 3e-20
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 10/229 (4%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTG 286
LDL +N+ L+ LE L+++EN + P + NL LR L L++N
Sbjct: 37 LDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 287 KIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFR 344
I G+ L LDIS N + + + L L + N L I + +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLN 152
Query: 345 QLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
LE L L + L SI + +L ++ L L+ ++ + R L L++
Sbjct: 153 SLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
+ + L L + L +A+ L LR L+LS+N +
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 7/196 (3%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
T+ R L L N + + L L+++ N++S P N L L + N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 332 LEGNIPVQI-NNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
L+ IP+ + L L +SEN++ F +L ++ L + N L I
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149
Query: 390 S-TELLTLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447
L L L IP + H L VL LR + + +L +L++L++S
Sbjct: 150 GLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 448 HNKLNGSIPSCFANVL 463
H ++ L
Sbjct: 209 HWPYLDTMTPNCLYGL 224
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 16/164 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L L L++ + L I+ L+ + +L L +L LS N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ----LKVLQLPNCSLKVIP 118
S+L L+ ++L V L F+ L+VL + L +
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQL--VGGQLAVVEPY---AFRGLNYLRVLNVSGNQLTTLE 312
Query: 119 SFLLHQ-YNLKFLDLSSNKLVGN-----FPTWLMQNNTNLEVLR 156
+ H NL+ L L SN L + + N N +
Sbjct: 313 ESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPT 356
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-26
Identities = 83/465 (17%), Positives = 159/465 (34%), Gaps = 43/465 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L N + + + + L +++ +++ Q+ A +++ L + N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
+ P + N L VL L N + T +L L + N +L+ I
Sbjct: 110 AIR-YLPPHVFQNVPLLTVLVL---ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
+L+ L LSSN+L + + +L +S N S + + L
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLSTLAIPI-----AVEEL 216
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
D S+N+ I + V +L ++ + NN + + L +DLS N+ +
Sbjct: 217 DASHNS-INVVRGP---VNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KI 269
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
LE L +S N + + L+ L L +NH ++ L
Sbjct: 270 MYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYLSEN---- 354
L + +N + + + L L +S N + N + N + + ++
Sbjct: 328 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384
Query: 355 -RLFGSIASFLNLSSIMHLYLQKNALSG--------QIPSTLLRSTELLTLDLRDNKFFG 405
+L + + + LQ AL+ Q + + + G
Sbjct: 385 YQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQG 444
Query: 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450
+P Q N+ E V LR +Q + Q Q L+ L +
Sbjct: 445 GVPLQGNEQLEAEVNELR-AEVQQLTNEQIQQEQLLQGLHAEIDT 488
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-25
Identities = 72/383 (18%), Positives = 138/383 (36%), Gaps = 31/383 (8%)
Query: 34 DISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNL-- 91
D+ + + + L + + + ++ + + P +LL + +E+L L ++
Sbjct: 35 DMQTQDVYFGFEDI--TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL---NDLQIE 88
Query: 92 RFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNT 150
T + ++ L + +++ +P + L L L N L + P + N
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147
Query: 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN 210
L L +SNN+ I L++L +S+N + + + ++ L ++S N
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLS---LIPSLFHANVSYNL 203
Query: 211 FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMN 270
++ + LD S N ++ L L + NN +N
Sbjct: 204 LS-----TLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNL--TDTAWLLN 252
Query: 271 LTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 330
L + L N + + L L ISNN L + + L VL +S N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311
Query: 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
HL ++ F +LE LYL N + ++ +L L N L R
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSI--VTLKLSTHHTLKNLTLSHNDWDCNSLRALFR- 367
Query: 391 TELLTLDLRDNKFFGRIPHQINK 413
+ + D +I +Q+
Sbjct: 368 -NVARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 1e-21
Identities = 58/326 (17%), Positives = 113/326 (34%), Gaps = 32/326 (9%)
Query: 146 MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLID 205
+Q + + + + + + + + N+ + LP + +++ L++
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLN 81
Query: 206 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF 265
++ E Y+ + L + N L L L + N+
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL--SSL 138
Query: 266 PTYM--NLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYL 322
P + N +L L + NN+ +I+ + L L +S+N L+ H+ + L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 194
Query: 323 DVLLMSKNHLEGNIPVQIN-----------------NFRQLEILYLSENRLFGSIASFLN 365
+S N L + + I +L IL L N L A LN
Sbjct: 195 FHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN 252
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425
++ + L N L + ++ L L + +N+ + L+VL L N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN 311
Query: 426 YLQGEIPIALCQLQKLRILDLSHNKL 451
+L + Q +L L L HN +
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSI 336
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 4e-19
Identities = 79/464 (17%), Positives = 146/464 (31%), Gaps = 41/464 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ LT L L N+L + L +S+N L TSL+ L LS
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N LSL+ + L VS N ++ L + S+ V+ +
Sbjct: 181 NRLT-HVDLSLIPS------LFHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGPV 230
Query: 122 LHQYNLKFLDLSSNKL--VGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L L L N L N L + LS N I+ P VK L L
Sbjct: 231 N--VELTILKLQHNNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
ISNN + L + L ++D+S N+ ++ + + L L L N +
Sbjct: 284 YISNNR-LVALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----I 336
Query: 240 SATSVNGCASLEYLDVSENNF-YGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH-- 296
++ +L+ L +S N++ + + N+ + + L
Sbjct: 337 VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 396
Query: 297 -----GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
++ I+ + + G S D + ++ + E L
Sbjct: 397 DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456
Query: 352 SENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411
N L + + + +Q+ L + + + + L +++
Sbjct: 457 EVNEL------RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV 510
Query: 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSI 455
H + R Q A + ++ L+ + L +
Sbjct: 511 FTHLKERQAFKLRE-TQARRTEADAKQKETEDLEQENIALEKQL 553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 57/331 (17%), Positives = 118/331 (35%), Gaps = 43/331 (12%)
Query: 44 LPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103
+ + N + ++D++ + + SL + N++ L L S N
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDL---SGN------------P 45
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163
L + + L L+ L+LSSN L +++ + L L L+NN
Sbjct: 46 LSQIS---------AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93
Query: 164 GILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMK 223
+L P + L +NNN I + + G + + ++ N G
Sbjct: 94 ELLVGPS-----IETLHAANNN-ISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRS 144
Query: 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNH 283
+ LDL N+ A +LE+L++ N + + +L+ L L +N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNK 202
Query: 284 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE-GNIPVQINN 342
+ ++ G+ + + NN L I + L+ + N G + +
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 343 FRQLEILYLSENR-LFGSIASFLNLSSIMHL 372
++++ + + L G + ++ H
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 20/283 (7%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ +++L+ L +K D+S N LS + +A T LE L LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
L L+ LR L ++NN + + ++ L N ++ +
Sbjct: 69 VLYETLDLESLST------LRTLDLNNN---YVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDI 181
K + L++NK+ + ++ L L N + D L HL++
Sbjct: 120 Q--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
N + + + KL +D+S N + + + L NK +
Sbjct: 177 QYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 242 TSVNGCASLEYLDVSENNFY-GHIFPTYMNLTQLRGLYLKNNH 283
++ +LE+ D+ N F+ G + + +++ + +
Sbjct: 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 17/257 (6%)
Query: 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257
+ + ++ ++ + + + LDLS N S +SA + LE L++S
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 258 NNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG 317
N + +L+ LR L L NN+ LL + L +NN +S +
Sbjct: 68 NVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117
Query: 318 NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQ 375
+ ++ N + + +++ L L N + + ++ HL LQ
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435
N + + L TLDL NK + + + + + LR N L I AL
Sbjct: 178 YNFIYDVKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233
Query: 436 CQLQKLRILDLSHNKLN 452
Q L DL N +
Sbjct: 234 RFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 52/274 (18%), Positives = 98/274 (35%), Gaps = 18/274 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
N+ ELDL N L L+ T L++ ++SSN L + +L++L L L++
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNN 89
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N + L ++E L +NN+ + + K + L N + ++
Sbjct: 90 NY------VQELLVGPSIETLHA--ANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLD 139
Query: 122 LHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
+++LDL N++ L ++ LE L L N + L+ LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLD 197
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+S+N L + + + I + N I ++ + L DL N F
Sbjct: 198 LSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQL 274
+ ++ + + L
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 9/160 (5%)
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352
N + + ++++ L + + + L +S N L + F +LE+L LS
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 353 ENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQIN 412
N L +LS++ L L N + LL + TL +N R+
Sbjct: 67 SNVL-YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVSCSRG 119
Query: 413 KHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+ + + L N + + +++ LDL N+++
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 15/69 (21%), Positives = 22/69 (31%)
Query: 383 IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLR 442
I + D+ + ++ L L GN L L KL
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 443 ILDLSHNKL 451
+L+LS N L
Sbjct: 62 LLNLSSNVL 70
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 92/428 (21%), Positives = 158/428 (36%), Gaps = 40/428 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLS 60
+ L LDL N L + LK D+S N + + N++ L++L LS
Sbjct: 67 FNQELEYLDLSHNKLVK-ISCHP--TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTEN-----WIPTFQLKVLQLPNCSLK 115
+ + L + ++L + ++L V + E+ T L ++ N
Sbjct: 124 TTHLEKSSVLPI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179
Query: 116 VIPSFLLHQY-NLKFLDLSSN----------KLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164
I + NL+ ++ ++ T +N L + + NSF
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239
Query: 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNM----GTVLQKLMLIDISKNNFEGNIPYSIG 220
ILQL V H + + ISN L G L GT L+ L + + + F Y
Sbjct: 240 ILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280
+ + + + + + + + + +LD S N +F +LT+L L L+
Sbjct: 298 IFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 281 NNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGN 335
N KI L LDIS N +S G+ S+ L L MS N L
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDT 414
Query: 336 IPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT 395
I + ++++L L N++ + L ++ L + N L R T L
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 396 LDLRDNKF 403
+ L N +
Sbjct: 473 IWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-25
Identities = 93/470 (19%), Positives = 152/470 (32%), Gaps = 36/470 (7%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ T L++ +N + + L+ L++ IS N++ SV LEYL LS N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLKVIP- 118
+ N L+ L +S N F F QLK L L L+
Sbjct: 81 LV-KISCHPTVN------LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132
Query: 119 -SFLLHQYNLKFLDLSSNKLVGNFPTWLMQ-NNTNLEVLRLSNNSFSGILQLPKVKHDFL 176
+ L L P L N +L ++ +N F IL + L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192
Query: 177 RHLDISNNNLIGTLPQ--------NMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228
+I L L L +I + ++
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252
Query: 229 DLSRNKFSG----DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284
+S K G S +L V + F Y + + +
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312
Query: 285 TGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344
+ LD SNNLL+ + G+ + L+ L++ N L+ +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT 371
Query: 345 ---QLEILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399
L+ L +S+N + S++ L + N L+ I L ++ LDL
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLH 429
Query: 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
NK IP Q+ K L+ L + N L+ +L L+ + L N
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 52/330 (15%), Positives = 107/330 (32%), Gaps = 22/330 (6%)
Query: 150 TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
+L +S N S + + LR L IS+N I L ++ Q+L +D+S N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN 79
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
S L LDLS N F + L++L +S +
Sbjct: 80 KLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI---SNNLLSGHIPCWIGNFSYLDVL- 325
+L + L + + K L L I +N + + + L++
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 326 ---LMSKNHLEGNIPVQINNFRQLEILYLSENRL------FGSIASFLNLSSIMHLYLQK 376
++ N + + ++ L+ N + F I + +++ + +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256
Query: 377 NALSGQIPSTLLRST-----ELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431
L GQ+ + L + + F + S + + + +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 432 PIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ ++ LD S+N L ++ +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ LDL N ++ +P ++ L L+ +++SNQL + LTSL+ + L N
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 63 NFQ 65
+
Sbjct: 479 PWD 481
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 63/303 (20%), Positives = 101/303 (33%), Gaps = 45/303 (14%)
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISK 208
N VL + + G+ LP + L I +NNL +LP L+ L ++S
Sbjct: 39 NNGNAVLNVGES---GLTTLPDCLPAHITTLVIPDNNLT-SLPALPPE-LRTL---EVSG 90
Query: 209 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268
N ++P + EL + S L L + N P
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV- 138
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
L+ L + +N + A L L NN L+ +P L V S
Sbjct: 139 -LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSV---S 189
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL 388
N L ++P + +L L S + L + N L+ +P
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLT-SLPVLP- 240
Query: 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
+EL L + N+ +P + L L + N L +P +L L ++L
Sbjct: 241 --SELKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293
Query: 449 NKL 451
N L
Sbjct: 294 NPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 75/399 (18%), Positives = 125/399 (31%), Gaps = 73/399 (18%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L++ E+ L LP L + I N L+ +LP++ L +LE +S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
P+ L L + L +PS
Sbjct: 92 QLT-SLPVLP----PGLLELSIFSNPLT----------------------HLPALPS--- 121
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
L L + N+L + P L+ L +S+N + + LP L L
Sbjct: 122 ---GLCKLWIFGNQL-TSLPVLP----PGLQELSVSDNQLASLPALPS----ELCKLWAY 169
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
NN L +LP LQ+L +S N ++P E+ +L+ + S
Sbjct: 170 NNQLT-SLPMLPSG-LQEL---SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS-- 221
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
L+ L VS N P ++L+ L + N T + L+ L
Sbjct: 222 ------GLKELIVSGNRL--TSLPV--LPSELKELMVSGNRLT-SLPMLPSG---LLSLS 267
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
+ N L+ +P + + S + + N L + R + AS
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326
Query: 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
+ +HL + L + DN
Sbjct: 327 APRETRALHLAAA-DWLVPAREGEPAPADRWHMFGQEDN 364
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 3e-21
Identities = 72/422 (17%), Positives = 123/422 (29%), Gaps = 76/422 (18%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ + R G V ++ + L+ LP + + LV+ DNN
Sbjct: 16 RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN 72
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
P +L+ L++ L +P
Sbjct: 73 LT-SLPALP-----------------------------PELRTLEVSGNQLTSLPVLPPG 102
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
L L P + L L + N + + LP L+ L +S+
Sbjct: 103 LLELSIFSNPLTHL----PALP----SGLCKLWIFGNQLTSLPVLP----PGLQELSVSD 150
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
N L +LP L KL N ++P ++E L +S N+ + L
Sbjct: 151 NQL-ASLPALPSE-LCKL---WAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLP--- 197
Query: 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
+ L L N P + L+ L + N T + L L +
Sbjct: 198 -TLPSELYKLWAYNNRL--TSLPA--LPSGLKELIVSGNRLTS-LPVLPSE---LKELMV 248
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASF 363
S N L+ +P L L + +N L +P + + + L N L
Sbjct: 249 SGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423
L + Y ++ R T L L D +P + + + +
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL----VPAREGEPAPADRWHMF 359
Query: 424 GN 425
G
Sbjct: 360 GQ 361
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-16
Identities = 58/299 (19%), Positives = 98/299 (32%), Gaps = 47/299 (15%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L+ +L + +GL I NQL+ +LP + L L +SD
Sbjct: 102 GLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQELS---VSD 150
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT--FQLKVLQLPNCSLKVIPS 119
N P S L L +N L +P L+ L + + L +P+
Sbjct: 151 NQLA-SLPALP----SELCKLWAY--NNQLTS-----LPMLPSGLQELSVSDNQLASLPT 198
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179
L L +N+L T L + L+ L +S N + + LP L+ L
Sbjct: 199 LPS---ELYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLTSLPVLPSE----LKEL 246
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
+S N L +LP L L + +N +P S+ + ++L N S +
Sbjct: 247 MVSGNRLT-SLPMLPSG-LLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ER 299
Query: 240 SATSVNGCASLEYLD---VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+ ++ S + + L +L A +
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425
+ L + ++ L+ +P L + TL + DN +P ELR L + GN
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNL-TSLPALP---PELRTLEVSGN 91
Query: 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
L +P+ L +L I L
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG 122
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 56/351 (15%), Positives = 100/351 (28%), Gaps = 52/351 (14%)
Query: 104 LKVLQLPNCS-LKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
+ L + L+ L D + N+ N ++ + +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRAL 68
Query: 163 SGIL-QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGE 221
L L++ + L P L L + I +P ++ +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125
Query: 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
L L L+RN L A S+ L L + LT+L
Sbjct: 126 FAGLETLTLARNPLR-ALPA-SIASLNRLRELSIRACP----------ELTEL------- 166
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
L S L L + + ++P I
Sbjct: 167 ----------------------PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203
Query: 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
N + L+ L + + L + +L + L L+ P L L L+D
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+P I++ ++L L LRG +P + QL I+ + +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 54/347 (15%), Positives = 103/347 (29%), Gaps = 52/347 (14%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L + + LS D + + N + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
+ LE L+L + L P
Sbjct: 67 ALK-ATA-------DLLEDATQPG-----------------RVALELRSVPLPQFPDQAF 101
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF----SGILQLPKVKHDFLRH 178
+L+ + + + L+ P + Q LE L L+ N + I L + LR
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNR-----LRE 154
Query: 179 LDISNNNLIGTLPQNMG--------TVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230
L I + LP+ + L L + + ++P SI ++ L L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213
Query: 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKA 290
+ S L +++ LE LD+ + P + L+ L LK+ +
Sbjct: 214 RNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 291 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337
+ L LD+ + +P I ++L+ HL+ +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLD 317
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 31/248 (12%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L+LR L Q P + L+ L+ I + L LP + LE L L+
Sbjct: 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKT-----------ENWIPTFQLKVLQLP 110
N + P S+ ++L LR L + L+ L+L
Sbjct: 137 NPLR-ALPASI----ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF-----SGI 165
++ +P+ + + NLK L + ++ L + + LE L L +
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI-HHLPKLEELDLRGCTALRNYPPIF 249
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKEL 225
L+ L + + + + TLP ++ L +L +D+ +P I ++
Sbjct: 250 GGRAP-----LKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 226 FLLDLSRN 233
++ + +
Sbjct: 304 CIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-23
Identities = 44/295 (14%), Positives = 93/295 (31%), Gaps = 18/295 (6%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
+L + + + Q+ D ++ + + + +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
L++ L+ L+ + + ++ +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVL-LMSKNHLE--------GNIPVQINNFRQL 346
GL L ++ N L +P I + + L L + + L + + L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
Query: 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406
+ L L + AS NL ++ L ++ + LS + + +L LDLR
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244
Query: 407 IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
P + L+ L+L+ +P+ + +L +L LDL +PS A
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 56/351 (15%), Positives = 112/351 (31%), Gaps = 47/351 (13%)
Query: 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ-LKVLQ 108
+ + E L + +L H L + ++ R+ + ++
Sbjct: 10 HSSGRENLYFQGST-------ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62
Query: 109 LPNCSLKVIPSFL--LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF---- 162
+LK L Q L+L S L FP ++L+ + +
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLMELP 120
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ Q L L ++ N L LP ++ + L +L + I +P +
Sbjct: 121 DTMQQFAG-----LETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLAST 173
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM-NLTQLRGLYLKN 281
G +L+ L + P + NL L+ L ++N
Sbjct: 174 DAS----------------GEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRN 215
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL-LMSKNHLEGNIPVQI 340
+ + + + + L LD+ + P G + L L L ++L +P+ I
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDI 273
Query: 341 NNFRQLEILYLSENRLFGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
+ QLE L L + + L + + + + L Q+ +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHRPVA 323
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 25/181 (13%)
Query: 2 KLKNLTELDLRENNLEGQLP---------WRLSDLTGLKVFDISSNQLSGNLPSVIANLT 52
L L EL +R +LP L L+ + + +LP+ IANL
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206
Query: 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-----QLKVL 107
+L+ L + ++ ++ +L L L + + P LK L
Sbjct: 207 NLKSLKIRNSPLS-ALGPAI----HHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRL 258
Query: 108 QLPNCS-LKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL 166
L +CS L +P + L+ LDL + P+ + ++ + + + +
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQLD 317
Query: 167 Q 167
Q
Sbjct: 318 Q 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 13/128 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L+NL L +R + L L + L L+ D+ N P + L+ L+L D
Sbjct: 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT-----FQLKVLQLPNCSLKV 116
+ PL + L L L + + +P+ ++ +P
Sbjct: 263 CSNLLTLPLDI----HRLTQLEKLDLRGCVNLSR---LPSLIAQLPANCIILVPPHLQAQ 315
Query: 117 IPSFLLHQ 124
+
Sbjct: 316 LDQHRPVA 323
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-24
Identities = 84/450 (18%), Positives = 147/450 (32%), Gaps = 80/450 (17%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVLSDNN 63
++ +DL N++ S L L+ + + + L+SL L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
F + +NLEVL L + L L K
Sbjct: 91 FL-QLETGAFNGLANLEVLTL---TQC------------NLDGAVLSGNFFK-------P 127
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
+L+ L L N + P N VL L+ N ++ + + L + +
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN------KVKSICEEDLLNFQGKH 181
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
L+ L + L D+++ + + + LDLS N F ++
Sbjct: 182 FTLLR---------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
Query: 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
+ A + + +N Y + N F G L + G+ D+
Sbjct: 233 FDAIAGTKIQSLILSNSYNMG----SSFGHTNFKDPDNFTFKG------LEASGVKTCDL 282
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS- 362
S + + L ++ ++F LE L L++N + I
Sbjct: 283 SKSKIF---------------------ALLKSVF---SHFTDLEQLTLAQNEI-NKIDDN 317
Query: 363 -FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKHSELRV 419
F L+ ++ L L +N L I S + + +L LDL N + Q L+
Sbjct: 318 AFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKE 375
Query: 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
L L N L+ +L L+ + L N
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 7e-21
Identities = 87/396 (21%), Positives = 137/396 (34%), Gaps = 62/396 (15%)
Query: 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+L++L L + + + L+ L + + NQ L +LE L L+
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111
Query: 61 DNNFQGEF-PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF----QLKVLQLPNCSLK 115
N G + ++LE+L L +N K F + VL L +K
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVL---RDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 116 VIPS---FLLHQYNLKFLDLSSNKLVGNFPTWLMQ-------NNTNLEVLRLSNNSFSGI 165
I + L LSS L WL NT++ L LS N F
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKEL 225
+ K D + I + L + NMG+ D F+G E +
Sbjct: 228 --MAKRFFDAIAGTKIQSLIL--SNSYNMGSSFGHTNFKDPDNFTFKGL------EASGV 277
Query: 226 FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHF 284
DLS++K L + + LE L +++N I + LT L L L N
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 285 TGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343
I + + + L VLD+S N + + +F L
Sbjct: 336 G-SIDSRMFENLDKLEVLDLSYNHIR-ALG--DQSFLGL--------------------- 370
Query: 344 RQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKN 377
L+ L L N+L S+ F L+S+ ++L N
Sbjct: 371 PNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 8e-18
Identities = 65/371 (17%), Positives = 121/371 (32%), Gaps = 46/371 (12%)
Query: 99 IPTFQLKVLQLPNCSLKVIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRL 157
+P + + L S+ + + +L+FL + + ++L +L+L
Sbjct: 28 LPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 158 SNNSFSGI-----LQLPKVKHDFLRHLDISNNNLIGT-LPQNMGTVLQKLMLIDISKNNF 211
N F + L L L ++ NL G L N L L ++ + NN
Sbjct: 87 DYNQFLQLETGAFNGLAN-----LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 212 EGNIPYSI-GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP--TY 268
+ P S M+ +LDL+ NK + E + T
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVK-----------------SICEEDLLNFQGKHFTL 184
Query: 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
+ L+ + + + + + LD+S N + F
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KRFFDAIAGTKI 241
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL 388
++ + N ++F G L S + L K+ + + ++
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKG-----LEASGVKTCDLSKSKIF-ALLKSVF 295
Query: 389 RS-TELLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446
T+L L L N+ +I + L L L N+L L KL +LDL
Sbjct: 296 SHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 447 SHNKLNGSIPS 457
S+N + ++
Sbjct: 355 SYNHI-RALGD 364
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 40/315 (12%)
Query: 2 KLKNLTELDLRENNL-EGQLPWRL-SDLTGLKVFDISSNQLSGNLP-SVIANLTSLEYLV 58
L NL L L + NL L LT L++ + N + P S N+ L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF---------QLKVLQL 109
L+ N + L N L S L+ E W+ + L L
Sbjct: 161 LTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219
Query: 110 PNCSLKVIPSF----LLHQYNLKFLDLSSNKLVGNFP-----------TWLMQNNTNLEV 154
K + + ++ L LS++ +G+ T+ + ++
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 155 LRLSNNSFSGI-----LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
LS + + L L ++ N I + N L L+ +++S+N
Sbjct: 280 CDLSKSKIFALLKSVFSHFTD-----LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN 333
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
+ +L +LDLS N L S G +L+ L + N +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 270 NLTQLRGLYLKNNHF 284
LT L+ ++L N +
Sbjct: 393 RLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 49/243 (20%), Positives = 79/243 (32%), Gaps = 48/243 (19%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTG 286
+DLS N + +L+ TS + L++L V + I T+ L+ L L L N F
Sbjct: 35 VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92
Query: 287 KIKAGLLNS-HGLVVLDISNNLL-SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344
+++ G N L VL ++ L + F L
Sbjct: 93 QLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPL---------------------T 129
Query: 345 QLEILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTL--LRSTELLTLDLRD 400
LE+L L +N + + FLN+ L L N + L + L L
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189
Query: 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460
+ +L E + + LDLS N S+ F
Sbjct: 190 ITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233
Query: 461 NVL 463
+ +
Sbjct: 234 DAI 236
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 16/225 (7%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANL---TSLEYL 57
++L ++T D+ E L + T + D+S N ++ + T ++ L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 58 VLSDN-NFQGEFPLSLLTNHSNLEV-------LRLLKVSNNLRFKTENWIPTF--QLKVL 107
+LS++ N F + + N ++ +S + F + + L+ L
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 108 QLPNCSLKVIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL 166
L + I +L L+LS N L G+ + + +N LEVL LS N +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
+ L+ L + N L ++P + L L I + N +
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L LDL N++ L + L LK + +NQL + LTSL+ + L
Sbjct: 345 NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
Query: 61 DNNFQ 65
N +
Sbjct: 404 TNPWD 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 8e-24
Identities = 86/419 (20%), Positives = 156/419 (37%), Gaps = 24/419 (5%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLS 60
++L LD+ N L+ + + L+ D+S N + NLT L +L LS
Sbjct: 98 FNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
F+ L + H + +L L+ IP + L SL +
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214
Query: 121 LLHQYNLKFLDLSSNKLVGN----FPTWLMQNNTNLEVLRLS----NNSFSGILQLPK-V 171
+ L L LS+ KL T+L + +L ++ ++ ++L +
Sbjct: 215 MSVN-ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273
Query: 172 KHDFLRHLDISNNNLIG----TLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL 227
+ +L+I N + T L+ LM+ + F + E+ +
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT-- 285
LS + + + +S +L+ ++N F +F L +L+ L L+ N
Sbjct: 334 KMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Query: 286 GKIKAGLLNSHGLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344
K+ N L LD+S N+L S + VL +S N L G++ +
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450
Query: 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
++++L L NR+ +L ++ L + N L R T L + L DN +
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 3e-21
Identities = 93/469 (19%), Positives = 169/469 (36%), Gaps = 49/469 (10%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
L L +N++ +S L+ L+V +S N++ V LEYL +S N
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
Q + + LR L +S N VL P C +
Sbjct: 113 Q-NISCCPMAS------LRHLDLSFN------------DFDVL--PVCKE------FGNL 145
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS-GILQLPKVKHDFLRHLDISN 183
L FL LS+ K + + + +L L + G + ++ + + HL
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 184 NNLIGTLPQNMGTVLQKLML--IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS----G 237
N+L L L L I ++ N + + + + LL+++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMN-----LTQLRGLYLKNNHFTGKIKAGL 292
+ +EYL++ I L L ++KN F +A
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 293 LNSHGLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
+ + +S ++ H+ C + S L ++N ++ + ++L+ L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 352 SENRL---FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT-LDLRDNKFFGRI 407
N L F N+SS+ L + N+L+ E + L+L N G +
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 408 PHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
+ ++VL L N + IP + LQ L+ L+++ N+L S+P
Sbjct: 445 FRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 49/351 (13%), Positives = 97/351 (27%), Gaps = 50/351 (14%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
L LS+N S +L ++ + L L +S N F ++ L L + +N
Sbjct: 57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347
I + S L LD+S N +P + + N +L
Sbjct: 115 ISCCPMAS--LRHLDLSFNDFD-VLP----------------------VCKEFGNLTKLT 149
Query: 348 ILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-----TELLTLDLRDNK 402
L LS + L ++ + + + +S I S T +L L N
Sbjct: 150 FLGLSAAKF--RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 403 FFGRIPHQINKHS---ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS---IP 456
F + +L + L Q + + +L+++ + +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 457 SCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQ 516
F ++Y + T S + + + +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 517 FVTKNRYEFYNGSSLNYMSG----------MDLSYNELTGEIPSEIGELPK 557
F N + ++ + N T + L +
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ LDL N + +P ++ L L+ +++SNQL V LTSL+Y+ L DN +
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 65 Q 65
Sbjct: 510 D 510
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 4e-21
Identities = 92/498 (18%), Positives = 155/498 (31%), Gaps = 97/498 (19%)
Query: 4 KNLTELDLRENNL-EGQLPWRLSDLTGLKVFDISSNQLS----GNLPSVIANLTSLEYLV 58
++ LD++ L + + L L +V + L+ ++ S + +L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 59 LSDNNFQ--GEFPLS--LLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL 114
L N G + L T ++ L L N L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSL---QNC-----------------CLTGAGC 102
Query: 115 KVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS--GILQL 168
V+ S L L+ L LS N L + L+ LE L+L S S L
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
Query: 169 PKV--KHDFLRHLDISNNNLIGTLPQNMGTVLQ----KLMLIDISKNNFEGNIPYSIGEM 222
V + L +SNN++ + + L+ +L + + + + +
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222
Query: 223 ----KELFLLDLSRNKFSGD----LSATSVNGCASLEYLDVSENNF----YGHIFPTYMN 270
L L L NK L ++ + L L + E G +
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 271 LTQLRGLYLKNNHFTGK----IKAGLLNSH-GLVVLDISNNLLSGHIPCWIGNFSYLDVL 325
L+ L L N + + LL L L + + C
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS--------CSFTAACCSHFS 334
Query: 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL------NLSSIMHLYLQKNAL 379
+ + R L L +S NRL + L S + L+L +
Sbjct: 335 SVLAQN------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382
Query: 380 SGQ----IPSTLLRSTELLTLDLRDNKF----FGRIPHQI-NKHSELRVLLLRGNYLQGE 430
S + +TLL + L LDL +N ++ + L L+L Y E
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442
Query: 431 IPIALCQLQK----LRIL 444
+ L L+K LR++
Sbjct: 443 MEDRLQALEKDKPSLRVI 460
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 2e-18
Identities = 79/472 (16%), Positives = 132/472 (27%), Gaps = 83/472 (17%)
Query: 52 TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPN 111
++ L + LL +V+RL + L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRL---DDC-----------------GLTE 42
Query: 112 CSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS--GI 165
K I S L L L+L SN+L V L + ++ L L N + G
Sbjct: 43 ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102
Query: 166 LQLPKV--KHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
L L+ L +S+N L + + L+KL L +
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL---EYCSLSAASC 159
Query: 217 YSIGEM----KELFLLDLSRNKFSGD----LSATSVNGCASLEYLDVSENNF----YGHI 264
+ + + L +S N + L + LE L + +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219
Query: 265 FPTYMNLTQLRGLYLKNNHFTGK-----IKAGLLNSHGLVVLDISNNLLS----GHIPCW 315
+ LR L L +N L S L L I ++ G +
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279
Query: 316 IGNFSYLDVLLMSKNHLEGN-----IPVQINNFRQLEILYLSENRL----FGSIASFL-N 365
+ L L ++ N L + QLE L++ +S L
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRS-----TELLTLDLRDNKF----FGRIPHQINKHSE 416
++ L + N L L + + L L L D + + +
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399
Query: 417 LRVLLLRGNYLQGEIPIALCQLQK-----LRILDLSHNKLNGSIPSCFANVL 463
LR L L N L + L + + L L L + + +
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 9e-14
Identities = 60/353 (16%), Positives = 111/353 (31%), Gaps = 68/353 (19%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDL-----TGLKVFDISSNQLS----GNLPSVIANLT 52
L L EL L +N L L + L+ + LS L SV+
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170
Query: 53 SLEYLVLSDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108
+ L +S+N+ L + LE L+L +
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL---ESC-----------------G 210
Query: 109 LPNCSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS- 163
+ + + + + + + +L+ L L SNKL + L+ ++ L L + +
Sbjct: 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270
Query: 164 -GILQLPKV--KHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLIDISKNNFEG 213
G L +V + L+ L ++ N L + G L+ L + +F
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL---WVKSCSFTA 327
Query: 214 NIPYSIGEM----KELFLLDLSRNKFSGD----LSATSVNGCASLEYLDVSENNF----Y 261
+ + L L +S N+ L + L L +++ +
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387
Query: 262 GHIFPTYMNLTQLRGLYLKNNHFTGK----IKAGLLNSHG-LVVLDISNNLLS 309
+ T + LR L L NN + + L L + + S
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 60/384 (15%), Positives = 114/384 (29%), Gaps = 84/384 (21%)
Query: 149 NTNLEVLRLSNNSFS--GILQLPKV---------------------------KHDFLRHL 179
+ +++ L + S +L + + L L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 180 DISNNNL-------IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM----KELFLL 228
++ +N L + Q +QKL L G + L L
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL---QNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 229 DLSRNKFSGD----LSATSVNGCASLEYLDVSENNF----YGHIFPTYMNLTQLRGLYLK 280
LS N L ++ LE L + + + + L +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 281 NNHFTGK----IKAGLLNSH-GLVVLDISNNLLS----GHIPCWIGNFSYLDVLLMSKNH 331
NN + GL +S L L + + ++ + + + + L L + N
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 332 LEGN-----IPVQINNFRQLEILYLSENRL----FGSIASFL-NLSSIMHLYLQKNALSG 381
L P ++ +L L++ E + G + L S+ L L N L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 382 QIPSTLLRS-----TELLTLDLRDNKF----FGRIPHQINKHSELRVLLLRGNYLQGEIP 432
+ L + +L +L ++ F + ++ L L + N L+
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 433 IALCQL-----QKLRILDLSHNKL 451
LCQ LR+L L+ +
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDV 382
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 54/235 (22%), Positives = 80/235 (34%), Gaps = 48/235 (20%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSD-----LTGLKVFDISSNQLS----GNLPSVIANL 51
+L EL L N L L + L+ I ++ G+L V+
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283
Query: 52 TSLEYLVLSDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107
SL+ L L+ N E +LL LE L + S +
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV--KSCSFTAA------------- 328
Query: 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS 163
S L L L +S+N+L V L Q + L VL L++ S
Sbjct: 329 -----CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383
Query: 164 --GILQLPKV--KHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLIDIS 207
L + LR LD+SNN L + + G +L++L+L DI
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 37/180 (20%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDL-----TGLKVFDISSNQLSG----NLPSVIANL 51
++L EL L N L + L + L+ + S + + SV+A
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 52 TSLEYLVLSDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107
L L +S+N + L S L VL L ++
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL---ADC----------------- 380
Query: 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS 163
+ + S + + LL ++L+ LDLS+N L + + Q LE L L + +S
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 8e-21
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L++L L L N++ + L L ++ N+L+ L+ L+ L L +N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ----LKVLQLPNCSLKVIP 118
+ P +L L L + L + +E F+ L+ L L C+L+ IP
Sbjct: 147 PIE-SIPSYAFNRIPSLRRLDLGE-LKRLSYISEG---AFEGLSNLRYLNLAMCNLREIP 201
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKH 173
+ L LDLS N L Q +L+ L + + I L
Sbjct: 202 NL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS--- 256
Query: 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
L +++++NNL LP ++ T L L I + N +
Sbjct: 257 --LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 3e-18
Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 31/257 (12%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
N L+L EN ++ L L++ +S N + L +L L L DN
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
P S L+ L L NN ++ IPS+ ++
Sbjct: 125 T-TIPNGAFVYLSKLKELWL---RNN----------------------PIESIPSYAFNR 158
Query: 125 -YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
+L+ LDL K + + +NL L L+ + I L + L LD+S
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK--LDELDLSG 216
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
N+ + + L L + + ++ + + ++ L ++L+ N + L
Sbjct: 217 NH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274
Query: 244 VNGCASLEYLDVSENNF 260
LE + + N +
Sbjct: 275 FTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 7e-17
Identities = 60/285 (21%), Positives = 102/285 (35%), Gaps = 45/285 (15%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
Q + +L+ +P + N + L+L N++ ++ +LE+L+LS N
Sbjct: 44 QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100
Query: 163 SGI-----LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY 217
I L L L++ +N + T+P L KL + + N E +IP
Sbjct: 101 RTIEIGAFNGLAN-----LNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153
Query: 218 SI-GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
+ L LDL K +S + G ++L YL+++ N P L +L
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDE 211
Query: 277 LYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
L L NH + I+ G L L + + + I F L
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIE--RNAFDNL------------- 254
Query: 336 IPVQINNFRQLEILYLSENRL-FGSIASFLNLSSIMHLYLQKNAL 379
+ L + L+ N L F L + ++L N
Sbjct: 255 --------QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 9e-17
Identities = 52/230 (22%), Positives = 74/230 (32%), Gaps = 17/230 (7%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTG 286
L+L N+ + S LE L +S N+ I + L L L L +N T
Sbjct: 69 LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 287 KIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL----LMSKNHLEGNIPVQI- 340
I G L L + NN + IP F+ + L L L I
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLS-YISEGAF 181
Query: 341 NNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLR 399
L L L+ L I + L + L L N LS I + L L +
Sbjct: 182 EGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239
Query: 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
++ + + L + L N L L L + L HN
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 9e-16
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 10/209 (4%)
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 306
+ L++ EN ++ +L L L L NH I+ G N L L++ +N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIA--SF 363
L+ S L L + N +E +IP N L L L E + I+ +F
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH-SELRVLLL 422
LS++ +L L L +IP L +L LDL N I + L+ L +
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWM 238
Query: 423 RGNYLQGEIPIALCQLQKLRILDLSHNKL 451
+ +Q A LQ L ++L+HN L
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 13/194 (6%)
Query: 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
Q + + ++ G+ S +L++ N + + +L++L +S+NH+
Sbjct: 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 333 EGNIPVQI-NNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLR 389
I + N L L L +NRL +I + F+ LS + L+L+ N + IPS
Sbjct: 101 R-TIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157
Query: 390 S-TELLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447
L LDL + K I S LR L L L+ EIP L L KL LDLS
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215
Query: 448 HNKLNGSIPSCFAN 461
N L+ P F
Sbjct: 216 GNHLSAIRPGSFQG 229
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 9e-11
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
S+ + L +P I + +L + +N ++ + R LEIL LS N
Sbjct: 42 SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 355 RLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI- 411
+ +I +F L+++ L L N L+ + ++L L LR+N IP
Sbjct: 99 HI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAF 156
Query: 412 NKHSELRVL-LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
N+ LR L L L A L LR L+L+ L IP+
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L ELDL N+L P L L+ + +Q+ + NL SL + L+
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL 84
NN P L T +LE + L
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHL 286
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NL L+L NL ++P L+ L L D+S N LS P L L+ L +
Sbjct: 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
+ Q + N +L + L ++N L +L
Sbjct: 241 SQIQ-VIERNAFDNLQSLVEINL---AHN------------NLTLLP---------HDLF 275
Query: 122 LHQYNLKFLDLSSN 135
++L+ + L N
Sbjct: 276 TPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L +L + ++ ++ +L L +++ N L+ + L LE + L N
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Query: 63 NFQ 65
+
Sbjct: 290 PWN 292
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-20
Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 22/218 (10%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L L L N++ + L L ++ N L+ L+ L L L +N
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ----LKVLQLPNCSLKVIP 118
+ P +L L L + L + +E F+ LK L L C++K +P
Sbjct: 158 PIE-SIPSYAFNRVPSLMRLDLGE-LKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMP 212
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKH 173
+ L+ L++S N ++L+ L + N+ S I L
Sbjct: 213 NL-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS--- 267
Query: 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
L L++++NNL +LP ++ T L+ L+ + + N +
Sbjct: 268 --LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 8e-18
Identities = 52/257 (20%), Positives = 83/257 (32%), Gaps = 31/257 (12%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
N L+L ENN++ L L+V + N + L SL L L DN
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
P S L L L NN ++ IPS+ ++
Sbjct: 136 T-VIPSGAFEYLSKLRELWL---RNN----------------------PIESIPSYAFNR 169
Query: 125 -YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
+L LDL K + + NL+ L L + + L + L L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG--LEELEMSG 227
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
N+ + L L + + + + + L L+L+ N S L
Sbjct: 228 NH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDL 285
Query: 244 VNGCASLEYLDVSENNF 260
L L + N +
Sbjct: 286 FTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 49/229 (21%), Positives = 77/229 (33%), Gaps = 15/229 (6%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTG 286
L+L N + A + LE L + N+ I + L L L L +N T
Sbjct: 80 LNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT- 136
Query: 287 KIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL----LMSKNHLEGNIPVQI- 340
I +G L L + NN + IP F+ + L L LE I
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIP--SYAFNRVPSLMRLDLGELKKLE-YISEGAF 192
Query: 341 NNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
L+ L L + + + L + L + N P + + L L + +
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
++ + + + L L L N L L+ L L L HN
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 248 ASLEYLDVSENNF---YGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDI 303
++ YL++ ENN F +L L L L N +I+ G N L L++
Sbjct: 75 SNTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIA- 361
+N L+ S L L + N +E +IP N L L L E + I+
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 362 -SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420
+F L ++ +L L + +P L L L++ N F P + S L+ L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247
Query: 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
+ + + A L L L+L+HN L
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 13/194 (6%)
Query: 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332
Q + + ++ G+ L++ N + + +L+VL + +N +
Sbjct: 55 QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 333 EGNIPVQI-NNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLR 389
I V N L L L +N L I S F LS + L+L+ N + IPS
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168
Query: 390 S-TELLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLS 447
L+ LDL + K I L+ L L ++ ++P L L L L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMS 226
Query: 448 HNKLNGSIPSCFAN 461
N P F
Sbjct: 227 GNHFPEIRPGSFHG 240
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
S+ + + LS +P I S L + +N+++ + LE+L L N
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 355 RLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI 411
+ I +F L+S+ L L N L+ IPS ++L L LR+N IP
Sbjct: 110 SI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYA 166
Query: 412 -NKHSELRVL-LLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
N+ L L L L+ A L L+ L+L + +P+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L EL++ N+ P L+ LK + ++Q+S + L SL L L+
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL 84
NN P L T L L L
Sbjct: 276 NNLS-SLPHDLFTPLRYLVELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L +L +L + + + L L +++ N LS + L L L L N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Query: 63 NFQ 65
+
Sbjct: 301 PWN 303
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 57/290 (19%), Positives = 97/290 (33%), Gaps = 28/290 (9%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
LD+ NN I + L+ L + + N P + + +L L LS+N+
Sbjct: 54 TALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFT-GKIKAGL 292
L +L+ L V EN + L Q+ + L N I+ G
Sbjct: 112 ---LKELPEKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 293 L-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILY 350
L + I++ ++ IP G L L + N + + L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIP--QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLG 222
Query: 351 LSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF----- 403
LS N + ++ S N + L+L N L ++P L + + L +N
Sbjct: 223 LSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 404 -FGRIPHQINKHSELRVLLLRGNYLQGEI--PIALCQLQKLRILDLSHNK 450
P K + + L N +Q P + + L + K
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 7e-20
Identities = 54/296 (18%), Positives = 97/296 (32%), Gaps = 35/296 (11%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ LDL+ N + +L L + +N++S P A L LE L LS N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLKVI---P 118
+ E P + L+ LR+ N + + + Q+ V++L LK
Sbjct: 112 LK-ELPEKMP---KTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKH 173
L ++ ++ + P L +L L L N + + L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNN--- 217
Query: 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
L L +S N+ I + L + ++ N +P + + K + ++ L N
Sbjct: 218 --LAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 234 KFS-----GDLSATSVNGCASLEYLDVSENNFYGHIFP--TYMNLTQLRGLYLKNN 282
S AS + + N T+ + + L N
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-19
Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 25/288 (8%)
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
LR + S+ L +P+++ L D+ N +K L L L NK
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
S +S + LE L +S+N P M L+ L + N T K++ + N
Sbjct: 88 IS-KISPGAFAPLVKLERLYLSKNQL--KELPEKM-PKTLQELRVHENEIT-KVRKSVFN 142
Query: 295 S-HGLVVLDISNNLL-SGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
+ ++V+++ N L S I L + ++ ++ + L L+L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHL 199
Query: 352 SENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPH 409
N++ + AS L+++ L L N++S +L + L L L +NK ++P
Sbjct: 200 DGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPG 257
Query: 410 QINKHSELRVLLLRGNYLQG------EIPIALCQLQKLRILDLSHNKL 451
+ H ++V+ L N + P + + L N +
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 26/246 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L L L +N L+ +LP ++ L+ + N+++ SV L + + L
Sbjct: 98 PLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 62 NNFQ-GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF---QLKVLQLPNCSLKVI 117
N + L +R+ N+ IP L L L + +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRI--ADTNITT-----IPQGLPPSLTELHLDGNKITKV 207
Query: 118 PSFLL-HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-LQLPKVKHDF 175
+ L NL L LS N + + N +L L L+NN + L K+
Sbjct: 208 DAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-- 264
Query: 176 LRHLDISNNNL--IGT---LPQNMGTVLQKLMLIDISKNNFEGNI--PYSIGEMKELFLL 228
++ + + NNN+ IG+ P T + + N + P + + +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324
Query: 229 DLSRNK 234
L K
Sbjct: 325 QLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 9/194 (4%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
L L+NN T N L L + NN +S P L+ L +SKN
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 332 LEGNIPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNAL-SGQIPSTLLR 389
L+ + + L+ L + EN + + F L+ ++ + L N L S I + +
Sbjct: 112 LKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 390 S-TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
+L + + D IP + L L L GN + +L L L L LS
Sbjct: 169 GMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 449 NKLNGSIPSCFANV 462
N ++ AN
Sbjct: 226 NSISAVDNGSLANT 239
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-20
Identities = 73/402 (18%), Positives = 135/402 (33%), Gaps = 46/402 (11%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L LT LD +++ + LTGL +SN ++ L ++ T+L YL
Sbjct: 40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N ++ LT L L N + + L L +L I +
Sbjct: 95 NKLT-NLDVTPLTK------LTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEID--V 144
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
H L LD NK + + T L L S N + +L ++ L L+
Sbjct: 145 SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNC 198
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
NN+ L N L L D S N + + +L D S N L+
Sbjct: 199 DTNNIT-KLDLNQNIQLTFL---DCSSNKLTE---IDVTPLTQLTYFDCSVNP----LTE 247
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVL 301
V+ + L L + + + TQL + ++ L +L
Sbjct: 248 LDVSTLSKLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKELDVTHNTQ--LYLL 302
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361
D ++ + + L L ++ L + +++ +L+ L + +
Sbjct: 303 DCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI-QDFS 355
Query: 362 SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
S + ++ + + + TL + LT+ + +
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLL 395
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-19
Identities = 81/455 (17%), Positives = 136/455 (29%), Gaps = 75/455 (16%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
N ++ L L D ++ ++ ++ I LT L L+ + NN
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
LS TN L L +N +L L + +
Sbjct: 76 IT-TLDLSQNTN------LTYLACDSN------------KLTNLDVTPLT---------- 106
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
L +L+ +NKL + N L L + N+ + ++ + L LD
Sbjct: 107 --KLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHL 157
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
N I L T L L D S N + + K L L+ N ++
Sbjct: 158 NKKITKLDVTPQTQLTTL---DCSFNKITE---LDVSQNKLLNRLNCDTNN----ITKLD 207
Query: 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
+N L +LD S N LTQL N T + L L L
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPLTELDVSTLSK---LTTLHC 261
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASF 363
L I + + + L + + + QL +L + +
Sbjct: 262 IQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI--TELDL 314
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423
+++LYL L+ ++ + T+L +L + + K L
Sbjct: 315 SQNPKLVYLYLNNTELT-ELDVSHN--TKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEA 369
Query: 424 GNYLQGEIPIALCQLQKL------RILDLSHNKLN 452
+P L +LD N +N
Sbjct: 370 EGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 56/321 (17%), Positives = 107/321 (33%), Gaps = 46/321 (14%)
Query: 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL-----IGTLPQ---------NM 194
+ N + + + + L LD N+++ I L N+
Sbjct: 17 DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI 76
Query: 195 GTV----LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASL 250
T+ L + N N+ + + +L L+ NK L+ V+ L
Sbjct: 77 TTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK----LTKLDVSQNPLL 129
Query: 251 EYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 310
YL+ + N + TQL L N K+ L LD S N ++
Sbjct: 130 TYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFNKIT- 183
Query: 311 HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIM 370
+ + L+ L N++ + +N QL L S N+L + L+ +
Sbjct: 184 ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL--TEIDVTPLTQLT 236
Query: 371 HLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430
+ N L+ STL ++L TL +I+ +++ + +
Sbjct: 237 YFDCSVNPLTELDVSTL---SKLTTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKI 288
Query: 431 IPIALCQLQKLRILDLSHNKL 451
+ + +L +LD +
Sbjct: 289 KELDVTHNTQLYLLDCQAAGI 309
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 46/248 (18%), Positives = 73/248 (29%), Gaps = 48/248 (19%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L LT D N L +L +S L+ L L + + + T L Y
Sbjct: 231 PLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEG 284
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
E ++ T L LL + L L
Sbjct: 285 CRKIKELDVTHNTQ------LYLLDCQAA------------GITELDLSQNP-------- 318
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
L +L L++ +L + +NT L+ L N + K+ L +
Sbjct: 319 ----KLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFE 368
Query: 182 SNNNLI----GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
+ I TL N T+ L+D N NI G + + ++ S
Sbjct: 369 AEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLST 426
Query: 238 DLSATSVN 245
D A +
Sbjct: 427 DNPAVTYT 434
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 27/289 (9%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
LD+ NN+ I L ++ LQ L + + N + +++L L +S+N
Sbjct: 56 TTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH- 113
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFT-GKIKAGLL 293
L N +SL L + +N + + L + + + N + G
Sbjct: 114 ---LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 294 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLS 352
+ L L IS L+ IP L+ L + N ++ I ++ + +L L L
Sbjct: 170 DGLKLNYLRISEAKLT-GIP--KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225
Query: 353 ENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF------- 403
N++ I S L ++ L+L N LS ++P+ L L + L N
Sbjct: 226 HNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283
Query: 404 FGRIPHQINKHSELRVLLLRGNYLQGEI--PIALCQLQKLRILDLSHNK 450
F + + + + L N + P + + + K
Sbjct: 284 FCPVGFGVKRAY-YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 55/296 (18%), Positives = 104/296 (35%), Gaps = 36/296 (12%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ T LDL+ N++ L L + +N++S + L L+ L +S N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLK--VIPS 119
E P +L S+L LR+ +N + + + +++ L+
Sbjct: 114 LV-EIPPNLP---SSLVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNN-TNLEVLRLSNNSFSGI-----LQLPKVKH 173
L +L +S KL T + ++ L L L +N I L+ K
Sbjct: 167 GAFDGLKLNYLRISEAKL-----TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK--- 218
Query: 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
L L + +N I + + L L + + N +P + ++K L ++ L N
Sbjct: 219 --LYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Query: 234 KFS-----GDLSATSVNGCASLEYLDVSENNF-YGHIFP-TYMNLTQLRGLYLKNN 282
+ A + + N Y + P T+ +T + N
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 58/309 (18%), Positives = 115/309 (37%), Gaps = 26/309 (8%)
Query: 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
+ L + + P H LR + S+ L +P+ + L D+ N+
Sbjct: 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEISPDTTLL---DLQNNDISE 68
Query: 214 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
++ L+ L L NK S + + + L+ L +S+N+ P + +
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL--VEIPPNL-PSS 124
Query: 274 LRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLL-SGHIPCWIGNFSYLDVLLMSKNH 331
L L + +N K+ G+ + + +++ N L + + L+ L +S+
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 332 LEGNIPVQINNFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
L G + + L L+L N++ +I L S + L L N + +L
Sbjct: 184 LTG---IPKDLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 390 STELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP-------IALCQLQKLR 442
L L L +NK R+P + L+V+ L N + ++ +
Sbjct: 240 LPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297
Query: 443 ILDLSHNKL 451
+ L +N +
Sbjct: 298 GISLFNNPV 306
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 20/218 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL-SGNLPSVIANLTSLEYLVLSD 61
+L EL + +N + S L + ++ N L + + L YL +S+
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNL--RFKTENWIPTFQLKVLQLPNCSLKVIPS 119
P L L L L +N + E+ + +L L L + +++I +
Sbjct: 182 AKLT-GIPKDLP---ETLNELHL---DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 120 FLL-HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI------LQLPKVK 172
L L+ L L +NKL P L + L+V+ L N+ + + VK
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292
Query: 173 HDFLRHLDISNNNL-IGTLPQNMGTVLQKLMLIDISKN 209
+ + + NN + + + + I
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 10/167 (5%)
Query: 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLF 357
L V+ S+ L +P I +L + N + + L L L N++
Sbjct: 35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI- 90
Query: 358 GSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
I F L + LY+ KN L +IP L S L+ L + DN+ +
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLR 147
Query: 416 ELRVLLLRGNYLQ-GEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ + + GN L+ KL L +S KL G
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 28/140 (20%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ L L L N + LS L L+ + +N+LS +P+ + +L L+ + L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273
Query: 62 NNFQ----GEF-PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKV 116
NN +F P+ + + L NN + ++ + +
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISL---FNN------------PVPYWEVQPATFRC 318
Query: 117 IPSFLLHQYNLKFLDLSSNK 136
+ + + + K
Sbjct: 319 VT-------DRLAIQFGNYK 331
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 33/240 (13%)
Query: 2 KLKNLTELDLRENNLEGQ--LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
KL LT+L L N L + T LK D+S N + + S L LE+L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS 119
+N + S+ + NL L + S+ +V +
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDI---SHT----------------------HTRVAFN 143
Query: 120 FLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178
+ + +L+ L ++ N NF + NL L LS + L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI--GEMKELFLLDLSRNKFS 236
L++S+NN +L L L ++D S N+ L L+L++N F+
Sbjct: 204 LNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 60/286 (20%), Positives = 96/286 (33%), Gaps = 39/286 (13%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ TE+ L +P + + ++ SN+L V LT L L LS N
Sbjct: 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG- 63
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
L + F T + LK L L + + S L
Sbjct: 64 -----------------LSFKGCCSQSDFGTTS------LKYLDLSFNGVITMSSNFLGL 100
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFLRHL 179
L+ LD + L + + NL L +S+ L L L
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVL 155
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
++ N+ ++ T L+ L +D+S+ E P + + L +L++S N F L
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SL 214
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNL-TQLRGLYLKNNHF 284
SL+ LD S N+ + + L L L N F
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 48/241 (19%), Positives = 71/241 (29%), Gaps = 31/241 (12%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP--TYMNLTQLRGLYLKNNHFT 285
L+L NK L + L L +S N + T L+ L L N
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345
+ + L L LD ++ L F L R
Sbjct: 92 -TMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSL---------------------RN 127
Query: 346 LEILYLSENRL-FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKF 403
L L +S F LSS+ L + N+ + L LDL +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 404 FGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462
++ N S L+VL + N L L++LD S N + S +
Sbjct: 188 -EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 463 L 463
Sbjct: 247 P 247
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
+ L+ L LD + +NL+ + + L L DIS + L+SLE L +
Sbjct: 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENW-IPTFQLKVLQLPNCSLKVIP 118
+ N+FQ F + T NL L L L + L+VL + + + +
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 119 SFLL-HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS 163
+F +L+ LD S N ++ + L ++L L L+ N F+
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 28/184 (15%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 330
+ L L++N + G+ + L L +S+N LS C +
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGT-------- 77
Query: 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
L+ L LS N + ++FL L + HL Q + L ++ S
Sbjct: 78 -------------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 391 -TELLTLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEI-PIALCQLQKLRILDLS 447
L+ LD+ + I S L VL + GN Q P +L+ L LDLS
Sbjct: 125 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 448 HNKL 451
+L
Sbjct: 184 QCQL 187
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 44/214 (20%), Positives = 72/214 (33%), Gaps = 16/214 (7%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ L N + L + + SN L+ + L LE L LSDN
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENW-IPTFQLKVLQLPNCSLKVIPSFLL- 122
+ L L L L+ L+ L L + +L+ +P
Sbjct: 93 LRSVDPATFHGLGRLHTLHL--DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFLR 177
NL L L N++ + P + +L+ L L N + + L + L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR-----LM 204
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
L + NNL LP L+ L + ++ N +
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 25/240 (10%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ + L+ +P + + + N++S + +L L L N
Sbjct: 11 EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKT---ENWIPTFQLKVLQLPNCSLKVIPSF 120
+ T + LE L L S+N + ++ + +L L L C L+ +
Sbjct: 68 LA-RIDAAAFTGLALLEQLDL---SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ-----LPKVKHD 174
L L++L L N L P ++ NL L L N S + + L
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS---- 178
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI-GEMKELFLLDLSRN 233
L L + N + + + L +LM + + NN +P ++ L L L+ N
Sbjct: 179 -LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-14
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 8/185 (4%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
+ ++L N + A L +L + +N+L+ + L+ L +S N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 332 LEGNIPVQI-NNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLL 388
++ + +L L+L L + F L+++ +LYLQ NAL +P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 389 RS-TELLTLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446
R L L L N+ +P + + L LLL N + P A L +L L L
Sbjct: 150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 447 SHNKL 451
N L
Sbjct: 209 FANNL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 8e-14
Identities = 40/163 (24%), Positives = 57/163 (34%), Gaps = 7/163 (4%)
Query: 3 LKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L +LDL +N + L L + L P + L +L+YL L D
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENW-IPTFQLKVLQLPNCSLKVIPSF 120
N Q P + NL L L N + E L L L + +
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFL--HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
L L L +N L PT + L+ LRL++N +
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-13
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 8/208 (3%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
+ + + N I +P + L ++ + N + + L LDLS N
Sbjct: 34 SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTGKIKAGLLN 294
+ + +G L L + + P + L L+ LYL++N +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150
Query: 295 S-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353
L L + N +S LD LL+ +N + P + +L LYL
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 354 NRLFGSIAS--FLNLSSIMHLYLQKNAL 379
N L ++ + L ++ +L L N
Sbjct: 211 NNL-SALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 40/170 (23%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENR 355
+ + N +S L +L + N L I LE L LS+N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91
Query: 356 LFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI- 411
S+ F L + L+L + L ++ L R L L L+DN +P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTF 149
Query: 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L L L GN + A L L L L N++ P F +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NLT L L N + L L + N+++ P +L L L L
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL 84
NN P L L+ LRL
Sbjct: 211 NNLS-ALPTEALAPLRALQYLRL 232
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 2 KLKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L L L++N L+ LP DL L + N++S L SL+ L+L
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR 92
N + L L L +NNL
Sbjct: 186 QNRVA-HVHPHAFRDLGRLMTLYL--FANNLS 214
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 33/267 (12%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ NL L L N + S L L+ D+S N LS S L+SL +L L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--TF----QLKVLQLPNCSLK 115
N ++ SL ++ + L++LR+ N F I F L+ L++ L+
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVG---NMDTFTK---IQRKDFAGLTFLEELEIDASDLQ 187
Query: 116 VIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHD 174
L N+ L L + + + +++E L L +
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT-------------- 232
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
LD + + + T N + I+ + + + ++ L L+ SRN+
Sbjct: 233 ---DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288
Query: 235 FSGDLSATSVNGCASLEYLDVSENNFY 261
+ + SL+ + + N +
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 33/298 (11%)
Query: 113 SLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQ 167
SL IPS L +K LDLS+N++ +Q NL+ L L++N + I
Sbjct: 42 SLNSIPSGLTE--AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI-GEMKELF 226
L L HLD+S N L L + L L +++ N ++ S+ + +L
Sbjct: 99 LGS-----LEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 227 LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG 286
+L + + G LE L++ ++ + + ++ + L L
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211
Query: 287 KIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345
+ + + + L++ + L + L +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLIKKFT 255
Query: 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
+ +++ LF + +S ++ L +N L R T L + L N +
Sbjct: 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 19/308 (6%)
Query: 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
+ + S + D S+ +L ++P + ++ L D+S N
Sbjct: 14 IISLSKEESSNQASLSCDRNGICKGSSGSL-NSIPSGLTEAVKSL---DLSNNRITYISN 69
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLR 275
+ L L L+ N + + S + SLE+LD+S N ++ + L+ L
Sbjct: 70 SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLT 127
Query: 276 GLYLKNNHFTGKIKAGLLNSHG-LVVLDISNNLLSGHIPC-WIGNFSYLDVLLMSKNHLE 333
L L N + + L + L +L + N I ++L+ L + + L+
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 334 GNIPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSG----QIPS--- 385
P + + + + L L + SS+ L L+ L ++ +
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 386 -TLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL 444
+L++ + + D F ++ +N+ S L L N L+ +L L+ +
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
Query: 445 DLSHNKLN 452
L N +
Sbjct: 307 WLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 37/288 (12%)
Query: 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87
+K D+S+N+++ S + +L+ LVL+ N ++ +LE L L
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL--S 108
Query: 88 SNNLRFKTENW-IPTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNFPTW 144
N L + +W P L L L K + S H L+ L + +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 145 LMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQ 199
T LE L + + + + HL + L + V
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQN-----VSHLILHMKQ-HILLLEIFVDVTS 222
Query: 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259
+ +++ + + + + L+ + + +++ +
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKF-----------------TFRNVKITDES 265
Query: 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 306
+ + ++ L L N + G+ + L + + N
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 22/244 (9%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFT 285
LDLS N+ + +S + + C +L+ L ++ N + +L L L L N+ +
Sbjct: 57 LDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 286 GKIKAGLLNSHG-LVVLDISNNLLSGHIPC-WIGNFSYLDVLLMSKNHLEGNIPVQI-NN 342
+ + L L++ N + + L +L + I +
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 343 FRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
LE L + + L S S ++ ++ HL L + + ++ + L+LRD
Sbjct: 173 LTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 401 NKFFGRIPHQI--------NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
++ K R + + L ++ L Q+ L L+ S N+L
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290
Query: 453 GSIP 456
S+P
Sbjct: 291 -SVP 293
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 8/172 (4%)
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENR 355
+ LD+SNN ++ + L L+++ N + I ++ LE L LS N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111
Query: 356 LFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI- 411
L +++S F LSS+ L L N ++L T+L L + + F +I +
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
+ L L + + LQ P +L +Q + L L + + F +V
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT 221
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 8e-17
Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 36/241 (14%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ +EL L NL LP L + V +I+ N L +LP + A+L L+ D
Sbjct: 57 LINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACD 109
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF--QLKVLQLPNCSLKVIPS 119
N P ++L+ L + +N L +P L+ + N L ++P
Sbjct: 110 NRLS-TLPELP----ASLKHLDVD--NNQLT-----MLPELPALLEYINADNNQLTMLPE 157
Query: 120 FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS----GILQLPKVKHDF 175
+L+ L + +N+L P +LE L +S N ++ + +
Sbjct: 158 LPT---SLEVLSVRNNQL-TFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSE-ET 208
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
N I +P+N+ + L I + N I S+ + R F
Sbjct: 209 EIFFRCRENR-ITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
Query: 236 S 236
S
Sbjct: 267 S 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 1e-15
Identities = 70/412 (16%), Positives = 112/412 (27%), Gaps = 81/412 (19%)
Query: 34 DISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRF 93
+ N +SG + E L N E + LLK
Sbjct: 16 NSFYNTISGTYADYFSAWDKWEKQALPGEN--------------RNEAVSLLK------- 54
Query: 94 KTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE 153
E I Q LQL +L +P L + L+++ N L+ + P +LE
Sbjct: 55 --ECLIN--QFSELQLNRLNLSSLPDNLPP--QITVLEITQNALI-SLPELP----ASLE 103
Query: 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
L +N S + +LP L+HLD+ NN L LP+ L+ + + N
Sbjct: 104 YLDACDNRLSTLPELPA----SLKHLDVDNNQLT-MLPELPAL-LEYI---NADNNQLT- 153
Query: 214 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
+P SLE L V N P
Sbjct: 154 MLPELPT----------------------------SLEVLSVRNNQL--TFLPE--LPES 181
Query: 274 LRGLYLKNNHFTG---KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKN 330
L L + N + + N ++ HIP I + +++ N
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240
Query: 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
L I ++ Y F N S + +
Sbjct: 241 PLSSRIRESLSQQTAQP-DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299
Query: 391 TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLR 442
+ N F +++ R + L +LR
Sbjct: 300 WHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQVA-AWLEKLSASAELR 349
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 8e-15
Identities = 58/330 (17%), Positives = 106/330 (32%), Gaps = 42/330 (12%)
Query: 194 MGTVLQKLMLIDISKNNFEGNIPYSIGEM-------KELFLLDLSRNKFSGDLSATSVNG 246
M +L +S+N+F I + + ++ L +RN+ L +N
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59
Query: 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306
L ++ N P + Q+ L + N + + L LD +N
Sbjct: 60 --QFSELQLNRLNL--SSLPDNL-PPQITVLEITQNALI-SLPELPAS---LEYLDACDN 110
Query: 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNL 366
LS +P + +LDV N L +P LE + N+L +L
Sbjct: 111 RLS-TLPELPASLKHLDV---DNNQLT-MLPELPAL---LEYINADNNQLTMLPELPTSL 162
Query: 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLL----L 422
L ++ N L+ +P L LD+ N +P ++
Sbjct: 163 EV---LSVRNNQLT-FLPELP---ESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRC 214
Query: 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQ 482
R N + IP + L + L N L+ S + + D +G +
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQP---DYHGPRIYFSMS 269
Query: 483 FGGLRSIGTYYNSTLDLWLSRDDYATLHQR 512
G ++ + W + + + Q
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQSDVSQI 299
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 9e-17
Identities = 45/273 (16%), Positives = 102/273 (37%), Gaps = 22/273 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ +L++ ++ + ++L + +++ + ++ I L ++ L L+
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL+ L N L L + N + +LK L L + + I + L
Sbjct: 75 NKLTDIKPLTNLKN------LGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGL 127
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+H L+ L L +NK+ + + T L+ L L +N S I+ L + L++L +
Sbjct: 128 VHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDIVPLAGLTK--LQNLYL 182
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241
S N+ I L G L+ L ++++ + + + +
Sbjct: 183 SKNH-ISDLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TP 236
Query: 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQL 274
++ E +V + +++ +
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 19/265 (7%)
Query: 152 LEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
+ + I ++ ++ + QN L + I + ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAE--TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDI 55
Query: 212 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNL 271
+ ++ I + + L L+ NK + + +L +L + EN + +L
Sbjct: 56 K-SVQ-GIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKI--KDLSSLKDL 108
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
+L+ L L++N + I GL++ L L + NN ++ I + + LD L + N
Sbjct: 109 KKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164
Query: 332 LEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRST 391
+ +I + +L+ LYLS+N + + + L ++ L L + +
Sbjct: 165 IS-DIV-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Query: 392 ELLTLDLRDNKFFGRIPHQINKHSE 416
T+ D + E
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDYE 246
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 1e-12
Identities = 47/270 (17%), Positives = 87/270 (32%), Gaps = 26/270 (9%)
Query: 48 IANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107
L + + L + + + +N+ + + L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQNELNS------IDQIIANNSDIKSVQGIQYLPNVTKL 70
Query: 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ 167
L L I L + NL +L L NK+ +++ L+ L L +N S I
Sbjct: 71 FLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGISDING 126
Query: 168 LPKVKHDFLRHLDISNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKEL 225
L + L L + NN + I L + L KL + + N +I + + +L
Sbjct: 127 LVHLPQ--LESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQIS-DIV-PLAGLTKL 177
Query: 226 FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT 285
L LS+N S DL A + G +L+ L++ NL + +
Sbjct: 178 QNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCW 315
+ + ++ +L
Sbjct: 235 TPEI--ISDDGDYEKPNVKWHLPEFTNEVS 262
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 9e-11
Identities = 47/242 (19%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
M E + + D + A ++ + + T L + + N
Sbjct: 1 MGETITVSTPIKQIFPD------DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
+ ++ G+ + L ++ N L+ P + N L L + +N ++ ++ +
Sbjct: 53 SDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LK 106
Query: 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
+ ++L+ L L N + I ++L + LYL N ++ + L R T+L TL L DN
Sbjct: 107 DLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163
Query: 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ +P + ++L+ L L N++ ++ AL L+ L +L+L + + +N
Sbjct: 164 QISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 462 VL 463
++
Sbjct: 220 LV 221
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L L L L +N++ L+ L L V ++ S + + +NL + +D
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF 102
+ +S ++ V L N T
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 58/313 (18%), Positives = 87/313 (27%), Gaps = 49/313 (15%)
Query: 3 LKNLTELDLRENNLEGQLPW----RLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
++L L R + + + L L V + ++ L+ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 59 LSDNNFQGEFPLSLL-TNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI 117
L + G P LL +L +L L VS T + +L
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVS----------WATRDAWLAELQQWLKP-- 149
Query: 118 PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
LK L ++ NF ++ L L LS+N G
Sbjct: 150 --------GLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG------------- 187
Query: 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 237
LI L LQ L L + G +L LDLS N
Sbjct: 188 -----ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 238 DLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHG 297
A S + + L L++S P + +L L L N L
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGL--KQVPKGL-PAKLSVLDLSYNRLDRNPSPDELPQ-- 297
Query: 298 LVVLDISNNLLSG 310
+ L + N
Sbjct: 298 VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 1e-15
Identities = 46/272 (16%), Positives = 92/272 (33%), Gaps = 40/272 (14%)
Query: 1 MKLKNLTELDLRENNLEGQLPW---RLSDLTGLKVFDISSNQLSGNLPSVIANLT--SLE 55
+K +L L +R + ++ + R+ ++GL+ + + +++G P + T L
Sbjct: 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124
Query: 56 YLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK 115
L L + ++ L++L ++
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA----------------------HSL 162
Query: 116 VIPSFLLHQY-NLKFLDLSSNKLVGNFPTWLM---QNNTNLEVLRLSNNSFSGILQLPK- 170
+ + L LDLS N +G L+VL L N +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 171 --VKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228
L+ LD+S+N+L +L +++S + +P + +L +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVL 279
Query: 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNF 260
DLS N+ S + + L + N F
Sbjct: 280 DLSYNRLD---RNPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 3e-15
Identities = 54/249 (21%), Positives = 85/249 (34%), Gaps = 21/249 (8%)
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT---YMNLTQLRGLYL 279
+ L L + + T + SL+ L V I + ++ L+ L L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 280 KNNHFTGKIKAGLLNSHG--LVVLDISNNLLSGHIPCWIGNFSYLD----VLLMSKNHLE 333
+N TG LL + G L +L++ N + +L VL +++ H
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 334 GNIPVQINNFRQLEILYLSENRLFGSIA--------SFLNLSSIMHLYLQKNALSGQIPS 385
Q+ F L L LS+N G F L + SG +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 386 TLLRSTELLTLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRIL 444
+L LDL N S+L L L L+ + KL +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVL 279
Query: 445 DLSHNKLNG 453
DLS+N+L+
Sbjct: 280 DLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 57/308 (18%), Positives = 95/308 (30%), Gaps = 46/308 (14%)
Query: 68 FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY-- 125
+ L +LE L + + + I + LK L + + F +
Sbjct: 34 ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93
Query: 126 --NLKFLDLSSNKLVGN-FPTWLMQNNTNLEVLRLSNNSFSG----ILQLPKVKHDFLRH 178
L+ L L + ++ G P L +L +L L N S++ + +L + L+
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI----GEMKELFLLDLSRNK 234
L I+ + V L +D+S N G + L +L L
Sbjct: 154 LSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 235 FS--GDLSATSVNGCASLEYLDVSENNFYGHIFPTYM-NLTQLRGLYLKNNHFTGKIKAG 291
+ + L+ LD+S N+ +QL L L ++ G
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271
Query: 292 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
L L VLD+S N L P + Q+ L L
Sbjct: 272 LPAK--LSVLDLSYNRLD-RNP-------------------------SPDELPQVGNLSL 303
Query: 352 SENRLFGS 359
N S
Sbjct: 304 KGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 1e-14
Identities = 54/287 (18%), Positives = 100/287 (34%), Gaps = 21/287 (7%)
Query: 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL---Q 167
NC +L++L + + + +L+ L + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMG-TVLQKLMLIDISKNNFEGNIPY----SIGEM 222
L + L+ L + N + GT P + L ++++ ++ +
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM----NLTQLRGLY 278
L +L +++ + S V +L LD+S+N G L+ L
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 279 LKNNHFT---GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF-SYLDVLLMSKNHLEG 334
L+N G A L LD+S+N L ++ S L+ L +S L+
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 335 NIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSG 381
+P + +L +L LS NRL S L + +L L+ N
Sbjct: 268 -VPKGL--PAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 58/297 (19%), Positives = 93/297 (31%), Gaps = 36/297 (12%)
Query: 145 LMQNNTNLEVLRLSNNSFSGILQLPKV-KHDFLRHLDISNNNLIGTLPQNMGTVLQ--KL 201
L +LE L ++ + + Q + K L+ L + + + VL L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFY 261
+ + G P + E L L+ S + + +
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-----------------ATRDAWL 140
Query: 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI----G 317
+ L+ L + H + L LD+S+N G
Sbjct: 141 AELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 318 NFSYLDVLLMSKNHLE---GNIPVQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHL 372
F L VL + +E G QL+ L LS N L + S S + L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 373 YLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429
L L Q+P L L LDL N+ R P ++ ++ L L+GN
Sbjct: 259 NLSFTGLK-QVPKGLPAK--LSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-10
Identities = 41/198 (20%), Positives = 63/198 (31%), Gaps = 17/198 (8%)
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW---IGNFSYLDVLLMSKNHLE 333
L + ++ S L L + + I + S L L + +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 334 GNIPVQI--NNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSG----QIPSTL 387
G P + L IL L A L + L+ +++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 388 LRS-TELLTLDLRDNKFFGRIPHQI----NKHSELRVLLLRGNYLQ---GEIPIALCQLQ 439
+R L TLDL DN G K L+VL LR ++ G
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 440 KLRILDLSHNKLNGSIPS 457
+L+ LDLSHN L + +
Sbjct: 229 QLQGLDLSHNSLRDAAGA 246
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 43/264 (16%), Positives = 89/264 (33%), Gaps = 31/264 (11%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ +E+ + ++P L +L + LE + +S N+
Sbjct: 10 SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP------TFQLKVLQLPNCSLKVIP 118
+ +N L +R+ K +NNL + I L+ L + N +K +P
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEK-ANNLLY-----INPEAFQNLPNLQYLLISNTGIKHLP 120
Query: 119 SFL-LHQYNLKFLDLSSNKLVGNFPTWLMQN-NTNLEVLRLSNNSFS----GILQLPKVK 172
+H LD+ N + + +L L+ N +
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ-- 178
Query: 173 HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
L L++S+NN + LP ++ +++DIS+ Y + +K+L
Sbjct: 179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235
Query: 233 NKFSGDLSATSVNGCASLEYLDVS 256
K ++ +L ++
Sbjct: 236 LK-----KLPTLEKLVALMEASLT 254
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDIS-SNQLSGNLPSVIANLTSLEYLVLS 60
+L ++++ +N++ + S+L L I +N L P NL +L+YL++S
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP-------TFQLKVLQLPNCS 113
+ + P + +L + +N+ T I +F+ +L L
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDI---QDNINIHT---IERNSFVGLSFESVILWLNKNG 165
Query: 114 LKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH 173
++ I + + L L+LS N + P + + +L +S I LP
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR---IHSLPSYGL 222
Query: 174 DFLRHLDISNNNLIGTLP 191
+ L+ L + + LP
Sbjct: 223 ENLKKLRARSTYNLKKLP 240
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 48/280 (17%), Positives = 98/280 (35%), Gaps = 42/280 (15%)
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
R + + +P ++ +L + +L +++S+N
Sbjct: 12 RVFLCQESKV-TEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTGKIKAGL-LN 294
+ A + L + + + N +I P + NL L+ L + N + ++
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126
Query: 295 SHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352
S V+LDI +N+ I ++G +L ++KN ++ I N QL+ L LS
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185
Query: 353 ENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPH 409
+N + F S + L + + + +PS L + +L + K
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK------- 237
Query: 410 QINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
++P L +L L L++
Sbjct: 238 --------------------KLP-TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 34/230 (14%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYL-KNNHFT 285
L K + + +G LE +++S+N+ I + NL +L + + K N+
Sbjct: 35 LRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93
Query: 286 GKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344
I + L L ISN + H+P + +
Sbjct: 94 -YINPEAFQNLPNLQYLLISNTGIK-HLPD--VHKIHS---------------------L 128
Query: 345 QLEILYLSENRLFGSIA--SFLNLSSIMH-LYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
Q +L + +N +I SF+ LS L+L KN + +I ++ T+L L+L DN
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187
Query: 402 KFFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450
+P+ + S +L + + L L+KLR + K
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 20/196 (10%)
Query: 274 LRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVL----LMS 328
L I+ G + L ++IS N + I FS L L +
Sbjct: 32 AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEK 88
Query: 329 KNHLEGNIPVQI-NNFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPS 385
N+L I + N L+ L +S + + ++ + L +Q N I
Sbjct: 89 ANNLL-YINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 386 TLLR--STELLTLDLRDNKFFGRIPHQINKHSEL-RVLLLRGNYLQGEIPI-ALCQLQKL 441
S E + L L N I + ++L + L N L+ E+P
Sbjct: 147 NSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGP 204
Query: 442 RILDLSHNKLNGSIPS 457
ILD+S +++ S+PS
Sbjct: 205 VILDISRTRIH-SLPS 219
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 31/167 (18%), Positives = 52/167 (31%), Gaps = 18/167 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPS-VIANLTS-LEYLVL 59
L NL L + ++ + DI N + L+ L L
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ----LKVLQLPNCSLK 115
+ N Q E S N + L+ L L +NNL + F +L + +
Sbjct: 162 NKNGIQ-EIHNSAF-NGTQLDELNLSD-NNNLEELPND---VFHGASGPVILDISRTRIH 215
Query: 116 VIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161
+PS+ L L+ + K + + L L+ S
Sbjct: 216 SLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 367 SSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKHSELRVL-LLR 423
+ + L L I +L +++ N I + + +L + + +
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
N L P A L L+ L +S+ + +P
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 40/259 (15%), Positives = 96/259 (37%), Gaps = 24/259 (9%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L +T L + + L L ++ NQ++ + + NLT + L LS
Sbjct: 39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSG 94
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSF 120
N + ++ L + ++ L +++ + + L+VL L + I
Sbjct: 95 NPLKNVSAIAGLQS------IKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNISP- 146
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L NL++L + + ++ P + N + L L+ +N S I L + + L +
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPN--LIEVH 201
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
+ NN I + L ++ ++ + L + ++ + ++
Sbjct: 202 LKNNQ-ISDVSPLAN--TSNLFIVTLTNQTITNQPVF---YNNNLVVPNVVKGPSGAPIA 255
Query: 241 ATSVNGCASLEYLDVSENN 259
+++ + +++ N
Sbjct: 256 PATISDNGTYASPNLTWNL 274
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 56/310 (18%), Positives = 111/310 (35%), Gaps = 52/310 (16%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L N ++ ++N+ + +DL G+ ++ + + L +L L L D
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL LT + L+L LK + + +
Sbjct: 73 NQITDLAPLKNLTK----------------------------ITELELSGNPLKNVSA-I 103
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
++K LDL+S ++ P + +NL+VL L N + I L + + L++L I
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTN--LQYLSI 158
Query: 182 SNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
N + + L L KL + N +I + + L + L N+ S
Sbjct: 159 GNAQVSDLTPLAN-----LSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS--- 208
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
+ + ++L + ++ P + N + +K A + ++
Sbjct: 209 DVSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYA 266
Query: 300 VLDISNNLLS 309
+++ NL S
Sbjct: 267 SPNLTWNLTS 276
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 42/253 (16%), Positives = 89/253 (35%), Gaps = 19/253 (7%)
Query: 150 TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
N + ++ + + + + L + T+ L L+ +++ N
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTG-VTTIEGVQY--LNNLIGLELKDN 73
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
++ + + ++ L+LS N + +++ G S++ LD++
Sbjct: 74 QIT-DLA-PLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD--VTPLA 126
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
L+ L+ LYL N T I L L L I N +S P + N S L L
Sbjct: 127 GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182
Query: 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
N + P + + L ++L N++ ++ N S++ + L ++ Q
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQTITNQPVFYNNN 239
Query: 390 STELLTLDLRDNK 402
+
Sbjct: 240 LVVPNVVKGPSGA 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280
+ + ++ + + + L L L GL LK
Sbjct: 17 ALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71
Query: 281 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI 340
+N T + L N + L++S N L I + L ++ + P +
Sbjct: 72 DNQIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125
Query: 341 NNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
L++LYL N++ +I+ L+++ +L + +S + L ++L TL D
Sbjct: 126 AGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADD 182
Query: 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460
NK P + L + L+ N + P+A L I+ L++ +
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNN 238
Query: 461 NVL 463
N++
Sbjct: 239 NLV 241
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC 314
+++ IFP L + ++ T + L+ + L ++ I
Sbjct: 3 ITQPTAINVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG 58
Query: 315 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374
+ + L L + N + ++ + N ++ L LS N L ++++ L SI L L
Sbjct: 59 -VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDL 114
Query: 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434
++ P L + L L L N+ P + + L+ L + + P+A
Sbjct: 115 TSTQITDVTPLAGL--SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA 170
Query: 435 LCQLQKLRILDLSHNKL 451
L KL L NK+
Sbjct: 171 --NLSKLTTLKADDNKI 185
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 45/260 (17%), Positives = 100/260 (38%), Gaps = 26/260 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ +L++ ++ + ++L + +++ + ++ I L ++ L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL+ L N L L + N + +LK L L + + I + L
Sbjct: 78 NKLTDIKPLANLKN------LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGL 130
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+H L+ L L +NK+ + T L+ L L +N S I+ L + L++L +
Sbjct: 131 VHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVPLAGLTK--LQNLYL 185
Query: 182 SNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
S N++ + L L+ L ++++ L + + +N +
Sbjct: 186 SKNHISDLRAL-----AGLKNLDVLELFSQECLNKPIN---HQSNLVVPNTVKNTDGSLV 237
Query: 240 SATSVNGCASLEYLDVSENN 259
+ ++ E +V +
Sbjct: 238 TPEIISDDGDYEKPNVKWHL 257
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 44/262 (16%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83
++ ++ L S++ ++ ++++ + + L N +
Sbjct: 20 DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPN------VT 71
Query: 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPT 143
L ++ N + L L L +K + S L LK L L N +
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING- 129
Query: 144 WLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML 203
+ + LE L L NN + I L ++ L L + +N +
Sbjct: 130 --LVHLPQLESLYLGNNKITDITVLSRLTK--LDTLSLEDNQ-----------------I 168
Query: 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263
DI + + +L L LS+N S DL A + G +L+ L++
Sbjct: 169 SDIV----------PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNK 215
Query: 264 IFPTYMNLTQLRGLYLKNNHFT 285
NL + +
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 42/247 (17%), Positives = 91/247 (36%), Gaps = 19/247 (7%)
Query: 157 LSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
I ++ ++ + QN L + I + ++ + ++
Sbjct: 9 TVPTPIKQIFSDDAFAE--TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQ 62
Query: 217 YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276
I + + L L+ NK + + +L +L + EN + +L +L+
Sbjct: 63 -GIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKS 116
Query: 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336
L L++N + I GL++ L L + NN ++ + + LD L + N + +I
Sbjct: 117 LSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI 171
Query: 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
+ +L+ LYLS+N + + + L ++ L L + + T+
Sbjct: 172 V-PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Query: 397 DLRDNKF 403
D
Sbjct: 230 KNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 43/218 (19%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
A ++ + + T L + + N+ ++ G+ + L ++
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLN 365
N L+ P + N L L + +N ++ ++ + + ++L+ L L N + I ++
Sbjct: 78 NKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI-SDINGLVH 132
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425
L + LYL N ++ + L R T+L TL L DN+ + ++L+ L L N
Sbjct: 133 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN 188
Query: 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
++ ++ AL L+ L +L+L + + +N++
Sbjct: 189 HIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLV 224
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 18/209 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L N + +L + ++ + +L+G++ F+ ++ + +L + T+L+ L LS
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N +S L+ +L L L V+ N IP+ L L L N L+ L
Sbjct: 73 NQ------ISDLSPLKDLTKLEELSVNRNRLKNLNG-IPSACLSRLFLDNNELRDT-DSL 124
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
+H NL+ L + +NKL + + LEVL L N + L ++K + +D+
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGLTRLKK--VNWIDL 179
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNN 210
+ P L +
Sbjct: 180 TGQK-CVNEPVKYQPELYITNTVKDPDGR 207
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 25/238 (10%)
Query: 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83
L ++ ++ L+ ++ ++N Q + TN L+
Sbjct: 15 DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTN------LK 66
Query: 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPT 143
L +S+N +L+ L + LK + + L L L +N+L
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTDS- 123
Query: 144 WLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL--IGTLPQNMGTVLQKL 201
+ + NLE+L + NN I+ L + L LD+ N + G L + L+K+
Sbjct: 124 --LIHLKNLEILSIRNNKLKSIVMLGFLSK--LEVLDLHGNEITNTGGLTR-----LKKV 174
Query: 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259
ID++ EL++ + ++ +S ++ S V
Sbjct: 175 NWIDLTGQKCVNEPVKY---QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 17/222 (7%)
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 240
I I + + G L + ++ K + + E+ + + + S
Sbjct: 3 IQRPTPINQVFPDPG--LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---S 55
Query: 241 ATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
+ +L+ L +S N +LT+L L + N + + S L
Sbjct: 56 LAGMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSR 110
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
L + NN L + + L++L + N L+ +I + +LE+L L N + +
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI-TNT 165
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
L + + L + T+ D +
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
L L T + G+ + N+ + + + F+ L L +S
Sbjct: 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72
Query: 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
N + ++ + + +LE L ++ NRL + + + + L+L N L +L+
Sbjct: 73 NQIS-DLS-PLKDLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELRD--TDSLIH 126
Query: 390 STELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
L L +R+NK + + S+L VL L GN + + +L+K+ +DL+
Sbjct: 127 LKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQ 182
Query: 450 KL 451
K
Sbjct: 183 KC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 29/208 (13%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN-- 160
L S+ + ++ + ++ + MQ TNL+ L LS+N
Sbjct: 20 NAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQI 75
Query: 161 -SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
S + L K L L ++ N + L L +L L N +
Sbjct: 76 SDLSPLKDLTK-----LEELSVNRNR-LKNLNGIPSACLSRLFL---DNNELRDTDS--L 124
Query: 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279
+K L +L + NK S + + LE LD+ N L ++ + L
Sbjct: 125 IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDL 179
Query: 280 KNNHFTGKIKAGLLNSHGLVVLDISNNL 307
L I+N +
Sbjct: 180 TGQKCV------NEPVKYQPELYITNTV 201
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 7e-12
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 45/191 (23%)
Query: 2 KLKNLTELDLRENN---LEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
++ +LT + L N L G + +K I++ + + I+ L++LE L
Sbjct: 42 QMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP 118
+ + + +L S L L LL +S++ + L
Sbjct: 95 IMGKDVTSDKIPNL----SGLTSLTLLDISHS-----------------AHDDSIL---- 129
Query: 119 SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN---SFSGILQLPKVKHDF 175
+ + + +DLS N + + ++ L+ L + + + GI PK
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPK----- 182
Query: 176 LRHLDISNNNL 186
L L + +
Sbjct: 183 LNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 29/161 (18%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
+L ++ L++ + ++ N++ L ++N + + + + L L I +
Sbjct: 45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKD 99
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
+ N+ L L L+DIS + + +I I + ++ +DLS N D+ +
Sbjct: 100 VTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK 156
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG 286
L+ L++ + H + + +L LY + G
Sbjct: 157 TLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 6e-11
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 31/164 (18%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
N+ +L + + P +S L+ L+ I ++ + ++ LTSL L +S
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
+ L+ + + + L S N L
Sbjct: 122 SAHDDS-ILTKINTLPKVNSIDL---SYNGAITD----------------------IMPL 155
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165
LK L++ + + +++ L L + + G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 11/185 (5%)
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
L + +A + + L + ++N ++ I + L ++
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLL 388
H P I+ LE L + + L L+S+ L + +A I + +
Sbjct: 76 IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
++ ++DL N I + EL+ L ++ + + I KL L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190
Query: 449 NKLNG 453
+ G
Sbjct: 191 QTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 44/195 (22%)
Query: 48 IANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107
A + SL Y+ L++ N + N +K L
Sbjct: 40 EAQMNSLTYITLANINVTDLTGIEYAHN----------------------------IKDL 71
Query: 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN-----SF 162
+ N + + NL+ L + + + L T+L +L +S++
Sbjct: 72 TINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSIL 129
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ I LPK + +D+S N I + L +L ++I + I +
Sbjct: 130 TKINTLPK-----VNSIDLSYNGAITDIMPLKT--LPELKSLNIQFDGVHDYRG--IEDF 180
Query: 223 KELFLLDLSRNKFSG 237
+L L G
Sbjct: 181 PKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 33/207 (15%)
Query: 150 TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
+ + S + + + + L ++ ++N N+
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV----------------------T 57
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
+ G I + L ++ + + ++G ++LE L + + P
Sbjct: 58 DLTG-----IEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
LT L L + ++ I + + +D+S N I + L L +
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168
Query: 330 NHLEGNIPVQINNFRQLEILYLSENRL 356
+ + I +F +L LY +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
F+ L ++ + + ++S+ ++ L ++ + L + +
Sbjct: 21 TFKAYLNGLLGQSST--ANITEAQMNSLTYITLANINVTDLTGIEYA--HNIKDLTINNI 76
Query: 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
P I+ S L L + G + + L L L +LD+SH+ + SI +
Sbjct: 77 HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 27/219 (12%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVLSDNN 63
+ LDL N L + L+V D+S ++ + +L+ L L+L+ N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF------QLKVLQLPNCSLKVI 117
Q L + S+L+ L V NL + F LK L + + ++
Sbjct: 88 IQ-SLALGAFSGLSSLQKLVA--VETNLAS-----LENFPIGHLKTLKELNVAHNLIQSF 139
Query: 118 PS--FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEV----LRLSNNSFSGILQLPKV 171
+ + NL+ LDLSSNK+ + ++ + + L LS N + I P
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGA 196
Query: 172 KHDF-LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
+ L+ L + N L ++P + L L I + N
Sbjct: 197 FKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 13/211 (6%)
Query: 248 ASLEYLDVSENNFYGHIFPTYM-NLTQLRGLYLKNNHFTGKIKAGLLNSHG-LVVLDISN 305
S + LD+S N H+ + +L+ L L I+ G S L L ++
Sbjct: 28 FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL--FGSIASF 363
N + S L L+ + +L I + + L+ L ++ N + F F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRS-----TELLTLDLRDNKFFGRIPHQINKHSELR 418
NL+++ HL L N + I T LR L+LDL N I K L+
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLK 203
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449
L L N L+ +L L+ + L N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L +L+ L L N ++ L S L+ L+ L+ I +L +L+ L ++
Sbjct: 74 SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR------FKTENWIPTFQLKVLQLPNCSL 114
N Q +N +NLE L L SN ++ + + +P L L L +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDL--SSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPM 189
Query: 115 KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160
I + LK L L +N+L + P + T+L+ + L N
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 45/229 (19%)
Query: 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87
K D+S N L + L+ L LS Q + S+L L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84
Query: 88 SNNLRFKTENWIP--TF----QLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKL--- 137
N ++ + F L+ L +L + +F + LK L+++ N +
Sbjct: 85 GNPIQS-----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 138 --VGNFPTWLMQNNTNLEVLRLSNN--------SFSGILQLPKVKHDFLRHLDISNNNLI 187
F N TNLE L LS+N + Q+P + LD+S N +
Sbjct: 140 KLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN----LSLDLSLNP-M 189
Query: 188 GTLPQNM--GTVLQKLMLIDISKNNFEGNIPYSI-GEMKELFLLDLSRN 233
+ L++L L N ++P I + L + L N
Sbjct: 190 NFIQPGAFKEIRLKELAL----DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 22/198 (11%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFS---YLDVLLM 327
+ L L N + + S L VLD+S + I G + +L L++
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIE--DGAYQSLSHLSTLIL 83
Query: 328 SKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNAL-SGQI 383
+ N ++ ++ + + L+ L E L S+ + +L ++ L + N + S ++
Sbjct: 84 TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 384 PSTLLRSTELLTLDLRDNKFFGRIPHQI-----NKHSELRVLLLRGNYLQGEIPIALCQL 438
P T L LDL NK I L L N + I +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 439 QKLRILDLSHNKLNGSIP 456
+L+ L L N+L S+P
Sbjct: 200 IRLKELALDTNQLK-SVP 216
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 342 NFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDL 398
+F +L++L LS + +I + +LS + L L N + + + L L
Sbjct: 50 SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107
Query: 399 RDNKFFGRIPHQI-NKHSELRVLLLRGNYLQG-EIPIALCQLQKLRILDLSHNKLNGSIP 456
+ + + L+ L + N +Q ++P L L LDLS NK+ SI
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165
Query: 457 S 457
Sbjct: 166 C 166
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 346 LEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403
+ L LS N L + S F + + L L + + + L TL L N
Sbjct: 30 TKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 404 FGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
+ S L+ L+ L + L+ L+ L+++HN + S
Sbjct: 89 -QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL 141
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 42/263 (15%), Positives = 93/263 (35%), Gaps = 43/263 (16%)
Query: 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87
+ F ++ + +PS+ S + L L + + + P +N N+ + +
Sbjct: 11 HQEEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI- 64
Query: 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLM 146
+ +L+ + S + + +++ + + + +
Sbjct: 65 -----------------------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101
Query: 147 QNNTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDISNNNLIGTLP----QNMGTVLQKL 201
+ L+ L + N L KV D L+I++N + ++P Q + L
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161
Query: 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCAS-LEYLDVSENNF 260
L N F ++ +L + L++NK+ + + G S LDVS+ +
Sbjct: 162 KL---YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
Query: 261 YGHIFPTYMNLTQLRGLYLKNNH 283
P+ L L+ L +N
Sbjct: 218 --TALPSKG-LEHLKELIARNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 32/228 (14%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTG 286
L L + + + + ++ + VS + + ++ NL+++ + ++N
Sbjct: 36 LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94
Query: 287 KIKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345
I L L L I N L P + +
Sbjct: 95 YIDPDALKELPLLKFLGIFNTGLK-MFPDLTK----------------------VYSTDI 131
Query: 346 LEILYLSENRLFGSIA--SFLNLSS-IMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
IL +++N SI +F L + + L L N + + T+L + L NK
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190
Query: 403 FFGRIPHQI--NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
+ I +S +L + + L L++L +
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 35/225 (15%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ + +++ ++P L + L +NL ++ + +S +
Sbjct: 12 QEEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--TF----QLKVLQLPNCSLKVIP 118
+ N S + + + N I LK L + N LK+ P
Sbjct: 68 LQQLESHSFYNLSKVTHIEI---RNTRNLTY---IDPDALKELPLLKFLGIFNTGLKMFP 121
Query: 119 --SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN-LEVLRLSNNSFS----GILQLPKV 171
+ + L+++ N + + P Q N L+L NN F+ K
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK- 180
Query: 172 KHDFLRHLDISNNNLIGTLP----QNMGTVLQKLMLIDISKNNFE 212
L + ++ N + + + + L D+S+ +
Sbjct: 181 ----LDAVYLNKNKYLTVIDKDAFGGVYSGPSLL---DVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 30/192 (15%), Positives = 71/192 (36%), Gaps = 19/192 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVLS 60
L N++ + + + QL +L+ + +I + + + + L L++L +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP-------TFQLKVLQLPNCS 113
+ + LT + ++ +L++++N + IP + L+L N
Sbjct: 114 NTGLKM---FPDLTKVYSTDIFFILEITDNPYMTS---IPVNAFQGLCNETLTLKLYNNG 167
Query: 114 LKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQN-NTNLEVLRLSNNSFSGILQLPKVK 172
+ + + L + L+ NK + + +L +S S + LP
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKG 224
Query: 173 HDFLRHLDISNN 184
+ L+ L N
Sbjct: 225 LEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 20/222 (9%)
Query: 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL-NSHGLVVLDISN 305
C E V+ + P+ + L L H I + N + + +S
Sbjct: 10 CHQEEDFRVTCKDI--QRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI 64
Query: 306 NLLSGHIPCWIGNFSYLD---VLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRL--FGS 359
++ + +F L + + I L+ L + L F
Sbjct: 65 DVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122
Query: 360 IASFLNLSSIMHLYLQKNALSGQIPSTLLR--STELLTLDLRDNKFFGRIPHQINKHSEL 417
+ + L + N IP + E LTL L +N F + ++L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKL 181
Query: 418 RVLLLRGNYLQGEIPIALCQ--LQKLRILDLSHNKLNGSIPS 457
+ L N I +LD+S + ++PS
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 48/187 (25%), Positives = 64/187 (34%), Gaps = 38/187 (20%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
LT+L+L L +L L L D+S NQL +LP + L +L L +S
Sbjct: 53 PYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N PL L L+ L L N +LK L P L
Sbjct: 110 NRLT-SLPLGALRGLGELQELYL---KGN------------ELKTLP---------PGLL 144
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS----GILQLPKVKHDFLR 177
L+ L L++N L P L+ NL+ L L NS G L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-----LP 198
Query: 178 HLDISNN 184
+ N
Sbjct: 199 FAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 51/234 (21%), Positives = 78/234 (33%), Gaps = 44/234 (18%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ E++ + NL LP L + +S N L + + T L L L
Sbjct: 11 SHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
L L+V L L L L + L+ +P
Sbjct: 67 -----------------LTKLQVDGTLP----------VLGTLDLSHNQLQSLPLLGQTL 99
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQLPKVKHDFLRHL 179
L LD+S N+L + P ++ L+ L L N + PK L L
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----LEKL 153
Query: 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
++NNNL LP + L+ L + + +N+ IP L L N
Sbjct: 154 SLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 16/180 (8%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
L LS N S ++ L L++ L L L L +N
Sbjct: 36 LHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHLEGNIPVQI-NNF 343
+ L VLD+S N L+ +P +G L L + N L+ +P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGLGELQELYLKGNELK-TLPPGLLTPT 147
Query: 344 RQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
+LE L L+ N L + L ++ L LQ+N+L IP S L L N
Sbjct: 148 PKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 319 FSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNA 378
+L +S+N L + + +L L L L + L + L L N
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ 88
Query: 379 LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQ 437
L +P L LD+ N+ +P EL+ L L+GN L+ P L
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 438 LQKLRILDLSHNKLNGSIPS 457
KL L L++N L +P+
Sbjct: 147 TPKLEKLSLANNNLT-ELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359
+L +S NLL + ++ L L + + L + V L L LS N+L
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSL 92
Query: 360 IASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKHSEL 417
L ++ L + N L+ +P LR EL L L+ N+ +P + +L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKL 150
Query: 418 RVLLLRGNYLQGEIPI-ALCQLQKLRILDLSHNKLNGSIP 456
L L N L E+P L L+ L L L N L +IP
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP 188
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 21/190 (11%)
Query: 126 NLKFLDLSSNKLV---GNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
+ ++ L + P + +L LS N + + L L++
Sbjct: 11 SHLEVNCDKRNLTALPPDLPK-------DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSAT 242
L L + L L +D+S N + ++P + L +LD+S N+ + L
Sbjct: 64 RAEL-TKLQVDGT--LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118
Query: 243 SVNGCASLEYLDVSENNFYGHIFP--TYMNLTQLRGLYLKNNHFTGKIKAGLLNS-HGLV 299
++ G L+ L + N P +L L L NN+ T ++ AGLLN L
Sbjct: 119 ALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
Query: 300 VLDISNNLLS 309
L + N L
Sbjct: 176 TLLLQENSLY 185
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ NL LDL N+L L SDL L+V + +N + + ++ L+ L LS
Sbjct: 86 PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNN 90
N FP+ L+ + + L L LL +S+N
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 48/171 (28%), Positives = 64/171 (37%), Gaps = 22/171 (12%)
Query: 5 NLTELDLRENNLEGQLP-WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
LDL NNL W + LT L +S N L+ + +L YL LS N+
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--TF----QLKVLQLPNCSLKVI 117
L ++ LEVL L +N++ + F QL+ L L +
Sbjct: 100 LH-TLDEFLFSDLQALEVLLL--YNNHIVV-----VDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 118 PSFLLHQY----NLKFLDLSSNKLVGNFPTWLMQNNTNL--EVLRLSNNSF 162
P L+ L LDLSSNKL P +Q L L NN
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-09
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 248 ASLEYLDVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDIS 304
+ LD+S NN + + LT L L L +NH I + L LD+S
Sbjct: 39 SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96
Query: 305 NNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRL---- 356
+N L + FS L+VLL+ NH+ + + QL+ LYLS+N++
Sbjct: 97 SNHLH-TLD--EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTL--LRSTELLTLDLRDN 401
I L +M L L N L + L L + L L +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 319 FSYLDVLLMSKNHLEGNIPVQI--NNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYL 374
SY +L +S N+L + + L L LS N L I+S F+ + ++ +L L
Sbjct: 38 PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDL 95
Query: 375 QKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIP 432
N L + L L L L +N + ++L+ L L N + P
Sbjct: 96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152
Query: 433 ----IALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYG 474
+L KL +LDLS NKL + + W + L+
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 45/194 (23%)
Query: 28 TGLKVFDISSNQLSGNLPS--VIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85
+ + D+S N LS L + LT+L L+LS N+ NL L L
Sbjct: 39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL- 95
Query: 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQY-NLKFLDLSSNKLVGNFPTW 144
S+N L + FL L+ L L +N +V
Sbjct: 96 --SSNH----------------------LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130
Query: 145 LMQNNTNLEVLRLSNN--------SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGT 196
++ L+ L LS N +LPK L LD+S+N + LP
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK-----LMLLDLSSNK-LKKLPLTDLQ 184
Query: 197 VLQKLMLIDISKNN 210
L + + +N
Sbjct: 185 KLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 43/204 (21%)
Query: 113 SLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI-----LQ 167
L +P L LDLS N L W TNL L LS+N + I +
Sbjct: 29 QLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL 227
+P LR+LD+S+N+L L + + D+ L +
Sbjct: 87 VPN-----LRYLDLSSNHL---------HTLDEFLFSDLQA----------------LEV 116
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENN---FYGHIFPTYMNLTQLRGLYLKNNHF 284
L L N + + A L+ L +S+N F + L +L L L +N
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Query: 285 TGKIKAGL--LNSHGLVVLDISNN 306
L L + L + NN
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 336 IPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TE 392
+P + +L LS N L + + L+++ L L N L+ I S
Sbjct: 33 VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89
Query: 393 LLTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
L LDL N + + + L VLLL N++ A + +L+ L LS N++
Sbjct: 90 LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 452 NGSIP 456
+ P
Sbjct: 149 S-RFP 152
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWR----LSDLTGLKVFDISSNQLSGNLPSVIANLTSL--E 55
+ L +L L +N + + P + L L + D+SSN+L + + L +
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
Query: 56 YLVLSDNNFQ 65
L L +N +
Sbjct: 193 GLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 9e-04
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 383 IPSTLLRSTELLTLDLRDNKFFGRIPHQINKH--SELRVLLLRGNYLQGEIPI-ALCQLQ 439
+P +L T LDL N R+ + + L LLL N+L I A +
Sbjct: 33 VPQSLPSYTA--LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 440 KLRILDLSHNKLNGSIPS 457
LR LDLS N L+ ++
Sbjct: 89 NLRYLDLSSNHLH-TLDE 105
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 52/294 (17%), Positives = 95/294 (32%), Gaps = 64/294 (21%)
Query: 1 MKLKNLTELDLRENNL--EG--QLPWRLSDLTGLKVFDISSNQLS----------GNLPS 46
++ ++ E+ L N + E L ++ L++ + S L
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 47 VIANLTSLEYLVLSDNNF--QGEFPL-SLLTNHSNLEVLRLLKVSNN------------- 90
+ L + LSDN F + PL L+ H+ LE L L NN
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL---HNNGLGPQAGAKIARA 145
Query: 91 --LRFKTENWIPTFQLKVLQLPNCSL-----KVIPSFLLHQYNLKFLDLSSNKL----VG 139
+ L+ + L K L + + N + +
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205
Query: 140 NFPTWLMQNNTNLEVLRLSNNSFS--GILQLPKV--KHDFLRHLDISNNN--------LI 187
+ + L+VL L +N+F+ G L LR L +++ ++
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265
Query: 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGE-----MKELFLLDLSRNKFS 236
+ LQ L + N E + ++ M +L L+L+ N+FS
Sbjct: 266 DAFSKLENIGLQTL---RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 49/300 (16%), Positives = 91/300 (30%), Gaps = 63/300 (21%)
Query: 103 QLKVLQLPNCSL-----KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---------MQN 148
+K + L ++ + + + + +L+ + S +
Sbjct: 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92
Query: 149 NTNLEVLRLSNNSFS--GILQLPKV--KHDFLRHLDISNNNL--IGTLPQNMGTVLQKLM 202
L +RLS+N+F L KH L HL + NN L + LQ+L
Sbjct: 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--AKIARALQELA 150
Query: 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV----NGCASLEYLDVSEN 258
+ +KN L + RN+ + S L + + +N
Sbjct: 151 VNKKAKNA------------PPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQN 197
Query: 259 NFYGH-----IFPTYMNLTQLRGLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNL-- 307
+ +L+ L L++N FT + L + L L +++ L
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Query: 308 ------LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-----NNFRQLEILYLSENRL 356
+ L L + N +E + + L L L+ NR
Sbjct: 258 ARGAAAVVDAFSK--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 68/331 (20%)
Query: 27 LTGLKVFDISSNQLSG----NLPSVIANLTSLEYLVLSDNNFQGEFPLSL---LTNHSNL 79
+ G + + ++ ++ +V+ S++ +VLS N E L + + +L
Sbjct: 6 IEGK---SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVG 139
E+ S+ + ++ IP +L+++ LL L + LS N
Sbjct: 63 EIAEF---SDIFTGRVKDEIPE-----------ALRLLLQALLKCPKLHTVRLSDNAFGP 108
Query: 140 NFPTWL---MQNNTNLEVLRLSNNSFS-------------GILQLPKVKHDFLRHLDISN 183
L + +T LE L L NN + LR +
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168
Query: 184 NNL--IGTLPQNMGTVLQK---LMLIDISKNNF-----EGNIPYSIGEMKELFLLDLSRN 233
N L + Q L + + +N E + + +EL +LDL N
Sbjct: 169 NRLENGSM--KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226
Query: 234 KFSGDLS---ATSVNGCASLEYLDVSENNFY-------GHIFPTYMNLTQLRGLYLKNNH 283
F+ S A ++ +L L +++ F N+ L+ L L+ N
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNE 285
Query: 284 FTGK-----IKAGLLNSHGLVVLDISNNLLS 309
L+ L+++ N S
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 60/336 (17%), Positives = 101/336 (30%), Gaps = 71/336 (21%)
Query: 1 MKLKNLTELDLRENNL--EG--QLPWRLSDLTGLKVFDISSNQLSGN----LPSVIANLT 52
M ++ L+ + + E + L + +K +S N + L IA+
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 53 SLEYLVLSDN---NFQGEFPLSL------LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103
LE SD + E P +L L L +RL S+N
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL---SDN------------- 104
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNK------------LVGNFPTWLMQNNTN 151
+ + + FL L+ L L +N L +N
Sbjct: 105 ----AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160
Query: 152 LEVLRLSNNSFS--GILQLPKV--KHDFLRHLDISNNNL----IGTLPQNMGTVLQKLML 203
L + N + + K H L + + N + I L Q+L +
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220
Query: 204 IDISKNNF--EG--NIPYSIGEMKELFLLDLSRNKFSGD-----LSATSVNGCASLEYLD 254
+D+ N F G + ++ L L L+ S + A S L+ L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280
Query: 255 VSENNFY---GHIFPTYM--NLTQLRGLYLKNNHFT 285
+ N T + + L L L N F+
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 61/262 (23%)
Query: 2 KLKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLS-------------GNL 44
K L + L +N L LS T L+ + +N L +
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 45 PSVIANLTSLEYLVLSDNNFQGEFPLSL---LTNHSNLEVLRLLKVSNNLRFKTENWIPT 101
N L ++ N + +H L +++ V N +R
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM--VQNGIR--------- 200
Query: 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKL-------VGNFPTWLMQNNTNLEV 154
P ++ L + LK LDL N + +++ NL
Sbjct: 201 --------PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRE 248
Query: 155 LRLSNNSFS--GILQ----LPKVKHDFLRHLDISNNNL----IGTLPQNMGTVLQKLMLI 204
L L++ S G K+++ L+ L + N + + TL + + L+ +
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308
Query: 205 DISKNNFEGNIPYSIGEMKELF 226
+++ N F + E++E+F
Sbjct: 309 ELNGNRF-SEEDDVVDEIREVF 329
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 72/329 (21%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQK---LMLIDISKNNFEGNIPYSIGEM----KELFLL 228
+ + + + +++ VL + + I +S N + E K+L +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 229 DLSRNKFSGDLSATSVNGCASL-EYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
+ S F+G + L + L + +L + L +N F
Sbjct: 66 EFSDI-FTGRVKDEIPEALRLLLQAL---------------LKCPKLHTVRLSDNAFGPT 109
Query: 288 ----IKAGLLNSHGLVVLDISNN-------------LLSGHIPCWIGNFSYLDVLLMSKN 330
+ L L L + NN L + N L ++ +N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 331 HLEGNIPVQ-----INNFRQLEILYLSENRLF-----GSIASFL-NLSSIMHLYLQKNAL 379
L N ++ + R L + + +N + + L + L LQ N
Sbjct: 170 RL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Query: 380 SGQ----IPSTLLRSTELLTLDLRDNK--------FFGRIPHQINKHSELRVLLLRGNYL 427
+ + L L L L D N L+ L L+ N +
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG--LQTLRLQYNEI 286
Query: 428 QGEIPIALCQ-----LQKLRILDLSHNKL 451
+ + L + L L+L+ N+
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 44/295 (14%), Positives = 86/295 (29%), Gaps = 58/295 (19%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDL-----TGLKVFDISSNQLSGNLPSVIA-----NLTS 53
+T LDL NNL L + ++S N L + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 54 LEYLVLSDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQL 109
+ L LS N + +L + VL L N+ K+ + +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL--GWNDFSSKSSSEF----KQAFSN 135
Query: 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS-- 163
S+ L+L N L L N+ L L N+ +
Sbjct: 136 LPASITS-------------LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 164 ---GILQLPKVKHDFLRHLDISNNNL----IGTLPQNMGTVLQKLMLIDISKNNFEGNIP 216
+ + + LD+S N L L ++ ++ +++ N G
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 217 YSIGEMKE----LFLLDLSRNKFSGDLS-------ATSVNGCASLEYLDVSENNF 260
++ +K+ L + L + ++S + + +D +
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 62/304 (20%)
Query: 46 SVIANLTSLEYLVLSDNNF--QGEFPLS--LLTNHSNLEVLRLLKVSNNLRFKTENWIPT 101
+ + L LS NN L +++ L L N+L FK + +
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL--SGNSLGFKNSDEL-- 71
Query: 102 FQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRL 157
+++L ++ L+LS N L L + VL L
Sbjct: 72 --VQILAAIPANVTS-------------LNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116
Query: 158 SNNSFS-----GILQLPKVKHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLID 205
N FS Q + L++ N+L + + + + L +
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL---N 173
Query: 206 ISKNNFEGNIPYSIGEM-----KELFLLDLSRNKFSGD----LSATSVNGCASLEYLDVS 256
+ NN + + + LDLS N L+ + + L++
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233
Query: 257 ENNFYG----HIFPTYMNLTQLRGLYLKNNHFTGK-------IKAGLLNSHGLVVLDISN 305
N +G ++ +L L+ +YL + + A N ++++D +
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293
Query: 306 NLLS 309
+
Sbjct: 294 KEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 59/385 (15%), Positives = 106/385 (27%), Gaps = 90/385 (23%)
Query: 115 KVIPSFLLHQYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS-----GI 165
+ F + + LDLS N L ++ L LS NS +
Sbjct: 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71
Query: 166 LQLPKVKHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYS 218
+Q+ + L++S N L + + + L D+ N+F
Sbjct: 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL---DLGWNDFSSKSSSE 128
Query: 219 IGEM-----KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273
+ + L+L N G S+ + L +
Sbjct: 129 FKQAFSNLPASITSLNLRGNDL-GIKSSDEL--IQILA----AIP-------------AN 168
Query: 274 LRGLYLKNNHFTGK----IKAGLLNSH-GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328
+ L L+ N+ K + L + + LD+S NLL G + L + S
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSY-----AELAYIFSS 222
Query: 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-----NLSSIMHLYLQKNALSGQ- 382
+ L L N L G L +L + +YL + +
Sbjct: 223 IP-------------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 383 ------IPSTLLRSTELLTLDLRDNKFFGRIPHQI-----NKHSELRVLLLRGNYL---- 427
+ + +++ +D + I + V L L
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQ 329
Query: 428 -QGEIPIALCQLQKLRILDLSHNKL 451
L +LR + L
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 58/348 (16%), Positives = 102/348 (29%), Gaps = 85/348 (24%)
Query: 145 LMQNNTNLEVLRLSNNSFS-----GILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQ 199
+ L LS N+ ++Q + L++S N+L + +L
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD----LSATSVNGCASLEYLDV 255
+ L+LS N S L T ++ LD+
Sbjct: 77 A--------IP------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116
Query: 256 SENNFYG----HIFPTYMNL-TQLRGLYLKNNHFTGK----IKAGLLNSH-GLVVLDISN 305
N+F + NL + L L+ N K + L + L++
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL----FGSIA 361
N L C + L L S + L LS N L + +A
Sbjct: 177 NNL-ASKNC-----AELAKFLASIP-------------ASVTSLDLSANLLGLKSYAELA 217
Query: 362 SFL--NLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
+ ++ L L N L G + L T+ L + N
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-------KNMSK 270
Query: 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463
E L A +QK+ ++D + +++ S +N++
Sbjct: 271 EQCKALGA----------AFPNIQKIILVDKNGKEIHPSHSIPISNLI 308
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVLS 60
+L L L L +N L+ +L L+ ++ N+L LP V L +L L L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT--F----QLKVLQLPNCSL 114
N + P + + + L L L N L+ +P F LK L+L N L
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLG--YNELQS-----LPKGVFDKLTSLKELRLYNNQL 169
Query: 115 KVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160
K +P + LK L L +N+L P + L++L+L N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ +LDL+ N L LT L++ ++ N+L + L +LE L ++DN
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--TF----QLKVLQLPNCSLKVIP 118
Q P+ + NL LRL N L+ +P F +L L L L+ +P
Sbjct: 98 Q-ALPIGVFDQLVNLAELRL--DRNQLKS-----LPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 119 SFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177
+ + +LK L L +N+L P T L+ L+L NN + + + L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 178 HLDISNN 184
L + N
Sbjct: 209 MLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87
K D+ SN+LS LT L L L+DN Q P + NLE L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV--- 92
Query: 88 SNNLRFKTENWIPT------FQLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGN 140
++N + + +P L L+L LK +P + L +L L N+L +
Sbjct: 93 TDN-KLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 141 FPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQK 200
P + T+L+ LRL NN + + K L+ L + NN L +P+ L+K
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 201 LMLIDISKN 209
L ++ + +N
Sbjct: 207 LKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFG 358
LD+ +N LS + L +L ++ N L+ +P I + LE L++++N+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-Q 98
Query: 359 SIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKH 414
++ F L ++ L L +N L +P + S T+L L L N+ +P + +K
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKL 156
Query: 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
+ L+ L L N L+ A +L +L+ L L +N+L F +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP--TYMNLTQLRGLYLKNNHFT 285
LDL NK S L + + + L L +++N P + L L L++ +N
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 286 GKIKAGLLNS-HGLVVLDISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQI-NN 342
+ G+ + L L + N L +P + + + L L + N L+ ++P + +
Sbjct: 99 -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 343 FRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
L+ L L N+L + F L+ + L L N L +L L L++
Sbjct: 156 LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 401 N 401
N
Sbjct: 215 N 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 335 NIPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TE 392
NIP + L L N+L +F L+ + LYL N L +P+ + +
Sbjct: 34 NIPAD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 393 LLTLDLRDNKFFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
L TL + DNK +P + L L L N L+ P L KL L L +N+L
Sbjct: 87 LETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 452 NGSIPS 457
S+P
Sbjct: 146 Q-SLPK 150
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 6e-09
Identities = 86/592 (14%), Positives = 167/592 (28%), Gaps = 193/592 (32%)
Query: 33 FDISSNQ------LSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86
F+ +Q LS + + N D + P S+L+ E+ ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNF---------DCKDVQDMPKSILSKE---EIDHIIM 56
Query: 87 VSNN----------LRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNK 136
+ L K E + F +VL+ N FL+ + S
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYK------FLMSPIKTEQRQPSMMT 109
Query: 137 LVGNFPTWLMQNN----TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI--GTL 190
+ + N+ V RL L+L + L L N++ G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQP-----YLKLRQA----LLELR-PAKNVLIDG-- 157
Query: 191 PQNMG----TVLQKLMLIDIS-KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
+ T + + + + + I F L+L +
Sbjct: 158 ---VLGSGKTWVALDVCLSYKVQCKMDFKI----------FWLNLKNCNSPETV------ 198
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFTGKIKAGLLNS---HGLVVL 301
LE L I P + + + + L+ + +++ L + + L+VL
Sbjct: 199 ----LEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 302 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG-NIPVQINNFRQLEILYLSENRLFGSI 360
+V + N+ +I L + + +
Sbjct: 251 L--------------------NV--QNAKAWNAFNLSCKI--------LLTTRFK---QV 277
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT--LDLRDNKFFGRIPHQINKHSELR 418
FL+ ++ H+ L + + T LL LD R +P ++ + R
Sbjct: 278 TDFLSAATTTHISLDHH----SMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRR 329
Query: 419 V----LLLRG------NYLQGEIPIALCQLQKLRILDLSHNKLNGS-------------- 454
+ +R N+ + I++ S N L +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCD------KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 455 ---IPSCFANVL--FWREGNGD--------LYGSGLDIYFQFGGLRSIGTYYNSTLDLWL 501
IP+ +L W + L+ L + S + + L+L +
Sbjct: 384 SAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIPSIYLELKV 437
Query: 502 SRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIG 553
++ LH+ V + Y + DL L S IG
Sbjct: 438 KLENEYALHRS----IV--DHYNIPKTFDSD-----DLIPPYLDQYFYSHIG 478
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 58/346 (16%), Positives = 107/346 (30%), Gaps = 44/346 (12%)
Query: 2 KLKNLTELDLRENNLE-------GQLPWRLSDLTGLKVFDISSNQLSGN-LPSVIANLTS 53
+ + L + E++ +L + L L + ++S L ++ N S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 54 LEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRF--KTENWIPTFQLKVLQLPN 111
L + + D + +NLE ++ ++ K N + +L L L
Sbjct: 222 LVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279
Query: 112 CSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN-SFSGILQLPK 170
+P ++ LDL L L+Q NLEVL N G+ L +
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339
Query: 171 VKHDFLRHLDISNNNLIGTLPQNMGTV-----------LQKLMLIDISKNNFEGNIPYSI 219
L+ L I + G V Q+L + + ++ SI
Sbjct: 340 YCKQ-LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398
Query: 220 GE----MKELFLLDLSRNKFSGDLSATS-----VNGCASLEYLDVSENNFY------GHI 264
G + + L+ L R + DL + + GC L +I
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458
Query: 265 FPTYMNLTQLRGLYLKNNHFTGK-IKAGLLNSHGLVVLDISNNLLS 309
+R + L + + + L L++ S
Sbjct: 459 G---QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 8e-07
Identities = 70/480 (14%), Positives = 137/480 (28%), Gaps = 73/480 (15%)
Query: 22 WRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPL----------- 70
W D + ++ + + +L L L F L
Sbjct: 44 WFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102
Query: 71 ---SLLTNHSNLEVLRL--LKVSNN-LRFKTENWIPTFQLKVLQLPNCSL---KVIPSFL 121
+ N L+ + + VS+ L + L+ L+L CS + S +
Sbjct: 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFTTDGLLSIV 160
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLM---QNNTNLEVLRLSNNSFSGI----LQLPKVKHD 174
H +K L + + WL Q+NT+LEVL F+ I L+
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220
Query: 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
L + + + ++ L N + +P + L
Sbjct: 221 SLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278
Query: 235 FSGDLSATSV-NGCASLEYLDVSENNFYGHIFPTYM-NLTQLRGLYLKNNHFTGKIKAGL 292
+ G + A + LD+ T + L L +N ++
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352
L L I + G S ++ +++ ++LE + +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ------------GCQELEYMAVY 386
Query: 353 ENRL----FGSIASFL-NLSSIMHLYLQK------NALSGQIPSTLLRSTELLTLDLRDN 401
+ + SI ++L NL + L + L + S L+ +L
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
Query: 402 ---------KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQ-LQKLRILDLSHNKL 451
+ G+ +R +LL E + + L+ L++
Sbjct: 447 QGGLTDLGLSYIGQYSPN------VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L++L L L N + +LP L + L L++ +++N+++ +L +L L L
Sbjct: 78 GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRL 84
DN Q + ++ + L
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHL 159
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 28/159 (17%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+TE+ L +N ++ P S L+ D+S+NQ+S P L SL LVL N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
E P SL L L+LL ++ N + +
Sbjct: 93 T-ELPKSLF---EGLFSLQLLLLNAN----------------------KINCLRVDAFQD 126
Query: 125 -YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
+NL L L NKL ++ + L+ N F
Sbjct: 127 LHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
K L +DL N + P L L + N+++ S+ L SL+ L+L+
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113
Query: 62 NNFQ----GEFPLSLLTNHSNLEVLRLLKVSNN 90
N F +L L LL + +N
Sbjct: 114 NKINCLRVDAF--------QDLHNLNLLSLYDN 138
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 335 NIPVQINNFRQLEILYLSENRLFG-SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTEL 393
N+P I + L +N + +F + + L N +S P L
Sbjct: 29 NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 394 LTLDLRDNKFFGRIPHQI-NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+L L NK +P + L++LLL N + A L L +L L NKL
Sbjct: 83 NSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 453 GSIP 456
+I
Sbjct: 142 -TIA 144
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 277 LYLKNNHFTGKIKAGLLNSHG-LVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHL 332
+ L+ N I G + + L +D+SNN +S + F L+ L++ N +
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELA--PDAFQGLRSLNSLVLYGNKI 92
Query: 333 EGNIPVQI-NNFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
+P + L++L L+ N++ + +F +L ++ L L N L T
Sbjct: 93 T-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 390 STELLTLDLRDN 401
+ T+ L N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161
+L+ + L N + + +L L L NK+ P L + +L++L L+ N
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN- 114
Query: 162 FSGILQLPKVKHD-F-----LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
++ ++ D F L L + +N L T+ + + L+ + + +++N F
Sbjct: 115 -----KINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPFI 165
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 17/195 (8%)
Query: 2 KLKNLTELDLRENNL-EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ +DL + + L LS + L+ + +LS + + +A ++L L LS
Sbjct: 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150
Query: 61 D-NNFQGEFPLSLLTNHSNLEVLRL---LKVSNN-LRFKTENWIPTFQLKVLQLPNCSLK 115
+ F +LL++ S L+ L L + ++ + + L L
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRKN 208
Query: 116 V----IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF---SGILQL 168
+ + + + NL LDLS + ++ N L+ L LS +L+L
Sbjct: 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268
Query: 169 PKVKHDFLRHLDISN 183
++ L+ L +
Sbjct: 269 GEIPT--LKTLQVFG 281
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 7e-08
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L +T LDL N L LP L+ L L+V S N L N+ +ANL L+ L+L +
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCN 517
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL----LKVSNNLRFKTENWIPTFQLKVL 107
N Q + L + L +L L L ++ + +P + +
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP--SVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 39/254 (15%), Positives = 91/254 (35%), Gaps = 10/254 (3%)
Query: 33 FDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR 92
D+ + L+ LP + + + P + + E L ++S
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361
Query: 93 FKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL 152
++ + + + ++ +L + + + +L L L L F T +
Sbjct: 362 TVLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRA 419
Query: 153 EVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
L + F + K+++ +R L +++ +L T+ ++ L + +D+S N
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ-LLLVTHLDLSHNRLR 476
Query: 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-IFPTYMNL 271
+P ++ ++ L +L S N + V L+ L + N ++
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532
Query: 272 TQLRGLYLKNNHFT 285
+L L L+ N
Sbjct: 533 PRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 26/204 (12%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSN-------------QLSGNLPSVIA 49
+ L +L L L L+ + + +
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL----RLLKVSNNLRFKTENWIPTFQLK 105
++L+ + + + L +S L++ R+L +++ + +
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466
Query: 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN---SF 162
L L + L+ +P L L+ L S N L N + N L+ L L NN
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQS 523
Query: 163 SGILQLPKVKHDFLRHLDISNNNL 186
+ I L L L++ N+L
Sbjct: 524 AAIQPLVSCPR--LVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 32/236 (13%)
Query: 216 PYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLR 275
++LF +LS K + + + C L+ L+ I L L
Sbjct: 342 CRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
+F+ ++ LD + ++ + VL ++ L
Sbjct: 400 YEKETLQYFSTLKA---VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455
Query: 336 IPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT 395
+ + + L LS NRL + L + L NAL + + L
Sbjct: 456 LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQE 512
Query: 396 LDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
L L +N ++ + + ++ L +L +L+L N L
Sbjct: 513 LLLCNN--------RLQQSAAIQ---------------PLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 40/258 (15%), Positives = 71/258 (27%), Gaps = 43/258 (16%)
Query: 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257
L L D + I KE LL + D + L ++S
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE-----QLFRCELSV 358
Query: 258 NNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS---GHIPC 314
+ + +L+ L +N I + L+ + S P
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417
Query: 315 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374
++ V + + +L+L+ L + L + HL L
Sbjct: 418 RAAYLDD------LRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDL 470
Query: 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434
N L +P + L VL N L+ +
Sbjct: 471 SHNRLR-------------------------ALPPALAALRCLEVLQASDNALE-NVD-G 503
Query: 435 LCQLQKLRILDLSHNKLN 452
+ L +L+ L L +N+L
Sbjct: 504 VANLPRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 7/205 (3%)
Query: 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306
L +++ + + L + + L ++S
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRCELSVE 359
Query: 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNL 366
+ + + + L L I + + L Y E + S ++
Sbjct: 360 KST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL--YEKETLQYFSTLKAVDP 416
Query: 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426
+L ++ + + ++ L L + H + + + L L N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNR 474
Query: 427 LQGEIPIALCQLQKLRILDLSHNKL 451
L+ +P AL L+ L +L S N L
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNAL 498
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFRQLEILYLSENRLFGSIASF 363
LL CW + + + L + +E + ++ + ++L+ L + +
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK--WCLLTII 389
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423
L + ++ L +K L + LD +KF +++++RVL L
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449
Query: 424 GNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L + L QL + LDLSHN+L ++P A
Sbjct: 450 HKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAA 484
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ E+ L N LE + ++ L LK + SN+++ L+S+ L L
Sbjct: 79 GASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLL 85
DN +L L LL
Sbjct: 138 DNQIT-TVAPGAFDTLHSLSTLNLL 161
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 347 EILYLSENRL--FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF 404
L L+ N + F L + + N ++ ++ + + L N+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-L 93
Query: 405 GRIPHQI-NKHSELRVLLLRGNYLQGEIPI-ALCQLQKLRILDLSHNKLNGSIP 456
+ H++ L+ L+LR N + + + L +R+L L N++ ++
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
KL L +++ N + +G+ ++SN+L + L SL+ L+L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 62 NNFQGEFPLSLLTNHSNLEVLRL 84
N S++ +L L
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSL 136
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 27/159 (16%)
Query: 5 NLTELDLRENNLEGQLPW-RLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
EL L N L L+ + S+N+++ + + ++L+ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
+ + +L+ L L +N ++ + N S +
Sbjct: 93 LE-NVQHKMFKGLESLKTLML---RSN------------RIT--CVGNDSFIGLS----- 129
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
+++ L L N++ +L L L N F
Sbjct: 130 --SVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 248 ASLEYLDVSENNFYGHIFPTYM--NLTQLRGLYLKNNHFTGKIKAGLLNS-HGLVVLDIS 304
L ++ N F + T + L QLR + NN T I+ G G+ + ++
Sbjct: 32 QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89
Query: 305 NNLLSGHIPCWIGNFSY---LDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSI 360
+N L + F L L++ N + + + +L L +N++ ++
Sbjct: 90 SNRLEN-VQ--HKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTV 144
Query: 361 A--SFLNLSSIMHLYLQKNAL 379
A +F L S+ L L N
Sbjct: 145 APGAFDTLHSLSTLNLLANPF 165
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 3 LKNLTELDLRENNLEGQLPWR-LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+NLTEL + L R L L L+ I + L P L L LS
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 62 NNFQ 65
N +
Sbjct: 90 NALE 93
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 335 NIPVQINNFRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTE 392
+ + L LY+ + + L + +L + K+ L P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 393 LLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
L L+L N + + + L+ L+L GN L C L+ L+ +
Sbjct: 82 LSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH-----CSCALRWLQRWEEEGLGGV 135
Query: 453 GSIPSCFANVLFW 465
Sbjct: 136 PEQKLQCHGQGPL 148
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI----- 165
L NL L + + + + + ++ L L + + +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNM--GTVLQKLML 203
P+ L L++S N L +L G LQ+L+L
Sbjct: 77 HFTPR-----LSRLNLSFNALE-SLSWKTVQGLSLQELVL 110
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 37 SNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE 96
+ + + + +L L + + L L L L + V + LRF
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--VKSGLRFVAP 73
Query: 97 NWIPTF----QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLV 138
+ F +L L L +L+ + + +L+ L LS N L
Sbjct: 74 D---AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 9e-05
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 28/133 (21%)
Query: 153 EVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFE 212
+ + + + LP ++ L L I N + L
Sbjct: 12 GLRCTRDGALDSLHHLPGAEN--LTELYIENQQHLQHLELRD----------------LR 53
Query: 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272
G + EL L + ++ ++ + + L L++S N + +
Sbjct: 54 G--------LGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGL 103
Query: 273 QLRGLYLKNNHFT 285
L+ L L N
Sbjct: 104 SLQELVLSGNPLH 116
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKL--VGNFP 142
+K++ L + + + + L L + VI + +D S N++ + FP
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 143 TWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL 186
L+ L ++NN I + L L ++NN+L
Sbjct: 62 -----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 70 LSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSFLLHQYNLK 128
+ ++N R L + EN T Q + + ++ + LK
Sbjct: 9 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLK 67
Query: 129 FLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN---SFSGILQLPKVKHDFLRHLDISNN 184
L +++N++ L Q +L L L+NN + L +K L +L I N
Sbjct: 68 TLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS--LTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 3 LKNLTELDLRENN---LEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVL 59
L +D +N L+G L LK +++N++ + L L L+L
Sbjct: 41 LDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRLLK--VSN--NLRFKTENWIPTFQLKVL 107
++N+ L L + +L L +L+ V+N + R +P Q++VL
Sbjct: 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP--QVRVL 145
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LDV 324
Y N + R L L+ I+ +D S+N + + F L
Sbjct: 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLKT 68
Query: 325 LLMSKNHLEGNIPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKN 377
LL++ N + L L L+ N L G + +L S+ +L + +N
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 75 NHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSS 134
S+++ L L +N +L+ L N L I + L LK L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73
Query: 135 NKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDISNN 184
N++ G L + NL L LS N + + +K + L+ LD+ N
Sbjct: 74 NRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 103 QLKVLQLPNCSLKV--IPSFLLHQYNLKFLDLSSNKL--VGNFPTWLMQNNTNLEVLRLS 158
+K L L N + L+FL + L + N P L+ L LS
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLELS 72
Query: 159 NNSFSGILQLPKVKHDFLRHLDISNNNL 186
+N SG L++ K L HL++S N +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 2 KLKNLTELDLRENNL---EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
+ + L L L L L LK ++S N++SG L + +L +L
Sbjct: 40 EFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLL 85
LS N + + L NL+ L L
Sbjct: 95 LSGNKIKDLSTIEPLKKLENLKSLDLF 121
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 270 NLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LDVL 325
+ ++ L L N+ GK++ L L N L+ I N L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69
Query: 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKN 377
+S N + G + V L L LS N++ +I L ++ L L
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 75 NHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSS 134
+ + L L +N L+ L L N L + S L LK L+LS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE 80
Query: 135 NKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKH-DFLRHLDISNN 184
N++ G L + NL L LS N I L +K + L+ LD+ N
Sbjct: 81 NRIFGGLD-MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 103 QLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKL--VGNFPTWLMQNNTNLEVLRLS 158
++ L L NC I NL+FL L + L V N P L+ L LS
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELS 79
Query: 159 NNSFSGILQLPKVKHDFLRHLDISNNNL 186
N G L + K L HL++S N L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKL 107
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+ NL L L L + L L LK ++S N++ G L + L +L +L LS
Sbjct: 47 EFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLL 85
N + L L L+ L L
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLF 128
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 268 YMNLTQLRGLYLKNNHFT-GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY---LD 323
+R L L N GKI+ L L + N L + N L
Sbjct: 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKLK 74
Query: 324 VLLMSKNHLEGNIPVQINNFRQLEILYLSENRL--FGSIASFLNLSSIMHLYLQKN 377
L +S+N + G + + L L LS N+L ++ L + L L
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360
++ ++ + +D ++ + + ++ ++ I + L L N+L I
Sbjct: 24 ANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKL-HDI 78
Query: 361 ASFLNLSSIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKFFGRIPHQI-NKHSELR 418
++ L+++ +L L N L +P+ + T L L L +N+ +P + +K + L
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
L L N LQ +L L LDLS+N+L S+P
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 56/339 (16%), Positives = 104/339 (30%), Gaps = 37/339 (10%)
Query: 2 KLKNLTELDLRENNLEG-------QLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSL 54
+NL ELDLRE++++ P + L L + ++S L ++ +L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213
Query: 55 EYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCS- 113
+ L L+ + +LL LE L + +R + + +L S
Sbjct: 214 KSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272
Query: 114 -LKVIPSFLLHQY----NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN-SFSGILQ 167
+P++L Y L L+LS + L+ L+ L + + +G+
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332
Query: 168 LPKVKHDFLRHLDISNNNLIGTLP---------QNMGTVLQKLMLIDISKNNFEGNIPYS 218
L D LR L + + P ++ KL + +
Sbjct: 333 LASTCKD-LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391
Query: 219 IGE-MKELFLLDLSRNKFSGDLSATS----------VNGCASLEYLDVSENNFYGHIFPT 267
I + L + T V C L L +S
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451
Query: 268 YMNLTQLRGLYLKNNHFTGK-IKAGLLNSHGLVVLDISN 305
++ L + + + L L L+I +
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 36/271 (13%), Positives = 77/271 (28%), Gaps = 26/271 (9%)
Query: 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQL 109
+ + N P +++ + + L K + F L
Sbjct: 39 EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVEL---------KGKPHFADFNLVPDGW 89
Query: 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF---SGIL 166
I + L+ + L + + + ++ N +VL LS+ G+
Sbjct: 90 GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149
Query: 167 QLPKVKHDFLRHLDISNNNLIGTLPQNMGTV------LQKLMLIDISKNNFEGNIPYSIG 220
+ L+ LD+ +++ + L L + ++ + +
Sbjct: 150 AIAA-TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS------ENNFYGHIFPTYMNLTQL 274
L L L+R L+ + LE L + Y + +L
Sbjct: 209 RCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267
Query: 275 RGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
R L + + A L L++S
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 43/284 (15%), Positives = 88/284 (30%), Gaps = 29/284 (10%)
Query: 1 MKLKNLTELDLR------ENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSL 54
+ L EL ++ L LS L+ + + LP+V + + L
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291
Query: 55 EYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK----------VSNNLRFKTENWIPTFQL 104
L LS Q + LL L+ L +L S + P+
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351
Query: 105 KVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164
+ + + + S + L+ + ++ + +N N+ RL
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411
Query: 165 ILQLPKVKHDF-----------LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
L D LR L +S L + + +GT +K+ ++ ++
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470
Query: 214 NIPYSIGE-MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256
+ + L L++ F + + ++ L +S
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQ- 65
TEL L N +P LS+ L + D+S+N++S +N+T L L+LS N +
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 66 ---GEFPLSLLTNHSNLEVLRLLKVSNN 90
F L + LRLL + N
Sbjct: 93 IPPRTF--DGLKS------LRLLSLHGN 112
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 325 LLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIP 384
L +E + ++ + + L LS N + I+S + ++ L L +N + +I
Sbjct: 30 LHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIK-KIE 86
Query: 385 STLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA-LCQLQKLRI 443
+ + L L + N+ + I K LRVL + N + I L L KL
Sbjct: 87 NLDAVADTLEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 444 LDLSHNKL 451
L L+ N L
Sbjct: 145 LLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 43 NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF 102
+ + ++ L + ++L LS NN + +++ S +E LR+L + NL K EN
Sbjct: 39 KMDATLSTLKACKHLALSTNN------IEKISSLSGMENLRILSLGRNLIKKIENLDAVA 92
Query: 103 Q-LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160
L+ L + + + S + NL+ L +S+NK+ + LE L L+ N
Sbjct: 93 DTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 2 KLKNLTELDLRENN---LEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLV 58
LK L L NN + LS + L++ + N + + ++ A +LE L
Sbjct: 46 TLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99
Query: 59 LSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNN 90
+S N ++ L+ L LR+L +SNN
Sbjct: 100 ISYNQ------IASLSGIEKLVNLRVLYMSNN 125
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 15/160 (9%)
Query: 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQL 109
T E + L E + L+ + L L S N K + L++L L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLAL---STNNIEKISSLSGMENLRILSL 77
Query: 110 PNCSLKVIPSFLLHQYNLKFLDLSSNKL--VGNFPTWLMQNNTNLEVLRLSNN---SFSG 164
+K I + L+ L +S N++ + + NL VL +SNN ++
Sbjct: 78 GRNLIKKIENLDAVADTLEELWISYNQIASLSGI-----EKLVNLRVLYMSNNKITNWGE 132
Query: 165 ILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLI 204
I +L + L L ++ N L +N T ++ ++
Sbjct: 133 IDKLAALDK--LEDLLLAGNPLYNDYKENNATSEYRIEVV 170
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 3 LKNLTELDLRENNLEGQLPWR------LSDLTGLKVFDISSNQLSGN-LPSVIANLTSLE 55
L +L +L+L + + S L +++S QL L +++
Sbjct: 71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129
Query: 56 YLVLSDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPN 111
L L N+ E LL + + LRL SNN L
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL---SNN-----------------PLTA 169
Query: 112 CSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---MQNNTNLEVLRLSNNSF--SGIL 166
+ V+ L ++ L L L L + N L+ L ++ N + L
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229
Query: 167 QLPKV--KHDFLRHLDISNNNL 186
L + +H L L + N L
Sbjct: 230 ALARAAREHPSLELLHLYFNEL 251
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 58/393 (14%), Positives = 110/393 (27%), Gaps = 88/393 (22%)
Query: 70 LSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH------ 123
L N + L L + N + I K+ + +++ H
Sbjct: 6 LLSAHNRAVLAQL-GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQ 64
Query: 124 ------QYNLKFLDLSSNKL----VGNFPTWLMQNNTNLEVLRLSNNSFS--GILQLPKV 171
+L+ L+L+ ++ L L+ + L++ G+ L V
Sbjct: 65 RFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124
Query: 172 KHDFLRHLDISNNNL-------IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM-- 222
R L + N+L + L + + L L S N + E
Sbjct: 125 FLR-ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL---SNNPLTAAGVAVLMEGLA 180
Query: 223 --KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280
+ L L GD + A L+ QL+ L +
Sbjct: 181 GNTSVTHLSLLHTGL-GDEGLELL--AAQLD------------------RNRQLQELNVA 219
Query: 281 NNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336
N + L +L + N LS + D+ ++
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR-----DLGGAAEGGA---- 270
Query: 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396
++ + + S + LS + + + + + R ELL
Sbjct: 271 --------RVVVSLTEGTAV--SEYWSVILSEV----QRNLNSWDR--ARVQRHLELLLR 314
Query: 397 DLRDNKF----FGRIPHQINKHSELRVLLLRGN 425
DL D++ R + E+R LL +
Sbjct: 315 DLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L LT LDL N L LP + D L LK + N+L+ LP I LT L +L L
Sbjct: 86 SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 61 DNNFQ 65
N +
Sbjct: 144 QNQLK 148
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
+L +L EL + N L LP + LT L + NQL L+SL + L
Sbjct: 110 RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Query: 62 N 62
N
Sbjct: 169 N 169
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 5e-05
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 19/162 (11%)
Query: 18 GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLT-NH 76
L L + L I NL +L+ L + +L +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 77 SNLEVLRLLKVSNNLRFKT--ENWIPTFQ------LKVLQLPNCSLKVIPSFLLHQY--- 125
NLE L L + F + P F LK L + + + + + +
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 126 -NLKFLDLSSNKLVGNFPTWL---MQNNTNLEVLRLSNNSFS 163
L+ +D+S+ L L + +L+ + + N S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 6e-04
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 19/174 (10%)
Query: 143 TWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTV----L 198
+ ++ L L++ + L + K L+ L+I + L ++ +++ L
Sbjct: 165 SPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 199 QKLMLIDISKNNFEGNIPYSI------GEMKELFLLDLSRNKFSGDLSAT--SVNGCASL 250
+KL+L ++ L L + + + + L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 251 EYLDVSENNFYG----HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVV 300
E +D+S + + L+ + +K N+ + ++K L S + +
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
++ EL L EN ++ ++ ++ L LK ++ NQ+S +P +L SL L L+
Sbjct: 76 GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 61 DN 62
N
Sbjct: 135 SN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVL 59
+L +L +L+L+ N L G + + + ++ + N++ + + + L L+ L L
Sbjct: 52 RLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109
Query: 60 SDNNFQ 65
DN
Sbjct: 110 YDNQIS 115
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVL 59
L L +L L N L+ LP + D LT LK +++NQL ++P+ LT+L+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL 162
Query: 60 SDNNFQGEFPLSLLTNHSNLEVLRL 84
S N Q P L+ + L
Sbjct: 163 STNQLQS-VPHGAFDRLGKLQTITL 186
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQG 66
+LDL+ L LT L ++ NQL V +LT L L L++N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 67 EFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPT--F----QLKVLQLPNCSLKVIPSF 120
PL + + + L+ L L N L+ +P+ F +LK L+L L+ IP+
Sbjct: 97 SLPLGVFDHLTQLDKLYLG--GNQLKS-----LPSGVFDRLTKLKELRLNTNQLQSIPAG 149
Query: 121 LLHQ-YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160
+ NL+ L LS+N+L + P L+ + L N
Sbjct: 150 AFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L L L N L LP + D LT L + NQL V LT L+ L L+
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 61 DNNFQ 65
N Q
Sbjct: 140 TNQLQ 144
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
LDL + LS + G L +L++ N + +LT+L L L NN
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97
Query: 288 IKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNF---SYLDVLLMSKNHLEGNIPVQI-NN 342
+ G+ + L L + N L +P G F + L L ++ N L+ +IP +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKS-LP--SGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 343 FRQLEILYLSENRLFGSI--ASFLNLSSIMHLYLQKN 377
L+ L LS N+L S+ +F L + + L N
Sbjct: 154 LTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVG-NF 141
+ L + + + VL +C + + L L+LS+N+L +
Sbjct: 130 QALDLKGL--RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD 187
Query: 142 PTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQN 193
+ ++Q NL++L LS N +L K+K L L + N+L T
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQ 239
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVL 59
KL LT+L L +N ++ LP + D LT L + + N+L +LP+ V LT L+ L L
Sbjct: 50 KLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELAL 107
Query: 60 SDNNFQ 65
N +
Sbjct: 108 DTNQLK 113
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
KL LT L L EN L+ LP + D LT LK + +NQL + LTSL+ + L
Sbjct: 74 KLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132
Query: 61 DN 62
N
Sbjct: 133 TN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPS-VIANLTSLEYLVL 59
KL +LT L+L N L+ LP + D LT LK +++NQL +LP V LT L+ L L
Sbjct: 74 KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRL 131
Query: 60 SDNNFQ 65
N +
Sbjct: 132 YQNQLK 137
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+L LT LDL N L LP + D LT L ++ NQL NL SL ++ L
Sbjct: 52 RLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110
Query: 61 DN 62
+N
Sbjct: 111 NN 112
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSD-LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L NL +L N L +P + D LT L D++ N L NL SL ++ L
Sbjct: 55 HLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
Query: 61 DN 62
+N
Sbjct: 114 NN 115
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.69 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.64 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.53 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.53 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.34 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.29 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.11 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.02 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.01 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.99 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.64 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.51 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.43 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.4 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.96 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.74 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.3 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.17 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.44 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.31 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-65 Score=569.91 Aligned_cols=455 Identities=32% Similarity=0.426 Sum_probs=421.8
Q ss_pred CCCCcCEEeCCCCCCcccCCc--cCCCCCCCCEEECCCCcCCccCchhc-cCCCCCCEEeCcCcccCcccChhh--hcCC
Q 042089 2 KLKNLTELDLRENNLEGQLPW--RLSDLTGLKVFDISSNQLSGNLPSVI-ANLTSLEYLVLSDNNFQGEFPLSL--LTNH 76 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~g~~p~~~--~~~l 76 (557)
++++|++|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+|++|.+++..|..+ +.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 578899999999999998888 89999999999999999998888776 789999999999999987776543 6889
Q ss_pred CCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEE
Q 042089 77 SNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVL 155 (557)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 155 (557)
++|++|++++|.+.+..+. ..+++|++|++++|.+ +.+|. ++.+++|++|++++|++++.+|..+ .++++|++|
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L 252 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLL 252 (768)
T ss_dssp TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEE
T ss_pred CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEE
Confidence 9999999999988776554 6788999999999999 55666 9999999999999999999888877 499999999
Q ss_pred EccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCee
Q 042089 156 RLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235 (557)
Q Consensus 156 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 235 (557)
++++|.+.+. .+...+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus 253 ~Ls~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 253 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp ECCSSCCEES--CCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCc--cCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 9999999887 55558899999999999999999999876679999999999999999999999999999999999999
Q ss_pred eeecCcccccCCCCCcEEeccCCccccccCccccCcc-cccceecccccccccccccccC--CCCCcEEEccCCcccCcc
Q 042089 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFTGKIKAGLLN--SHGLVVLDISNNLLSGHI 312 (557)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~--~~~L~~L~Ls~n~l~~~~ 312 (557)
.|.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 9999988778999999999999999999999999887 9999999999999999988877 789999999999999999
Q ss_pred CccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCC
Q 042089 313 PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRST 391 (557)
Q Consensus 313 p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~ 391 (557)
|..++++++|++|++++|++++.+|..++.+++|++|++++|.+++.+|..+ .+++|++|++++|++++.+|..+.+++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 9999999999999999999999999999999999999999999999888766 899999999999999999999999999
Q ss_pred CCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 392 ELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 392 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++.+++|+.||+++|+++|.+|.++.+..
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-64 Score=557.88 Aligned_cols=423 Identities=34% Similarity=0.452 Sum_probs=317.6
Q ss_pred CCCCcCEEeCCCCCCcccCCccC-CCCCCCCEEECCCCcCCccCchh---ccCCCCCCEEeCcCcccCcccChhhhcCCC
Q 042089 2 KLKNLTELDLRENNLEGQLPWRL-SDLTGLKVFDISSNQLSGNLPSV---IANLTSLEYLVLSDNNFQGEFPLSLLTNHS 77 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~ 77 (557)
++++|++|+|++|.+++.+|..+ .++++|++||+++|++++..|.. +.++++|++|++++|.+.+.+| +.+++
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~ 200 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCT
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCC
Confidence 57899999999999999888776 89999999999999999988877 7899999999999999988776 37889
Q ss_pred CCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEE
Q 042089 78 NLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLR 156 (557)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 156 (557)
+|++|++++|.+.+.++. +..+++|++|++++|.+ +.+|..+..+++|++|++++|++++.+|.. .+++|++|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~ 275 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS 275 (768)
T ss_dssp TCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEE
T ss_pred cCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEE
Confidence 999999999998876665 67888999999999999 688888999999999999999888877763 678888888
Q ss_pred ccCccccCcccCCccc-CCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcc-ccCCCCCcEEEcCCCe
Q 042089 157 LSNNSFSGILQLPKVK-HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYS-IGEMKELFLLDLSRNK 234 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 234 (557)
+++|.+++..+..+.. +++|++|++++|++++.+|..++ .+++|++|++++|.++|.+|.. ++++++|++|++++|.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 8888887664333333 47788888888887777777775 4777888888888777777765 7777777777777777
Q ss_pred eeeecCcccccCCC-CCcEEeccCCccccccCccccC--cccccceecccccccccccccccCCCCCcEEEccCCcccCc
Q 042089 235 FSGDLSATSVNGCA-SLEYLDVSENNFYGHIFPTYMN--LTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH 311 (557)
Q Consensus 235 l~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 311 (557)
+.+.+|..+. .++ +|++|++++|.+++.++..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++.
T Consensus 355 l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 355 FSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred cCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 7777776654 343 6777777777776666666554 56666677777666666666666666666677766666666
Q ss_pred cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcC
Q 042089 312 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRS 390 (557)
Q Consensus 312 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~ 390 (557)
+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++++.+|.++..+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 66666666666666666666666666666666666666666666666666544 56666666666666666666666666
Q ss_pred CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 391 TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 391 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
++|++|++++|+++|.+|.+++.+++|++|++++|+++|.+|.+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 66666666666666666666666666666666666666655543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-53 Score=457.39 Aligned_cols=453 Identities=22% Similarity=0.178 Sum_probs=383.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+.+++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++..| ..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence 478999999999998889999999999999999999999999999999999999999999996666 5699999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC--EEEccC
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE--VLRLSN 159 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~--~L~L~~ 159 (557)
+++|.+.+..+. .+..+++|++|++++|.+..+ |... .+++|++|++++|++++..|..+ ..+++|+ .|++++
T Consensus 112 L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 112 FIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNG 188 (606)
T ss_dssp CTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTT
T ss_pred ccccCcccCCcc-hhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCC
Confidence 999998754333 467899999999999999655 5444 49999999999999997666665 5899999 999999
Q ss_pred ccccCcccCCcccCCCccEEECcCCcCc-------------------------CCCchhHhhhcc--CCcEEeCCCCcCc
Q 042089 160 NSFSGILQLPKVKHDFLRHLDISNNNLI-------------------------GTLPQNMGTVLQ--KLMLIDISKNNFE 212 (557)
Q Consensus 160 n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~L~~n~l~ 212 (557)
|.+++..+..+ ....|+.|++++|... ..++...+..+. +|+.+++++|.++
T Consensus 189 n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 189 NDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 99998743333 4467888888876410 012222222222 6889999999998
Q ss_pred ccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccccc-
Q 042089 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAG- 291 (557)
Q Consensus 213 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~- 291 (557)
+..+..++.+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 877778999999999999999987 777764 67899999999999998888888889999999999999988776654
Q ss_pred ccCCCCCcEEEccCCcccCcc--CccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc--ccCCC
Q 042089 292 LLNSHGLVVLDISNNLLSGHI--PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS--FLNLS 367 (557)
Q Consensus 292 l~~~~~L~~L~Ls~n~l~~~~--p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~--~~~~~ 367 (557)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 788899999999999998766 77888999999999999999988888999999999999999999876654 33889
Q ss_pred CccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc---CCccccCCCCccEEEcCCCcccccCCccccCCCCCCEE
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR---IPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL 444 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L 444 (557)
+|++|++++|.+++..|..+..+++|++|++++|++++. .+.++..+++|++|++++|++++..|..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 999999999999988888899999999999999999763 33568889999999999999998889999999999999
Q ss_pred EccCCcCcCCcCccccccc
Q 042089 445 DLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 445 dls~N~l~g~ip~~~~~l~ 463 (557)
|+++|++++.+|..+.+++
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCC
T ss_pred ECCCCccCcCChhHhCccc
Confidence 9999999998888877665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=453.68 Aligned_cols=451 Identities=20% Similarity=0.171 Sum_probs=280.6
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..| ..++++++|++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~ 133 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLES 133 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc-chhccCCcccE
Confidence 57899999999999999899999999999999999999999999999999999999999999995433 45899999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCc-ChhhhCCCCCc--EEEccCCcCcCCCcHHHhhcCCCCCEEEcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI-PSFLLHQYNLK--FLDLSSNKLVGNFPTWLMQNNTNLEVLRLS 158 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 158 (557)
|++++|.+.+.... .+..+++|++|++++|.+..+ |..+..+++|+ +|++++|.+++..|..+ ...+|+.|+++
T Consensus 134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~ 210 (606)
T 3t6q_A 134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFG 210 (606)
T ss_dssp EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECT
T ss_pred EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccC
Confidence 99999998764333 234589999999999999665 66789999999 99999999997666543 34555555555
Q ss_pred Ccccc---------------------Ccc--cCC---cccC--CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc
Q 042089 159 NNSFS---------------------GIL--QLP---KVKH--DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN 210 (557)
Q Consensus 159 ~n~l~---------------------~~~--~~~---~~~~--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 210 (557)
+|... +.. .+. +..+ .+|+.|++++|.+++..+..+ ..+++|+.|++++|.
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATH 289 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-ccccCCCEEeccCCc
Confidence 44300 000 000 0000 145555555555553322223 235555555555555
Q ss_pred CcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcc-ccCcccccceecccccccccc-
Q 042089 211 FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT-YMNLTQLRGLYLKNNHFTGKI- 288 (557)
Q Consensus 211 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~- 288 (557)
++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++.. +..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 55 455555555555555555555552222 22344555555555555555444332 455555555555555555443
Q ss_pred -cccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh-hccCCCCcEEEccCccccccccccc-C
Q 042089 289 -KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLEILYLSENRLFGSIASFL-N 365 (557)
Q Consensus 289 -~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~-~ 365 (557)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+ .
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 444555555555555555555555555555555555555555555444332 4555555555555555555444433 4
Q ss_pred CCCccEEEccCCccccc---chhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCC
Q 042089 366 LSSIMHLYLQKNALSGQ---IPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLR 442 (557)
Q Consensus 366 ~~~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~ 442 (557)
+++|++|++++|++++. .+..+..+++|++|++++|++++..|.+++.+++|+.|+|++|++++..|..+..++.|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 55555555555555442 12345555555555555555555555555555555555555555555555555555555
Q ss_pred EEEccCCcCcCCcCcccc
Q 042089 443 ILDLSHNKLNGSIPSCFA 460 (557)
Q Consensus 443 ~Ldls~N~l~g~ip~~~~ 460 (557)
.||+++|++++.+|..+.
T Consensus 527 ~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLP 544 (606)
T ss_dssp EEECCSSCCCCCCGGGHH
T ss_pred EEECcCCcccccCHhhcc
Confidence 555555555555444443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-51 Score=450.77 Aligned_cols=447 Identities=23% Similarity=0.231 Sum_probs=351.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+++++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|+|++|.++ .+|...++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 57999999999999877788999999999999999999998999999999999999999998 67766789999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCcCcCCCcHHHh-hcCCCCCEEEccCcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLM-QNNTNLEVLRLSNNS 161 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~ 161 (557)
+++|.+.+ ++...+..+++|++|++++|.+ +..|..+..+++|++|++++|++++..+..+. ..+++|++|++++|.
T Consensus 104 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99998864 4444678899999999999999 55677788999999999999999976666542 256899999999999
Q ss_pred ccCcccCCcccC---------------------------CCccEEECcCCcCcCCCchhHhhhcc--CCcEEeCCCCcCc
Q 042089 162 FSGILQLPKVKH---------------------------DFLRHLDISNNNLIGTLPQNMGTVLQ--KLMLIDISKNNFE 212 (557)
Q Consensus 162 l~~~~~~~~~~~---------------------------~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~ 212 (557)
+++..+..+..+ ++|+.|++++|.+++..|..+.. ++ +|+.|++++|.++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcC
Confidence 887643333222 56777888888887766666643 44 4888888888888
Q ss_pred ccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc-----cCc----cccCcccccceeccccc
Q 042089 213 GNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-----IFP----TYMNLTQLRGLYLKNNH 283 (557)
Q Consensus 213 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~----~~~~l~~L~~L~L~~n~ 283 (557)
+..|.+++.+++|++|++++|.+.+..+.. +..+++|++|++++|...+. +|. .+..+++|++|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 777788888888888888888887555443 46778888888877654432 222 56677888888888888
Q ss_pred ccccccccccCCCCCcEEEccCCcccCcc--CccccC--CCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc
Q 042089 284 FTGKIKAGLLNSHGLVVLDISNNLLSGHI--PCWIGN--FSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359 (557)
Q Consensus 284 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--p~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (557)
+++..+..+..+++|++|++++|.+.... +..+.. .+.|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 88777777888888888888887654321 122222 24778888888888877788888888888888888888776
Q ss_pred ccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc--ccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 360 IAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF--GRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 360 i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
+|. +..+++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|.++..+++|++|++++|++++..|..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 652 337888888888888888777778888888888888888776 5677888888888888888888887667778
Q ss_pred cCCCCCCEEEccCCcCcCC
Q 042089 436 CQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 436 ~~l~~L~~Ldls~N~l~g~ 454 (557)
..+++|++|++++|++++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp TTCTTCCEEECCSSCCGGG
T ss_pred ccccccCEEeCCCCCcccc
Confidence 8888888888888888753
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-52 Score=449.36 Aligned_cols=446 Identities=20% Similarity=0.153 Sum_probs=376.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|+|++|.+++..| ..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEE
Confidence 579999999999998888899999999999999999998889999999999999999999996656 5689999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCC----CCEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN----LEVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L 157 (557)
+++|.+.+..+. .+..+.+|++|++++|.+. .+|..++.+++|++|++++|++++..|..+ +.+++ +++|++
T Consensus 111 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEEC
T ss_pred ccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeec
Confidence 999998754433 4788999999999999994 689999999999999999999997666544 34544 458999
Q ss_pred cCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeC-------------------------------
Q 042089 158 SNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDI------------------------------- 206 (557)
Q Consensus 158 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L------------------------------- 206 (557)
++|.+++..+..+. ..+|+.|++++|.+++.........++.++.+++
T Consensus 189 ~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 99999876433333 3489999999998874333333345666666555
Q ss_pred --CCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccc
Q 042089 207 --SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHF 284 (557)
Q Consensus 207 --~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 284 (557)
..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred ccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 56677777776 888999999999999986 566 356788999999999999 6777 44 899999999999966
Q ss_pred cccccccccCCCCCcEEEccCCcccCc--cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc-
Q 042089 285 TGKIKAGLLNSHGLVVLDISNNLLSGH--IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA- 361 (557)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~- 361 (557)
.+.+ .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence 5544 567889999999999998876 48888899999999999999885 66888899999999999999988776
Q ss_pred -cccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccccCCccccCCC
Q 042089 362 -SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ 439 (557)
Q Consensus 362 -~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 439 (557)
.+..+++|++|++++|++++..|..+.++++|++|++++|++++ .+|.+++.+++|++|+|++|++++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 34489999999999999998899999999999999999999988 4788899999999999999999998899999999
Q ss_pred CCCEEEccCCcCcCCcCccccccc
Q 042089 440 KLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 440 ~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+|+.|++++|++++.+|..+++++
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCT
T ss_pred cCCEEECCCCcCCCcCHHHccCCC
Confidence 999999999999998888877665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-50 Score=441.48 Aligned_cols=457 Identities=24% Similarity=0.246 Sum_probs=376.2
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+++ +|+..++++++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCE
Confidence 46899999999999999999999999999999999999996656689999999999999999984 55466899999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hh--hCCCCCcEEEccCCcCcCCCcHHHhhcC---------
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FL--LHQYNLKFLDLSSNKLVGNFPTWLMQNN--------- 149 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--------- 149 (557)
|++++|.+.+..+. .+..+++|++|++++|.+..++. .+ ..+++|++|++++|++++..|..+. .+
T Consensus 126 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~ 203 (680)
T 1ziw_A 126 LDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLN 203 (680)
T ss_dssp EECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECT
T ss_pred EECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh-hhhhhhhhhcc
Confidence 99999998765443 46788999999999999966654 33 3568999999999999876665442 33
Q ss_pred ------------------CCCCEEEccCccccCcccCCcccCC--CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 150 ------------------TNLEVLRLSNNSFSGILQLPKVKHD--FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 150 ------------------~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYN 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCC
Confidence 5678888888888876544555544 599999999999977666665 5899999999999
Q ss_pred cCcccCCccccCCCCCcEEEcCCCeeeee--------cCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGD--------LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 210 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
.+++..|.++..+++|++|++++|...+. +....+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 99999999999999999999998765432 2223456789999999999999998888899999999999999
Q ss_pred ccccccc--cccccC--CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccc
Q 042089 282 NHFTGKI--KAGLLN--SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRL 356 (557)
Q Consensus 282 n~~~~~~--~~~l~~--~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 356 (557)
|.+.+.. +..+.. .++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++++|++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 8765332 122222 3589999999999999889999999999999999999987666 6788899999999999998
Q ss_pred cccccccc-CCCCccEEEccCCccc--ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCC-
Q 042089 357 FGSIASFL-NLSSIMHLYLQKNALS--GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP- 432 (557)
Q Consensus 357 ~~~i~~~~-~~~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip- 432 (557)
.+..+..+ .+++|++|++++|.+. +.+|..+.++++|++|++++|++++..|.+++.+++|++|+|++|++++..+
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence 87666555 7889999999999886 5678888899999999999999987777788889999999999999886422
Q ss_pred -------ccccCCCCCCEEEccCCcCcCCcCc-cccccc
Q 042089 433 -------IALCQLQKLRILDLSHNKLNGSIPS-CFANVL 463 (557)
Q Consensus 433 -------~~l~~l~~L~~Ldls~N~l~g~ip~-~~~~l~ 463 (557)
..+..+++|++|++++|+++ .||. .|+++.
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~ 560 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLF 560 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccccc
Confidence 23688889999999999998 5664 455554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=440.83 Aligned_cols=444 Identities=17% Similarity=0.122 Sum_probs=342.7
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+ ..++++++|++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 132 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKK 132 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc-cccCCCCCCCE
Confidence 57899999999999998889999999999999999999998889999999999999999999985444 45899999999
Q ss_pred EEecCccCcc-cccCCCCCCCCcccEEECCCCCCCCc-ChhhhCCCCC----cEEEccCCcCcCCCcHHHhhcCCCCCEE
Q 042089 82 LRLLKVSNNL-RFKTENWIPTFQLKVLQLPNCSLKVI-PSFLLHQYNL----KFLDLSSNKLVGNFPTWLMQNNTNLEVL 155 (557)
Q Consensus 82 L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~i-p~~l~~~~~L----~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 155 (557)
|++++|.+.+ .+|. .+..+++|++|++++|.+..+ |..+..+++| ++|++++|.++ .++...+ ...+|++|
T Consensus 133 L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L 209 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHEL 209 (606)
T ss_dssp EECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEE
T ss_pred EeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeee
Confidence 9999998875 3343 577899999999999999554 4555555544 48999999888 4455554 34488888
Q ss_pred EccCccccCcc-cCCcccCCC--------------------------------ccEEEC-cCCcCcCCCchhHhhhccCC
Q 042089 156 RLSNNSFSGIL-QLPKVKHDF--------------------------------LRHLDI-SNNNLIGTLPQNMGTVLQKL 201 (557)
Q Consensus 156 ~L~~n~l~~~~-~~~~~~~~~--------------------------------L~~L~L-~~n~l~~~~~~~~~~~l~~L 201 (557)
++++|.+.+.. +..+..++. ++.+++ ..+.+.+.+|. + ..+++|
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L 287 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANV 287 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTC
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-c-ccCCCC
Confidence 88888765210 001112222 334444 55666666666 3 457888
Q ss_pred cEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 202 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSR 359 (606)
T ss_dssp SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCS
T ss_pred CEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcC
Confidence 88888888876 455 777888888888888888 57773 2 6788888888888655444 556778888888888
Q ss_pred cccccc--ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGK--IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 358 (557)
|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 888765 36777788888888888888775 55777888888888888888887766 677788888888888888887
Q ss_pred cccccc-CCCCccEEEccCCcccc-cchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcccc
Q 042089 359 SIASFL-NLSSIMHLYLQKNALSG-QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALC 436 (557)
Q Consensus 359 ~i~~~~-~~~~L~~L~L~~n~l~~-~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~ 436 (557)
.+|..+ .+++|++|++++|++++ .+|..+..+++|++|++++|++++..|.+++.+++|+.|+|++|++++.+|..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 766655 77888888888888887 3677788888888888888888888888888888888888888888887788888
Q ss_pred CCCCCCEEEccCCcCcCCcCccccc
Q 042089 437 QLQKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 437 ~l~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
.+++|+.||+++|+++ .+|..+..
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGG
T ss_pred CCCcCCEEECCCCcCc-ccCHhHhh
Confidence 8888888888888887 56665544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=426.53 Aligned_cols=440 Identities=22% Similarity=0.187 Sum_probs=345.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
+++++|++++|.+++..+..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++ +|+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 479999999999998888899999999999999999998888899999999999999999985 4546799999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC----CEEEc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL----EVLRL 157 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L----~~L~L 157 (557)
+++|.+.... ...+..+.+|++|++++|.+. .+|..+..+++|++|++++|++++..|..+ +.+++| +.+++
T Consensus 107 L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEEC
T ss_pred ccccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhccc
Confidence 9999876543 334788999999999999995 579999999999999999999997666655 477787 89999
Q ss_pred cCccccCcccCCcccCCCccEEECcCCc----------------------------------------------------
Q 042089 158 SNNSFSGILQLPKVKHDFLRHLDISNNN---------------------------------------------------- 185 (557)
Q Consensus 158 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~---------------------------------------------------- 185 (557)
++|.+++..+..+.. .+|+.|++++|.
T Consensus 185 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 999998774433333 368888877762
Q ss_pred ------CcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 186 ------LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 186 ------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
+.+.+|..+. .+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.
T Consensus 264 l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCB
T ss_pred hhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCc
Confidence 2333344443 3677777777777776 567677777 7777777777776 5554 246777778887777
Q ss_pred cccccCccccCcccccceecccccccccc--cccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKI--KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 337 (557)
+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.+..+
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc
Confidence 7655544 56778888888888777543 56677778888888888877765444 7778888888888888776655
Q ss_pred -hhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCccc-ccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 338 -VQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALS-GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 338 -~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
..+..+++|++|++++|.+.+..|..+ .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|.+++.+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 457778888888888888877666555 6788888888888876 5677778888888888888888887778888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8888888888888877777778888888888888888877764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=444.61 Aligned_cols=442 Identities=22% Similarity=0.193 Sum_probs=299.5
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
.++|++|+|++|.+++..|..|+++++|++|||++|...+.+ |..|.++++|++|+|++|.+++..| ..+.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence 368999999999999989999999999999999999777777 7889999999999999999997666 56999999999
Q ss_pred EEecCccCcccccCC-CCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcC--CCCCEEE
Q 042089 82 LRLLKVSNNLRFKTE-NWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNN--TNLEVLR 156 (557)
Q Consensus 82 L~l~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~ 156 (557)
|++++|.+.+..+.. .+..+++|++|++++|.+..+ +..++++++|++|++++|.+++..+..+. .+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEE
Confidence 999999988765543 477899999999999999443 46799999999999999999988887764 55 8999999
Q ss_pred ccCccccCcccCCcccCC------CccEEECcCCcCcCCCchhHhhhc--------------------------------
Q 042089 157 LSNNSFSGILQLPKVKHD------FLRHLDISNNNLIGTLPQNMGTVL-------------------------------- 198 (557)
Q Consensus 157 L~~n~l~~~~~~~~~~~~------~L~~L~L~~n~l~~~~~~~~~~~l-------------------------------- 198 (557)
++.|.+.+..+.....+. .|+.|++++|.+++.++..+....
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 999999887544444444 399999999998888777665321
Q ss_pred -----cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccc
Q 042089 199 -----QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ 273 (557)
Q Consensus 199 -----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (557)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 345555555555555555555555555555555555553322 22344555555555555555544555555555
Q ss_pred ccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccC
Q 042089 274 LRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353 (557)
Q Consensus 274 L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 353 (557)
|++|++++|.+++..+..+..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.+++++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~ 410 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSE 410 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeeccc
Confidence 55555555555544444455555555555555555421 12445555555555554 23322 34455666666
Q ss_pred cccccccc-c-ccCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCCCccc-----ccCCccccCCCCccEEEcCCC
Q 042089 354 NRLFGSIA-S-FLNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRDNKFF-----GRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 354 n~l~~~i~-~-~~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~L~~N 425 (557)
|.+++... . ...+++|++|++++|++++..+. .+..+++|++|++++|.++ +..|..+..+++|+.|+|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 66554211 1 12566666666666666644332 2344566666666666665 333445566666777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
++++..|..+..+++|+.|||++|++++..|
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred cccccChhHccchhhhheeECCCCCCCccCh
Confidence 7776666666667777777777777665433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-48 Score=415.23 Aligned_cols=442 Identities=22% Similarity=0.190 Sum_probs=332.0
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
.++++-++.+++ .+|..+. +++++||+++|++++..+..|.++++|++|+|++|.+++ ++...+.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCc
Confidence 356777777776 5777664 589999999999998888899999999999999999985 555679999999999999
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcC-CCcHHHhhcCCCCCEEEccCcccc
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~ 163 (557)
+|.+... +...+..+.+|++|++++|.+..+|. .++.+++|++|++++|.+++ .+|..+ .++++|++|++++|.++
T Consensus 85 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCC
T ss_pred CCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccc
Confidence 9988754 44467889999999999999977775 68999999999999999986 578876 48999999999999998
Q ss_pred CcccCCcccCCCc----cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc-cCCccccCCC---------------
Q 042089 164 GILQLPKVKHDFL----RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG-NIPYSIGEMK--------------- 223 (557)
Q Consensus 164 ~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~--------------- 223 (557)
+..+..+..+++| +.+++++|.+++..|..+. ..+|+.|++++|.... .++..+..++
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 7644445566666 8999999999866665553 3378999888873221 1111112222
Q ss_pred -----------------CCcEEEcCCC-eeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc
Q 042089 224 -----------------ELFLLDLSRN-KFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT 285 (557)
Q Consensus 224 -----------------~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 285 (557)
.++.++++.+ .+.+.++.. +..+++|++|++++|.+. .+|..+..+ +|++|++++|.++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc
Confidence 2334444444 444444433 356777888888888776 466666666 7888888888777
Q ss_pred ccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc--chhhccCCCCcEEEccCcccccccccc
Q 042089 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI--PVQINNFRQLEILYLSENRLFGSIASF 363 (557)
Q Consensus 286 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~i~~~ 363 (557)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.+
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 4554 3567788888888877766655 56777888888888777543 667777788888888888777655555
Q ss_pred cCCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc-ccCCccccCCCCC
Q 042089 364 LNLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ-GEIPIALCQLQKL 441 (557)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~ip~~l~~l~~L 441 (557)
..+++|++|++++|.+.+..| ..+.++++|++|++++|++++..|..+..+++|++|++++|+++ +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 577788888888888776655 45677788888888888887777777777888888888888877 5677777788888
Q ss_pred CEEEccCCcCcCCcCccccccc
Q 042089 442 RILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 442 ~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+.||+++|++++..|..+++++
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCT
T ss_pred CEEECCCCccccCChhhhhccc
Confidence 8888888888777777666544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=431.23 Aligned_cols=340 Identities=18% Similarity=0.195 Sum_probs=292.4
Q ss_pred CCCCCCcChhhhCCCCCcEEEccCCcCcCC-----------------CcHHHh-hcCCCCCEEEccCccccCcccCCccc
Q 042089 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGN-----------------FPTWLM-QNNTNLEVLRLSNNSFSGILQLPKVK 172 (557)
Q Consensus 111 ~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~ 172 (557)
.|.+..||..++++++|++|++++|+++|. +|..+. .++++|++|++++|.+.+..+..+..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456644999999999999999999999985 887752 27999999999999999886666778
Q ss_pred CCCccEEECcCCc-CcC-CCchhHhhh-----ccCCcEEeCCCCcCcccCCc--cccCCCCCcEEEcCCCeeeeecCccc
Q 042089 173 HDFLRHLDISNNN-LIG-TLPQNMGTV-----LQKLMLIDISKNNFEGNIPY--SIGEMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 173 ~~~L~~L~L~~n~-l~~-~~~~~~~~~-----l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
+++|++|++++|+ ++| .+|..++.. +++|++|++++|.++ .+|. .++++++|++|++++|.+.|.+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 9999999999998 888 889888641 389999999999999 8888 89999999999999999999998 4
Q ss_pred ccCCCCCcEEeccCCccccccCccccCccc-ccceecccccccccccccccCCC--CCcEEEccCCcccCccCcccc---
Q 042089 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQ-LRGLYLKNNHFTGKIKAGLLNSH--GLVVLDISNNLLSGHIPCWIG--- 317 (557)
Q Consensus 244 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~l~--- 317 (557)
+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 567899999999999998 78888999999 999999999998 7888777655 899999999999999998888
Q ss_pred ----CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-C-C-------CCccEEEccCCcccccch
Q 042089 318 ----NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-N-L-------SSIMHLYLQKNALSGQIP 384 (557)
Q Consensus 318 ----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~-~-------~~L~~L~L~~n~l~~~~p 384 (557)
.+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|... . . ++|++|++++|+++ .+|
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 7889999999999999544444566899999999999998 555432 2 2 28999999999999 788
Q ss_pred hhhh--cCCCCcEEeCCCCcccccCCccccCCCCccEEEc------CCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 385 STLL--RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL------RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 385 ~~l~--~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L------~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+. .+++|++|++++|++++ +|.++..+++|+.|+| ++|++.+.+|..+..+++|+.||+++|++ +.||
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 8887 89999999999999987 8999999999999999 56788899999999999999999999999 7888
Q ss_pred ccc
Q 042089 457 SCF 459 (557)
Q Consensus 457 ~~~ 459 (557)
..+
T Consensus 583 ~~~ 585 (636)
T 4eco_A 583 EKI 585 (636)
T ss_dssp SCC
T ss_pred HhH
Confidence 754
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-50 Score=436.27 Aligned_cols=431 Identities=19% Similarity=0.233 Sum_probs=331.3
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcC------Cc------cCchhccCCCCCCEEeCcCcccCcccChh
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQL------SG------NLPSVIANLTSLEYLVLSDNNFQGEFPLS 71 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~ 71 (557)
.+++.|+|++++++|.+|++++++++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 3678888888888888888888899999999988876 23 334333 34444 555555555544432
Q ss_pred hhcCC------------------CCCcEEEec--CccCcccccCCCCCCCCcccEEECCCCCCCC---------------
Q 042089 72 LLTNH------------------SNLEVLRLL--KVSNNLRFKTENWIPTFQLKVLQLPNCSLKV--------------- 116 (557)
Q Consensus 72 ~~~~l------------------~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--------------- 116 (557)
....+ ..++.+.+. .|.+++ +|. .+..+++|++|++++|.+..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchh
Confidence 11000 011111111 334444 444 35666677777777777744
Q ss_pred ---cChhhh--CCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc-ccC-cccCCccc------CCCccEEECcC
Q 042089 117 ---IPSFLL--HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS-FSG-ILQLPKVK------HDFLRHLDISN 183 (557)
Q Consensus 117 ---ip~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~------~~~L~~L~L~~ 183 (557)
+|..++ ++++|++|++++|++.+.+|..+. ++++|++|++++|. ++| ..+..+.. +++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 787777 888888888888888888887664 78888888888887 776 42222333 37889999999
Q ss_pred CcCcCCCch--hHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCC-CcEEeccCCcc
Q 042089 184 NNLIGTLPQ--NMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCAS-LEYLDVSENNF 260 (557)
Q Consensus 184 n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~l 260 (557)
|+++ .+|. .++ .+++|+.|++++|.++|.+| .++.+++|++|++++|.+. .+|..+ ..+++ |++|++++|.+
T Consensus 315 n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 315 NNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF-CGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS-EEECTTCCEEECCSSCC
T ss_pred CcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh-hhhcccCcEEEccCCcC
Confidence 9888 8887 665 58899999999999998888 8889999999999999988 787764 56788 99999999998
Q ss_pred ccccCccccCcc--cccceeccccccccccccccc-------CCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 261 YGHIFPTYMNLT--QLRGLYLKNNHFTGKIKAGLL-------NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 261 ~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~l~-------~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
+ .+|..+..++ +|++|++++|.+++.+|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 8 7777776654 899999999999988888887 77799999999999985434445668999999999999
Q ss_pred CCCCcchhhcc--------CCCCcEEEccCccccccccc-cc--CCCCccEEEccCCcccccchhhhhcCCCCcEEeC--
Q 042089 332 LEGNIPVQINN--------FRQLEILYLSENRLFGSIAS-FL--NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL-- 398 (557)
Q Consensus 332 l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~i~~-~~--~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L-- 398 (557)
++ .+|..+.. +++|++|++++|+++ .+|. +. .+++|++|++++|++++ +|..+.++++|++|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 98 55654432 238999999999998 4554 43 78999999999999997 8999999999999999
Q ss_pred ----CCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 399 ----RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 399 ----~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
++|++.+.+|.+++.+++|++|+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 56888999999999999999999999999 68998876 89999999999887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=431.28 Aligned_cols=448 Identities=22% Similarity=0.218 Sum_probs=355.4
Q ss_pred CCCCcCEEeCCCCCCcccC-CccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccCh-hhhcCCCCC
Q 042089 2 KLKNLTELDLRENNLEGQL-PWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPL-SLLTNHSNL 79 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~-~~~~~l~~L 79 (557)
++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|. .++.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 6889999999999877777 78899999999999999999999999999999999999999999987664 348899999
Q ss_pred cEEEecCccCcccccCCCCCCCCcccEEECCCCCC-CCcChhhhCC--CCCcEEEccCCcCcCCCcHHHhhcCCC-----
Q 042089 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL-KVIPSFLLHQ--YNLKFLDLSSNKLVGNFPTWLMQNNTN----- 151 (557)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~ip~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~l~~----- 151 (557)
++|++++|.+.+..+...+..+++|++|++++|.+ +..|..+..+ ++|+.|+++.|.+.+..|..+. .+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~ 204 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNM 204 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccC
Confidence 99999999998766656678999999999999999 6677777776 8899999999999887776543 4444
Q ss_pred -CCEEEccCccccCcccCC------------------------------------cc--cCCCccEEECcCCcCcCCCch
Q 042089 152 -LEVLRLSNNSFSGILQLP------------------------------------KV--KHDFLRHLDISNNNLIGTLPQ 192 (557)
Q Consensus 152 -L~~L~L~~n~l~~~~~~~------------------------------------~~--~~~~L~~L~L~~n~l~~~~~~ 192 (557)
|+.|++++|.+++..... +. ..++|+.|++++|.+.+..+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 899999998765432111 01 136899999999999866666
Q ss_pred hHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcc
Q 042089 193 NMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT 272 (557)
Q Consensus 193 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (557)
.+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 285 ~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 664 58999999999999998889999999999999999999974444 4557899999999999999887777889999
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC-cchhhccCCCCcEEEc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN-IPVQINNFRQLEILYL 351 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L 351 (557)
+|++|++++|.+++. + .+++|+.|++++|.++ .+|.. ...++.|++++|++++. .+..+..+++|+.|++
T Consensus 363 ~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 363 KLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 999999999998742 2 2678899999999887 44543 45677888888887764 3334557778888888
Q ss_pred cCccccccccc--ccCCCCccEEEccCCccc-----ccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 352 SENRLFGSIAS--FLNLSSIMHLYLQKNALS-----GQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 352 ~~n~l~~~i~~--~~~~~~L~~L~L~~n~l~-----~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
++|++++..+. ...+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|+.|+|++
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 88887764433 225677788888888776 33445567777788888888888777777777778888888888
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
|++++..|..+. ++|+.||+++|+++|.+|..+.++.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 887765555554 6777888888888777777665544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-48 Score=412.80 Aligned_cols=441 Identities=19% Similarity=0.145 Sum_probs=303.4
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+|++|.+++ ++...++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence 478888888888887777888888888888888888887777888888888888888888874 4445678888888888
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCC-CCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCS-LKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+++|.+.+......+..+++|++|++++|. ++.+| ..+..+++|++|++++|++++.+|..+. ++++|++|+++.|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCc
Confidence 888877653223356677788888888887 46666 4677788888888888888776766653 66666667666666
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCC--chhHhhhccCCcEEeCCCCcCcccCC----ccccCCCCCcEEEcCCCee
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTL--PQNMGTVLQKLMLIDISKNNFEGNIP----YSIGEMKELFLLDLSRNKF 235 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l 235 (557)
+..........+++|++|++++|++++.. |..+...+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 54332111224566666666666666421 22222234556666666655544322 2223445555555555554
Q ss_pred eeecC--------------------------c--------ccccCCCCCcEEeccCCccccccCccc-cCcccccceecc
Q 042089 236 SGDLS--------------------------A--------TSVNGCASLEYLDVSENNFYGHIFPTY-MNLTQLRGLYLK 280 (557)
Q Consensus 236 ~~~~~--------------------------~--------~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 280 (557)
.+... . .......+|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 43100 0 00122356777777777765 455544 467788888888
Q ss_pred ccccccccc---ccccCCCCCcEEEccCCcccCccC--ccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 281 NNHFTGKIK---AGLLNSHGLVVLDISNNLLSGHIP--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 281 ~n~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~p--~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
+|.+++.+| ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 888877653 336677788888888888776432 45677788888888888877 567777777888888888887
Q ss_pred cccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 356 LFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 356 l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
+++ +|... .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. .+.+++|++|+|++|++++.+|..+
T Consensus 422 l~~-l~~~~-~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 422 IRV-VKTCI-PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CSC-CCTTS-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccc-ccchh-cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 763 23222 257888888888887643 46778888888888886 6665 4567888888888888888777778
Q ss_pred cCCCCCCEEEccCCcCcCCcC
Q 042089 436 CQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 436 ~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+++|+.||+++|+++|.+|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 888888888888888887776
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=404.93 Aligned_cols=431 Identities=22% Similarity=0.214 Sum_probs=328.3
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..| ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence 68999999999 6888777 899999999999998888999999999999999999996656 5689999999999999
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC--CEEEccCccc
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL--EVLRLSNNSF 162 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~~n~l 162 (557)
|.+. .+|.. .+.+|++|++++|.+. .+|..++.+++|++|++++|++++. . +..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccc
Confidence 9987 45554 7889999999999994 4789999999999999999999862 2 3478888 9999999998
Q ss_pred --cCcccCCcccCC-CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc-------CcccCCccccCCCCCcEEEcCC
Q 042089 163 --SGILQLPKVKHD-FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN-------FEGNIPYSIGEMKELFLLDLSR 232 (557)
Q Consensus 163 --~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~L~~ 232 (557)
.+..+..+..+. ....+++++|.+.+.++......+++|+.+++++|. +.+.+| .++.+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 444322222222 233566777777766666555556777777777765 454444 556666666666655
Q ss_pred CeeeeecCccccc--CCCCCcEEeccCCccccccCccc-----cCccc--------------------------ccceec
Q 042089 233 NKFSGDLSATSVN--GCASLEYLDVSENNFYGHIFPTY-----MNLTQ--------------------------LRGLYL 279 (557)
Q Consensus 233 n~l~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~--------------------------L~~L~L 279 (557)
|.+.+..+..... .+++|++|++++|.+.|.+|..+ ..+++ |+.|++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 5554332211110 12355555665555555555554 44444 455555
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCC--CcchhhccCCCCcEEEccCcccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEILYLSENRLF 357 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 357 (557)
++|.+.+.. ....+++|++|++++|.+++.+|.+++.+++|++|++++|++++ .+|..+..+++|++|++++|.++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 555443211 12567889999999999998888889999999999999999987 56778889999999999999998
Q ss_pred ccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc-
Q 042089 358 GSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA- 434 (557)
Q Consensus 358 ~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~- 434 (557)
+.+|. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.++..+++|++|++++|+++ .+|..
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence 76664 34788999999999999888877664 68999999999997 88888888999999999999998 56665
Q ss_pred ccCCCCCCEEEccCCcCcCCcC
Q 042089 435 LCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 435 l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+++|+.|++++|++++..+
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hccCCcccEEECcCCCCcccCC
Confidence 8889999999999999987654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-47 Score=405.12 Aligned_cols=439 Identities=17% Similarity=0.173 Sum_probs=340.3
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
|+...+.+.+++.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.+++..| ..+.++++|++|
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEE
Confidence 556667888999988 6787765 799999999999999889999999999999999999996555 568999999999
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNN 160 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 160 (557)
++++|.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|...+.++++|++|++++|
T Consensus 80 ~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 80 DLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999998765443 4678899999999999995 457789999999999999999666777655569999999999999
Q ss_pred cccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccC--C-ccccCCCCCcEEEcCCCeeee
Q 042089 161 SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNI--P-YSIGEMKELFLLDLSRNKFSG 237 (557)
Q Consensus 161 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~ 237 (557)
.+++..+..+..+++|++|+++.|.+. .+|..+...+++|+.|++++|.+++.. | .....+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 999876566778999999999999876 677777667899999999999998642 2 223567899999999999986
Q ss_pred ecCccc---ccCCCCCcEEeccCCcccccc------CccccCcccccceeccccccccc-----ccccccCCCCCcEEEc
Q 042089 238 DLSATS---VNGCASLEYLDVSENNFYGHI------FPTYMNLTQLRGLYLKNNHFTGK-----IKAGLLNSHGLVVLDI 303 (557)
Q Consensus 238 ~~~~~~---~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~~~~~-----~~~~l~~~~~L~~L~L 303 (557)
..+... ...+++|+.+++++|.+.+.. ...+..+.+++.+.+.++.+... ++..+....+|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 554432 346789999999999887632 12345667788888877765432 1111223467888888
Q ss_pred cCCcccCccCccc-cCCCCCcEEEcCCCcCCCCcch---hhccCCCCcEEEccCcccccccc--c-ccCCCCccEEEccC
Q 042089 304 SNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPV---QINNFRQLEILYLSENRLFGSIA--S-FLNLSSIMHLYLQK 376 (557)
Q Consensus 304 s~n~l~~~~p~~l-~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~i~--~-~~~~~~L~~L~L~~ 376 (557)
++|.++ .+|..+ ..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ . +..+++|++|++++
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 888776 566655 4678888888888888876643 36677888888888888765432 2 33678888888888
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|+.||+++|+++ .||
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred CCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence 8887 57777777888888888888875 344333 257888888888887643 46778888888888887 676
Q ss_pred c
Q 042089 457 S 457 (557)
Q Consensus 457 ~ 457 (557)
.
T Consensus 468 ~ 468 (549)
T 2z81_A 468 D 468 (549)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=419.38 Aligned_cols=415 Identities=19% Similarity=0.205 Sum_probs=332.8
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEEC-CCCcCCccCchhc----------------------------------
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDI-SSNQLSGNLPSVI---------------------------------- 48 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~l---------------------------------- 48 (557)
.+++.|+|++++++|.+|+.|+++++|++||| ++|.++|..|..-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46899999999999999999999999999999 8888877643221
Q ss_pred -----------------cCCCCCCEEeCcC--cccCcccChhhhcCCCCCcEEEecCccCccc-----------------
Q 042089 49 -----------------ANLTSLEYLVLSD--NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR----------------- 92 (557)
Q Consensus 49 -----------------~~l~~L~~L~Ls~--n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~----------------- 92 (557)
.....++.+.+.. |.++| +|. .++++++|++|++++|.+++.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1222344444444 88887 896 489999999999999999882
Q ss_pred ccCCCCC--CCCcccEEECCCCCC-CCcChhhhCCCCCcEEEccCCc-CcC-CCcHHHhhcCC-------CCCEEEccCc
Q 042089 93 FKTENWI--PTFQLKVLQLPNCSL-KVIPSFLLHQYNLKFLDLSSNK-LVG-NFPTWLMQNNT-------NLEVLRLSNN 160 (557)
Q Consensus 93 ~~~~~~~--~~~~L~~L~L~~n~l-~~ip~~l~~~~~L~~L~Ls~n~-l~~-~~p~~~~~~l~-------~L~~L~L~~n 160 (557)
+|.. +. .+++|++|++++|.+ +.+|..++.+++|++|++++|+ ++| .+|..+. +++ +|++|++++|
T Consensus 481 iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSS
T ss_pred CChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCC
Confidence 5554 44 899999999999997 9999999999999999999998 998 8998764 454 9999999999
Q ss_pred cccCcccC--CcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCC-CcEEEcCCCeeee
Q 042089 161 SFSGILQL--PKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKE-LFLLDLSRNKFSG 237 (557)
Q Consensus 161 ~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 237 (557)
.++.. +. .+..+++|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+.
T Consensus 559 ~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLEEF-PASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCCBC-CCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred cCCcc-CChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 99943 22 3568999999999999999 888 554 5899999999999999 89999999999 999999999998
Q ss_pred ecCcccccCCC--CCcEEeccCCccccccCccc---c--Ccccccceecccccccccccccc-cCCCCCcEEEccCCccc
Q 042089 238 DLSATSVNGCA--SLEYLDVSENNFYGHIFPTY---M--NLTQLRGLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLS 309 (557)
Q Consensus 238 ~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~~l-~~~~~L~~L~Ls~n~l~ 309 (557)
.+|..+ ..++ +|+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++
T Consensus 633 ~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 YIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 777654 3443 49999999999998766432 2 3458999999999999 556554 47899999999999999
Q ss_pred CccCccccCC--------CCCcEEEcCCCcCCCCcchhhc--cCCCCcEEEccCccccccccc-ccCCCCccEEEccCCc
Q 042089 310 GHIPCWIGNF--------SYLDVLLMSKNHLEGNIPVQIN--NFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNA 378 (557)
Q Consensus 310 ~~~p~~l~~~--------~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~ 378 (557)
.+|..+... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|. +..+++|+.|+|++|+
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 666655432 38999999999999 7888887 89999999999999987 554 4488888888888764
Q ss_pred ccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 379 LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 379 l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++++|++.+.+|.+++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...
T Consensus 788 ------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 788 ------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp ------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 4555666666666666666666666666666 56666544 4666677777766543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=409.95 Aligned_cols=421 Identities=19% Similarity=0.196 Sum_probs=342.8
Q ss_pred CCCCEEECCCCcCCccCchhccCCCCCCEEeC-cCcccCcccChhhhcCCCCCcE-----EEe----------cCccCcc
Q 042089 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVL-SDNNFQGEFPLSLLTNHSNLEV-----LRL----------LKVSNNL 91 (557)
Q Consensus 28 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~g~~p~~~~~~l~~L~~-----L~l----------~~~~~~~ 91 (557)
.+++.|+|++|++.|.+|+.|+++++|++|+| ++|.+.|..|.........+.. ++. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 67999999999999999999999999999999 9999988755321110000000 000 0000000
Q ss_pred ----------cccCCCCCCCCcccEEECCC--CCCCCcChhhhCCCCCcEEEccCCcCcC-----------------CCc
Q 042089 92 ----------RFKTENWIPTFQLKVLQLPN--CSLKVIPSFLLHQYNLKFLDLSSNKLVG-----------------NFP 142 (557)
Q Consensus 92 ----------~~~~~~~~~~~~L~~L~L~~--n~l~~ip~~l~~~~~L~~L~Ls~n~l~~-----------------~~p 142 (557)
............++.+.+.. |.+..||..++++++|++|+|++|+++| .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 00000011222344444443 5664499999999999999999999998 388
Q ss_pred HHH-hhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCc-CcC-CCchhHhhhcc-------CCcEEeCCCCcCc
Q 042089 143 TWL-MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN-LIG-TLPQNMGTVLQ-------KLMLIDISKNNFE 212 (557)
Q Consensus 143 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~~l~-------~L~~L~L~~n~l~ 212 (557)
..+ +.++++|++|++++|.+.+..+..+..+++|+.|++++|+ ++| .+|..++. ++ +|+.|++++|.++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC
Confidence 876 3489999999999999998865556799999999999998 998 89988864 55 9999999999999
Q ss_pred ccCCc--cccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccc-ccceeccccccccccc
Q 042089 213 GNIPY--SIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQ-LRGLYLKNNHFTGKIK 289 (557)
Q Consensus 213 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~ 289 (557)
.+|. .++++++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 8998 8999999999999999998 888 4578999999999999998 88889999999 999999999999 788
Q ss_pred ccccCCCC--CcEEEccCCcccCccCccc---c--CCCCCcEEEcCCCcCCCCcchhh-ccCCCCcEEEccCcccccccc
Q 042089 290 AGLLNSHG--LVVLDISNNLLSGHIPCWI---G--NFSYLDVLLMSKNHLEGNIPVQI-NNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 290 ~~l~~~~~--L~~L~Ls~n~l~~~~p~~l---~--~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~i~ 361 (557)
..+...+. |+.|++++|.+++.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 88776654 9999999999998877543 2 3458999999999999 556554 58999999999999998 555
Q ss_pred ccc-C--------CCCccEEEccCCcccccchhhhh--cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC------
Q 042089 362 SFL-N--------LSSIMHLYLQKNALSGQIPSTLL--RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG------ 424 (557)
Q Consensus 362 ~~~-~--------~~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~------ 424 (557)
... . +++|++|+|++|+++ .+|..+. .+++|+.|++++|++++ +|.++..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 433 2 239999999999999 7888887 89999999999999987 899999999999999976
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcCcccc
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFA 460 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~ 460 (557)
|++.+.+|..+..+++|+.|+|++|++ +.||..+.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 889999999999999999999999999 89998653
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=388.97 Aligned_cols=415 Identities=20% Similarity=0.191 Sum_probs=337.0
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEe
Confidence 58999999999999888889999999999999999999888999999999999999999998 68754 899999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCC--cEEEccCCcC--cCCCcHHHhh------------
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNL--KFLDLSSNKL--VGNFPTWLMQ------------ 147 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L--~~L~Ls~n~l--~~~~p~~~~~------------ 147 (557)
+++|.+.+...+..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 999998763223357889999999999999954 356777788 9999999998 6677765531
Q ss_pred -------------cCCCCCEEEccCcc-------ccCcccCCcccCCCccEEECcCCcCcCCCchhHhh--hccCCcEEe
Q 042089 148 -------------NNTNLEVLRLSNNS-------FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGT--VLQKLMLID 205 (557)
Q Consensus 148 -------------~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~ 205 (557)
++++|+.+++++|. +.+..+ .+..+++|+.|++++|.+++..+..+.. ..++|+.|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 24445555555543 332211 2335566666666666665443333221 135888999
Q ss_pred CCCCcCcccCCccc-----cCCCCCcEEEcCCCeeeeecCcccccCC---CCCcEEeccCCccccccCccccCcccccce
Q 042089 206 ISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLSATSVNGC---ASLEYLDVSENNFYGHIFPTYMNLTQLRGL 277 (557)
Q Consensus 206 L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (557)
+++|.++|.+|..+ +++++|+.++++.|.+ .+|...+..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 99998888888888 8888999999988888 5663322233 57999999999876432 12688999999
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccC--ccCccccCCCCCcEEEcCCCcCCCCcchh-hccCCCCcEEEccCc
Q 042089 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLEILYLSEN 354 (557)
Q Consensus 278 ~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n 354 (557)
++++|.+++.+|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++.+|.. +..+++|+.|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 999999999899999999999999999999997 67788999999999999999999867764 788999999999999
Q ss_pred ccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 355 RLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 355 ~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
.+++.+|.... ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus 410 ~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 410 ILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99987776543 79999999999999 88988889999999999999998 56665 8999999999999999987654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=383.71 Aligned_cols=436 Identities=21% Similarity=0.212 Sum_probs=330.4
Q ss_pred CCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
+...++++++++++++ +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..| ..+.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEE
Confidence 3455899999999995 887775 899999999999998888999999999999999999996555 568999999999
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCc--ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCC--CEEEcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVI--PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNL--EVLRLS 158 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~ 158 (557)
++++|.+. .+|.. .+.+|++|++++|.+..+ |..++.+++|++|++++|++++... ..+++| ++|+++
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLD 177 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEE
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEee
Confidence 99999987 45553 788999999999999654 5899999999999999999986322 355666 999999
Q ss_pred Cccc--cCcccCCcccCC-CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCc-----CcccCCccccCCCCCcEEEc
Q 042089 159 NNSF--SGILQLPKVKHD-FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNN-----FEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 159 ~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L 230 (557)
+|.+ ++..+..+..+. ..-.++++.|.+.+.++......+++|+.+++++|. +.+. +..+..+++|+.+++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTL 256 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEe
Confidence 9998 655333333322 122557778887777776555567788888887774 1111 123444455555544
Q ss_pred CCCeeeeecCccc--ccCCCCCcEEeccCCccccccCccc-----cCc--------------------------ccccce
Q 042089 231 SRNKFSGDLSATS--VNGCASLEYLDVSENNFYGHIFPTY-----MNL--------------------------TQLRGL 277 (557)
Q Consensus 231 ~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l--------------------------~~L~~L 277 (557)
.++.+.+...... ....++|++|++++|.+.|.+|..+ ..+ .+|++|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 4444332110000 0012245555555555544444433 122 457777
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCC--CcchhhccCCCCcEEEccCcc
Q 042089 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 278 ~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 355 (557)
++++|.+.... ....+++|++|++++|.+++.+|..++++++|++|++++|++++ .+|..+..+++|++|++++|.
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 77777765321 12578899999999999999999999999999999999999997 456778999999999999999
Q ss_pred ccccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCc
Q 042089 356 LFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPI 433 (557)
Q Consensus 356 l~~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 433 (557)
+++.+|. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.++..+++|++|+|++|+++ .+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 9986664 33789999999999999988877664 68999999999997 78888889999999999999999 5666
Q ss_pred c-ccCCCCCCEEEccCCcCcCCcCc
Q 042089 434 A-LCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 434 ~-l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
. +..+++|+.|++++|++++..|-
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCcCCCcch
Confidence 6 89999999999999999987763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=364.89 Aligned_cols=373 Identities=24% Similarity=0.283 Sum_probs=261.8
Q ss_pred CCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCccc
Q 042089 26 DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105 (557)
Q Consensus 26 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 105 (557)
+.++|++|++++|++ |.+|+.++++++|++|++++|.+.|.+|.. ++++++|+.+++.++.. .+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~------------~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLD------------RQAH 74 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHH------------HTCS
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhc------------cCCC
Confidence 357888888888888 688888888888888888888888888853 66666666555544321 3577
Q ss_pred EEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCc
Q 042089 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185 (557)
Q Consensus 106 ~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 185 (557)
+|++++|.+..+|.. .++|++|++++|++++ +|. .+++|++|++++|.+++.... .++|++|++++|+
T Consensus 75 ~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSC
T ss_pred EEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCC
Confidence 888888888767652 3678888888888885 664 347888888888888765322 2578888888888
Q ss_pred CcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccC
Q 042089 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF 265 (557)
Q Consensus 186 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 265 (557)
+++ +| .++ .+++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +|. +..+++|++|++++|.+++ +|
T Consensus 143 l~~-lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 143 LEK-LP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp CSS-CC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSS-CC
T ss_pred CCC-Cc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCc-CC
Confidence 885 77 343 57888888888888875 56543 478888888888874 553 4678888888888888875 33
Q ss_pred ccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCC
Q 042089 266 PTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345 (557)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 345 (557)
.. .++|++|++++|.++ .+|. +..+++|++|++++|.+++ +|.. +++|+.|++++|++++ +|.. .++
T Consensus 212 ~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCc
Confidence 32 258888899988887 6664 7788899999999998886 4543 3788999999998886 4543 378
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
|++|++++|.+++ +|.. .++|++|++++|++++ ++. -.++|++|++++|++++ +|.. +++|++|++++|
T Consensus 279 L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 279 LTFLDVSENIFSG-LSEL--PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp CCEEECCSSCCSE-ESCC--CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CCEEECcCCccCc-ccCc--CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 9999999999886 2221 2689999999999885 331 12589999999999986 6665 578999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcC--CcCccccccc
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNG--SIPSCFANVL 463 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g--~ip~~~~~l~ 463 (557)
+++ .+|. .+++|+.||+++|++++ .+|..++++.
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 999 5776 47899999999999999 8888776653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=368.89 Aligned_cols=442 Identities=21% Similarity=0.192 Sum_probs=281.9
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEe
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l 84 (557)
++++|||++|.|++..+.+|+++++|++|||++|++++..|.+|.++++|++|+|++|+++ .+|..+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence 7899999999999877789999999999999999999888889999999999999999998 677778999999999999
Q ss_pred cCccCcccccCCCCCCCCcccEEECCCCCCC--CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCC----CCEEEcc
Q 042089 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLK--VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN----LEVLRLS 158 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L~ 158 (557)
++|.+++ ++...+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..|..+ ..+++ ...++++
T Consensus 132 s~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECT
T ss_pred CCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcc
Confidence 9998875 44446788999999999999994 568899999999999999999997666654 24433 4578888
Q ss_pred CccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccC--------------------------------------
Q 042089 159 NNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQK-------------------------------------- 200 (557)
Q Consensus 159 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-------------------------------------- 200 (557)
.|.+....+... ....++.+++.+|.....++......+..
T Consensus 210 ~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 888876532221 33345556665554332222222122222
Q ss_pred -------------------CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCccc------------------
Q 042089 201 -------------------LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS------------------ 243 (557)
Q Consensus 201 -------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~------------------ 243 (557)
++.+++..+.+... ..+.....++.|++.+|.+.+ ++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCc
Confidence 22222222222211 112333445555555554431 11110
Q ss_pred -ccCCCCCcEEeccCCcccc--ccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC-ccccCC
Q 042089 244 -VNGCASLEYLDVSENNFYG--HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNF 319 (557)
Q Consensus 244 -~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~~ 319 (557)
...+++|+.++++.|.+.. ..+.....+.+|+.+++..+.... .+..+..+++|+.++++.+......+ ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 0123334444444443321 122222233344444444443332 23334455566666666555444333 345556
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEe
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 397 (557)
+.++.++++.|.+.+..+..+..++.++.|++++|.+.. .+|..+ .+++|++|+|++|++++..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 666666666666666666666666677777777665433 334333 566677777777777666666666677777777
Q ss_pred CCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC-CCCCEEEccCCcCcCC
Q 042089 398 LRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL-QKLRILDLSHNKLNGS 454 (557)
Q Consensus 398 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ 454 (557)
|++|++++..|..++.+++|++|+|++|++++..|..+..+ ++|++|++++|++++.
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 77777766666666666777777777777776666666666 4677777777776643
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=357.57 Aligned_cols=397 Identities=23% Similarity=0.276 Sum_probs=251.1
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCC-------------CEEeCcCcccCccc
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSL-------------EYLVLSDNNFQGEF 68 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~g~~ 68 (557)
+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 357899999999999 8999999999999999999999999999999998875 999999999884 5
Q ss_pred ChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhc
Q 042089 69 PLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQN 148 (557)
Q Consensus 69 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 148 (557)
|. -.++|++|++++|.+.+ ++. ...+|++|++++|.+..+|... ++|++|++++|++++ +|. +.+
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp~--~~~ 151 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LPE--LQN 151 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CCC--CTT
T ss_pred CC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCC-Ccc--cCC
Confidence 53 13788999999888876 443 2368899999998887666432 678999999998885 773 458
Q ss_pred CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEE
Q 042089 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 228 (557)
+++|++|++++|.+++... ...+|++|++++|++++ +| .+. .+++|+.|++++|.+++ +|... ++|++|
T Consensus 152 l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDLP---LSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCCC---TTCCEE
T ss_pred CCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCCc---CcccEE
Confidence 8889999999888886421 23578888888888885 66 343 57888888888888875 44432 578888
Q ss_pred EcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
++++|.+. .+|. +..+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+
T Consensus 221 ~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 221 VAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp ECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred ECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 88888887 6764 4678888888888888875 3432 3678888888888875 4543 37788888888888
Q ss_pred cCccCccccCCCCCcEEEcCCCcCCCCcchhhccC-CCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
++. |.. .++|++|++++|.+++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 290 ~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 290 SGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp SEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCCC--
T ss_pred Ccc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--CCcCCEEECCCCccc-cccc--
Confidence 762 211 2578888888888875 22 23 478888888888876 5543 577888888888887 4665
Q ss_pred hcCCCCcEEeCCCCcccc--cCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC--CcCccccccc
Q 042089 388 LRSTELLTLDLRDNKFFG--RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG--SIPSCFANVL 463 (557)
Q Consensus 388 ~~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g--~ip~~~~~l~ 463 (557)
.+++|++|++++|++++ .+|.+++. |+.|.+.|.+|.. +++|+.||+++|+++| .||+++.++.
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhhHhhee
Confidence 46778888888888877 67766543 2346677777753 4789999999999998 8998887775
Q ss_pred c
Q 042089 464 F 464 (557)
Q Consensus 464 ~ 464 (557)
.
T Consensus 423 ~ 423 (454)
T 1jl5_A 423 M 423 (454)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=357.45 Aligned_cols=366 Identities=20% Similarity=0.208 Sum_probs=271.4
Q ss_pred cccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCC
Q 042089 17 EGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTE 96 (557)
Q Consensus 17 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 96 (557)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++ +| ++++++|++|++++|.+.+. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--
Confidence 334455677788888888888888854 5 67788888888888888875 44 66778888888888777653 2
Q ss_pred CCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCc
Q 042089 97 NWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFL 176 (557)
Q Consensus 97 ~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 176 (557)
+..+++|++|++++|.+..+| ++.+++|++|++++|++++ ++ +.++++|++|++++|...+. .++..+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~--~~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITK--LDVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCC--CCCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccc--cccccCCcC
Confidence 566777888888888876666 6777888888888888875 44 34778888888888865554 356677778
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
++|++++|++++ +| + ..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|+++
T Consensus 173 ~~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS 241 (457)
T ss_dssp CEEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred CEEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence 888888888774 45 3 3467788888888887754 36777888888888888775 55 4567778888888
Q ss_pred CCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 336 (557)
+|.+++.. +..+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred CCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 88777643 345666777766554 45567777777777776 456788888888888877777
Q ss_pred chhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCC
Q 042089 337 PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSE 416 (557)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 416 (557)
|. .+++|+.+++++| ++|++|++++|++++ ++ +.+|++|++|++++|++++ ++.
T Consensus 303 ~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 303 DC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp EC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred cc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccc
Confidence 74 3456666666654 688999999999997 43 8899999999999999976 245
Q ss_pred ccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCccccc
Q 042089 417 LRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 417 L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
|..|++++|+++|. +.+..|+.+|+++|+++|.||+.+..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 77788999999987 34567888999999999999987643
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=350.55 Aligned_cols=382 Identities=19% Similarity=0.176 Sum_probs=237.5
Q ss_pred EEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCc
Q 042089 8 ELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87 (557)
Q Consensus 8 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~ 87 (557)
.++.++++++ .+|. +. ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...+
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-------------- 75 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-------------- 75 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT--------------
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc--------------
Confidence 4455555554 3444 22 5566666666666655566666666666666666665555544333
Q ss_pred cCcccccCCCCCCCCcccEEECCCCCCCC-cChhhhCCCCCcEEEccCCcCcCCCcHH-HhhcCCCCCEEEccCccccCc
Q 042089 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKV-IPSFLLHQYNLKFLDLSSNKLVGNFPTW-LMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 88 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-ip~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~ 165 (557)
..+++|++|++++|.+.. .|..+..+++|++|++++|++++.+|.. .+.++++|++|++++|.+++.
T Consensus 76 -----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 76 -----------RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp -----------TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred -----------cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 444455555555555633 3667778888888888888888655443 234677777777777777665
Q ss_pred ccCC-cccCCCccEEECcCCcCcCCCchhHhhhc--cCCcEEeCCCCcCcccCCccc--------cCCCCCcEEEcCCCe
Q 042089 166 LQLP-KVKHDFLRHLDISNNNLIGTLPQNMGTVL--QKLMLIDISKNNFEGNIPYSI--------GEMKELFLLDLSRNK 234 (557)
Q Consensus 166 ~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n~ 234 (557)
.+.. +..+++|++|++++|.+++..+..+.. + .+|+.+++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhc-cccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 3222 345666666666666666555554432 2 456666666666654333222 233445555555555
Q ss_pred eeeecCcccccC--CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCcc
Q 042089 235 FSGDLSATSVNG--CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI 312 (557)
Q Consensus 235 l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 312 (557)
+.+..+..+... .++|+.|++++|...+... ..+.+.+..
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~~ 265 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------------------------------GHTNFKDPD 265 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------------------------------TCCSSCCCC
T ss_pred ccccchhhhhccccccceeeEeecccccccccc--------------------------------------chhhhccCc
Confidence 444333332211 1344444444443322110 011111111
Q ss_pred Ccccc--CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhc
Q 042089 313 PCWIG--NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLR 389 (557)
Q Consensus 313 p~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~ 389 (557)
+..+. ..++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+ .+++|++|++++|++++..|..+.+
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 11111 12456666666666666666666666666666666666666555433 6777777777778887777888899
Q ss_pred CCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 390 STELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 390 ~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
+++|++|++++|++++..|.++..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999988899999999999999999999976667789999999999999999999884
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=366.99 Aligned_cols=415 Identities=20% Similarity=0.182 Sum_probs=324.2
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|.++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEE
Confidence 68999999999999888889999999999999999999988999999999999999999998 78854 899999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCC--cEEEccCCcC--cCCCcHHHhhcCC-CCCEEEcc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNL--KFLDLSSNKL--VGNFPTWLMQNNT-NLEVLRLS 158 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L--~~L~Ls~n~l--~~~~p~~~~~~l~-~L~~L~L~ 158 (557)
+++|.+.+...+..+..+++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+. .++ ..-.++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~-~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE-ECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccccc-ccCcceEEEEec
Confidence 9999987633334678899999999999999542 34555566 9999999999 777776553 332 11134555
Q ss_pred CccccCcccC-CcccCCCccEEECcCC----------------------------cCcCCCchhHh--hhccCCcEEeCC
Q 042089 159 NNSFSGILQL-PKVKHDFLRHLDISNN----------------------------NLIGTLPQNMG--TVLQKLMLIDIS 207 (557)
Q Consensus 159 ~n~l~~~~~~-~~~~~~~L~~L~L~~n----------------------------~l~~~~~~~~~--~~l~~L~~L~L~ 207 (557)
.|.+.+.... ....+++|+.+++++| .+.+.....+. ...++|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 5555543111 1124445555555554 33221111111 012478888888
Q ss_pred CCcCcccCCccc-----cCCCCCcEEEcCCCeeeeecCcccccC---CCCCcEEeccCCccccccCccccCcccccceec
Q 042089 208 KNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLSATSVNG---CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 208 ~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
+|.++|.+|..+ .+++.|+.+++..+.+ .+|...... ..+|++|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 888888888776 6666666666666655 444322211 257999999999885422 1267899999999
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccC--ccCccccCCCCCcEEEcCCCcCCCCcch-hhccCCCCcEEEccCccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQLEILYLSENRL 356 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l 356 (557)
++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999999899999999999999999999997 4567899999999999999999986665 478899999999999999
Q ss_pred ccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 357 ~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
++.+|.... ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 441 ~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 987766543 79999999999999 78888889999999999999998 56665 8999999999999999997654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=355.39 Aligned_cols=443 Identities=20% Similarity=0.143 Sum_probs=312.8
Q ss_pred EEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCc
Q 042089 8 ELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87 (557)
Q Consensus 8 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~ 87 (557)
+.+=++-+++ .+|..+. +.+++|||++|++++..|..|.++++|++|+|++|+|+ .+|+.+|.++++|++|++++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 3444555565 5787665 58999999999999887889999999999999999998 566678999999999999999
Q ss_pred cCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcC-CCcHHHhhcCCCCCEEEccCccccCc
Q 042089 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVG-NFPTWLMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 88 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~ 165 (557)
.+.+ ++...+..+.+|++|++++|.+..+|. .++.+++|++|++++|++++ .+|..+ ..+++|++|++++|.+++.
T Consensus 111 ~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEE
T ss_pred cCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-ccchhhhhhcccCcccccc
Confidence 8864 444567889999999999999977775 58999999999999999975 455554 5899999999999999886
Q ss_pred ccCCcccC----CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccC--------------------------
Q 042089 166 LQLPKVKH----DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNI-------------------------- 215 (557)
Q Consensus 166 ~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------- 215 (557)
.+..+..+ .....++++.|.+.. ++..... ...++.+++.+|.....+
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccc-cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 43333322 234578999998874 4443332 345667777665332110
Q ss_pred --------------------------------CccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 216 --------------------------------PYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 216 --------------------------------p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
+..+..+.+++.+++.++.+.. ++. +..+..++.|++.+|.+.+.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-ccc--cccchhhhhhhcccccccCc
Confidence 1112223445555555555542 221 23456777777777766543
Q ss_pred cCc-------------------cccCcccccceecccccccc--cccccccCCCCCcEEEccCCcccCccCccccCCCCC
Q 042089 264 IFP-------------------TYMNLTQLRGLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 322 (557)
Q Consensus 264 ~~~-------------------~~~~l~~L~~L~L~~n~~~~--~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L 322 (557)
.+. ....+++|+.++++.|.+.. ..+..+....+|+.++++.+.... ++..+..++.|
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 221 12234556666666665532 233444455566666666665543 34455667777
Q ss_pred cEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcc-cccchhhhhcCCCCcEEeCC
Q 042089 323 DVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNAL-SGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l-~~~~p~~l~~~~~L~~L~L~ 399 (557)
+.+++..++.....+ ..+..+++++.++++.|.+.+..+... .++.+++|++++|++ .+.+|..+..+++|++|+++
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 777777766554433 456777788888888888877666555 677888888888874 34466777788888888888
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
+|++++..|.+++.+++|++|+|++|++++..|..+..+++|++||+++|++++..|..+.++
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 888887778888888888888888888887777778888888888888888887777766543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=334.01 Aligned_cols=365 Identities=21% Similarity=0.241 Sum_probs=272.8
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccC-chhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNL-PSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++|.+++..| ..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence 57999999999999988999999999999999999998766 5679999999999999999996666 468999999999
Q ss_pred EecCccCcccccC-CCCCCCCcccEEECCCCCCCCc-Chh-hhCCCCCcEEEccCCcCcCCCcHHHhhcC--CCCCEEEc
Q 042089 83 RLLKVSNNLRFKT-ENWIPTFQLKVLQLPNCSLKVI-PSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNN--TNLEVLRL 157 (557)
Q Consensus 83 ~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~i-p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L 157 (557)
++++|.+.+..+. ..+..+++|++|++++|.+..+ |.. +..+++|++|++++|++++..|..+. .+ .+|+.|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG-GGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh-cccccccccccc
Confidence 9999998765433 3467788999999999999554 654 78899999999999999877776553 44 67889999
Q ss_pred cCccccCcccCCc--------ccCCCccEEECcCCcCcCCCchhHhhh--ccCCcEEeCCCCcCcccCCccccCCCCCcE
Q 042089 158 SNNSFSGILQLPK--------VKHDFLRHLDISNNNLIGTLPQNMGTV--LQKLMLIDISKNNFEGNIPYSIGEMKELFL 227 (557)
Q Consensus 158 ~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 227 (557)
++|.+.+...... ..+++|++|++++|.+++..|..++.. .++|+.|++++|...+....
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 257 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------- 257 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence 9998887643322 245678888888888887777776542 26788888888765542110
Q ss_pred EEcCCCeeeeecCccc-ccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC
Q 042089 228 LDLSRNKFSGDLSATS-VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306 (557)
Q Consensus 228 L~L~~n~l~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n 306 (557)
.+.+.+..+..+ ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 111110000000 012356777777777777777777777777777777777777666777777777777777777
Q ss_pred cccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccch
Q 042089 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIP 384 (557)
Q Consensus 307 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p 384 (557)
.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..|
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777767777777777777777777777777777777777777777777776544443 67777777777777776665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=326.96 Aligned_cols=357 Identities=20% Similarity=0.233 Sum_probs=302.5
Q ss_pred CCCCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++++++|++|++++|.+++ +| ++++++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCE
Confidence 368999999999999974 5 799999999999999999974 4 8999999999999999996 45 789999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
|++++|.+.+. + +..+++|++|++++|.+..++ ++.+++|++|++++|+..+.++ +..+++|++|++++|.
T Consensus 111 L~L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTKL-D---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSCC-C---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred EECCCCcCCee-c---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 99999998763 3 678899999999999997776 8899999999999997776774 3589999999999999
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
+++. ++..+++|+.|++++|++++. + +. .+++|+.|++++|++++ +| ++.+++|+.|++++|++++ ++
T Consensus 182 l~~l---~l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~- 249 (457)
T 3bz5_A 182 ITEL---DVSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD- 249 (457)
T ss_dssp CCCC---CCTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccee---ccccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC-
Confidence 9984 477889999999999999864 3 43 58999999999999997 66 8899999999999999985 34
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
...+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ....
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 246789999998765 56788999999888887 46789999999999998888885 3455
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N 401 (557)
|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++++ + +.|..|++++|
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~~-l-------~~L~~L~l~~n 365 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQD-F-------SSVGKIPALNN 365 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCCB-C-------TTGGGSSGGGT
T ss_pred ceEechhhc-------------ccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCCC-c-------cccccccccCC
Confidence 666665554 6899999999999883 3 5689999999999999986 2 45777889999
Q ss_pred cccccCCccccCCCCccEEEcCCCcccccCCccccC
Q 042089 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQ 437 (557)
Q Consensus 402 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 437 (557)
+++|. +.+..|+.+++++|+++|.+|..+..
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 99876 34567888999999999999987543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=323.23 Aligned_cols=345 Identities=23% Similarity=0.297 Sum_probs=257.2
Q ss_pred CCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccE
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKV 106 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 106 (557)
+++++.|+++++.+. .+| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+.+..+ +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 456666666666665 344 35666666666666666663 332 5666666666666666554333 456677777
Q ss_pred EECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcC
Q 042089 107 LQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL 186 (557)
Q Consensus 107 L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 186 (557)
|++++|.+..+|. +..+++|++|++++|.+++ ++. +.++++|++|+++ +.+.+. .++..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 7777777766665 7778888888888888774 443 3578888888885 444444 3456778888888888887
Q ss_pred cCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCc
Q 042089 187 IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP 266 (557)
Q Consensus 187 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 266 (557)
++ ++. + ..+++|+.|++++|.+++..| ++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+
T Consensus 190 ~~-~~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 190 SD-ISV-L-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CC-CGG-G-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CC-Chh-h-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh-
Confidence 63 332 3 357888888888888876554 6778888888888888763 33 24578888888888888876544
Q ss_pred cccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCC
Q 042089 267 TYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346 (557)
Q Consensus 267 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 346 (557)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 7788889999999988886544 7788899999999998887654 7788999999999999987766 7788999
Q ss_pred cEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 347 ~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
+.|++++|++++. +.+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999988864 666688999999999999988777 8889999999999999876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=321.91 Aligned_cols=346 Identities=22% Similarity=0.232 Sum_probs=201.9
Q ss_pred CCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcE
Q 042089 50 NLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKF 129 (557)
Q Consensus 50 ~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~ 129 (557)
.++++++|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+.+|++|++++|.+..++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 3567888888888876 4552 6677777777777776654432 4566677777777777755555 666777777
Q ss_pred EEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 130 LDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 130 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
|++++|++++ ++. +.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+. +. + ..+++|+.|++++|
T Consensus 117 L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~~-~-~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-KP-L-ANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-GG-G-TTCTTCCEEECCSS
T ss_pred EECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-hh-h-ccCCCCCEEECcCC
Confidence 7777777663 333 34667777777777766654 234456666666664 333322 11 2 23555666666665
Q ss_pred cCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccc
Q 042089 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289 (557)
Q Consensus 210 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 289 (557)
.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ .
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~------------------------~-- 236 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD------------------------I-- 236 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC------------------------C--
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc------------------------c--
Confidence 55432 234555555555555555543222 2334555555555554433 1
Q ss_pred ccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCc
Q 042089 290 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSI 369 (557)
Q Consensus 290 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L 369 (557)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 311 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNL 311 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCC
Confidence 134445555555555555554433 4555556666666655554333 5555666666666666554322 3456666
Q ss_pred cEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 370 MHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 370 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
++|++++|++++..| +..+++|++|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 666666666665444 55666666666666666543 356666666666666666666555 566666667777776
Q ss_pred cCcC
Q 042089 450 KLNG 453 (557)
Q Consensus 450 ~l~g 453 (557)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=308.56 Aligned_cols=321 Identities=20% Similarity=0.156 Sum_probs=228.9
Q ss_pred cEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCC
Q 042089 105 KVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNN 184 (557)
Q Consensus 105 ~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 184 (557)
+.++.+++.+..+|..+. +++++|++++|++++..|..+ .++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 567888888888887553 578889998888885555544 57888888888888888765555667788888888888
Q ss_pred cCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCcccccc
Q 042089 185 NLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHI 264 (557)
Q Consensus 185 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 264 (557)
.++ .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccC
Confidence 877 4555443457788888888888877777777788888888888887764333 34456777888888777777655
Q ss_pred CccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCC
Q 042089 265 FPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 344 (557)
Q Consensus 265 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 344 (557)
+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 55667777777777777777766666777777777777777777666666666666777777777777755545667777
Q ss_pred CCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcC
Q 042089 345 QLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLR 423 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 423 (557)
+|+.|++++|.+++..+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77777777777765444433 66677777777777776666666677777777777777765555566666777777777
Q ss_pred CCccccc
Q 042089 424 GNYLQGE 430 (557)
Q Consensus 424 ~N~l~g~ 430 (557)
+|.++..
T Consensus 329 ~N~l~c~ 335 (477)
T 2id5_A 329 SNPLACD 335 (477)
T ss_dssp SSCEECS
T ss_pred CCCccCc
Confidence 7766643
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=308.13 Aligned_cols=321 Identities=20% Similarity=0.164 Sum_probs=187.1
Q ss_pred cEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCC
Q 042089 128 KFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207 (557)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 207 (557)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECC
Confidence 45555555555 455432 24566666666666655434445566666666666666544444443 35666666666
Q ss_pred CCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccc
Q 042089 208 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287 (557)
Q Consensus 208 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 287 (557)
+|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 666654444445666666666666666653333 2334566666666666666655555566666666666666666655
Q ss_pred ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc-ccCC
Q 042089 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS-FLNL 366 (557)
Q Consensus 288 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~ 366 (557)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.+++..+. +..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 445555666666666666666655555566666666666666665555555555555666666666666532222 2255
Q ss_pred CCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEc
Q 042089 367 SSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDL 446 (557)
Q Consensus 367 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldl 446 (557)
++|++|++++|++++..+..+..+++|+.|++++|++++..|.++..+++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 66666666666666555555666666666666666666655666666666666666666666544455566666666666
Q ss_pred cCCcCcCC
Q 042089 447 SHNKLNGS 454 (557)
Q Consensus 447 s~N~l~g~ 454 (557)
++|++++.
T Consensus 328 ~~N~l~c~ 335 (477)
T 2id5_A 328 DSNPLACD 335 (477)
T ss_dssp CSSCEECS
T ss_pred cCCCccCc
Confidence 66666543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=277.92 Aligned_cols=305 Identities=20% Similarity=0.287 Sum_probs=176.4
Q ss_pred CCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEE
Q 042089 100 PTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 179 (557)
.+.+|++|+++++.+..+|. +..+++|++|++++|+++ .++. +.++++|++|++++|.++.. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 34456666666666655553 556666666666666666 3333 34666666666666665553 223455556666
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
++++|.+++ ++. + ..+++|+.|++++|.....++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.
T Consensus 116 ~l~~n~i~~-~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISD-ISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCC-CGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECTTSC
T ss_pred ECcCCcccC-chh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh--hccCCCCCEEEccCCc
Confidence 666665552 222 2 235556666665554433332 255555555555555555422 11 2344455555555544
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~ 339 (557)
+ ++..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 189 l------------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 I------------------------EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp C------------------------CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred c------------------------ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 4 32211 3444555555555555554333 4455556666666665554333
Q ss_pred hccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccE
Q 042089 340 INNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRV 419 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 419 (557)
+..+++|++|++++|.+++ ++.+..+++|++|++++|++++. +.+..+++|++|++++|++++..|.+++.+++|++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5566666666666666654 34444666777777777776643 34667777777777777777777777777777888
Q ss_pred EEcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 420 LLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 420 L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
|++++|++++..| +..+++|+.||+++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888887776555 677788888888888765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=280.25 Aligned_cols=286 Identities=21% Similarity=0.274 Sum_probs=212.7
Q ss_pred CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEE
Q 042089 149 NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLL 228 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 228 (557)
+++|++|+++++.+... ..+..+++|++|++++|.++ .++. + ..+++|++|++++|.++. ++ .+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~-~-~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT-DISP-L-SNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccc-cchh-h-hcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 34444444444444332 12334445555555555544 2222 2 235666666666666553 22 46666777777
Q ss_pred EcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 229 DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
++++|.+. .++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 116 ~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 77777665 2333 4566777777777775544433 36777888888888888775443 77889999999999999
Q ss_pred cCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
++..+ +..+++|+.+++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+.
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHh
Confidence 86544 7889999999999999997655 8899999999999999986544 66899999999999999863 4688
Q ss_pred cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
.+++|++|++++|++++. .++..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999999999999999764 468899999999999999999999999999999999999999998776
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=285.87 Aligned_cols=250 Identities=30% Similarity=0.437 Sum_probs=146.3
Q ss_pred CccEEECcCCcCcC--CCchhHhhhccCCcEEeCCC-CcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 175 FLRHLDISNNNLIG--TLPQNMGTVLQKLMLIDISK-NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 175 ~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
+++.|++++|.+++ .+|..+. .+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------- 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA------------- 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------------
T ss_pred eEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------------
Confidence 45555555555554 4454443 245555555552 555555555555555555555555555444
Q ss_pred EEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCC-CCcEEEcCCC
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKN 330 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~l~~n 330 (557)
+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ .|++|++++|
T Consensus 117 ------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 117 ------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ------------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred ------------CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 444444444444455555544444455555555555555555555555555555554 5555555555
Q ss_pred cCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCc
Q 042089 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPH 409 (557)
Q Consensus 331 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~ 409 (557)
.+++.+|..+..++ |++|++++|.+++.+|..+ .+++|++|++++|++++.+|. +..+++|++|++++|++++.+|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 55555555555554 5566666665555554443 556666666666666655444 56667777777777777777777
Q ss_pred cccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc-CcC
Q 042089 410 QINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK-LNG 453 (557)
Q Consensus 410 ~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~-l~g 453 (557)
++..+++|++|+|++|+++|.+|.. ..+++|+.+++++|+ +.|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7777777777777777777777765 677777777787777 554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=283.44 Aligned_cols=309 Identities=21% Similarity=0.191 Sum_probs=178.9
Q ss_pred CCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEE
Q 042089 101 TFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHL 179 (557)
Q Consensus 101 ~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 179 (557)
+.++++|+++++.++.+|.. +..+++|++|++++|.+++..+..+ .++++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34666666666666666654 4556666666666666663333332 466666666666666665543334456666666
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
++++|.++ .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++ ...+++|+++++++|.
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeeccccc
Confidence 66666665 4454443345666666666666665555556666666666666666552 22 2234555555555555
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchh
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ 339 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~ 339 (557)
+.+. .. .++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..
T Consensus 198 l~~~-----~~------------------------~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LSTL-----AI------------------------PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSEE-----EC------------------------CSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred cccc-----CC------------------------CCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HH
Confidence 4321 11 23444455554444432 111 124455555555555532 34
Q ss_pred hccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCcc
Q 042089 340 INNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418 (557)
Q Consensus 340 l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 418 (557)
+..+++|+.|++++|.+++..|..+ .+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.+++.+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 5555555666666655555444333 55666666666666653 4545556677777777777775 5666677777788
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 419 VLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 419 ~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
.|++++|++++. | +..+++|+.|++++|++++.
T Consensus 322 ~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 888888877743 3 56778888888888888764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=280.66 Aligned_cols=312 Identities=22% Similarity=0.205 Sum_probs=235.6
Q ss_pred CCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCC
Q 042089 75 NHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLE 153 (557)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 153 (557)
.++++++|++.++.+. .+|...+..+++|++|++++|.+..++. .+..+++|++|++++|.+++..|..+ .++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCC
Confidence 4689999999998765 4555456778899999999999977664 88999999999999999996555544 6899999
Q ss_pred EEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCC
Q 042089 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233 (557)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 233 (557)
+|++++|.++......+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+++. .+..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 999999999976444456899999999999999966565564 589999999999999854 3677899999999999
Q ss_pred eeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC
Q 042089 234 KFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP 313 (557)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 313 (557)
.+.+ + ...++|++|++++|.+... +.. ..+ +|++|++++|.+++.
T Consensus 197 ~l~~-~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~------------------------~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 197 LLST-L-----AIPIAVEELDASHNSINVV-RGP--VNV------------------------ELTILKLQHNNLTDT-- 241 (390)
T ss_dssp CCSE-E-----ECCSSCSEEECCSSCCCEE-ECC--CCS------------------------SCCEEECCSSCCCCC--
T ss_pred cccc-c-----CCCCcceEEECCCCeeeec-ccc--ccc------------------------cccEEECCCCCCccc--
Confidence 8873 2 2346789999999887643 211 123 455555555555442
Q ss_pred ccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 314 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
.++..+++|++|++++|.+++..|..+..+++|+.|++++|++++.......+++|++|++++|+++ .+|..+..+++|
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 3455556666666666666665666666666777777777766653333336778888888888887 567778888899
Q ss_pred cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 394 LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
++|++++|++++. | +..+++|+.|++++|++++.-
T Consensus 321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 9999999998644 3 677889999999999988653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=313.97 Aligned_cols=383 Identities=19% Similarity=0.095 Sum_probs=215.3
Q ss_pred CCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEE
Q 042089 52 TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLD 131 (557)
Q Consensus 52 ~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~ 131 (557)
++|++|+|++|.++.......+..+++|++|++++|.+..... ..++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence 4677888888877644333335556666666666554432100 13556667777777777
Q ss_pred ccCCcCcCCCcHHHhhcCC----CCCEEEccCccccCcc----cCCcccCCCccEEECcCCcCcCCCchhHhhh----cc
Q 042089 132 LSSNKLVGNFPTWLMQNNT----NLEVLRLSNNSFSGIL----QLPKVKHDFLRHLDISNNNLIGTLPQNMGTV----LQ 199 (557)
Q Consensus 132 Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----l~ 199 (557)
+++|.+++..+..++..++ +|++|++++|.++... +..+..+++|++|++++|.+++..+..++.. .+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 7777776555555555555 5777777777766421 1223466677777777777665444444332 23
Q ss_pred CCcEEeCCCCcCccc----CCccccCCCCCcEEEcCCCeeeeecCccccc----CCCCCcEEeccCCccccc----cCcc
Q 042089 200 KLMLIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSGDLSATSVN----GCASLEYLDVSENNFYGH----IFPT 267 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~----~~~~ 267 (557)
+|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 577777777777653 2445556677777777777765432222221 244677777777766553 3444
Q ss_pred ccCcccccceecccccccccc-----cccccCCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 268 YMNLTQLRGLYLKNNHFTGKI-----KAGLLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~-----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555666666666666655432 12222456666666666666543 455555566666666666666544333
Q ss_pred hhccC-----CCCcEEEccCcccccc----ccccc-CCCCccEEEccCCcccccchhhhhc-----CCCCcEEeCCCCcc
Q 042089 339 QINNF-----RQLEILYLSENRLFGS----IASFL-NLSSIMHLYLQKNALSGQIPSTLLR-----STELLTLDLRDNKF 403 (557)
Q Consensus 339 ~l~~l-----~~L~~L~L~~n~l~~~----i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~N~l 403 (557)
.+... ++|++|++++|.+++. ++... .+++|++|++++|++++..+..+.. +++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 33322 4666666666665543 22222 4556666666666655444433332 45566666666666
Q ss_pred cc----cCCccccCCCCccEEEcCCCcccccCCccc-----cCCCCCCEEEccCCcCcCC
Q 042089 404 FG----RIPHQINKHSELRVLLLRGNYLQGEIPIAL-----CQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 404 ~~----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l-----~~l~~L~~Ldls~N~l~g~ 454 (557)
++ .+|.++..+++|++|++++|++++.....+ ....+|+.|++.++.+...
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 54 455555556666666666666554321111 1123455555555555433
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=295.08 Aligned_cols=310 Identities=21% Similarity=0.199 Sum_probs=191.0
Q ss_pred CCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccE
Q 042089 100 PTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 178 (557)
.+..++.+++++|.++.+|.. +..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+..+..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 345677888888877777654 5667788888888888775544444 47778888888888777765444567777888
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCC
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSEN 258 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n 258 (557)
|++++|.++ .+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ++ ...+++|+.|++++|
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccC
Confidence 888877777 5555544457777777777777777777777777777777777777763 32 234667777777777
Q ss_pred ccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
.+.+. ...++|+.|++++|.++...+ .+ .++|+.|++++|.+++ +.++..+++|+.|++++|.+++..|.
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 66542 233466667777766653322 22 2456666666666665 24555666666666666666666666
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCcc
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELR 418 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 418 (557)
.+..+++|+.|++++|.+++..+....+++|++|+|++|.++ .+|..+..+++|++|++++|++++. | ++.+++|+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence 666666666666666665542222224555555555555554 3444445555555555555555322 1 33344444
Q ss_pred EEEcCCCcccc
Q 042089 419 VLLLRGNYLQG 429 (557)
Q Consensus 419 ~L~L~~N~l~g 429 (557)
.|++++|.+++
T Consensus 349 ~L~l~~N~~~~ 359 (597)
T 3oja_B 349 NLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCEEH
T ss_pred EEEeeCCCCCC
Confidence 44444444443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=311.55 Aligned_cols=401 Identities=21% Similarity=0.159 Sum_probs=240.7
Q ss_pred CCCcCEEeCCCCCCcccCC-ccCCCCCCCCEEECCCCcCCc----cCchhccCCCCCCEEeCcCcccCcccChhhhcCCC
Q 042089 3 LKNLTELDLRENNLEGQLP-WRLSDLTGLKVFDISSNQLSG----NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHS 77 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~ 77 (557)
.++|++|+|++|+++.... ..+..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+..+..+...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3567888888888765433 236777888888888888774 34666777788888888888776544433333333
Q ss_pred CCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCC-----CcChhhhCCCCCcEEEccCCcCcCCCcHHHhh----c
Q 042089 78 NLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK-----VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQ----N 148 (557)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~----~ 148 (557)
. ...+|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .
T Consensus 82 ~---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 82 T---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140 (461)
T ss_dssp S---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred h---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcC
Confidence 0 0114555666666553 45667777788888888888776544444332 2
Q ss_pred CCCCCEEEccCccccCccc----CCcccCCCccEEECcCCcCcCCCchhHhhh----ccCCcEEeCCCCcCccc----CC
Q 042089 149 NTNLEVLRLSNNSFSGILQ----LPKVKHDFLRHLDISNNNLIGTLPQNMGTV----LQKLMLIDISKNNFEGN----IP 216 (557)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~----~p 216 (557)
.++|++|++++|.+++... ..+..+++|++|++++|.+++..+..++.. .++|+.|++++|.+++. ++
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 4467777777776665321 112245667777777776654433333322 33677777777766642 35
Q ss_pred ccccCCCCCcEEEcCCCeeeeec----CcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccc
Q 042089 217 YSIGEMKELFLLDLSRNKFSGDL----SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL 292 (557)
Q Consensus 217 ~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l 292 (557)
..+..+++|++|++++|.+.+.. ....+..+++|++|++++|.+++.... .++..+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l 280 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVL 280 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHH
Confidence 55556666666666666654321 111222344555555555544332000 134444
Q ss_pred cCCCCCcEEEccCCcccCccCccccC-----CCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccccccc
Q 042089 293 LNSHGLVVLDISNNLLSGHIPCWIGN-----FSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGSIASF 363 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~i~~~ 363 (557)
..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 44556666666666655433333222 24677777777776654 4566667788888888888776543221
Q ss_pred c------CCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCcccccCCcccc-----CCCCccEEEcCCCccc
Q 042089 364 L------NLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFFGRIPHQIN-----KHSELRVLLLRGNYLQ 428 (557)
Q Consensus 364 ~------~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~ 428 (557)
. ..++|++|++++|++++ .+|..+..+++|++|++++|++++.....+. ...+|+.|.+.++.+.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 1 16788889999998886 6888888899999999999998765333222 2346888888887776
Q ss_pred ccCCccc----cCCCCCCEE
Q 042089 429 GEIPIAL----CQLQKLRIL 444 (557)
Q Consensus 429 g~ip~~l----~~l~~L~~L 444 (557)
...++.+ ...|+|+++
T Consensus 441 ~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 441 EEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHhccCCCcEee
Confidence 5544433 235566554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=276.95 Aligned_cols=253 Identities=26% Similarity=0.369 Sum_probs=199.0
Q ss_pred CCCCEEEccCccccC--cccCCcccCCCccEEECcC-CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCc
Q 042089 150 TNLEVLRLSNNSFSG--ILQLPKVKHDFLRHLDISN-NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELF 226 (557)
Q Consensus 150 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 226 (557)
.+++.|++++|.+++ ..+..+..+++|++|++++ |.+++.+|..++ .+++|++|++++|.+++.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999998 5445567899999999995 999999999986 599999999999999999999999999999
Q ss_pred EEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC
Q 042089 227 LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 306 (557)
Q Consensus 227 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n 306 (557)
+|++++|.+.+.+|..+ ..+++|++|++++|.+++.+|..+..++ +.|++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N 184 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRN 184 (313)
T ss_dssp EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCC
Confidence 99999999987666554 4566677766666666655555444443 15555555555
Q ss_pred cccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhh
Q 042089 307 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPST 386 (557)
Q Consensus 307 ~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~ 386 (557)
.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|.+..+++|++|++++|++++.+|..
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 55555555555554 66666666666666666667777777777777777777776667788888888888888889999
Q ss_pred hhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc-ccc
Q 042089 387 LLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY-LQG 429 (557)
Q Consensus 387 l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~g 429 (557)
+..+++|++|++++|+++|.+|.. +.+++|+.+++++|+ +.|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999999999999998887 788899999999997 554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=291.94 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=267.4
Q ss_pred CCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCc
Q 042089 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202 (557)
Q Consensus 123 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 202 (557)
.+.+++.+++++|.+. .+|..++.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++ .+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCC
Confidence 4578999999999988 67777777999999999999999988655677899999999999999976565554 589999
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (557)
+|++++|.+++..+..++++++|++|++++|.+.+. ++..+..+++|++|++++|.+++. .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 999999999966666679999999999999999854 444457899999999999999864 3566889999999999
Q ss_pred cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
.+++. ....+|+.|++++|.++...+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+++.+|.
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 88743 34568999999999987554332 3689999999999997 47789999999999999999998776
Q ss_pred cc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCC
Q 042089 363 FL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL 441 (557)
Q Consensus 363 ~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L 441 (557)
.+ .+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|.+++.+++|+.|+|++|++++. | +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 55 89999999999999996 6777788999999999999997 7888899999999999999999854 3 6778999
Q ss_pred CEEEccCCcCcCCc
Q 042089 442 RILDLSHNKLNGSI 455 (557)
Q Consensus 442 ~~Ldls~N~l~g~i 455 (557)
+.|++++|++++..
T Consensus 348 ~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 348 KNLTLSHNDWDCNS 361 (597)
T ss_dssp SEEECCSSCEEHHH
T ss_pred CEEEeeCCCCCChh
Confidence 99999999998763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=265.17 Aligned_cols=266 Identities=19% Similarity=0.181 Sum_probs=156.7
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
+|++|++++|.+++..|..+. .+++|++|++++|.+++..|..++++++|++|++++|.+. .+|...+ ++|++|+
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR 129 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence 444444444444422232332 3455555555555555444555555555555555555554 4444332 4555555
Q ss_pred ccCCccccccCccccCcccccceeccccccc--ccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 5555555444444555555555555555553 2344444444 56666666666554 343332 4666666666666
Q ss_pred CCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 66666666666677777777776666554333 6677777777777776 677777778888888888888876655555
Q ss_pred cC------CCCccEEEcCCCccc--ccCCccccCCCCCCEEEccCCc
Q 042089 412 NK------HSELRVLLLRGNYLQ--GEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~------l~~L~~L~L~~N~l~--g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.. .+.|+.|++++|.+. +..|.++..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 356788888888876 5566777888888888888774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=257.82 Aligned_cols=267 Identities=19% Similarity=0.171 Sum_probs=159.1
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
.+++|++++|.+++..+..+. .+++|++|++++|.+++..|..++++++|++|++++|.++ .+|...+ ++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 444445555544432222332 3555555555555555555555555566666666655554 4444332 4566666
Q ss_pred ccCCccccccCccccCcccccceecccccccc--cccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 66665555444445555666666666665542 445556666666666666666653 344332 5667777777776
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccc-cCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASF-LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
++..|..+..+++|++|++++|.+++..+.. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 6666666667777777777777766654433 36667777777777776 666677777777777777777766555555
Q ss_pred cC------CCCccEEEcCCCcccc--cCCccccCCCCCCEEEccCCc
Q 042089 412 NK------HSELRVLLLRGNYLQG--EIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~------l~~L~~L~L~~N~l~g--~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.. .+.++.|++++|.+.. ..|..+..++.++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 32 3567778888887753 445667777788888887774
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-33 Score=304.04 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCCccEEEccCCc--ccccchhhhhc-CCCCcEEeCCCCcccc-cCCccccCCCCccEEEcCCCcccccC-CccccCCCC
Q 042089 366 LSSIMHLYLQKNA--LSGQIPSTLLR-STELLTLDLRDNKFFG-RIPHQINKHSELRVLLLRGNYLQGEI-PIALCQLQK 440 (557)
Q Consensus 366 ~~~L~~L~L~~n~--l~~~~p~~l~~-~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~ 440 (557)
+++|++|++++|. +++..+..+.. +++|++|++++|++++ .++..+..+++|++|++++|++++.. +.....+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 4444444444322 33333333322 4444455554444443 22233344444555555544444332 222234444
Q ss_pred CCEEEccCCcCcC
Q 042089 441 LRILDLSHNKLNG 453 (557)
Q Consensus 441 L~~Ldls~N~l~g 453 (557)
|+.|++++|++++
T Consensus 515 L~~L~ls~n~it~ 527 (592)
T 3ogk_B 515 LRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEEESCBCCT
T ss_pred cCeeECcCCcCCH
Confidence 5555555554443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=259.59 Aligned_cols=289 Identities=20% Similarity=0.242 Sum_probs=158.6
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECc
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 182 (557)
++++++++++.+..+|..+. +++++|++++|.+++..|..+ .++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 67777777777777776543 567777777777764444333 467777777777777666543445566667777777
Q ss_pred CCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeee-ecCcccccCCCCCcEEeccCCccc
Q 042089 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-DLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 183 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+|.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66666 5555442 566666666666665444456666666666666666542 1222222333 5555555555554
Q ss_pred cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc
Q 042089 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341 (557)
Q Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 341 (557)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|+.|++++|+++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3 232222 34555555555555444444444455555555555554444444444444455555444444 3444444
Q ss_pred cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhc------CCCCcEEeCCCCccc--ccCCccccC
Q 042089 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLR------STELLTLDLRDNKFF--GRIPHQINK 413 (557)
Q Consensus 342 ~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------~~~L~~L~L~~N~l~--~~~p~~l~~ 413 (557)
.+ ++|++|++++|++++..+..+.. ...|+.|++++|++. +..|.++..
T Consensus 262 ~l-----------------------~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 262 DL-----------------------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp GC-----------------------TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred cC-----------------------ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 44 45555555555554333333332 245667777777665 445566666
Q ss_pred CCCccEEEcCCCc
Q 042089 414 HSELRVLLLRGNY 426 (557)
Q Consensus 414 l~~L~~L~L~~N~ 426 (557)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777776664
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-32 Score=297.08 Aligned_cols=393 Identities=15% Similarity=0.089 Sum_probs=171.9
Q ss_pred CCCCCCEEECCCCcCCccCchhccC-CCC-CCEEeCcCcc-cCcccChhhhcCCCCCcEEEecCccCccccc---CCCCC
Q 042089 26 DLTGLKVFDISSNQLSGNLPSVIAN-LTS-LEYLVLSDNN-FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFK---TENWI 99 (557)
Q Consensus 26 ~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~-L~~L~Ls~n~-l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~ 99 (557)
.+++|++|+|++|.+++..+..+.. +++ |++|+|++|. ++...-.....++++|++|++++|.+.+... .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555555444444443 222 5555555544 1100001122345555555555554322100 00112
Q ss_pred CCCcccEEECCCCCCC-----CcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcccc---CcccCCcc
Q 042089 100 PTFQLKVLQLPNCSLK-----VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFS---GILQLPKV 171 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~ 171 (557)
.+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +|..+ .++++|+.|+++..... +.......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH-hhhhHHHhhcccccccccchHHHHHHhh
Confidence 3445555555555543 223334445555555555555442 33332 34555555555432111 00011122
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
.+++|+.++++++ . .+.+|..+..+++|++|++++|.+++......+..+++|+
T Consensus 268 ~~~~L~~L~l~~~-------------------------~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-------------------------G-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CCTTCCEEEETTC-------------------------C-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred ccccccccCcccc-------------------------c-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3444444444443 2 1233444444445555555544443322222233444555
Q ss_pred EEeccCCccccccCccccCcccccceeccc-----------cccccc-ccccccCCCCCcEEEccCCcccCccCccccC-
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKN-----------NHFTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGN- 318 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~- 318 (557)
+|+++++...+.++.....+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 555542211111222223344455555552 233322 1111233455555555555555544444443
Q ss_pred CCCCcEEEcC----CCcCCCC-----cchhhccCCCCcEEEccCcc--ccccccccc--CCCCccEEEccCCcccc-cch
Q 042089 319 FSYLDVLLMS----KNHLEGN-----IPVQINNFRQLEILYLSENR--LFGSIASFL--NLSSIMHLYLQKNALSG-QIP 384 (557)
Q Consensus 319 ~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~i~~~~--~~~~L~~L~L~~n~l~~-~~p 384 (557)
+++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+... .+++|++|++++|++++ .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5555555553 3444442 33334555666666665432 333222211 35556666666666554 234
Q ss_pred hhhhcCCCCcEEeCCCCcccccC-CccccCCCCccEEEcCCCcccccCCccc-cCCCCCCEEEc
Q 042089 385 STLLRSTELLTLDLRDNKFFGRI-PHQINKHSELRVLLLRGNYLQGEIPIAL-CQLQKLRILDL 446 (557)
Q Consensus 385 ~~l~~~~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~~l-~~l~~L~~Ldl 446 (557)
..+..+++|++|++++|++++.. +..+..+++|+.|+|++|++++.....+ ..++.+.+..+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 44455666666666666655442 2233445666666666666654432222 24454444333
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=254.19 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=172.1
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECc
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 182 (557)
++++++++++.+..+|..+. +++++|++++|++++..+.. +.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 78888888888888876543 57888888888888544433 3578888888888888777644455677777788887
Q ss_pred CCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeee-ecCcccccCCCCCcEEeccCCccc
Q 042089 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-DLSATSVNGCASLEYLDVSENNFY 261 (557)
Q Consensus 183 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (557)
+|+++ .+|..++ ++|+.|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 77776 5665542 567777777777776555566777777777777776642 122233445666666666666654
Q ss_pred cccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc
Q 042089 262 GHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341 (557)
Q Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 341 (557)
. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 332221 45555555555555444444555555555555555555444444444555555555555444 4444444
Q ss_pred cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhh------cCCCCcEEeCCCCcccc--cCCccccC
Q 042089 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLL------RSTELLTLDLRDNKFFG--RIPHQINK 413 (557)
Q Consensus 342 ~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~L~~N~l~~--~~p~~l~~ 413 (557)
.+++|++| ++++|++++..+..+. ..+.++.+++++|++.. ..|.++..
T Consensus 261 ~l~~L~~L-----------------------~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 261 DHKYIQVV-----------------------YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp TCSSCCEE-----------------------ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred cCCCcCEE-----------------------ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 44444444 4444444433333332 13556677777776642 34556666
Q ss_pred CCCccEEEcCCCc
Q 042089 414 HSELRVLLLRGNY 426 (557)
Q Consensus 414 l~~L~~L~L~~N~ 426 (557)
+..++.++|++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 7777777777764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=242.17 Aligned_cols=251 Identities=19% Similarity=0.218 Sum_probs=173.6
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
+.++.+++.++ .+|..+ .+++++|++++|.++...+..+.++++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------ 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------ 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------------------
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------------------
Confidence 34555555554 445433 24555555555555532222345555555555555554311
Q ss_pred CCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccC-ccccCCCCCcEEEcCCCcCCCC
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 68 -----~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 68 -----GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp -----EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred -----cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 111233334455555555555554 344456666777777777777765544 4667777777777777777777
Q ss_pred cchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccC
Q 042089 336 IPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413 (557)
Q Consensus 336 ~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~ 413 (557)
.+..+..+++|++|++++|.+++ .+|..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 77777777888888888888776 345444 7888888888888888877888889999999999999998877778888
Q ss_pred CCCccEEEcCCCcccccCCccccCCC-CCCEEEccCCcCcCCc
Q 042089 414 HSELRVLLLRGNYLQGEIPIALCQLQ-KLRILDLSHNKLNGSI 455 (557)
Q Consensus 414 l~~L~~L~L~~N~l~g~ip~~l~~l~-~L~~Ldls~N~l~g~i 455 (557)
+++|+.|++++|++++..|..+..++ +|+.|++++|++++..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999999999998898885 8999999999998764
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=253.15 Aligned_cols=274 Identities=20% Similarity=0.202 Sum_probs=163.3
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS 256 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls 256 (557)
...+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++ ++...+..+++|++|+++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECC
Confidence 33455555544 4454432 355555555555554444455555555555555555553 222233455555555555
Q ss_pred CCccccccCccccCcccccceeccccccccccc-ccccCCCCCcEEEccCC-cccCccCccccCCCCCcEEEcCCCcCCC
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKNHLEG 334 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~n~l~~ 334 (557)
+|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..+.++++|++|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 555554333334555556666666655553222 24555666666666665 3444445556666666666666666665
Q ss_pred CcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhh---hcCCCCcEEeCCCCcccc----c
Q 042089 335 NIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTL---LRSTELLTLDLRDNKFFG----R 406 (557)
Q Consensus 335 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~L~~N~l~~----~ 406 (557)
..|..+..+++|++|++++|.+....+... .+++|++|++++|++++..+..+ ..++.++.++++++.+++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 556666666666666666666543222222 45666666666666665433322 235667777777777765 4
Q ss_pred CCccccCCCCccEEEcCCCcccccCCcc-ccCCCCCCEEEccCCcCcCCcC
Q 042089 407 IPHQINKHSELRVLLLRGNYLQGEIPIA-LCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6778888888999999999988 66665 5889999999999999998776
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=245.75 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=131.3
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
++++.|++++|.++ .+|..++++++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 45555555555555555555554 444332 34455555555555444 3444444444444444
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
+++|++.+.+|..+.. . .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 4444444444433221 0 00111223566666666666665 555556666666666666666665
Q ss_pred ccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL 438 (557)
Q Consensus 359 ~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l 438 (557)
..+.+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.+++.+++|+.|+|++|++.+.+|..+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 33333356666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCEEEccCCcCc
Q 042089 439 QKLRILDLSHNKLN 452 (557)
Q Consensus 439 ~~L~~Ldls~N~l~ 452 (557)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 66666666655443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=242.66 Aligned_cols=283 Identities=21% Similarity=0.204 Sum_probs=188.6
Q ss_pred CCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcc--cCCccccCCCCCcEEE
Q 042089 152 LEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG--NIPYSIGEMKELFLLD 229 (557)
Q Consensus 152 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 229 (557)
-+.++++++.++.. |....++|++|++++|.++ .+|..++..+++|++|++++|.++. ..+..+..+++|++|+
T Consensus 9 ~~~l~c~~~~l~~i---p~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLTSV---PTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCSSC---CSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCEEEcCCCCcccC---CCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 35788888877654 4444578999999999998 7777665679999999999999873 3466777899999999
Q ss_pred cCCCeeeeecCcccccCCCCCcEEeccCCccccccC-ccccCcccccceecccccccccccccccCCCCCcEEEccCCcc
Q 042089 230 LSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF-PTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
+++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 9999987 55554 4568888888888888765443 3455666666666666666655555555556666666666655
Q ss_pred cC-ccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SG-HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
++ .+|..+..+++|++|++++|.+++..|..+.. +++|++|++++|++++..+..+
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----------------------LSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----------------------CTTCCEEECTTSCCSBCCSGGG
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-----------------------CCCCCEEECCCCccCccChhhc
Confidence 54 34555555555555555555554444444444 4555555555555554445556
Q ss_pred hcCCCCcEEeCCCCcccccCCccccCCC-CccEEEcCCCcccccCCcc--ccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 388 LRSTELLTLDLRDNKFFGRIPHQINKHS-ELRVLLLRGNYLQGEIPIA--LCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 388 ~~~~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~g~ip~~--l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
..+++|++|++++|++++..|..+..++ +|++|+|++|++++..+.. ..-+...+.+....+.+.+..|+.++...
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 6777777888888877777777777764 7888888888877543210 11122344455667777777777665543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=244.66 Aligned_cols=255 Identities=20% Similarity=0.202 Sum_probs=177.9
Q ss_pred CccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 175 FLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
+|++|++++|.+++..+..+ ..+++|+.|++++|.+++..|..+.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 44445555554442222223 23566666666666666555556666666666666666665 45544445666666777
Q ss_pred ccCCccccccC-ccccCcccccceecccc-cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcC
Q 042089 255 VSENNFYGHIF-PTYMNLTQLRGLYLKNN-HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 255 Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l 332 (557)
+++|.+.+..+ ..+..+++|++|++++| .+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 76666654322 35666777777777777 35555566677778888888888888877788888888888888888887
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccc----cCCCCccEEEccCCcccc----cchhhhhcCCCCcEEeCCCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASF----LNLSSIMHLYLQKNALSG----QIPSTLLRSTELLTLDLRDNKFF 404 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~----~~~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~N~l~ 404 (557)
+...+..+..+++|+.|++++|.+++..+.. .....++.++++++.+++ .+|..+..+++|++|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 6444444556788888888888887644322 246778889999998876 47888999999999999999997
Q ss_pred ccCCcc-ccCCCCccEEEcCCCcccccCC
Q 042089 405 GRIPHQ-INKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 405 ~~~p~~-l~~l~~L~~L~L~~N~l~g~ip 432 (557)
.+|.+ ++.+++|++|+|++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67766 5899999999999999997654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=240.88 Aligned_cols=235 Identities=18% Similarity=0.211 Sum_probs=197.4
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLE 251 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (557)
....++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+ ..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCC
Confidence 4578999999999998 89998875 999999999999999 89999999999999999999998 787764 6899999
Q ss_pred EEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc
Q 042089 252 YLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
+|++++|.+.+.+|..+... ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred EEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 99999999988888766541 12233555677778888877777 677777778888888888888
Q ss_pred CCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc
Q 042089 332 LEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ 410 (557)
Q Consensus 332 l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~ 410 (557)
+++ +|..+..+++|++|++++|.+.+.+|..+ .+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|.+
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 774 55567888888888888888888777655 7888888888888888889988999999999999999999999999
Q ss_pred ccCCCCccEEEcCCCccc
Q 042089 411 INKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 411 l~~l~~L~~L~L~~N~l~ 428 (557)
++.+++|+.+++..+.+.
T Consensus 297 l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGSCTTCEEECCGGGSC
T ss_pred HhhccCceEEeCCHHHHH
Confidence 999999999998877665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-29 Score=248.65 Aligned_cols=247 Identities=20% Similarity=0.192 Sum_probs=194.5
Q ss_pred ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee-eecCcccc------cCCCCCcEEeccCCccccccCccc--
Q 042089 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS-GDLSATSV------NGCASLEYLDVSENNFYGHIFPTY-- 268 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~~~~-- 268 (557)
.++|+.+++++|.+ .+|..+... |+.|++++|.+. +.++.... ..+++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45677777777777 566655544 777788887773 44554332 147788888888888887777765
Q ss_pred cCcccccceecccccccccccccccCC-----CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC--cchhh-
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNS-----HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IPVQI- 340 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~-----~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~--~~~~l- 340 (557)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7788888888888888866 6666655 8899999999999888888888999999999999988765 34444
Q ss_pred -ccCCCCcEEEccCccccc--ccc-ccc-CCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 341 -NNFRQLEILYLSENRLFG--SIA-SFL-NLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 341 -~~l~~L~~L~L~~n~l~~--~i~-~~~-~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
..+++|++|++++|.+++ .++ ..+ .+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|.++.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 788999999999999874 223 222 67899999999999998775 45667889999999999997 8888877
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|++|+|++|++++. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999966 66 88999999999999999863
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-30 Score=282.87 Aligned_cols=234 Identities=15% Similarity=0.057 Sum_probs=110.9
Q ss_pred CCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc-cCccccCcccccceeccc---------ccc
Q 042089 215 IPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH-IFPTYMNLTQLRGLYLKN---------NHF 284 (557)
Q Consensus 215 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~~ 284 (557)
++..+..+++|++|++++|.+++.........+++|++|++++| +... ++.....+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 33333345555555555555443322233344555555555554 2211 111122345555555522 233
Q ss_pred ccccccccc-CCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcC--C----CcCCC-----CcchhhccCCCCcEEEc
Q 042089 285 TGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMS--K----NHLEG-----NIPVQINNFRQLEILYL 351 (557)
Q Consensus 285 ~~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~--~----n~l~~-----~~~~~l~~l~~L~~L~L 351 (557)
++.....+. .+++|++|+++.|.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 322222221 255666666655555554444443 35566666665 2 33331 12222455566666666
Q ss_pred cCcccccccc-ccc-CCCCccEEEccCCcccccchhhh-hcCCCCcEEeCCCCcccccCCc-cccCCCCccEEEcCCCcc
Q 042089 352 SENRLFGSIA-SFL-NLSSIMHLYLQKNALSGQIPSTL-LRSTELLTLDLRDNKFFGRIPH-QINKHSELRVLLLRGNYL 427 (557)
Q Consensus 352 ~~n~l~~~i~-~~~-~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l 427 (557)
++ .+++... ... .+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 55 3333222 222 25566666666666655444333 4566666666666666444333 233456666666666666
Q ss_pred cccCCccc-cCCCCCCEEEccCCc
Q 042089 428 QGEIPIAL-CQLQKLRILDLSHNK 450 (557)
Q Consensus 428 ~g~ip~~l-~~l~~L~~Ldls~N~ 450 (557)
+......+ ..+++|++..+..+.
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CHHHHHHHHHhCCCCEEEEecCCC
Confidence 44333333 345555555554443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-29 Score=247.84 Aligned_cols=267 Identities=18% Similarity=0.195 Sum_probs=216.9
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
++..+++.+.+. ..+..+...+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 455566666654 3444555557789999999999987777888899999999999999886554 567889999999
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887533 3378999999999988665543 57899999999999988888888999999999999999987
Q ss_pred cchhhc-cCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 IPVQIN-NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~~~~l~-~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
.+..+. .+++|++|++++|.+++. +....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.++..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 777764 789999999999998764 555568899999999999985 4555888999999999999997 578888889
Q ss_pred CCccEEEcCCCccc-ccCCccccCCCCCCEEEcc-CCcCcCCcCc
Q 042089 415 SELRVLLLRGNYLQ-GEIPIALCQLQKLRILDLS-HNKLNGSIPS 457 (557)
Q Consensus 415 ~~L~~L~L~~N~l~-g~ip~~l~~l~~L~~Ldls-~N~l~g~ip~ 457 (557)
++|+.|++++|+++ +.+|..+..+++|+.++++ .+.++|..|.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999998 7788888899999999998 4556666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=243.64 Aligned_cols=249 Identities=18% Similarity=0.145 Sum_probs=163.2
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
...++.++..++ .+|..+ .++++.|++++|.+++..|..|.++++|++|++++|.+.+ ++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEEC
Confidence 345555555555 455544 2456666666666665555555666666666666665552 23233344555555555
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.++ +..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|+..+.
T Consensus 131 ~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 131 FDNWLT------------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CSSCCS------------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCcCC------------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 555544 33334444555555555555555544444555566666666665333323
Q ss_pred cc-hhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 IP-VQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
++ ..+..+++|++|++++|.+++ +|.+..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.++..+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 33 346667777777777777764 4556677888888888888888788888888888888888888888888888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8888888888888876667778888888888888887654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-30 Score=279.73 Aligned_cols=421 Identities=15% Similarity=0.107 Sum_probs=302.6
Q ss_pred CCCCcCEEeCCCCCCccc---CC------------ccCCCCCCCCEEECCCCcCCccCchhcc-CCCCCCEEeCcCc-cc
Q 042089 2 KLKNLTELDLRENNLEGQ---LP------------WRLSDLTGLKVFDISSNQLSGNLPSVIA-NLTSLEYLVLSDN-NF 64 (557)
Q Consensus 2 ~l~~L~~L~Ls~n~l~~~---~~------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l 64 (557)
++++|++|+++++..... .| .....+++|++|+|++|.+++..+..+. .+++|++|+|++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 368899999999863221 22 1234688999999999999988777776 6999999999999 55
Q ss_pred CcccChhhhcCCCCCcEEEecCccCcccccC---CCCCCCCcccEEECCCCC--C--CCcChhhhCCCCCcEEEccCCcC
Q 042089 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKT---ENWIPTFQLKVLQLPNCS--L--KVIPSFLLHQYNLKFLDLSSNKL 137 (557)
Q Consensus 65 ~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~n~--l--~~ip~~l~~~~~L~~L~Ls~n~l 137 (557)
+.........++++|++|++++|.+.+..+. .....+++|++|++++|. + ..++.....+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 5432334566899999999999986543221 123467799999999997 2 22344456789999999999843
Q ss_pred cCCCcHHHhhcCCCCCEEEccCcc-------ccCcccCCcccCCCccEE-ECcCCcCcCCCchhHhhhccCCcEEeCCCC
Q 042089 138 VGNFPTWLMQNNTNLEVLRLSNNS-------FSGILQLPKVKHDFLRHL-DISNNNLIGTLPQNMGTVLQKLMLIDISKN 209 (557)
Q Consensus 138 ~~~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 209 (557)
.+.+|..+ .++++|+.|+++.+. +.+.. ..+..+++|+.+ .+.... .+.++..+ ..+++|+.|++++|
T Consensus 224 ~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~-~~~l~~~~-~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 224 LEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAV-PAYLPAVY-SVCSRLTTLNLSYA 299 (594)
T ss_dssp HHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCC-GGGGGGGH-HHHTTCCEEECTTC
T ss_pred HHHHHHHH-hcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccc-hhhHHHHH-HhhCCCCEEEccCC
Confidence 33466655 589999999976553 22221 123478889998 444332 23445444 35899999999999
Q ss_pred cCcccCC-ccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC---------CccccccCcccc-Cccccccee
Q 042089 210 NFEGNIP-YSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE---------NNFYGHIFPTYM-NLTQLRGLY 278 (557)
Q Consensus 210 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~---------n~l~~~~~~~~~-~l~~L~~L~ 278 (557)
.+++... ..+..+++|++|++++| +.+.....+...+++|++|++.. +.+++.....+. .+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 9775433 33568899999999988 54333333445689999999943 445443333333 478999999
Q ss_pred ccccccccccccccc-CCCCCcEEEcc--C----CcccC-----ccCccccCCCCCcEEEcCCCcCCCCcchhhcc-CCC
Q 042089 279 LKNNHFTGKIKAGLL-NSHGLVVLDIS--N----NLLSG-----HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN-FRQ 345 (557)
Q Consensus 279 L~~n~~~~~~~~~l~-~~~~L~~L~Ls--~----n~l~~-----~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~ 345 (557)
+..+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..++. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 999999876665554 58999999999 3 45552 2233366789999999987 777776666766 899
Q ss_pred CcEEEccCcccccccc-cc-cCCCCccEEEccCCcccccchh-hhhcCCCCcEEeCCCCcccccCCccc-cCCCCccEEE
Q 042089 346 LEILYLSENRLFGSIA-SF-LNLSSIMHLYLQKNALSGQIPS-TLLRSTELLTLDLRDNKFFGRIPHQI-NKHSELRVLL 421 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~-~~-~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 421 (557)
|+.|++++|.+++... .. ..+++|++|++++|.+++..+. .+..+++|++|++++|+++......+ ..++.|++..
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999876433 33 2689999999999999765544 44568999999999999976655666 5688998888
Q ss_pred cCCCccc
Q 042089 422 LRGNYLQ 428 (557)
Q Consensus 422 L~~N~l~ 428 (557)
+..+...
T Consensus 538 ~~~~~~~ 544 (594)
T 2p1m_B 538 IDERGAP 544 (594)
T ss_dssp ECSSSCG
T ss_pred ecCCCcc
Confidence 8776544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=243.30 Aligned_cols=248 Identities=20% Similarity=0.200 Sum_probs=162.8
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEec
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (557)
.+.++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456666666666 6666552 56677777777776666666666777777777776665 344444455666666666
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~ 335 (557)
++|.+++..+..+..+++|+ +|++++|.+++..+..+..+++|++|++++|+..+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~------------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLK------------------------ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCC------------------------EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCcCCeeCHhHhhccccCc------------------------eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 66655543333444444444 455555544444444455555555555555332222
Q ss_pred c-chhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 336 I-PVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 336 ~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
+ +..+..+++|++|++++|.++ .+|.+..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.++..+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred eCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 2 234566666666666666665 45555577778888888888887777888888888888888888887778888888
Q ss_pred CCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 415 SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 415 ~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 888888888888886666677888888888888888764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=231.15 Aligned_cols=255 Identities=19% Similarity=0.163 Sum_probs=141.3
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 257 (557)
+++.+++.++ .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------------- 69 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------------- 69 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---------------------
Confidence 4444444444 344332 234555555555555444444455555555555555444
Q ss_pred CccccccCccccCcccccceeccccc-ccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc
Q 042089 258 NNFYGHIFPTYMNLTQLRGLYLKNNH-FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336 (557)
Q Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 336 (557)
+..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus 70 ----~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 70 ----RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp ----EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ----eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 3333344444444444444443 33333444555555555555555555555555555566666666666665555
Q ss_pred chhhccCCCCcEEEccCccccccccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCC
Q 042089 337 PVQINNFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415 (557)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~ 415 (557)
+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+.++..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 55556666666666666666544433 22566666666666666666666677777777777777777665555667777
Q ss_pred CccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 416 ~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
+|+.|++++|++....+.. .-...++.++.+.+.+.+..|..+...
T Consensus 226 ~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp TCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred ccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCc
Confidence 7777777777776543321 011223344466677777777766543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=244.03 Aligned_cols=248 Identities=21% Similarity=0.175 Sum_probs=205.5
Q ss_pred cCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcC-cccCCcccc-------CCCCCcEEEcCCCeeeeecCccc
Q 042089 172 KHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF-EGNIPYSIG-------EMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
..++|+.+++++|.+ .+|..++.. |+.|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 445678888888888 778877643 78888888888 456666665 78899999999999988888765
Q ss_pred c-cCCCCCcEEeccCCccccccCccccCc-----ccccceecccccccccccccccCCCCCcEEEccCCcccCc--cCcc
Q 042089 244 V-NGCASLEYLDVSENNFYGHIFPTYMNL-----TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH--IPCW 315 (557)
Q Consensus 244 ~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~ 315 (557)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 3 6789999999999999877 7777666 8999999999999988888999999999999999998775 3444
Q ss_pred c--cCCCCCcEEEcCCCcCCC--Ccc-hhhccCCCCcEEEccCcccccccc--cccCCCCccEEEccCCcccccchhhhh
Q 042089 316 I--GNFSYLDVLLMSKNHLEG--NIP-VQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 316 l--~~~~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++.+| .+..+++|++|++++|+++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 4 789999999999999984 233 344678999999999999998764 3447899999999999998 7887776
Q ss_pred cCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
++|++|++++|++++. |. +..+++|++|+|++|++++.
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999866 66 88999999999999999863
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=225.65 Aligned_cols=227 Identities=21% Similarity=0.205 Sum_probs=202.6
Q ss_pred cEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccC
Q 042089 226 FLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305 (557)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~ 305 (557)
+.++.+++.++ .+|... .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777766 556533 46788888888888877777788999999999999999988899999999999999999
Q ss_pred Cc-ccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccc
Q 042089 306 NL-LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 306 n~-l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~ 383 (557)
|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 777778999999999999999999999889999999999999999999987666644 8999999999999999777
Q ss_pred hhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 384 PSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 384 p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 7789999999999999999999999999999999999999999998777789999999999999999987654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=247.80 Aligned_cols=235 Identities=19% Similarity=0.190 Sum_probs=186.5
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
++|+.|++++|.+++..|..++.+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 477788888887777666777788888888888887775554 4567788888888887765332 26788888
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLF 357 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 357 (557)
+++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888887665543 47788999999998888888888888999999999999888887776 7889999999999887
Q ss_pred cccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc-ccCCcccc
Q 042089 358 GSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ-GEIPIALC 436 (557)
Q Consensus 358 ~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-g~ip~~l~ 436 (557)
+. +....+++|++|+|++|++++.. ..+..+++|+.|++++|++++ +|.+++.+++|+.|++++|.+. +.+|..+.
T Consensus 183 ~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV-KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE-ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc-cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 65 44446888999999999988644 458888889999999999874 7778888888999999999888 67777788
Q ss_pred CCCCCCEEEcc
Q 042089 437 QLQKLRILDLS 447 (557)
Q Consensus 437 ~l~~L~~Ldls 447 (557)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88888888876
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=234.71 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=198.4
Q ss_pred CCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEc
Q 042089 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 151 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 230 (557)
..+.++..+..++. +|....++++.|++++|++++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~---iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLRE---VPDGISTNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSS---CCSCCCTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCc---CCCCCCCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 45678888877765 4545557899999999999965556664 6999999999999999888889999999999999
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccc-cccccCCCCCcEEEccCCccc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKI-KAGLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~~~~L~~L~Ls~n~l~ 309 (557)
++|+++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999998 677766788999999999999998777778889999999999985544444 446778889999999999887
Q ss_pred CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhh
Q 042089 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 310 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
. +| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+ .+++|++|+|++|++++..+..+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4 44 36778888888888888887778888888888888888888876655544 677777777777777766666677
Q ss_pred cCCCCcEEeCCCCccc
Q 042089 389 RSTELLTLDLRDNKFF 404 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~ 404 (557)
.+++|+.|++++|++.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 7777777777777763
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=235.66 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=195.6
Q ss_pred CCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEc
Q 042089 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 151 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 230 (557)
..+.++.++..++. +|....+++++|++++|++++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~---iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE---VPQGIPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSS---CCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCc---cCCCCCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45678888777765 3444557899999999999976666665 5999999999999999888899999999999999
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccccccc-ccccCCCCCcEEEccCCccc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLS 309 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~~~~L~~L~Ls~n~l~ 309 (557)
++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|++|++++|.++
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999998 6777777889999999999999987666778889999999999854444444 45778888888888888887
Q ss_pred CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhh
Q 042089 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLL 388 (557)
Q Consensus 310 ~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~ 388 (557)
+. | .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+ .+++|++|+|++|++++..+..+.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 54 3 46777888888888888887777778888888888888887776555444 677777777777777765556666
Q ss_pred cCCCCcEEeCCCCccc
Q 042089 389 RSTELLTLDLRDNKFF 404 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~ 404 (557)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 7777777777777663
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-28 Score=239.22 Aligned_cols=246 Identities=23% Similarity=0.219 Sum_probs=182.8
Q ss_pred CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~-----~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIETL 104 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE-----ECTTCCEE
T ss_pred CCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc-----CCCCcCEE
Confidence 4555556666655544444443 46777777777777765443 6777777777777777763 22 23677788
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcC
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHL 332 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l 332 (557)
++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 88887776654433 56788888888888877777777788888888888888877666663 678888888888888
Q ss_pred CCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc-ccCCccc
Q 042089 333 EGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF-GRIPHQI 411 (557)
Q Consensus 333 ~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~-~~~p~~l 411 (557)
++. +. ...+++|++|++++|.+++..+.+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ +.+|.++
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 754 32 33478899999999998876666668899999999999998 57888889999999999999998 7888999
Q ss_pred cCCCCccEEEcCC-CcccccCCcc
Q 042089 412 NKHSELRVLLLRG-NYLQGEIPIA 434 (557)
Q Consensus 412 ~~l~~L~~L~L~~-N~l~g~ip~~ 434 (557)
..+++|+.+++++ +.++|..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 9999999999984 4566665543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=238.50 Aligned_cols=267 Identities=24% Similarity=0.288 Sum_probs=166.5
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
+++|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|+|++|.++ .+|. .+
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l--------- 100 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LP--------- 100 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CC---------
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CC---------
Confidence 455555555555 4444443 45555555555555 3333 3455555555555554 3332 33
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCc
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 165 (557)
++|++|++++|.+..+|. .+++|+.|++++|+++ .+|. .+++|++|++++|.+++.
T Consensus 101 ----------------~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 101 ----------------PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp ----------------TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC
T ss_pred ----------------CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc
Confidence 455555555555555554 3455666666666665 3443 246666666666666553
Q ss_pred ccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCccccc
Q 042089 166 LQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245 (557)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 245 (557)
.. .+.+|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.
T Consensus 157 ~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---- 218 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---- 218 (622)
T ss_dssp CC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----
T ss_pred CC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----
Confidence 21 2355667777777666 355 235667777777777763 4432 356777777777776 4443
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+.++++|+.|
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 24677788888777765 33 34577888888888877 4554 4678888888888888 678888888889999
Q ss_pred EcCCCcCCCCcchhhccCC
Q 042089 326 LMSKNHLEGNIPVQINNFR 344 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~ 344 (557)
++++|.+++..|..+..++
T Consensus 290 ~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 290 NLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhcc
Confidence 9999988888888776554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=236.17 Aligned_cols=263 Identities=23% Similarity=0.285 Sum_probs=210.1
Q ss_pred CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEE
Q 042089 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108 (557)
Q Consensus 29 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 108 (557)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-----------------------------~l~~L~~L~ 87 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-----------------------------LPPELRTLE 87 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC-----------------------------CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC-----------------------------cCCCCCEEE
Confidence 4666667666666 5565554 56666666666665 3442 234677777
Q ss_pred CCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcC
Q 042089 109 LPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIG 188 (557)
Q Consensus 109 L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 188 (557)
+++|.+..+|. .+++|++|++++|+++ .+|. .+++|+.|++++|.+++... .+++|++|++++|.++
T Consensus 88 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~- 154 (622)
T 3g06_A 88 VSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA- 154 (622)
T ss_dssp ECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-
T ss_pred cCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC-
Confidence 77788877887 6789999999999999 4665 57899999999999987532 3589999999999998
Q ss_pred CCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccc
Q 042089 189 TLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTY 268 (557)
Q Consensus 189 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 268 (557)
.+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. ..++|+.|++++|.++. +|.
T Consensus 155 ~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~-- 218 (622)
T 3g06_A 155 SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPA-- 218 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCC--
T ss_pred CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCC--
Confidence 4554 25789999999999985 66 45789999999999998 4554 34799999999999974 443
Q ss_pred cCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
.+++|++|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred -CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 34889999999999986 55 346899999999999984 565 5789999999999999 78999999999999
Q ss_pred EEccCcccccccccc
Q 042089 349 LYLSENRLFGSIASF 363 (557)
Q Consensus 349 L~L~~n~l~~~i~~~ 363 (557)
|++++|++++.+|..
T Consensus 289 L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 289 VNLEGNPLSERTLQA 303 (622)
T ss_dssp EECCSCCCCHHHHHH
T ss_pred EEecCCCCCCcCHHH
Confidence 999999999877654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=237.76 Aligned_cols=229 Identities=24% Similarity=0.201 Sum_probs=198.4
Q ss_pred cCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc
Q 042089 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299 (557)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~ 299 (557)
..+++|+.|++++|.+.+ +++..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 345689999999999985 444556789999999999999987665 8899999999999999985433 38999
Q ss_pred EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc--CCCCccEEEccCC
Q 042089 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL--NLSSIMHLYLQKN 377 (557)
Q Consensus 300 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~--~~~~L~~L~L~~n 377 (557)
+|++++|.+++..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+ .+++|++|+|++|
T Consensus 103 ~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999999999877654 5789999999999999999999999999999999999999776654 6899999999999
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCc-CCcC
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLN-GSIP 456 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip 456 (557)
.+++..+ ...+++|++|++++|++++. |..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9997633 44689999999999999864 5558899999999999999995 7888999999999999999999 6777
Q ss_pred ccccccc
Q 042089 457 SCFANVL 463 (557)
Q Consensus 457 ~~~~~l~ 463 (557)
..+..+.
T Consensus 256 ~~~~~l~ 262 (487)
T 3oja_A 256 DFFSKNQ 262 (487)
T ss_dssp HHHTTCH
T ss_pred HHHHhCC
Confidence 7666553
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=209.59 Aligned_cols=207 Identities=20% Similarity=0.191 Sum_probs=136.1
Q ss_pred CCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcC
Q 042089 249 SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~ 328 (557)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444333344445555555555555554444455555666666666666665555556666666666666
Q ss_pred CCcCCCCcchhhccCCCCcEEEccCccccc-cccccc-CCCCccEEEccCCcccccchhhhhcCCCCc----EEeCCCCc
Q 042089 329 KNHLEGNIPVQINNFRQLEILYLSENRLFG-SIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELL----TLDLRDNK 402 (557)
Q Consensus 329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~----~L~L~~N~ 402 (557)
+|.+++..+..+..+++|++|++++|.+++ .+|..+ .+++|++|++++|++++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 666665555556666666666666666655 234433 667777777777777766666666666666 89999999
Q ss_pred ccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 403 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9765554444 4589999999999997666678999999999999999998765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=207.12 Aligned_cols=224 Identities=19% Similarity=0.244 Sum_probs=121.8
Q ss_pred ECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc
Q 042089 180 DISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN 259 (557)
Q Consensus 180 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 259 (557)
+..+..++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 13 ~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp ECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc
Confidence 33333433 455443 245666666666666555556666666666666666665 3333334556666666666666
Q ss_pred cccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccC-ccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 260 FYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG-HIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 655555555555666666666665555444445555566666666665554 2455555555555555555555554444
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCcc-EEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCc
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIM-HLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSEL 417 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L 417 (557)
.+..+++|+ .+. +|++++|++++..+..+ ...+|+.|++++|++++..+..+..+++|
T Consensus 168 ~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 168 DLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred Hhhhhhhcc--------------------ccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccc
Confidence 444444444 111 45555555543333222 22356666666666654444445556666
Q ss_pred cEEEcCCCcccc
Q 042089 418 RVLLLRGNYLQG 429 (557)
Q Consensus 418 ~~L~L~~N~l~g 429 (557)
+.|++++|++++
T Consensus 227 ~~L~l~~N~~~c 238 (276)
T 2z62_A 227 QKIWLHTNPWDC 238 (276)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCcccc
Confidence 666666666653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=209.19 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=140.5
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 347 (557)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34445555555555555431 2455666777777777777766666667777777777777777766666677777777
Q ss_pred EEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc
Q 042089 348 ILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 348 ~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 426 (557)
+|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..|..++.+++|+.|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 77777777776555543 67888888888888887777778888999999999999988888888899999999999998
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 427 LQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 427 l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
+.+. ++.|+.++++.|.++|.+|.+++++.
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 8744 56789999999999999999888764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=209.32 Aligned_cols=226 Identities=18% Similarity=0.158 Sum_probs=164.5
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecc
Q 042089 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (557)
+..+++..+.+... .....+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 33444444444332 23445566666666666654 2322 34566666666666666542 356667777777777
Q ss_pred cccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccc
Q 042089 281 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSI 360 (557)
Q Consensus 281 ~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i 360 (557)
+|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77777666666777788888888888888777777788888888888888888777777788888888888888888766
Q ss_pred cccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCC
Q 042089 361 ASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ 439 (557)
Q Consensus 361 ~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 439 (557)
+..+ .+++|++|++++|++++..|..+..+++|++|++++|++.+. ++.|+.++++.|+++|.+|.+++.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 6554 788888899999988887777788899999999999987654 55788999999999999998877655
Q ss_pred C
Q 042089 440 K 440 (557)
Q Consensus 440 ~ 440 (557)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=228.91 Aligned_cols=188 Identities=20% Similarity=0.259 Sum_probs=147.1
Q ss_pred cCcccccceecccccccc----cccccccCCCCCcEEEccCCcccCccCcccc----CC---------CCCcEEEcCCCc
Q 042089 269 MNLTQLRGLYLKNNHFTG----KIKAGLLNSHGLVVLDISNNLLSGHIPCWIG----NF---------SYLDVLLMSKNH 331 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~----~~---------~~L~~L~l~~n~ 331 (557)
..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456677777777777665 3566667777888888888877644333333 33 788888888888
Q ss_pred CC-CCcc---hhhccCCCCcEEEccCcccc--c---ccc-cccCCCCccEEEccCCccc----ccchhhhhcCCCCcEEe
Q 042089 332 LE-GNIP---VQINNFRQLEILYLSENRLF--G---SIA-SFLNLSSIMHLYLQKNALS----GQIPSTLLRSTELLTLD 397 (557)
Q Consensus 332 l~-~~~~---~~l~~l~~L~~L~L~~n~l~--~---~i~-~~~~~~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~ 397 (557)
++ +.++ ..+..+++|++|++++|.++ | .++ .+..+++|++|+|++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 87 3444 46778889999999999887 3 344 4447899999999999996 57888999999999999
Q ss_pred CCCCccccc----CCcccc--CCCCccEEEcCCCcccc----cCCccc-cCCCCCCEEEccCCcCcCCcC
Q 042089 398 LRDNKFFGR----IPHQIN--KHSELRVLLLRGNYLQG----EIPIAL-CQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 398 L~~N~l~~~----~p~~l~--~l~~L~~L~L~~N~l~g----~ip~~l-~~l~~L~~Ldls~N~l~g~ip 456 (557)
+++|++++. +|.++. .+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999876 566763 48999999999999998 588887 678999999999999998765
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=197.39 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=147.8
Q ss_pred CcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC
Q 042089 250 LEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329 (557)
Q Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~ 329 (557)
.++++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555542 333222 3556666666666655455566666777777777766655555566677777777777
Q ss_pred CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 330 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77776666666777777777777777776555544 67888888888888886666668888999999999999987777
Q ss_pred ccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 409 HQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 409 ~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.-+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 778889999999999999997666678899999999999999987644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=217.73 Aligned_cols=253 Identities=18% Similarity=0.231 Sum_probs=161.3
Q ss_pred ccEEECcCCcCcCCCchhHhhhc--cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVL--QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++.++++++.+. +..+. .+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 49 ~~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~-------------- 109 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST-------------- 109 (336)
T ss_dssp SSEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH--------------
T ss_pred heeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH--------------
Confidence 556666666554 22222 23 5566666666665544433 334555555555555544321
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCC-cccCc-cCccccCCCCCcEEEcCCC-
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNN-LLSGH-IPCWIGNFSYLDVLLMSKN- 330 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~-~p~~l~~~~~L~~L~l~~n- 330 (557)
++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus 110 ----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 110 ----------LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ----------HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ----------HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 3333444455555555555555555555566666666666666 45542 5555666777777777777
Q ss_pred cCCCC-cchhhccCC-CCcEEEccCc--ccc-ccccccc-CCCCccEEEccCCc-ccccchhhhhcCCCCcEEeCCCCc-
Q 042089 331 HLEGN-IPVQINNFR-QLEILYLSEN--RLF-GSIASFL-NLSSIMHLYLQKNA-LSGQIPSTLLRSTELLTLDLRDNK- 402 (557)
Q Consensus 331 ~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~i~~~~-~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~N~- 402 (557)
.+++. ++..+..++ +|++|++++| .++ +.++... .+++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 66654 566677777 8888888887 444 3444444 67888888888888 777777888889999999999984
Q ss_pred ccccCCccccCCCCccEEEcCCCcccccCCccccCC-CCCCEEEccCCcCcCCcCccccc
Q 042089 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL-QKLRILDLSHNKLNGSIPSCFAN 461 (557)
Q Consensus 403 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~~~~~ 461 (557)
++......++.+++|+.|++++| ++.. .+..+ ..+..|++++|++++..|+.+++
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 43333346788999999999998 4432 22222 23566678999999999987764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-25 Score=222.02 Aligned_cols=257 Identities=17% Similarity=0.156 Sum_probs=153.7
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCC----ccccCCC-CCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIP----YSIGEMK-ELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
++++.|.++|.+|..+. ..++|+.|++++|.+++..+ ..+..++ +|++|++++|.++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------------- 64 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----------------- 64 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-----------------
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-----------------
Confidence 44555555555544432 23345555555555554333 3444444 4555555555554
Q ss_pred eccCCccccccCccccCc-----ccccceecccccccccccccc----cCC-CCCcEEEccCCcccCccCcccc----C-
Q 042089 254 DVSENNFYGHIFPTYMNL-----TQLRGLYLKNNHFTGKIKAGL----LNS-HGLVVLDISNNLLSGHIPCWIG----N- 318 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l----~~~-~~L~~L~Ls~n~l~~~~p~~l~----~- 318 (557)
+..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. .
T Consensus 65 --------~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 65 --------FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp --------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred --------HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 3333333322 455555555555544433322 222 5666666666666655443332 2
Q ss_pred CCCCcEEEcCCCcCCCCc----chhhccCC-CCcEEEccCcccccccccc-----cCC-CCccEEEccCCccccc----c
Q 042089 319 FSYLDVLLMSKNHLEGNI----PVQINNFR-QLEILYLSENRLFGSIASF-----LNL-SSIMHLYLQKNALSGQ----I 383 (557)
Q Consensus 319 ~~~L~~L~l~~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~i~~~-----~~~-~~L~~L~L~~n~l~~~----~ 383 (557)
.++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+.. ..+ ++|++|+|++|.+++. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 246777777777766433 33344444 7777777777776644421 134 4788888888888753 5
Q ss_pred hhhhhc-CCCCcEEeCCCCcccccCC----ccccCCCCccEEEcCCCccccc-------CCccccCCCCCCEEEccCCcC
Q 042089 384 PSTLLR-STELLTLDLRDNKFFGRIP----HQINKHSELRVLLLRGNYLQGE-------IPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 384 p~~l~~-~~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g~-------ip~~l~~l~~L~~Ldls~N~l 451 (557)
+..+.. .++|++|++++|++++..+ ..+..+++|++|+|++|++.+. ++..+..+++|+.||+++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 566665 4589999999999877554 3446678899999999985533 344667888999999999999
Q ss_pred cCCcCccccc
Q 042089 452 NGSIPSCFAN 461 (557)
Q Consensus 452 ~g~ip~~~~~ 461 (557)
.+..|..+.+
T Consensus 297 ~~~~~~~~~~ 306 (362)
T 3goz_A 297 HPSHSIPISN 306 (362)
T ss_dssp CGGGCHHHHH
T ss_pred CCcchHHHHH
Confidence 8776655443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=196.63 Aligned_cols=178 Identities=26% Similarity=0.252 Sum_probs=118.5
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 444444444444444444455555555555555555543221 45555666666666655 455555666666666666
Q ss_pred Cccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 353 ENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 353 ~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+|++++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 666665444433 6677777777777777666666777888888888888887555556677888888888888888 77
Q ss_pred CccccCCCCCCEEEccCCcCcCC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|..+..+++|+.+++++|++...
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCS
T ss_pred ChhhcccccCCeEEeCCCCccCc
Confidence 88888888899999999988754
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=208.36 Aligned_cols=225 Identities=20% Similarity=0.196 Sum_probs=170.6
Q ss_pred CCcEEEcCCCeeeeecCccc--ccCCCCCcEEeccCCccccccCccc--cCcccccceeccccccccccc----ccccCC
Q 042089 224 ELFLLDLSRNKFSGDLSATS--VNGCASLEYLDVSENNFYGHIFPTY--MNLTQLRGLYLKNNHFTGKIK----AGLLNS 295 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~~ 295 (557)
.++.+.+.++.+........ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35555665555432111000 1124568888888888877777776 778888888888888876544 344568
Q ss_pred CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCC--cc--hhhccCCCCcEEEccCcccccccc--c-c-cCCC
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IP--VQINNFRQLEILYLSENRLFGSIA--S-F-LNLS 367 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~i~--~-~-~~~~ 367 (557)
++|++|++++|.+++..|..++.+++|++|++++|++.+. ++ .++..+++|++|++++|.++...+ . . ..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888898999999999999988753 22 234678899999999999863211 1 2 2678
Q ss_pred CccEEEccCCcccccchhhhhcC---CCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEE
Q 042089 368 SIMHLYLQKNALSGQIPSTLLRS---TELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRIL 444 (557)
Q Consensus 368 ~L~~L~L~~n~l~~~~p~~l~~~---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L 444 (557)
+|++|++++|++++..|..+..+ ++|++|++++|+++ .+|.++. ++|++|+|++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 99999999999998878777777 69999999999997 7788775 7999999999999964 43 5788999999
Q ss_pred EccCCcCcC
Q 042089 445 DLSHNKLNG 453 (557)
Q Consensus 445 dls~N~l~g 453 (557)
++++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999975
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=193.28 Aligned_cols=202 Identities=23% Similarity=0.231 Sum_probs=128.7
Q ss_pred CcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEcc
Q 042089 225 LFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDIS 304 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls 304 (557)
.+.++++++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344444444444 333322 1345555555555544444445555555556665555554444444556666666666
Q ss_pred CCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccc
Q 042089 305 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 305 ~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~ 383 (557)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 666666555566666677777777777766666666677777777777777765444433 6777777777777777666
Q ss_pred hhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 384 PSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 384 p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
+..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66677788888888888888766666677788888888888877643
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-24 Score=211.64 Aligned_cols=221 Identities=17% Similarity=0.146 Sum_probs=179.8
Q ss_pred CCcEEEcCCCeeeeecCcccccCC--CCCcEEeccCCccccccCccccCcccccceeccccccccc-ccccccCCCCCcE
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGC--ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK-IKAGLLNSHGLVV 300 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~~~~L~~ 300 (557)
.++.++++++.+.. ..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35667777766542 122334 6778888888877766554 45688999999999988866 7888889999999
Q ss_pred EEccCCcccCccCccccCCCCCcEEEcCCC-cCCCC-cchhhccCCCCcEEEccCc-ccccc-ccccc-CCC-CccEEEc
Q 042089 301 LDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGN-IPVQINNFRQLEILYLSEN-RLFGS-IASFL-NLS-SIMHLYL 374 (557)
Q Consensus 301 L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-i~~~~-~~~-~L~~L~L 374 (557)
|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++... .++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999999888999999999999999999 67763 7777889999999999999 88764 45544 788 9999999
Q ss_pred cCC--ccc-ccchhhhhcCCCCcEEeCCCCc-ccccCCccccCCCCccEEEcCCCc-ccccCCccccCCCCCCEEEccCC
Q 042089 375 QKN--ALS-GQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKHSELRVLLLRGNY-LQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 375 ~~n--~l~-~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
++| .++ +.+|..+..+++|++|++++|. +++..+..++.+++|+.|++++|. ++......+.++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 555 5678888899999999999999 788888899999999999999995 33333336788999999999988
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=221.89 Aligned_cols=251 Identities=20% Similarity=0.221 Sum_probs=169.6
Q ss_pred ccCCcEEeCCCCcCcccCC----ccccCCCCCcEEEcCCC---eeeeecCccc------ccCCCCCcEEeccCCcccc--
Q 042089 198 LQKLMLIDISKNNFEGNIP----YSIGEMKELFLLDLSRN---KFSGDLSATS------VNGCASLEYLDVSENNFYG-- 262 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~~~~~------~~~~~~L~~L~Ls~n~l~~-- 262 (557)
+++|+.|++++|.+++..+ ..+..+++|++|++++| ++.+.+|..+ +..+++|++|++++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5566666666666654322 23456666666666664 2333444332 2456677777777777765
Q ss_pred --ccCccccCcccccceeccccccccccccccc----CC---------CCCcEEEccCCccc-CccC---ccccCCCCCc
Q 042089 263 --HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL----NS---------HGLVVLDISNNLLS-GHIP---CWIGNFSYLD 323 (557)
Q Consensus 263 --~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~----~~---------~~L~~L~Ls~n~l~-~~~p---~~l~~~~~L~ 323 (557)
.++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 3555566677777777777777543333332 23 78888888888887 4444 4566778888
Q ss_pred EEEcCCCcCCC-----CcchhhccCCCCcEEEccCcccc----ccccccc-CCCCccEEEccCCccccc----chhhhhc
Q 042089 324 VLLMSKNHLEG-----NIPVQINNFRQLEILYLSENRLF----GSIASFL-NLSSIMHLYLQKNALSGQ----IPSTLLR 389 (557)
Q Consensus 324 ~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~i~~~~-~~~~L~~L~L~~n~l~~~----~p~~l~~ 389 (557)
+|++++|.++. ..+..+..+++|++|++++|.++ +.+|... .+++|++|+|++|++++. +|..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 88888888873 24447778888888888888885 4455544 788899999999988866 5667744
Q ss_pred --CCCCcEEeCCCCcccc----cCCccc-cCCCCccEEEcCCCcccccCC--ccc-cCCCCCCEEEccC
Q 042089 390 --STELLTLDLRDNKFFG----RIPHQI-NKHSELRVLLLRGNYLQGEIP--IAL-CQLQKLRILDLSH 448 (557)
Q Consensus 390 --~~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~g~ip--~~l-~~l~~L~~Ldls~ 448 (557)
+++|++|++++|++++ .+|.++ ..+++|+.|++++|++++..| ..+ ..+++++.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 8899999999999987 488877 668999999999999987764 332 2344444444433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-24 Score=218.16 Aligned_cols=205 Identities=19% Similarity=0.133 Sum_probs=127.7
Q ss_pred EEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHh---hhcc-CCcEEeCCCCcCcccCCccccCC-----CC
Q 042089 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMG---TVLQ-KLMLIDISKNNFEGNIPYSIGEM-----KE 224 (557)
Q Consensus 154 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 224 (557)
++.+++|.+++..+......++|++|++++|.+++..+..++ ..++ +|+.|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467888998887433334556699999999999866653322 3466 89999999999998777777765 89
Q ss_pred CcEEEcCCCeeeeecCccc---ccCC-CCCcEEeccCCccccccCcccc----C-cccccceecccccccccc----ccc
Q 042089 225 LFLLDLSRNKFSGDLSATS---VNGC-ASLEYLDVSENNFYGHIFPTYM----N-LTQLRGLYLKNNHFTGKI----KAG 291 (557)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~---~~~~-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~----~~~ 291 (557)
|++|++++|.+++..+..+ +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999875444322 2233 6788888888887665443332 2 246666666666666422 222
Q ss_pred ccCCC-CCcEEEccCCcccCccCcccc----CC-CCCcEEEcCCCcCCCC----cchhhcc-CCCCcEEEccCccccc
Q 042089 292 LLNSH-GLVVLDISNNLLSGHIPCWIG----NF-SYLDVLLMSKNHLEGN----IPVQINN-FRQLEILYLSENRLFG 358 (557)
Q Consensus 292 l~~~~-~L~~L~Ls~n~l~~~~p~~l~----~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~ 358 (557)
+...+ +|++|++++|.+++..+..++ .+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 33333 666666666666555443332 22 3555555555555542 2333333 2355555555555543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=193.85 Aligned_cols=201 Identities=24% Similarity=0.246 Sum_probs=113.8
Q ss_pred cCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc
Q 042089 220 GEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299 (557)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~ 299 (557)
.++++++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34444445555444444 3433321 3445555555555444444455555555555555555432221 4455566
Q ss_pred EEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCc
Q 042089 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNA 378 (557)
Q Consensus 300 ~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~ 378 (557)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666555 445555566666666666666665555556666666666666666665444433 56666666666666
Q ss_pred ccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 379 LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 379 l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
+++..+..+..+++|++|++++|+++ .+|.++..+++|+.++|++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66444445566667777777777775 56666666667777777777665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=186.47 Aligned_cols=181 Identities=22% Similarity=0.211 Sum_probs=143.6
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
..++++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 4444442 567778888888777777777778888888888888887777777788888888888
Q ss_pred Cccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 353 ENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 353 ~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+.+++.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 888876555544 7888888888888888666667788999999999999998777778899999999999999999877
Q ss_pred CccccCCCCCCEEEccCCcCcCCcC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+..+..+++|+.|++++|++++..+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 7789999999999999999998743
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=191.46 Aligned_cols=169 Identities=20% Similarity=0.309 Sum_probs=83.3
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 326 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~ 326 (557)
+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence 3444444444444332211 33444444444444444321 1 344455555555555555542 2 145555555555
Q ss_pred cCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 327 MSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 327 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
+++|.+++..+ +..+++|+.|++++|.+++.. .+..+++|++|++++|++++..+ +..+++|++|++++|++++.
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 55555554322 555555555555555555422 23355555555555555553322 55556666666666666543
Q ss_pred CCccccCCCCccEEEcCCCccc
Q 042089 407 IPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 407 ~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
.| +..+++|+.|++++|+++
T Consensus 211 ~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 211 SP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GTTCTTCCEEEEEEEEEE
T ss_pred cc--ccCCCCCCEEEccCCeee
Confidence 32 555566666666666655
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-22 Score=194.56 Aligned_cols=225 Identities=17% Similarity=0.174 Sum_probs=119.0
Q ss_pred CCcEEEccCCcCcCCCcHHH--hhcCCCCCEEEccCccccCcccCCc--ccCCCccEEECcCCcCcCCCc----hhHhhh
Q 042089 126 NLKFLDLSSNKLVGNFPTWL--MQNNTNLEVLRLSNNSFSGILQLPK--VKHDFLRHLDISNNNLIGTLP----QNMGTV 197 (557)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~--~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~~~~~ 197 (557)
.++.+.+.++.++...-..+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..++ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 45566666655542111111 0134556777777776666543443 556677777777777765444 1222 4
Q ss_pred ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee--c-CcccccCCCCCcEEeccCCccccc--cCc-cccCc
Q 042089 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD--L-SATSVNGCASLEYLDVSENNFYGH--IFP-TYMNL 271 (557)
Q Consensus 198 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~-~~~~~~~~~~L~~L~Ls~n~l~~~--~~~-~~~~l 271 (557)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +......+++|++|++++|.++.. .+. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 67777777777777766667777777777777777776542 1 122224556666666666665421 111 12344
Q ss_pred ccccceecccccccccccccccCC---CCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNS---HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 555555555555554444444443 35555555555555 3344332 4444555555544432 11 333444444
Q ss_pred EEccCccc
Q 042089 349 LYLSENRL 356 (557)
Q Consensus 349 L~L~~n~l 356 (557)
|++++|++
T Consensus 299 L~L~~N~l 306 (310)
T 4glp_A 299 LTLDGNPF 306 (310)
T ss_dssp EECSSTTT
T ss_pred EECcCCCC
Confidence 44444444
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=183.10 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred CCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCc-cccccCccccCcccccceeccc-ccccccccccccCCCCCcEE
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENN-FYGHIFPTYMNLTQLRGLYLKN-NHFTGKIKAGLLNSHGLVVL 301 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~~~~L~~L 301 (557)
+|++|++++|+++ .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3444444444443 2222223334444444444443 3322222333444444444443 44443333344444444455
Q ss_pred EccCCcccCccCccccCCCCCc---EEEcCCC-cCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCC
Q 042089 302 DISNNLLSGHIPCWIGNFSYLD---VLLMSKN-HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKN 377 (557)
Q Consensus 302 ~Ls~n~l~~~~p~~l~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n 377 (557)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .+|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~----------------------~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET----------------------LTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE----------------------EEEECCSC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce----------------------eEEEcCCC
Confidence 554444443 333 33444443 4444444 44433333344444444 04444444
Q ss_pred cccccchhhhhcCCCCcEEeCCCCc-ccccCCccccCC-CCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKH-SELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
+++ .+|......++|+.|++++|+ +++..+.++..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 444 233222222455555555553 544444455555 55666666666555 33332 4555666666554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.84 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=151.8
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCc-ccCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEE
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL-LSGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILY 350 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 350 (557)
++++|++++|++++..+..+..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777888888888886 6666666777888888888887 888866667788888888888
Q ss_pred ccCcccccccccccCCCCcc---EEEccCC-cccccchhhhhcCCCCc-EEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 351 LSENRLFGSIASFLNLSSIM---HLYLQKN-ALSGQIPSTLLRSTELL-TLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 351 L~~n~l~~~i~~~~~~~~L~---~L~L~~n-~l~~~~p~~l~~~~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
+++|.+++ +|.+..+++|+ +|++++| ++++..+..+.++++|+ +|++++|+++ .+|......++|+.|++++|
T Consensus 112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 88888876 66655777777 9999999 89877777899999999 9999999997 66665444489999999999
Q ss_pred c-ccccCCccccCC-CCCCEEEccCCcCcCCcCccccccccc
Q 042089 426 Y-LQGEIPIALCQL-QKLRILDLSHNKLNGSIPSCFANVLFW 465 (557)
Q Consensus 426 ~-l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~~~~~l~~~ 465 (557)
+ +++..+..+..+ ++|+.||+++|++++-.+..+.+++.+
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCcee
Confidence 5 997767789999 999999999999995433446555533
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=188.62 Aligned_cols=196 Identities=22% Similarity=0.287 Sum_probs=167.3
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45677778887777754 33 57789999999999999986544 88999999999999999874 368899999999
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
++++|.+++. +. +..+++|++|++++|.+++.. .+..+++|++|++++|++++. +. +..+++|++|++++|++++
T Consensus 113 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 9999999874 33 899999999999999998644 466899999999999999964 43 8999999999999999976
Q ss_pred cCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCc
Q 042089 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 406 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++ .|.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCE
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCe
Confidence 543 8889999999999999996653 8999999999999999986 444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=178.89 Aligned_cols=178 Identities=19% Similarity=0.202 Sum_probs=122.0
Q ss_pred CcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC
Q 042089 250 LEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329 (557)
Q Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~ 329 (557)
.++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555554 2333322 3566666666666655555666666677777777776666666666677777777777
Q ss_pred CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCC
Q 042089 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP 408 (557)
Q Consensus 330 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p 408 (557)
|++++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776666666777777777777777765555443 67777777777777776666677788888888888888877666
Q ss_pred ccccCCCCccEEEcCCCccccc
Q 042089 409 HQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 409 ~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
..+..+++|+.|+|++|++++.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 7778888888888888888765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=203.05 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=95.0
Q ss_pred CCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEc
Q 042089 224 ELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303 (557)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~L 303 (557)
+++.|++++|.+++ +|..++ ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777764 655442 56777777777665 344 334566666666666654 444 332 5666666
Q ss_pred cCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccc
Q 042089 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQI 383 (557)
Q Consensus 304 s~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~ 383 (557)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|++|+|++|+++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-ch
Confidence 6666655 444 34555555555555554 333 34455555555555544 333 22 44555555555554 33
Q ss_pred hhhhhcCCCC-------cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 384 PSTLLRSTEL-------LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 384 p~~l~~~~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
|. +.. +| +.|++++|+|+ .+|.++..+++|+.|+|++|++++.+|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 33 222 33 44444444443 344444444444444444444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=174.23 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=136.5
Q ss_pred ceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 276 ~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444445444 334333 3577788888887776666667777888888888888876666667778888888888888
Q ss_pred ccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCcc
Q 042089 356 LFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIA 434 (557)
Q Consensus 356 l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 434 (557)
+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 876555543 78888888888888887666678888999999999999987666678889999999999997764
Q ss_pred ccCCCCCCEEEccCCcCcCCcCccccccc
Q 042089 435 LCQLQKLRILDLSHNKLNGSIPSCFANVL 463 (557)
Q Consensus 435 l~~l~~L~~Ldls~N~l~g~ip~~~~~l~ 463 (557)
.++.|+.|+++.|+++|.+|..++++.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 456889999999999999998887664
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-20 Score=170.57 Aligned_cols=174 Identities=21% Similarity=0.138 Sum_probs=115.5
Q ss_pred ccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEc
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 351 (557)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555556665555444444556666666666666666555555666666777777777666555555666777777777
Q ss_pred cCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 352 SENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 352 ~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++.+ .++.|++|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7777765554433 67777777777777776556667778888888888887654 345788888888888888
Q ss_pred CCccccCCCCCCEEEccCCcCcCCcC
Q 042089 431 IPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 431 ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
+|..++.++. ++..|...|..+
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred eeccCccccC----CccccccCCCcc
Confidence 8887776665 445555444433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=181.86 Aligned_cols=241 Identities=16% Similarity=0.138 Sum_probs=135.1
Q ss_pred cEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcE-Eec
Q 042089 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEY-LDV 255 (557)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~L 255 (557)
++++.++++++ .+|..+ .++++.|++++|+++...+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666666 566544 2456666666666663333455666666666666666555555555555555443 333
Q ss_pred cCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCC-CcCCC
Q 042089 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK-NHLEG 334 (557)
Q Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~-n~l~~ 334 (557)
..|++....+. .|..+++|++|++++|.+++..+..+.....+..+++.+ +++..
T Consensus 88 ~~N~l~~l~~~------------------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPE------------------------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTT------------------------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCch------------------------hhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 34444444344 444444555555555554444444444444444555543 23332
Q ss_pred CcchhhccC-CCCcEEEccCcccccccccccCCCCccEEEccC-Ccccccch-hhhhcCCCCcEEeCCCCcccccCCccc
Q 042089 335 NIPVQINNF-RQLEILYLSENRLFGSIASFLNLSSIMHLYLQK-NALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQI 411 (557)
Q Consensus 335 ~~~~~l~~l-~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~-n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~l 411 (557)
..+..+..+ ..++.|++++|+++...+..+...+|+++++.+ |.++ .+| ..|..+++|++||+++|+|+. +|.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~- 220 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY- 220 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS-
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh-
Confidence 223334443 346677777777765444444666777777765 4454 454 456778888888888888864 4432
Q ss_pred cCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCc
Q 042089 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 412 ~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.+.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 221 -~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 -GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 23455555555554444666 47778888888886543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-20 Score=193.41 Aligned_cols=188 Identities=24% Similarity=0.346 Sum_probs=137.8
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
.+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 378888888888875 666553 67888888888887 666 236788888888888876 555 444 788888
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 88888876 555 46788888888888876 555 46778888888888876 555 54 78888888888877
Q ss_pred ccccccCCCCc-------cEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCC
Q 042089 359 SIASFLNLSSI-------MHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKH 414 (557)
Q Consensus 359 ~i~~~~~~~~L-------~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l 414 (557)
.+|.+.. +| +.|+|++|+++ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus 194 ~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4555222 56 88888888887 577777778888888888888888887777654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=180.91 Aligned_cols=240 Identities=18% Similarity=0.118 Sum_probs=161.2
Q ss_pred CEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCc-cccCCCCCcE-EEc
Q 042089 153 EVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPY-SIGEMKELFL-LDL 230 (557)
Q Consensus 153 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~L 230 (557)
++++.+++.++.. |..-.+++++|+|++|+++ .+|...+..+++|++|++++|.+.+.+|. +|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt~i---P~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEI---PSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSC---CTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCcc---CcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5788888888754 4434578999999999998 77776556799999999999999777764 6788988776 556
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc-cccccccccccCCC-CCcEEEccCCcc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN-HFTGKIKAGLLNSH-GLVVLDISNNLL 308 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~~~-~L~~L~Ls~n~l 308 (557)
..|++. .++...+..+++|++|++++|.+....+..+....++..+++.++ .++...+..+.... .++.|++++|.+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678887 666667788999999999999998766666666777778888664 45543344454443 577788888887
Q ss_pred cCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
+. +|.......+|+.+++++ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|...++.--..+| .+
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CT
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-Cc
Confidence 74 344333456677777765 444433334567777777777777776642222 13344444444333222344 24
Q ss_pred hcCCCCcEEeCCCC
Q 042089 388 LRSTELLTLDLRDN 401 (557)
Q Consensus 388 ~~~~~L~~L~L~~N 401 (557)
.++++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 55555555555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=189.72 Aligned_cols=173 Identities=24% Similarity=0.385 Sum_probs=117.0
Q ss_pred cCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcE
Q 042089 269 MNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEI 348 (557)
Q Consensus 269 ~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 348 (557)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++ + +.+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 345556666666665552 22 35556666666666666665444 5666666677776666664 2 25666777777
Q ss_pred EEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 349 LYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 349 L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|+|++|.+.+ ++.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 7777777664 45555677777777777777754 467777788888888888776555 777788888888888877
Q ss_pred ccCCccccCCCCCCEEEccCCcCcCC
Q 042089 429 GEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 429 g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
+. ..+..+++|+.|+|++|++++.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 53 3577788888888888888764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=170.43 Aligned_cols=171 Identities=24% Similarity=0.402 Sum_probs=114.9
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+++|+.|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 445555555555555422 2 24555666666666666665433 5666666666666666664 22 36667777777
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++|.+++ ++.+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 777777664 35555677777777777777754 467778888888888888876544 7778888888888888875
Q ss_pred cCCccccCCCCCCEEEccCCcCcC
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
+| .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 34 47788888888888888875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=161.31 Aligned_cols=155 Identities=25% Similarity=0.228 Sum_probs=121.9
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc-hhhccCCCCcEEEccCccccccccc-ccCCCCccEEEccC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQK 376 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~ 376 (557)
+.+++++|.++. +|..+. ..+++|++++|++++..+ ..+..+++|++|++++|.+++..+. +..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 454443 345677777777765543 3466777777777777777765553 33778888888888
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777888899999999999999998889999999999999999999998889999999999999999999997754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=182.02 Aligned_cols=191 Identities=17% Similarity=0.263 Sum_probs=134.9
Q ss_pred CCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceec
Q 042089 200 KLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 200 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
.+..+.+..+.+...++ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 45555666666664433 567788888888888876 4443 4578888888888888876444 777788888888
Q ss_pred ccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccc
Q 042089 280 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGS 359 (557)
Q Consensus 280 ~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 359 (557)
++|.+++ +| .+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8887774 23 567777788888888877753 3466777777777777777754 5567777777777777777765
Q ss_pred cccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc
Q 042089 360 IASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR 406 (557)
Q Consensus 360 i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~ 406 (557)
.| +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred hh-hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 55 55677777777777777753 3 466777777777777777654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=158.08 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 321 YLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 321 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
.++.|++++|++++..+..+..+++|++|++++|.+++..|..+ .+++|++|+|++|+++...+..+..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555555554444445555555555555555554434333 55566666666666664444456777888888888
Q ss_pred CCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 400 DNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 400 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
+|++++..|.++..+++|+.|+|++|++++..+..+..+++|+.|++++|++...
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8888777777888888888888888888877777788888888888888888753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=157.56 Aligned_cols=155 Identities=22% Similarity=0.210 Sum_probs=113.7
Q ss_pred CcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccC
Q 042089 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQK 376 (557)
Q Consensus 298 L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~ 376 (557)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+ .+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555554 3444332 566666666666666666666666777777777777654433433 677777777777
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777666666788889999999999986 788888889999999999999997666778899999999999999987754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=173.19 Aligned_cols=157 Identities=27% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEc
Q 042089 297 GLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYL 374 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L 374 (557)
.++.|++++|.+++..+..+. .+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+ .+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555555555554 55566666666666655555555666666666666666654444333 5666666666
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccccCCccc---cCCCCccEEEcCCCcccccCCccccCCCC--CCEEEccCC
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI---NKHSELRVLLLRGNYLQGEIPIALCQLQK--LRILDLSHN 449 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~g~ip~~l~~l~~--L~~Ldls~N 449 (557)
++|++++..|..+..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666665556666666666666666666654322233 44666666666666666444445555554 366677777
Q ss_pred cCcC
Q 042089 450 KLNG 453 (557)
Q Consensus 450 ~l~g 453 (557)
++..
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 6654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=155.51 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=94.5
Q ss_pred cEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccc
Q 042089 202 MLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281 (557)
Q Consensus 202 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (557)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 34555555554 3444332 23455666666655443444445566666666666666555555566666666666666
Q ss_pred ccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 282 n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665555566666677777777777776666666667777777777777766666666666677777776666654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=163.81 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=114.2
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (557)
.+.+..+.+++.. .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+++
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~-------------------- 82 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTD-------------------- 82 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC--------------------
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCC--------------------
Confidence 3344444444322 2345566666666666554 2322 2345555555555555543
Q ss_pred cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. +.
T Consensus 83 ----~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~ 151 (291)
T 1h6t_A 83 ----IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TV 151 (291)
T ss_dssp ----CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GG
T ss_pred ----Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hh
Confidence 222 44455555555555555541 2255566666666666666643 3466667777777777777653 55
Q ss_pred ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 363 ~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
+..+++|++|++++|++++..| +..+++|++|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 5577777888888887775544 7788888888888888865 34 47788888888888888874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-18 Score=154.41 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=114.6
Q ss_pred cCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccc-cCCCCccE
Q 042089 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASF-LNLSSIMH 371 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~-~~~~~L~~ 371 (557)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+.. ..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556777777777766 344 4666777777777777554 2346777888888888888887644443 37888888
Q ss_pred EEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcC
Q 042089 372 LYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 372 L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l 451 (557)
|++++|++++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 8888888888888888899999999999998334565 68889999999999999985 44 788899999999999998
Q ss_pred cC
Q 042089 452 NG 453 (557)
Q Consensus 452 ~g 453 (557)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=154.68 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=102.5
Q ss_pred cCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEec
Q 042089 6 LTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLL 85 (557)
Q Consensus 6 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~ 85 (557)
.+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.++ .+|...+.++++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 356788887776 5676555 78888888888888887888888888888888888886 5665667777777777777
Q ss_pred CccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccC
Q 042089 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSG 164 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 164 (557)
+|.+.+ ++...+..+.+|++|++++|.+..+|..+..+++|++|++++|+++ .+|...+..+++|+.|++++|.+.+
T Consensus 97 ~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCc-cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 776653 2333345556666666666666666666666666666666666665 3333333455555555555555443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=155.21 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=117.0
Q ss_pred cceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCc
Q 042089 275 RGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354 (557)
Q Consensus 275 ~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 354 (557)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444432 56777788777777766667777788888888888887777777888888888888888
Q ss_pred cccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 355 RLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 355 ~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
.++...+..+ .+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8875544443 68888888888888887778888888999999999999987777788888999999999998864
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-18 Score=161.58 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=128.3
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+.++..++++.+.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566666777666633 2 45566777777777777764 34 56777788888888888776544 7778888888
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++|++++ ++.... ++|++|++++|++++ ++ .+..+++|++|++++|++++. | .++.+++|+.|++++|++++
T Consensus 91 ~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 888888775 343334 788888888888885 33 588888899999999988754 3 67888889999999999886
Q ss_pred cCCccccCCCCCCEEEccCCcCcCC
Q 042089 430 EIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
. ..+..+++|+.|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 6 6688888999999999998866
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=151.55 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=65.5
Q ss_pred CcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEE
Q 042089 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEIL 349 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 349 (557)
.+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|
T Consensus 64 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 3344444444444332 12244555666666666666666556666666666666666666666556666666666666
Q ss_pred EccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcc
Q 042089 350 YLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKF 403 (557)
Q Consensus 350 ~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l 403 (557)
++++|...+.++.+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus 142 ~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 66666532333333344444444444444442 22 334444444444444443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=164.87 Aligned_cols=178 Identities=25% Similarity=0.234 Sum_probs=126.2
Q ss_pred ccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCcccc-CCCCCcEEEcCCCeeeeecCcccccCCCCCcEEe
Q 042089 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG-EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLD 254 (557)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (557)
-+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|+++ .++...+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 356777777776 5666552 4577788888888766666666 7788888888888877 44544556777888888
Q ss_pred ccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccc---cCCCCCcEEEcCCCc
Q 042089 255 VSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI---GNFSYLDVLLMSKNH 331 (557)
Q Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l---~~~~~L~~L~l~~n~ 331 (557)
|++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88887776666667777778888888887777667777777888888888887776444444 457778888888888
Q ss_pred CCCCcchhhccCCC--CcEEEccCccccc
Q 042089 332 LEGNIPVQINNFRQ--LEILYLSENRLFG 358 (557)
Q Consensus 332 l~~~~~~~l~~l~~--L~~L~L~~n~l~~ 358 (557)
+++..+..+..++. ++.|++++|++..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 77666666666665 3677777777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-19 Score=186.49 Aligned_cols=120 Identities=23% Similarity=0.222 Sum_probs=69.6
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+ .+++|++|+|++|++++ +| .+..+++|++|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4455555555553 333 555555555555555555 333322 55555556666666654 45 566666667777777
Q ss_pred CcccccC-CccccCCCCccEEEcCCCcccccCCcc---ccCCCCCCEEEc
Q 042089 401 NKFFGRI-PHQINKHSELRVLLLRGNYLQGEIPIA---LCQLQKLRILDL 446 (557)
Q Consensus 401 N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~~---l~~l~~L~~Ldl 446 (557)
|++++.. |..++.+++|+.|+|++|++++..|.. +..+++|++||+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7666655 666666777777777777776554422 234677777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-19 Score=187.43 Aligned_cols=108 Identities=26% Similarity=0.300 Sum_probs=88.2
Q ss_pred CCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
.|+.|++++|.+++ +|.+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 47888888888876 566557888888888888888 778888888888888888888875 66 788888888888888
Q ss_pred CcccccC-CccccCCCCCCEEEccCCcCcCCcC
Q 042089 425 NYLQGEI-PIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 425 N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++.+ |..+..+++|+.|++++|++++.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8888776 8888888888888888888887655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-17 Score=157.21 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=118.7
Q ss_pred CCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEc
Q 042089 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 327 (557)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l 327 (557)
.++..++++.+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555555555554322 3455666666666666665 233 45666777777777777765444 667777777777
Q ss_pred CCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccC
Q 042089 328 SKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRI 407 (557)
Q Consensus 328 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~ 407 (557)
++|++++ +|.. .. ++|+.|++++|.+++ ++.+..+++|++|++++|++++. + .+..+++|++|++++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 7777765 3322 22 778888888888775 45556788888888888888854 4 688889999999999999766
Q ss_pred CccccCCCCccEEEcCCCccccc
Q 042089 408 PHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6788889999999999998855
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=145.16 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=105.0
Q ss_pred cEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc--ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 323 DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~--~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
+.+++++|.++ .+|..+.. +++.|++++|.+++..+. +..+++|++|+|++|++++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555553 44443332 677777777777665543 34778888888888888888888899999999999999
Q ss_pred CcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..|.++..+++|++|+|++|++++.+|..+..+++|+.|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888889999999999999999999999999999999999999999998765
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=164.39 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=143.6
Q ss_pred CCCCCEEECCCCcCCccCchhccC-CCCCCEEeCcCcccC--cccChhhhcCCCCCcEEEecCccCcccccCCCCCC---
Q 042089 27 LTGLKVFDISSNQLSGNLPSVIAN-LTSLEYLVLSDNNFQ--GEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIP--- 100 (557)
Q Consensus 27 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--- 100 (557)
+.+++.|.++++ +.+.-...+.. +++|++|||++|++. ...+ +.++.++.+.+..+ .++..++..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc----cccccccccccccc----ccCHHHhccccc
Confidence 567888888764 22222233434 778888888888876 1111 11222334444433 345555666
Q ss_pred -----CCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc----cCcccCCc
Q 042089 101 -----TFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF----SGILQLPK 170 (557)
Q Consensus 101 -----~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l----~~~~~~~~ 170 (557)
|.+|+.+++.+ .+..|++ .+..|++|+.+++++|.+. .++...|..+.++..+.+..+.. .......+
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 77778887777 6766654 4667777888888777776 55666666666666666554321 12222334
Q ss_pred ccCCCcc-EEECcCCcCcCCCchhHhhh---ccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccC
Q 042089 171 VKHDFLR-HLDISNNNLIGTLPQNMGTV---LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNG 246 (557)
Q Consensus 171 ~~~~~L~-~L~L~~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 246 (557)
..+..|+ .+.+... +.++..++.. ..++..+.+.++-...........+++|+.+++++|.++ .++...|.+
T Consensus 173 ~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQ 248 (329)
T ss_dssp EESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTT
T ss_pred ccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhC
Confidence 4555555 4444332 2334333321 233444444332111000000112555666666655554 555555555
Q ss_pred CCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCc-EEEccCCcccCccCccccCCCCCcEE
Q 042089 247 CASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV-VLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
|++|+.+++.+| +... .+..|..|.+|+ .+++.+ .++..-+.+|.+|++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I------------------------~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTI------------------------GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECCTT-CCEE------------------------CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCCCEEECCcc-ccee------------------------hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 555555555554 3322 233344444444 444444 3333334445555555555
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEE
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILY 350 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~ 350 (557)
+++.|+++...+.+|.+|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-17 Score=182.60 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEE
Q 042089 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325 (557)
Q Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L 325 (557)
.+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 3444444444444443 33333334444444444444444 34444444444444444444444 334444444444444
Q ss_pred EcCCCcCCCCcchhhccCCCCcEEEccCcccccccc
Q 042089 326 LMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 326 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
+|++|.++ .+|..|+.+++|++|+|++|.+++.+|
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 44444443 334444444444444444444444433
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=140.62 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=94.6
Q ss_pred CCCcEEEcCCCcCC-CCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLE-GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +.+..+++|++|++++|++++.+|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34555555555554 44555555566666666666666544 44446777777777777777667777777888888888
Q ss_pred CCCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEEccCCcCcCCcCc
Q 042089 399 RDNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILDLSHNKLNGSIPS 457 (557)
Q Consensus 399 ~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ldls~N~l~g~ip~ 457 (557)
++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++|.+. .+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 88888653 22677888888888888888885554 47788888888888888876 4443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-17 Score=182.12 Aligned_cols=183 Identities=26% Similarity=0.272 Sum_probs=124.0
Q ss_pred ccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhcc
Q 042089 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 342 (557)
Q Consensus 263 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 342 (557)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34667788999999999999998 77777889999999999999999 88999999999999999999999 78999999
Q ss_pred CCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCC-CcEEeCCCCcccccCCccccCCCCccEE
Q 042089 343 FRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTE-LLTLDLRDNKFFGRIPHQINKHSELRVL 420 (557)
Q Consensus 343 l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L 420 (557)
+++|++|+|++|.++ .+|..+ .+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 999999999999997 556544 8999999999999999999988866432 235789999999988864 4556
Q ss_pred EcCCC--------cccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 421 LLRGN--------YLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 421 ~L~~N--------~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
+++.| .+.+..+..+..+..++...++.|-+.+..
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp -------------------------------------CCCGGG
T ss_pred EeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 66666 344444555667778888889999886433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=137.70 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCcEEEcCCCcCC-CCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCC
Q 042089 321 YLDVLLMSKNHLE-GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLR 399 (557)
Q Consensus 321 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~ 399 (557)
+++.|++++|.++ +.+|..+..+++|++|++++|.+++. +.+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3444444444444 34444444555555555555555443 333356666666666666666567666677777777777
Q ss_pred CCccccc-CCccccCCCCccEEEcCCCcccccCC---ccccCCCCCCEEEccC
Q 042089 400 DNKFFGR-IPHQINKHSELRVLLLRGNYLQGEIP---IALCQLQKLRILDLSH 448 (557)
Q Consensus 400 ~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~l~~l~~L~~Ldls~ 448 (557)
+|++++. .|..++.+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777653 34667777777777777777776554 4677777888877753
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=139.48 Aligned_cols=133 Identities=23% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCcCEEeCCCCCCc-ccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEE
Q 042089 4 KNLTELDLRENNLE-GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVL 82 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L 82 (557)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+| ..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEE
Confidence 55667777777666 56666666666777777777666644 566666667777777776665455 234445555555
Q ss_pred EecCccCcccccCCCCCCCCcccEEECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcCCCc--HHHhhcCCCCCEEEcc
Q 042089 83 RLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVGNFP--TWLMQNNTNLEVLRLS 158 (557)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~~~p--~~~~~~l~~L~~L~L~ 158 (557)
++++| .+..+| ..+..+++|++|++++|.+++..+ ...+..+++|++|+++
T Consensus 101 ~Ls~N-------------------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGN-------------------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECBSS-------------------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred eccCC-------------------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 55554 444443 455666666666666666663333 1233466777777776
Q ss_pred CccccC
Q 042089 159 NNSFSG 164 (557)
Q Consensus 159 ~n~l~~ 164 (557)
+|.+..
T Consensus 156 ~n~~~~ 161 (168)
T 2ell_A 156 DREDQE 161 (168)
T ss_dssp ETTSCB
T ss_pred CCChhh
Confidence 666543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-16 Score=154.95 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=157.4
Q ss_pred CCCcCEEeCCCCCCc--ccCCccCCCCCCCCEEECCCCcCCccCchhccC--------CCCCCEEeCcCcccCcccChhh
Q 042089 3 LKNLTELDLRENNLE--GQLPWRLSDLTGLKVFDISSNQLSGNLPSVIAN--------LTSLEYLVLSDNNFQGEFPLSL 72 (557)
Q Consensus 3 l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~g~~p~~~ 72 (557)
+++|++|||++|.+. ...+..+. .++.+.+..|.+. +..|.+ |++|++|+|++ .++ .|+...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---ccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 678999999999987 22222222 2444545444221 234555 78888888877 666 677777
Q ss_pred hcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCC----CCcC-hhhhCCCCCc-EEEccCCcCcCCCcHHHh
Q 042089 73 LTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSL----KVIP-SFLLHQYNLK-FLDLSSNKLVGNFPTWLM 146 (557)
Q Consensus 73 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l----~~ip-~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~ 146 (557)
|.+|++|+.+++.+|... .++..++..+.++.++....... ..+. ..+..|.+|+ .+.+... +.++..++
T Consensus 120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~ 195 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIM 195 (329)
T ss_dssp TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHH
T ss_pred hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHh
Confidence 888888888888777665 44555666666777666655211 1121 2244556666 4444432 24444444
Q ss_pred hc---CCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCC
Q 042089 147 QN---NTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMK 223 (557)
Q Consensus 147 ~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 223 (557)
.. ..+++.+.+.++-.......-...+++|+.+++++|+++ .+|...+..|++|+.+++.+| +...-+.+|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 33 344555555443211100000013567777777777766 666666666777777777776 5545556677777
Q ss_pred CCc-EEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceec
Q 042089 224 ELF-LLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYL 279 (557)
Q Consensus 224 ~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (557)
+|+ .+++.+ .++ .++...|.+|++|+.++++.|.+....+..|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777 777776 454 666667777778888887777776666667777777777653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=137.40 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=75.5
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch-hhccCCCCcEEEccCccccccccccc-CCCCccEEEccC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQK 376 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~ 376 (557)
+++++++|.++ .+|..+.. .+++|++++|++++..+. .+..+++|++|++++|.+++..|..+ .+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34455554442 33433322 455555555555544332 24555555555555555555444333 555666666666
Q ss_pred CcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCC
Q 042089 377 NALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 377 n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 432 (557)
|++++..|..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66665555566666777777777777776667777777777777777777765544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=133.35 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCCcEEEccCCccc-CccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEE
Q 042089 296 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLY 373 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~ 373 (557)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|... .+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555555555555555544 445555666666666666655455444 366666666
Q ss_pred ccCCccccc-chhhhhcCCCCcEEeCCCCcccccCC---ccccCCCCccEEEcC
Q 042089 374 LQKNALSGQ-IPSTLLRSTELLTLDLRDNKFFGRIP---HQINKHSELRVLLLR 423 (557)
Q Consensus 374 L~~n~l~~~-~p~~l~~~~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~ 423 (557)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 34566677777777777777765544 456667777777665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-14 Score=143.69 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=108.4
Q ss_pred hhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccC
Q 042089 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQK 200 (557)
Q Consensus 121 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 200 (557)
+..|.+|+.+++..|+++ .++...|. +++|+.+.+..+ ++......+..+++|+.+++..+ ++ .++...+.. .+
T Consensus 176 F~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC
T ss_pred hhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC
Confidence 444444555555444444 34444442 345555555422 33332233444455555555443 22 333333332 45
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeee----eecCcccccCCCCCcEEeccCCccccccCccccCcccccc
Q 042089 201 LMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS----GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRG 276 (557)
Q Consensus 201 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (557)
|+.+.+ .+.++..-..+|.+|++|+.+++.++.+. ..++...|.+|++|+.+++.. .+...-...+..|++|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 666655 23344333455666666666666655442 135566666777777777763 344444455666777777
Q ss_pred eecccccccccccccccCCCCCcEEEccCCcccCccCccccCCC-CCcEEEcCCCc
Q 042089 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKNH 331 (557)
Q Consensus 277 L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~l~~n~ 331 (557)
+.+..+ ++......|..+ +|+.+++.+|......+..|.+++ .++.+.+..+.
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 777544 444445566677 777777777766655556666663 56777766544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=131.34 Aligned_cols=131 Identities=22% Similarity=0.222 Sum_probs=96.6
Q ss_pred cEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCC
Q 042089 323 DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401 (557)
Q Consensus 323 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N 401 (557)
+.+++++++++ .+|..+ .++|+.|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555544 233222 2456666666666665444433 5677777777777777656666788899999999999
Q ss_pred cccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 402 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9987777778889999999999999996666667889999999999999998776
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=131.59 Aligned_cols=110 Identities=26% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCcEEEccCccccccccc-ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEc
Q 042089 344 RQLEILYLSENRLFGSIAS-FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422 (557)
Q Consensus 344 ~~L~~L~L~~n~l~~~i~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 422 (557)
++++.|++++|.++ .+|. +..+++|++|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34555555555554 2332 225666666666666776666667788888888888888888777778888888888888
Q ss_pred CCCcccccCCccccCCCCCCEEEccCCcCcCC
Q 042089 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 423 ~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
++|++++..+..+..+++|+.|++++|++.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88888866566788888999999999988754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-14 Score=141.66 Aligned_cols=330 Identities=12% Similarity=0.052 Sum_probs=228.4
Q ss_pred CCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCC
Q 042089 20 LPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI 99 (557)
Q Consensus 20 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 99 (557)
-..+|.+|++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++ .|+...+.++++|+.+.+..+- ..+...++.
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l--~~i~~~aF~ 137 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML--KSIGVEAFK 137 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC--CEECTTTTT
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce--eeecceeee
Confidence 4467899999999999854 66555678999999999999865 55 6777788899999887665432 122333444
Q ss_pred CCCcccEEECCCCCCCCc-ChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccE
Q 042089 100 PTFQLKVLQLPNCSLKVI-PSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH 178 (557)
Q Consensus 100 ~~~~L~~L~L~~n~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 178 (557)
.+..++...... ...+ ...+..|++|+.+.+.++. . .++...|.+|++|+.+.+..+ ++......+..+..|+.
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 444333332222 2222 2457788999999997653 3 566677778999999988766 44343355667888888
Q ss_pred EECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCC
Q 042089 179 LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSEN 258 (557)
Q Consensus 179 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n 258 (557)
+.+..+... +....+ ....|+.+.+... ++..-...+..+..++.+.+..+.. .+....+..+..++.+.....
T Consensus 213 i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSS
T ss_pred eecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCce
Confidence 887765432 222232 3578888887653 3323345678889999999887654 456667778889998888766
Q ss_pred ccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcch
Q 042089 259 NFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 338 (557)
Q Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~ 338 (557)
.+. ...+..+.+|+.+.+.++ ++......|..|.+|+.+++..+ ++..-..+|.+|++|+.+.+..+ ++.....
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 442 235667888999888765 55445667888999999999754 66556778899999999999876 6656677
Q ss_pred hhccCCCCcEEEccCcccccccccccCCCCccEE
Q 042089 339 QINNFRQLEILYLSENRLFGSIASFLNLSSIMHL 372 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L 372 (557)
+|.+|.+|+.+++..+--.. --.+.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKRLEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGGGGGG-GGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCCCEEh-hheecCCCCCcEE
Confidence 89999999999998653221 1234477777764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=137.78 Aligned_cols=332 Identities=12% Similarity=0.059 Sum_probs=237.2
Q ss_pred CCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh
Q 042089 40 LSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS 119 (557)
Q Consensus 40 l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~ 119 (557)
++.+-..+|.+|++|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ...+...++..+..|+.+.+..+ +..+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 44445578999999999999865 66 788888999999999999754 23455567788888988877654 433433
Q ss_pred -hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhc
Q 042089 120 -FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVL 198 (557)
Q Consensus 120 -~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 198 (557)
.+..+..++........ .+....|.+|++|+.+.+.++. .......+..+.+|+.+.+..+ ++ .++...+..+
T Consensus 134 ~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred eeeecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 34444433333332222 3445557799999999998654 3333355678889999999876 33 5666666678
Q ss_pred cCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCccccccee
Q 042089 199 QKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLY 278 (557)
Q Consensus 199 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (557)
..|+.+.+..+... +........+|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+.
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceec
Confidence 89998888765432 33344556789999887543 2 566667788999999999876432 3345677788888887
Q ss_pred cccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 279 L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
.....+. ...+..+.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++
T Consensus 283 ~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~- 355 (394)
T 4fs7_A 283 YGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR- 355 (394)
T ss_dssp ECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-
T ss_pred cCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-
Confidence 7765432 346778999999999765 55555678999999999999754 66556778999999999999876 43
Q ss_pred ccc--cccCCCCccEEEccCCcccccchhhhhcCCCCcEE
Q 042089 359 SIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTL 396 (557)
Q Consensus 359 ~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 396 (557)
.++ .+.+|.+|+.+++..+ ++ .+...|.+|++|+.+
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 333 3448999999999765 33 345678899998875
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=128.84 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEe
Q 042089 318 NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397 (557)
Q Consensus 318 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 397 (557)
++.+|+.|++++|+++. +|......++|++|++++|.+++. +.+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 44455555555555552 233222223677777777776653 4455677788888888888755445558888899999
Q ss_pred CCCCcccccCCc--cccCCCCccEEEcCCCcccccCCcc----ccCCCCCCEEEccCCcCc
Q 042089 398 LRDNKFFGRIPH--QINKHSELRVLLLRGNYLQGEIPIA----LCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 398 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~ip~~----l~~l~~L~~Ldls~N~l~ 452 (557)
+++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999884 5665 7888889999999999988 55654 788999999999998875
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=138.37 Aligned_cols=265 Identities=12% Similarity=0.137 Sum_probs=199.1
Q ss_pred CCcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEE
Q 042089 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLR 83 (557)
Q Consensus 4 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~ 83 (557)
..++.+.+.. .++..-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .++ .|+...|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 4566666665 3443445677775 7999999877 665656678775 799999986 565 67777899999999999
Q ss_pred ecCccCcccccCCCCCCCCcccEEECCCCCCCCcCh-hhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccc
Q 042089 84 LLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPS-FLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162 (557)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 162 (557)
+..+... .++...+. +.+|+.+.+..+ +..|+. .+..|++|+.+++..+ ++ .++...|.+ .+|+.+.+. +.+
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 9887665 34444444 689999999854 766654 5778889999999875 44 667777755 789999994 445
Q ss_pred cCcccCCcccCCCccEEECcCCcCc----CCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeee
Q 042089 163 SGILQLPKVKHDFLRHLDISNNNLI----GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238 (557)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 238 (557)
+......+..+++|+.+++.++.+. ..++...+..|++|+.+++.. .++..-..+|.+|++|+.+.+..+ ++ .
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-Q 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-E
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-E
Confidence 5555567778999999999887654 236677777899999999984 576555678899999999999765 54 7
Q ss_pred cCcccccCCCCCcEEeccCCccccccCccccCcc-cccceeccccccc
Q 042089 239 LSATSVNGCASLEYLDVSENNFYGHIFPTYMNLT-QLRGLYLKNNHFT 285 (557)
Q Consensus 239 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~ 285 (557)
++...|.+| +|+.+++.+|.........+..++ .++.+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 778888899 999999999987665556666664 7888888876543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-14 Score=125.83 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=67.0
Q ss_pred CCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeC
Q 042089 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDL 398 (557)
Q Consensus 320 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 398 (557)
++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554444444555555555555555554333332 5566666666666666555555666777777777
Q ss_pred CCCcccccCCccccCCCCccEEEcCCCcccccCC
Q 042089 399 RDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIP 432 (557)
Q Consensus 399 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 432 (557)
++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777765444445667777777777777765544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-17 Score=147.54 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=78.7
Q ss_pred cccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 315 WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 315 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|... .+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555554 34 5555566666666666655 334333 44566666666666664 34 46666777
Q ss_pred cEEeCCCCcccccCC-ccccCCCCccEEEcCCCcccccCCcc----------ccCCCCCCEEEccCCcCc
Q 042089 394 LTLDLRDNKFFGRIP-HQINKHSELRVLLLRGNYLQGEIPIA----------LCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~----------l~~l~~L~~Ldls~N~l~ 452 (557)
++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777754222 35666777777777777777665542 67778888776 55554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-16 Score=145.41 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=94.8
Q ss_pred ccccceecccccccccccc------cccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCC
Q 042089 272 TQLRGLYLKNNHFTGKIKA------GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~------~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 345 (557)
..++.++++.+.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 55666666666666666665 44 5666666667777666666 45656666667
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCcc----------ccCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQ----------INKH 414 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~----------l~~l 414 (557)
|++|++++|.+++ +|.+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 7777777777665 4444466777777777777764322 46667777777777777776665542 5667
Q ss_pred CCccEEEcCCCccc
Q 042089 415 SELRVLLLRGNYLQ 428 (557)
Q Consensus 415 ~~L~~L~L~~N~l~ 428 (557)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 7777776 55554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=126.10 Aligned_cols=127 Identities=25% Similarity=0.278 Sum_probs=82.7
Q ss_pred cEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCC
Q 042089 299 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKN 377 (557)
Q Consensus 299 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n 377 (557)
+.+++++|.++ .+|..+. +.+++|++++|.++ .+|..+..+++|++|++++|.+++..+..+ .+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 3343332 35666666666665 455566666666666666666665444433 6667777777777
Q ss_pred cccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccc
Q 042089 378 ALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429 (557)
Q Consensus 378 ~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 429 (557)
++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777888888888888875555567777888888888887764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=127.40 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCc
Q 042089 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103 (557)
Q Consensus 24 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 103 (557)
+.++.+|++|++++|+++ .+|......++|++|++++|.+++. + .+..+++|++|++++|.+.+ ++...+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccc-cCcchhhcCCC
Confidence 455666666666666666 3343222233666666666666642 2 35666666666666666553 23222355667
Q ss_pred ccEEECCCCCCCCcCh--hhhCCCCCcEEEccCCcCcCCCcHH---HhhcCCCCCEEEccCcccc
Q 042089 104 LKVLQLPNCSLKVIPS--FLLHQYNLKFLDLSSNKLVGNFPTW---LMQNNTNLEVLRLSNNSFS 163 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~--~l~~~~~L~~L~Ls~n~l~~~~p~~---~~~~l~~L~~L~L~~n~l~ 163 (557)
|++|++++|.++.+|. .+..+++|++|++++|.++ .+|.. ++..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7778888888877776 7788888899999888887 55654 3458888999988888754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=118.26 Aligned_cols=110 Identities=23% Similarity=0.196 Sum_probs=94.3
Q ss_pred CCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCC
Q 042089 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 424 (557)
..+.+++++|.++. +|... .+.+++|+|++|++++..|..+.++++|++|++++|++++..|..+..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35678888888765 44333 37889999999999988888999999999999999999977777789999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 425 N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
|++++..+..+..+++|+.|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99997777789999999999999999997654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=114.90 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=90.8
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
-+.+++++|.+. .+|... .++|++|+|++|++++..|..+.++++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 367788888775 445433 278899999999999888889999999999999999998766667789999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCc
Q 042089 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSI 455 (557)
Q Consensus 426 ~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i 455 (557)
++++..+..+..+++|+.|++++|++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999766666999999999999999998653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-13 Score=139.71 Aligned_cols=160 Identities=22% Similarity=0.162 Sum_probs=76.6
Q ss_pred ccccceecccccccccccccc----c-CCCCCcEEEccCCcccCccCcccc-CCCCCcEEEcCCCcCCCCcchhhc----
Q 042089 272 TQLRGLYLKNNHFTGKIKAGL----L-NSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVLLMSKNHLEGNIPVQIN---- 341 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l----~-~~~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~l~~n~l~~~~~~~l~---- 341 (557)
+.|+.|++++|.++......+ . ..++|++|+|++|.++......+. .+++|+.|++++|.+++.....++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654322222 1 124666666666665543222221 234556666666665543333331
Q ss_pred -cCCCCcEEEccCcccccc----cccc-cCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc----C
Q 042089 342 -NFRQLEILYLSENRLFGS----IASF-LNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR----I 407 (557)
Q Consensus 342 -~l~~L~~L~L~~n~l~~~----i~~~-~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~----~ 407 (557)
..++|+.|+|++|.++.. ++.. ..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666665555431 1111 1345555555555555432 234444455555555555555432 2
Q ss_pred CccccCCCCccEEEcCCCcccccC
Q 042089 408 PHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+..+..+++|++|+|++|.+++..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHH
Confidence 222333455555555555555433
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=110.72 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=68.8
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
+.++++++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...+.+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~--------- 81 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT--------- 81 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT---------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcc---------
Confidence 56777777774 5666554 67777777777777766777777777777777777776 34544444444
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCCCcChh-hhCCCCCcEEEccCCcCcCC
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF-LLHQYNLKFLDLSSNKLVGN 140 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~ 140 (557)
+|++|++++|.+..+|.. +..+++|++|++++|.+...
T Consensus 82 ----------------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 ----------------QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ----------------TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ----------------hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 455555555555455543 66677777777777777643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=119.11 Aligned_cols=328 Identities=12% Similarity=0.129 Sum_probs=158.0
Q ss_pred cCCCCC-CCCEEECCCCcCCccCchhccCCCCCCEEeCcCcc---cCcccChhhhcCCCCCcEEEecCccCcccccCCCC
Q 042089 23 RLSDLT-GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN---FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENW 98 (557)
Q Consensus 23 ~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 98 (557)
+|.+++ .|+.+.+..+ ++.+-..+|.+|++|+.+.+..|. ++ .|+...|.++.+|+.+.+..+- ..+...++
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~~--~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDSV--TEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTTC--SEECTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCcc--ceehhhhh
Confidence 455553 4666666543 443444566666666666665543 33 4444555555555554443221 12233344
Q ss_pred CCCCcccEEECCCCCCCCcC-hhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCcc
Q 042089 99 IPTFQLKVLQLPNCSLKVIP-SFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLR 177 (557)
Q Consensus 99 ~~~~~L~~L~L~~n~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 177 (557)
..+.+|+.+.+..+ +..|+ ..+..|.+|+.+.+..+ ++ .+....| ...+|+.+.+..+... .....+..+..++
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCcccc-cccchhhhccccc
Confidence 44555555555432 22222 23344455555555433 22 2333333 2334555444332211 1112233333444
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 257 (557)
.......... .+...+........ .....+.....+..+.+... +. .+....|..|..|+.+.+..
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 209 TITSDSESYP-AIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp EEEECCSSSC-BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCT
T ss_pred eecccccccc-cccceeeccccccc-----------ccccccccccccceEEcCCc-ce-EcccceeeecccccEEeccc
Confidence 4333322211 01100000000000 00001112233344444322 22 44455566777777777765
Q ss_pred CccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcc
Q 042089 258 NNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP 337 (557)
Q Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~ 337 (557)
+.. ......+.++++|+.+.+.. .++......|..|.+|+.+++..+ ++..-..+|.+|++|+.+.+..+ ++..-.
T Consensus 275 ~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 432 12234556777777777753 344344556777888888888754 55555667888888888888654 555566
Q ss_pred hhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcc
Q 042089 338 VQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNAL 379 (557)
Q Consensus 338 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l 379 (557)
.+|.+|.+|+.+++.++... +..+..+..|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 78888999999988887543 23344677788877766654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=118.64 Aligned_cols=323 Identities=11% Similarity=0.100 Sum_probs=187.4
Q ss_pred CcCEEeCCCCCCcccCCccCCCCCCCCEEECCCCc---CCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcE
Q 042089 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQ---LSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEV 81 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~ 81 (557)
.|+.+.+..+ ++..-..+|.+|++|+.+.++.|. ++..-..+|.+|.+|+.+.+..+ ++ .++...+.++.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhccccc
Confidence 4888888764 554556789999999999998764 55455678999999999998765 44 677778999999999
Q ss_pred EEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCcc
Q 042089 82 LRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNS 161 (557)
Q Consensus 82 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 161 (557)
+.+...- ..+....+..+..|+.+.+..+ +..|.........|+.+.+..+.. .+....+.++..++........
T Consensus 142 i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 142 VTIPEGV--TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCSS
T ss_pred cccccee--eeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhccccceecccccc
Confidence 9996543 3455567788999999999765 666666666677899999876532 3334445688999988876655
Q ss_pred ccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCc
Q 042089 162 FSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 241 (557)
Q Consensus 162 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 241 (557)
........+........-.... .....+..+.+.. .++..-..+|.+++.|+.+.+..+.. .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~ 281 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRY------------PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGT 281 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEEC------------CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECT
T ss_pred cccccceeeccccccccccccc------------ccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecC
Confidence 4332111111111000000000 0011222222221 12212233455556666666554432 3444
Q ss_pred ccccCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCC
Q 042089 242 TSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 321 (557)
Q Consensus 242 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~ 321 (557)
..+.+|..|+.+.+.. .+.......+.++++|+.+.+.++ ++......|..|.+|+.+.+..+ ++..-..+|.+|++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 4555566666666542 232222334555666666666543 33333456666777777777543 44444556777777
Q ss_pred CcEEEcCCCcCCCCcchhhccCCCCcEEEccCccc
Q 042089 322 LDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356 (557)
Q Consensus 322 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (557)
|+.+++.++... ..++..+..|+.+.+..+.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777765432 23455667777776665543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-13 Score=139.90 Aligned_cols=158 Identities=19% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCCcEEEccCCcccCccCccccC-----CCCCcEEEcCCCcCCCCcchhhc-cCCCCcEEEccCcccccccccc----c-
Q 042089 296 HGLVVLDISNNLLSGHIPCWIGN-----FSYLDVLLMSKNHLEGNIPVQIN-NFRQLEILYLSENRLFGSIASF----L- 364 (557)
Q Consensus 296 ~~L~~L~Ls~n~l~~~~p~~l~~-----~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~i~~~----~- 364 (557)
+.|+.|++++|.++......+.. .+.|++|++++|.+++.....+. .+++|+.|+|++|.++...... .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554322222211 14555555555555433222221 2344555555555554321111 0
Q ss_pred -CCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccC----CccccCCCCccEEEcCCCccccc----C
Q 042089 365 -NLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRI----PHQINKHSELRVLLLRGNYLQGE----I 431 (557)
Q Consensus 365 -~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~g~----i 431 (557)
..+.|++|+|++|.+++. ++..+..+++|++|+|++|++++.. +..+...++|+.|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234555555555555431 3333344555555555555554321 33334444555555555555432 2
Q ss_pred CccccCCCCCCEEEccCCcCcC
Q 042089 432 PIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g 453 (557)
+..+..+++|+.|||++|++++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2233344555555555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=109.41 Aligned_cols=86 Identities=23% Similarity=0.222 Sum_probs=40.2
Q ss_pred ccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEc
Q 042089 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351 (557)
Q Consensus 272 ~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 351 (557)
+++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444555444444444444444444444444444444443434444444555554
Q ss_pred cCcccc
Q 042089 352 SENRLF 357 (557)
Q Consensus 352 ~~n~l~ 357 (557)
++|++.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=114.66 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=63.9
Q ss_pred EEEcCCC-cCCCCcchhhccCCCCcEEEccC-ccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCC
Q 042089 324 VLLMSKN-HLEGNIPVQINNFRQLEILYLSE-NRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400 (557)
Q Consensus 324 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 400 (557)
.++.+++ +++ .+|. +..+++|+.|+|++ |.+.+..+..+ .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 666 3566 66667777777764 66665554433 666667777777766666666666666666666666
Q ss_pred CcccccCCccccCCCCccEEEcCCCccc
Q 042089 401 NKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 401 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|+|++..+..+..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644444444444 666666666665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-10 Score=110.65 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=89.3
Q ss_pred cEEEccCC-cccCccCccccCCCCCcEEEcCC-CcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEcc
Q 042089 299 VVLDISNN-LLSGHIPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQ 375 (557)
Q Consensus 299 ~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~ 375 (557)
..++.+++ .+++ +|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..+ .+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 7875 788 99999999999996 99998888899999999999999999999887665 89999999999
Q ss_pred CCcccccchhhhhcCCCCcEEeCCCCcccc
Q 042089 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFG 405 (557)
Q Consensus 376 ~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~ 405 (557)
+|+|++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999965555555555 9999999999864
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-08 Score=100.83 Aligned_cols=302 Identities=11% Similarity=0.100 Sum_probs=146.2
Q ss_pred CCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCc
Q 042089 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103 (557)
Q Consensus 24 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 103 (557)
+....+|+.+.+... ++.+-..+|.+|.+|+.++|..+ ++ .|+..+|.++ +|+.+.+..+- ..+...++.. .+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~l--~~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMERV--KKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTTC--CEECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCcee--eEeccceecc-CC
Confidence 444456666666543 44344456677777777777644 44 5555556655 45555543321 1222223322 25
Q ss_pred ccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcC
Q 042089 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 183 (557)
|+.+.+..+ +..+........+++.+.+..+ ++ .+....+..+..++...+..+........... .
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~---------- 180 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y---------- 180 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E----------
T ss_pred cccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-c----------
Confidence 555555433 2223322222234444444332 11 22222233455555554443321110000000 0
Q ss_pred CcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccc
Q 042089 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263 (557)
Q Consensus 184 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 263 (557)
+. .......+ ..+..+..+.+.... .......+..+..|+.+.+..+- . .+....+..+..|+.+.+..+ ++..
T Consensus 181 ~~-~~~~~~~~-~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I 254 (379)
T 4h09_A 181 NK-NKTILESY-PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSI 254 (379)
T ss_dssp ET-TSSEEEEC-CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEE
T ss_pred cc-ccceeccc-cccccccccccccce-eEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEe
Confidence 00 00000011 112333333333221 11233345556666666665442 2 344455556666777666554 3323
Q ss_pred cCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccC
Q 042089 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 343 (557)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 343 (557)
-...+..+.+|+.+.+..+ ++......|..|.+|+.+.+.++.++..-...|.+|.+|+.+.+..+ ++..-..+|.+|
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 3344556666666666543 33233445667777777777776666555667777777777777643 444445667777
Q ss_pred CCCcEEEccCc
Q 042089 344 RQLEILYLSEN 354 (557)
Q Consensus 344 ~~L~~L~L~~n 354 (557)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 77777777554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-08 Score=100.40 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=63.0
Q ss_pred ccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc--cccCCCCccEEEccCCcccccchhhhhcCCCC
Q 042089 316 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA--SFLNLSSIMHLYLQKNALSGQIPSTLLRSTEL 393 (557)
Q Consensus 316 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~--~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L 393 (557)
+..+..++.+.+..+ +......++..+..|+.+.+..+ ++ .+. .+..+.+|+.+.+..+ +...-...|.+|++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence 333444444444322 22222334444555555555443 11 111 1124555555555432 332233455566666
Q ss_pred cEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 394 LTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 394 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
+.+.+.++.++.....+|.+|.+|+.+.|..+ ++..-..+|.+|.+|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66666666555444455666666666666543 44333456667777776666443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-10 Score=113.15 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=71.1
Q ss_pred ccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhc--cCCCCcEEEccC--cccccc--c-
Q 042089 288 IKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN--NFRQLEILYLSE--NRLFGS--I- 360 (557)
Q Consensus 288 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~--i- 360 (557)
+...+..++.|+.|++++|.-. .++. + .+++|+.|++..+.+.......++ .+++|+.|+|+. |...+. +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344556677888888776211 2232 2 266777887777776654444444 577788777753 221111 1
Q ss_pred ---cccc--CCCCccEEEccCCcccccchhhhh---cCCCCcEEeCCCCcccccC----CccccCCCCccEEEcCCCccc
Q 042089 361 ---ASFL--NLSSIMHLYLQKNALSGQIPSTLL---RSTELLTLDLRDNKFFGRI----PHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 361 ---~~~~--~~~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~ 428 (557)
+... .+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1111 345666666666665544333333 2345555555555554432 222233445555555555444
Q ss_pred c
Q 042089 429 G 429 (557)
Q Consensus 429 g 429 (557)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-09 Score=107.00 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred cCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccc-ccc--CCCCccEEEccC--Cccccc----
Q 042089 312 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA-SFL--NLSSIMHLYLQK--NALSGQ---- 382 (557)
Q Consensus 312 ~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~-~~~--~~~~L~~L~L~~--n~l~~~---- 382 (557)
++..+..++.|+.|.+++|.-. .++. + .+++|+.|++..|.+..... ... .+++|++|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667899999999987311 2333 3 37899999999988765322 222 689999999863 221111
Q ss_pred -chhhh--hcCCCCcEEeCCCCcccccCCcccc---CCCCccEEEcCCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 383 -IPSTL--LRSTELLTLDLRDNKFFGRIPHQIN---KHSELRVLLLRGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 383 -~p~~l--~~~~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+...+ ..+++|++|++.+|.+++..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 12223 2478999999999999765554443 478999999999999875 3444566799999999999987
Q ss_pred CC
Q 042089 453 GS 454 (557)
Q Consensus 453 g~ 454 (557)
..
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-08 Score=92.06 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred hhccCCCCcEEEccCc-ccccc----ccc-ccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCccccc--
Q 042089 339 QINNFRQLEILYLSEN-RLFGS----IAS-FLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGR-- 406 (557)
Q Consensus 339 ~l~~l~~L~~L~L~~n-~l~~~----i~~-~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~-- 406 (557)
.+...+.|+.|+|++| .+... +.. ....+.|++|+|++|.+.+. +...+...+.|++|+|++|+|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 44321 111 11345666666666666542 445556667788888888887654
Q ss_pred --CCccccCCCCccEEEc--CCCccccc----CCccccCCCCCCEEEccCCcCc
Q 042089 407 --IPHQINKHSELRVLLL--RGNYLQGE----IPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 407 --~p~~l~~l~~L~~L~L--~~N~l~g~----ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+...+...+.|++|+| ++|.++.. +...+...+.|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566677888888 77887754 3345566688888888888875
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-08 Score=88.08 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred cccCCCCCcEEEccCC-cccCc----cCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccccccc
Q 042089 291 GLLNSHGLVVLDISNN-LLSGH----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLFGSIA 361 (557)
Q Consensus 291 ~l~~~~~L~~L~Ls~n-~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~i~ 361 (557)
.+...+.|++|+|++| .+... +...+...+.|++|++++|.+.+. +...+...+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~---------------- 94 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT---------------- 94 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS----------------
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC----------------
Confidence 3444566666666666 55432 223333445555555555555432 2222333344
Q ss_pred cccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeC--CCCcccccC----CccccCCCCccEEEcCCCccc
Q 042089 362 SFLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDL--RDNKFFGRI----PHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 362 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L--~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|++|+|++|.+++. +...+...++|++|++ ++|.+++.. ...+...+.|+.|+|++|.+.
T Consensus 95 -------L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 95 -------LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -------CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -------cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555555554432 3444555556666666 556664432 223334456666666666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-08 Score=92.43 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=30.4
Q ss_pred cCCCCcEEeCCCCcccc--cCCccccCCCCccEEEcCCCcccccCCccccCCC--CCCEEEccCCcCcCCcC
Q 042089 389 RSTELLTLDLRDNKFFG--RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQ--KLRILDLSHNKLNGSIP 456 (557)
Q Consensus 389 ~~~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~--~L~~Ldls~N~l~g~ip 456 (557)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34445555555555544 3334444455555555555555433 1122222 55555555555555444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=87.97 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=33.5
Q ss_pred CCCCCCCEEECCCCcCCc--cCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCccc
Q 042089 25 SDLTGLKVFDISSNQLSG--NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR 92 (557)
Q Consensus 25 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~ 92 (557)
.++++|+.|+|++|++++ .+|..+..+++|++|+|++|.+++.-....+..+ +|++|++.+|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc
Confidence 345555566666665554 3344455555566666666555533111112222 555566655555543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.7e-06 Score=74.72 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=59.3
Q ss_pred CCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCc-ccccCCccccCC----CCccEEEcCCCc-ccccCCccccCCC
Q 042089 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK-FFGRIPHQINKH----SELRVLLLRGNY-LQGEIPIALCQLQ 439 (557)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~ip~~l~~l~ 439 (557)
-..|++||+++|.+++.--..+..|++|++|+|++|. +++..-..++.+ ++|+.|+|++|. ++...-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467777777777766555566777788888887774 666555555553 468888888774 7765555667788
Q ss_pred CCCEEEccCCc
Q 042089 440 KLRILDLSHNK 450 (557)
Q Consensus 440 ~L~~Ldls~N~ 450 (557)
+|+.|++++++
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888876
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1.1e-05 Score=70.86 Aligned_cols=82 Identities=10% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCcEEEccCCcccCccCccccCCCCCcEEEcCCCc-CCCCcchhhccC----CCCcEEEccCcc-ccc-ccccccCCCCc
Q 042089 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH-LEGNIPVQINNF----RQLEILYLSENR-LFG-SIASFLNLSSI 369 (557)
Q Consensus 297 ~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~-~i~~~~~~~~L 369 (557)
.|+.||++++.++..--..+..+++|++|++++|. +++..-..++.+ ++|+.|++++|. ++. .+.....+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333333444444444444442 333333333332 245555555543 332 11222244555
Q ss_pred cEEEccCCc
Q 042089 370 MHLYLQKNA 378 (557)
Q Consensus 370 ~~L~L~~n~ 378 (557)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=65.17 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred cCCCCcEEEccCc-ccccc----ccc-ccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccCCc--
Q 042089 342 NFRQLEILYLSEN-RLFGS----IAS-FLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRIPH-- 409 (557)
Q Consensus 342 ~l~~L~~L~L~~n-~l~~~----i~~-~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~p~-- 409 (557)
+-+.|+.|+|++| .+... +.. ...-+.|+.|+|++|++.+. +...+..-+.|++|+|++|.|++....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666553 44221 111 11345666666666666543 445555667788888888887654333
Q ss_pred --cccCCCCccEEEcCCC---cccc----cCCccccCCCCCCEEEccCCcC
Q 042089 410 --QINKHSELRVLLLRGN---YLQG----EIPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 410 --~l~~l~~L~~L~L~~N---~l~g----~ip~~l~~l~~L~~Ldls~N~l 451 (557)
.+..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344566888888754 3332 2344566667888888876654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00027 Score=63.19 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=34.0
Q ss_pred cCCCCCcEEEccCC-cccC----ccCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccc
Q 042089 293 LNSHGLVVLDISNN-LLSG----HIPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLF 357 (557)
Q Consensus 293 ~~~~~L~~L~Ls~n-~l~~----~~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 357 (557)
..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+|++|++.+. +...+..-+.|+.|+|+.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34556777777764 5542 2333444455666666666666533 2233333445555555555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.006 Score=50.68 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccC
Q 042089 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSN 89 (557)
Q Consensus 53 ~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~ 89 (557)
+|++|+|++|+|+ .+|...+..+++|++|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3455555555554 34444444555555555554443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0067 Score=50.40 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=42.2
Q ss_pred EEeCCCCccc-ccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcC
Q 042089 395 TLDLRDNKFF-GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 395 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g 453 (557)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 6777777774 35665442 358888888888885555667888899999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 557 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-15 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-13 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 7e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 9e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 6e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 88.9 bits (219), Expect = 9e-20
Identities = 65/385 (16%), Positives = 119/385 (30%), Gaps = 30/385 (7%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L + L + N+ + +DL + + ++ + L +L + S+N
Sbjct: 21 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LT ++ + N LK + +
Sbjct: 77 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRH---- 178
+ + + S L N ++ L+N + L + K +
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196
Query: 179 -----LDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRN 233
L +NN + P + T L +L ++ N + ++ + L LDL+ N
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDEL---SLNGNQLKD--IGTLASLTNLTDLDLANN 251
Query: 234 KFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLL 293
+ S ++G L L + N LT L L L N L
Sbjct: 252 QISNLA---PLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 294 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353
L L + N +S P + + + L L + N + + N + L
Sbjct: 307 --KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360
Query: 354 NRLFGSIASFLNLSSIMHLYLQKNA 378
N++ NL+ I L L A
Sbjct: 361 NQISDLTP-LANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.6 bits (174), Expect = 5e-14
Identities = 63/354 (17%), Positives = 123/354 (34%), Gaps = 30/354 (8%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
Q+ LQ +K I + + NL ++ S+N+L P ++N T L + ++NN
Sbjct: 45 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 100
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ + + +N +I G
Sbjct: 101 ------ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282
L ++ L+ + + ++ LT L L NN
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLER-------LDISSNKVSDISVLAKLTNLESLIATNN 207
Query: 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 342
+ G+L + L L ++ N L + + + L L ++ N + P ++
Sbjct: 208 QISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261
Query: 343 FRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNK 402
+L L L N++ I+ L+++ +L L +N L P + L+ L L L N
Sbjct: 262 LTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNN 318
Query: 403 FFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
P ++ ++L+ L N + +L L + L HN+++ P
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 69.6 bits (169), Expect = 2e-13
Identities = 73/355 (20%), Positives = 118/355 (33%), Gaps = 37/355 (10%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
L NLT+++ N L P L +LT L +++NQ++ P + L +
Sbjct: 64 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
N SN + + T ++ + L
Sbjct: 122 ITDIDPLKNLTNLNRLE-------LSSNTISDISALSGLTSLQQLSFGNQV------TDL 168
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
NL L+ ++ TNLE L +NN S I P L L +
Sbjct: 169 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSL 226
Query: 182 SNNNL--IGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDL 239
+ N L IGTL L L +D++ N P + + +L L L N+ S
Sbjct: 227 NGNQLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279
Query: 240 SATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLV 299
+ +LE N NL L L L N+ + L L
Sbjct: 280 PLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK--LQ 332
Query: 300 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSEN 354
L +NN +S + N + ++ L N + P + N ++ L L++
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 67.3 bits (163), Expect = 1e-12
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 16/184 (8%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L NL EL L N L+ L+ LT L D+++NQ+S P ++ LT L L L
Sbjct: 216 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N PL+ LT +NLE ++ N L L L ++ I
Sbjct: 272 ANQISNISPLAGLTALTNLE------LNENQLEDISPISNLKNLTYLTLYFNNISDISPV 325
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L+ L ++NK+ + L N TN+ L +N S + L + + L
Sbjct: 326 -SSLTKLQRLFFANNKVSD--VSSL-ANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 379
Query: 181 ISNN 184
+++
Sbjct: 380 LNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.1 bits (108), Expect = 7e-06
Identities = 62/420 (14%), Positives = 123/420 (29%), Gaps = 78/420 (18%)
Query: 130 LDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGT 189
L + + T L+ RL S G+ L L ++ SNN L
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-----LTQINFSNNQLTDI 81
Query: 190 LPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCAS 249
P T L +++ + + + LF ++ +L+ + +S
Sbjct: 82 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141
Query: 250 LEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS 309
D+S + + L N ++ +
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD---------------ISSNK 186
Query: 310 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSI 369
+ + L+ L+ + N + P+ I L+ L L+ N+L I + +L+++
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-IGTLASLTNL 243
Query: 370 MHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQG 429
L L N +S P + L L L L N+ P N Q
Sbjct: 244 TDLDLANNQISNLAPLSGLTK--LTELKLGANQISNISPLAGLTALTNL----ELNENQL 297
Query: 430 EIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSI 489
E + L+ L L L N ++ P L +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--------------------------VSSLTKL 331
Query: 490 GTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIP 549
L+ + + + + N +++N++ +N+++ P
Sbjct: 332 QR-------LFFANNKVSDVS-------------SLANLTNINWL---SAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 62/362 (17%), Positives = 112/362 (30%), Gaps = 28/362 (7%)
Query: 196 TVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDV 255
T L + M + K N + + ++ ++ L R S V +L ++
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINF 73
Query: 256 SENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW 315
S N NLT+L + + NN L + L +
Sbjct: 74 SNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL--------TGLTLFNNQIT 123
Query: 316 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQ 375
+ L I + LS + NL+++ L +
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183
Query: 376 KNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435
N +S L + E +L +N+ P I + L L L GN L+ L
Sbjct: 184 SNKVSDISVLAKLTNLE--SLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTL 237
Query: 436 CQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNS 495
L L LDL++N+++ P L L + + GL ++ T
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTEL----KLGANQISNISPLAGLTAL-TNLEL 292
Query: 496 TLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGEL 555
+ + L + N + SSL + + + N+++ S + L
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANL 350
Query: 556 PK 557
Sbjct: 351 TN 352
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 74.4 bits (181), Expect = 3e-15
Identities = 59/233 (25%), Positives = 84/233 (36%), Gaps = 2/233 (0%)
Query: 228 LDLSRNKFSGDLS-ATSVNGCASLEYLDVSEN-NFYGHIFPTYMNLTQLRGLYLKNNHFT 285
LDLS +S+ L +L + N G I P LTQL LY+ + + +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 286 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345
G I L LV LD S N LSG +P I + L + N + G IP +F +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405
L + + + S L S +
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSC 458
++ L L LR N + G +P L QL+ L L++S N L G IP
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.1 bits (175), Expect = 2e-14
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 6/281 (2%)
Query: 159 NNSFSGILQLPKVKHDFLRHLDISNNNLIG--TLPQNMGTVLQKLMLIDISKN-NFEGNI 215
N ++ G+L + + +LD+S NL +P ++ L L + I N G I
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93
Query: 216 PYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLR 275
P +I ++ +L L ++ SG ++ +L LD S N G + P+ +L L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 276 GLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 335
G+ N +G I + L + L + +S+N LEG+
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 336 IPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLT 395
V + + + ++L++N L + ++ L L+ N + G +P L + L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 396 LDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALC 436
L++ N G IP Q V N P+ C
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 69.4 bits (168), Expect = 1e-13
Identities = 51/261 (19%), Positives = 84/261 (32%), Gaps = 3/261 (1%)
Query: 125 YNLKFLDLSSNKLVGNFPTWL-MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN 183
Y + LDLS L +P + N L L + + P + H
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243
+ + + + ++ L+ +D S N G +P SI + L + N+ SG + +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 244 VNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDI 303
+ + +S N G I PT+ NL +N S
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIH 227
Query: 304 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASF 363
+G L+ L + N + G +P + + L L +S N L G I
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 364 LNLSSIMHLYLQKNALSGQIP 384
NL N P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 65.5 bits (158), Expect = 2e-12
Identities = 46/253 (18%), Positives = 78/253 (30%), Gaps = 7/253 (2%)
Query: 34 DISSNQLSGN--LPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNL 91
D+S L +PS +ANL L +L + N + + L L + + +
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 92 RFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTN 151
+ + N +P + NL + N++ G P +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 152 LEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
+ +S N +G + + N + + + + F
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 212 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNL 271
+ K L LDL N+ G L + L L+VS NN G I P NL
Sbjct: 236 DLGKVG---LSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEI-PQGGNL 290
Query: 272 TQLRGLYLKNNHF 284
+ NN
Sbjct: 291 QRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 57/266 (21%), Positives = 83/266 (31%), Gaps = 7/266 (2%)
Query: 50 NLTSLEYLVLSDNNFQGEFPL-SLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQ 108
+ L LS N +P+ S L N L L + ++N + QL L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 109 L-PNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQ 167
+ IP FL L LD S N L G P + + NL + N SG +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIP 166
Query: 168 LPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFL 227
L + N L + L L + + S+ +
Sbjct: 167 DSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
+ K S V +L LD+ N YG + L L L + N+ G+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 288 IKAGLLNSHGLVVLDISNNLLSGHIP 313
I N V +NN P
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.6 bits (140), Expect = 5e-10
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
KNL LDLR N + G LP L+ L L ++S N L G +P NL + +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299
Query: 61 DNNFQGEFPLS 71
+N PL
Sbjct: 300 NNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 32 VFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNN 90
D+ +N++ G LP + L L L +S NN GE P NL+ + +NN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.9 bits (107), Expect = 7e-06
Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 6/223 (2%)
Query: 341 NNFRQLEILYLSENRLFGSI---ASFLNLSSIMHLYLQKNA-LSGQIPSTLLRSTELLTL 396
++ L LS L +S NL + LY+ L G IP + + T+L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 397 DLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
+ G IP +++ L L N L G +P ++ L L + N+++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 457 S--CFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQ 514
+ LF +G + + L+ S + + +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 515 VQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
++ ++G+DL N + G +P + +L
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK 170
N +P L L L++S N L G P N +V +NN LP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 48/271 (17%), Positives = 87/271 (32%), Gaps = 33/271 (12%)
Query: 294 NSHGLVVLDISNNLLSG--HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYL 351
++ + LD+S L IP + N YL+ L + +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-------------------- 87
Query: 352 SENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQI 411
N + + L+ + +LY+ +SG IP L + L+TLD N G +P I
Sbjct: 88 --NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 412 NKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN-----KLNGSIPSCFANVLFWR 466
+ L + GN + G IP + KL K+ + + +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 467 EGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFY 526
+ S L + + + + +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 527 NGSSLNYMSGMDLSYNELTGEIPSEIGELPK 557
L+ + ++S+N L GEIP + G L +
Sbjct: 266 QLKFLHSL---NVSFNNLCGEIP-QGGNLQR 292
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (179), Expect = 5e-15
Identities = 52/249 (20%), Positives = 82/249 (32%), Gaps = 4/249 (1%)
Query: 228 LDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGK 287
+ L N+ S + A S C +L L + N + L L L L +N
Sbjct: 37 IFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 288 IKAGLLNS-HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 346
+ + L L + L P + L L + N L+ + L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 347 EILYLSENRLFGSI-ASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG 405
L+L NR+ +F L S+ L L +N ++ P L+TL L N
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 406 RIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFW 465
+ L+ L L N + L+ S +++ S+P A
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK 274
Query: 466 REGNGDLYG 474
R DL G
Sbjct: 275 RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 6e-14
Identities = 44/256 (17%), Positives = 78/256 (30%), Gaps = 4/256 (1%)
Query: 150 TNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKN 209
+ + L N S + L L + +N L + L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 210 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYM 269
P + + L L L +L G A+L+YL + +N T+
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 270 NLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329
+L L L+L N + + H L L + N ++ P + L L +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLR 389
N+L + R L+ L L++N + + + + + +P L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL-- 268
Query: 390 STELLTLDLRDNKFFG 405
L N G
Sbjct: 269 -AGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 8e-10
Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 2/211 (0%)
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 307
A+ + + + N ++ L L+L +N A L LD+S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 308 LSGHI-PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIA-SFLN 365
+ P L L + + L+ P L+ LYL +N L +F +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425
L ++ HL+L N +S L L L N+ PH L L L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456
L AL L+ L+ L L+ N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 8e-10
Identities = 38/258 (14%), Positives = 67/258 (25%), Gaps = 30/258 (11%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ L N + L + + SN L+ + L LE L LSDN
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLH 123
+ L L L + + N +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 124 QYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGIL----------------- 166
NL L L N++ P + +L+ L L N + +
Sbjct: 152 LGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 167 -------QLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSI 219
L++L +++N + + L S + ++P
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLP--- 265
Query: 220 GEMKELFLLDLSRNKFSG 237
+ L L+ N G
Sbjct: 266 QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 8e-09
Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 31/213 (14%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
L L L L L+ P L L+ + N L +L +L +L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSF 120
N P +L+ L L N V P
Sbjct: 162 GNRISS-VPERAFRGLHSLDRLLL------------------------HQNRVAHVHPHA 196
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L L L +N + PT + L+ LRL++N + + + +L+
Sbjct: 197 FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWLQKFR 254
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
S++ + +LPQ L L ++ N+ +G
Sbjct: 255 GSSSEVPCSLPQR----LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 5e-07
Identities = 44/261 (16%), Positives = 72/261 (27%), Gaps = 24/261 (9%)
Query: 298 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLF 357
+ + N +S L +L + N L LE L LS+N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 358 GSIAS--FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
S+ F L + L+L + L P L L L+DN
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGS 475
L L L GN + A L L L L N++ P F ++
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 476 GLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMS 535
LR++ L L+ + + + ++
Sbjct: 214 SALPTEALAPLRALQY-------LRLNDNPW---------------VCDCRARPLWAWLQ 251
Query: 536 GMDLSYNELTGEIPSEIGELP 556
S +E+ +P +
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRD 272
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 6e-14
Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 15/262 (5%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ LDL+ N + +L L + +N++S P A L LE L LS N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 64 FQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNC-SLKVIPSFLL 122
+ E P + L V +R N + + L S +
Sbjct: 91 LK-ELPEKMPKTLQELRVHEN--EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182
L ++ ++ + P L +L L L N + + + L L +S
Sbjct: 148 GMKKLSYIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG----- 237
N++ L + ++ N +P + + K + ++ L N S
Sbjct: 204 FNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 238 DLSATSVNGCASLEYLDVSENN 259
AS + + N
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNP 283
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.3 bits (155), Expect = 6e-12
Identities = 45/198 (22%), Positives = 69/198 (34%), Gaps = 3/198 (1%)
Query: 272 TQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH 331
L L+NN T N L L + NN +S P L+ L +SKN
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 332 LEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRST 391
L+ ++L + ++ S+ + LN ++ L SG
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 392 ELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKL 451
+L + + D IP + L L L GN + +L L L L LS N +
Sbjct: 151 KLSYIRIADTN-ITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 452 NGSIPSCFANVLFWREGN 469
+ AN RE +
Sbjct: 208 SAVDNGSLANTPHLRELH 225
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 41/212 (19%), Positives = 65/212 (30%), Gaps = 3/212 (1%)
Query: 248 ASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL 307
LD+ N + NL L L L NN + L L +S N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 308 LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLS 367
L L V + ++ +N +E+ +F +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 368 SIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYL 427
+ ++ + ++ IP L S L L L NK + + L L L N +
Sbjct: 151 KLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 428 QGEIPIALCQLQKLRILDLSHNKLNGSIPSCF 459
+L LR L L++NKL
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 14/279 (5%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
LD+ NN I + L+ L + + N P + + +L L LS+N+
Sbjct: 33 TALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+L L + +F +N + L +G
Sbjct: 92 K-ELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
L + I++ ++ IP G L L + N + + L L LS N
Sbjct: 150 KKLSYIRIADTNIT-TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 356 LFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFG------RIPH 409
+ L + + N ++P L + + L +N P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266
Query: 410 QINKHSELRVLLLRGNYLQGE--IPIALCQLQKLRILDL 446
K + + L N +Q P + + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.3 bits (142), Expect = 3e-10
Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 16/242 (6%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
LKNL L L N + P + L L+ +S NQL + L L
Sbjct: 53 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH---- 108
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSF 120
N + S+ + + V+ L +L +++ + ++ IP
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168
Query: 121 LLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLD 180
L +L L L NK+ L NL L LS NS S + LR L
Sbjct: 169 LPP--SLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225
Query: 181 ISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG------NIPYSIGEMKELFLLDLSRNK 234
++NN L+ + + ++ + NN P + + L N
Sbjct: 226 LNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283
Query: 235 FS 236
Sbjct: 284 VQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 3/175 (1%)
Query: 382 QIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL 441
++P L T LDL++NK L L+L N + P A L KL
Sbjct: 24 KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 442 RILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWL 501
L LS N+L +P L + + F + + L
Sbjct: 82 ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140
Query: 502 SRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELP 556
+ ++ + ++ + L N++T + + L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.8 bits (107), Expect = 7e-06
Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 14/167 (8%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+ + EL G + L I+ ++ SL L L
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLD 179
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLR--FKTENWIPTFQLKVLQLPNCSLKVIP 118
N SL L L L +S N + T L+ L L N L +P
Sbjct: 180 GNKITKVDAASL----KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235
Query: 119 SFLLHQYNLKFLDLSSNKLVG-----NFPTWLMQNNTNLEVLRLSNN 160
L ++ + L +N + P + + L +N
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (167), Expect = 3e-13
Identities = 61/462 (13%), Positives = 117/462 (25%), Gaps = 27/462 (5%)
Query: 5 NLTELDLRENNL-EGQLPWRLSDLTGLKVFDISSNQLSG----NLPSVIANLTSLEYLVL 59
++ LD++ L + + L L +V + L+ ++ S + +L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 60 SDNNFQGE----FPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK 115
N L T ++ L L L LQ + S
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 116 VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDF 175
++ L+ L ++ + S K
Sbjct: 123 LL-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
++ + ++ ++ L+ L L + I K +
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
GD+ + + + R L K + + L
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
G +L + + S + +
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357
Query: 356 LFGSIASFLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRIPHQI 411
S + L+L +S + +TLL + L LDL +N Q+
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417
Query: 412 -----NKHSELRVLLLRGNYLQGEIPIALCQLQK----LRIL 444
L L+L Y E+ L L+K LR++
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (122), Expect = 1e-07
Identities = 52/450 (11%), Positives = 110/450 (24%), Gaps = 19/450 (4%)
Query: 30 LKVFDISSNQLSGN-LPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVS 88
++ DI +LS ++ L + + L D + + L L +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 89 NNLRFKTENWIPTFQLKVLQLPNCSLKVI------PSFLLHQYNLKFLDLSSNKLVGNFP 142
+N + + L+ LQ P+C ++ + + L +
Sbjct: 64 SN---ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 143 TWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLM 202
L+ + + + + +L +++ P +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG 262
+ + + S +++ L L + V ASL L + N
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 322
L+ VL +L +
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 323 DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQ 382
+L + + S + FL I + L+ +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 383 IPSTLLRSTELLTLDLRDNKF----FGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQL 438
+ L L L D + + + LR L L N L + L +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 439 QK-----LRILDLSHNKLNGSIPSCFANVL 463
+ L L L + + +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (122), Expect = 1e-07
Identities = 50/442 (11%), Positives = 102/442 (23%), Gaps = 30/442 (6%)
Query: 2 KLKNLTELDLRENNLEGQ----LPWRLSDLTGLKVFDISSNQLSGNLPSVIA-----NLT 52
L+ + L + L + L L ++ SN+L +
Sbjct: 25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 84
Query: 53 SLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNC 112
++ L L + G L + L L+ L +S+N QL L +
Sbjct: 85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-----LLGDAGLQLLCEGLLDP 139
Query: 113 SLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVK 172
++ L + ++ P + +N ++ L+ +
Sbjct: 140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 199
Query: 173 HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
+ L+ + + L + + N + L
Sbjct: 200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 259
Query: 233 NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL 292
G +
Sbjct: 260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW- 318
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352
++ S + + + L +L+L+
Sbjct: 319 -VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377
Query: 353 ENRLFGSIASFL-----NLSSIMHLYLQKNALSGQIPSTLLRS-----TELLTLDLRDNK 402
+ + S S L S+ L L N L L+ S L L L D
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437
Query: 403 FFGRIPHQIN----KHSELRVL 420
+ + ++ LRV+
Sbjct: 438 WSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 390 STELLTLDLRDNKF-FGRIPHQINKHSELRVLLLRGNYLQGE----IPIALCQLQKLRIL 444
S ++ +LD++ + R + + +V+ L L I AL L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 445 DLSHNKLNGSIPSCFANVLF 464
+L N+L C L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQ 80
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 9e-04
Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 10/185 (5%)
Query: 368 SIMHLYLQKNALSGQIPSTLLRS-TELLTLDLRDNKF----FGRIPHQINKHSELRVLLL 422
I L +Q LS + LL + + L D I + + L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 423 RGNYLQGEIPIALCQL-----QKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGL 477
R N L + Q K++ L L + L G+ ++ L +L+ S
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 478 DIYFQFGGLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGM 537
+ L G L + + + + +++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 538 DLSYN 542
+
Sbjct: 183 EAGVR 187
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (141), Expect = 2e-10
Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 8/204 (3%)
Query: 176 LRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 235
++ NL LP ++ L +S+N ++ L L+L R +
Sbjct: 12 HLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 236 SGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+ V+G + +N + L L L + N T L
Sbjct: 68 TKL----QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
L L + N L P + L+ L ++ N+L +N L+ L L EN
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 356 LFGSIASFLNLSSIMHLYLQKNAL 379
L+ F + +L N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 40/210 (19%), Positives = 66/210 (31%), Gaps = 10/210 (4%)
Query: 2 KLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSD 61
K+ + E++ + NL LP L + +S N L + + T L L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 62 NNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFL 121
L L+ N L+ L VL + L +P
Sbjct: 65 AELTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 122 LHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI 181
L + P L+ LE L L+NN+ + + + L L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 182 SNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
N+L T+P+ L + N +
Sbjct: 180 QENSLY-TIPKGFFG-SHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 6/210 (2%)
Query: 243 SVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLD 302
V+ AS ++ + N P + L+L N A L+ L L+
Sbjct: 5 EVSKVASHLEVNCDKRNL--TALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 303 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362
+ G L L +S N L+ + + + +
Sbjct: 62 LDRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422
L + LYL+ N L P L + +L L L +N +N L LLL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLN 452
+ N L IP L L N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 10/214 (4%)
Query: 25 SDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRL 84
S + + L+ LP + L LS+N F L+ L ++ L L L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62
Query: 85 LKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTW 144
K + L L L + L+ +P L LD+S N+L
Sbjct: 63 ---DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 145 LMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLI 204
L E+ N L + NN + LP + L+ L +
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 205 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 238
+ +N+ IP L L N + +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 3/168 (1%)
Query: 389 RSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
+ L ++ +P + K +L L N L L +L L+L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 449 NKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFGGLRSIGTYYNSTLDLWLSRDDYAT 508
+L VL + + + S + L + +N L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 509 LHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNELTGEIPSEIGELP 556
Q ++ + + + L+ N LT + L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 4/193 (2%)
Query: 365 NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRG 424
++S + + K L+ +P L + T L L +N + + ++ L L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 425 NYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANVLFWREGNGDLYGSGLDIYFQFG 484
L + L + + + + L L G
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 485 GLRSIGTYYNSTLDLWLSRDDYATLHQRAQVQFVTKNRYEFYNGSSLNYMSGMDLSYNEL 544
L+ + N L ++ + + L + + L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 545 TGEIPSEIGELPK 557
IP
Sbjct: 185 Y-TIPKGFFGSHL 196
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 3e-08
Identities = 36/269 (13%), Positives = 86/269 (31%), Gaps = 11/269 (4%)
Query: 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQ 147
NL + + + + P + + + ++ +DLS++ + + ++
Sbjct: 9 GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68
Query: 148 NNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDI-SNNNLIGTLPQNMGTVLQKLMLIDI 206
+ L+ L L S + K+ L L++ + Q + + +L +++
Sbjct: 69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128
Query: 207 ------SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF 260
++ + + + + + +L L +N DLS +
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188
Query: 261 YGHIFPTYMNLTQLRGLYLKN-NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 319
F + L L+ L L + L L L + + G +
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248
Query: 320 SYLDVLLMSKNHLEGNIPVQINNFRQLEI 348
+L + + +H I N + EI
Sbjct: 249 PHLQI---NCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 38/286 (13%), Positives = 72/286 (25%), Gaps = 21/286 (7%)
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
+ LD++ NL P G +L + ++ +F + +DLS +
Sbjct: 3 QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSH 296
++ C+ L+ L + I T + L L L
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------ 107
Query: 297 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
LLS N S+ + + L + +
Sbjct: 108 --FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165
Query: 357 FGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD-NKFFGRIPHQINKHS 415
S + + L + L L L ++ +
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225
Query: 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFAN 461
L+ L + G G + + L L+I + N
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 24/281 (8%)
Query: 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQG 66
LDL NL + RL G+ F + + L + ++++ LS++ +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60
Query: 67 EFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTF-QLKVLQLPNCSLKVIPSFLLHQY 125
+L+ S L+ L L L N + L L L CS +
Sbjct: 61 STLHGILSQCSKLQNLSL--EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
+ LD + +F +Q ++ + SG + + N
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
L + + ++ L L LSR + +
Sbjct: 179 ----------------HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTG 286
+L+ L V G + L L+ + +HFT
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT 260
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 47.7 bits (112), Expect = 8e-07
Identities = 26/193 (13%), Positives = 58/193 (30%), Gaps = 18/193 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
+ +L++ ++ + ++L + +++ + I L ++ L L+ N
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL+ L N L + + + L +P
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQNN------------TNLEVLRLSNNSFSGILQLPK 170
+ + L + T L+ L LS N S + L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198
Query: 171 VKHDFLRHLDISN 183
+K+ L L++ +
Sbjct: 199 LKN--LDVLELFS 209
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 58/332 (17%), Positives = 99/332 (29%), Gaps = 29/332 (8%)
Query: 4 KNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNN 63
+ EL+L L LP L+ S N L+ LP + +L SL +
Sbjct: 38 RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 64 FQGEFPLSLLTNHSN-----------LEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNC 112
PL SN L+++ V NN K + P+ +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 113 SLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVK 172
L + + S KL + N + L L
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 173 HDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
++ L+ L +L ++ L ++ ++ ++ +I +L
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268
Query: 233 NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGL 292
S + + + SLE L+VS N P +L L NH ++
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPA--LPPRLERLIASFNHLA-EVPELP 323
Query: 293 LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV 324
N L L + N L P + L +
Sbjct: 324 QN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 28/329 (8%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
Q L+L N L +P +L+ L S N L T L + +L+ L + NN+
Sbjct: 39 QAHELELNNLGLSSLPELP---PHLESLVASCNSL-----TELPELPQSLKSLLVDNNNL 90
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEM 222
+ LP + + + + + + + G
Sbjct: 91 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150
Query: 223 KELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF----PTYMNLTQLRGLY 278
+ L +L F + A + + + E+ G+ P NL L +Y
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210
Query: 279 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM--------SKN 330
NN V + +L + S + N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270
Query: 331 HLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRS 390
I + LE L +S N+L A L L N L+ ++P
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLA-EVPELP--- 323
Query: 391 TELLTLDLRDNKFFGRIPHQINKHSELRV 419
L L + N P +LR+
Sbjct: 324 QNLKQLHVEYNP-LREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 67/337 (19%), Positives = 109/337 (32%), Gaps = 29/337 (8%)
Query: 126 NLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185
L+L++ L + L + +LE L S NS + + +LP+ L+ L + NNN
Sbjct: 39 QAHELELNNLGL-----SSLPELPPHLESLVASCNSLTELPELPQS----LKSLLVDNNN 89
Query: 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVN 245
L + + + L + +S N E ++ +D + K DL +
Sbjct: 90 L-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144
Query: 246 GCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISN 305
A L+ I AG L L
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204
Query: 306 NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLN 365
L + + + + V+ N L L S L S F
Sbjct: 205 FLTTIYADNNLLKTL------PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258
Query: 366 LSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425
LS + NA S +I S L L++ +NK +P + L L+ N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFN 314
Query: 426 YLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462
+L E+P Q L+ L + +N L P +V
Sbjct: 315 HLA-EVP---ELPQNLKQLHVEYNPLR-EFPDIPESV 346
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSF 162
L+ L + N L +P+ L+ L S N L P NL+ L + N
Sbjct: 285 SLEELNVSNNKLIELPALP---PRLERLIASFNHL-AEVPELP----QNLKQLHVEYNPL 336
Query: 163 SGILQLPKVKHDFLRHLDISN 183
+P+ + L +++
Sbjct: 337 REFPDIPES----VEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 54/329 (16%), Positives = 95/329 (28%), Gaps = 30/329 (9%)
Query: 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKV 87
++++ LS +LP + +L SL S N+ E P + L+ L V
Sbjct: 38 RQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELP-------ELPQSLKSLLV 85
Query: 88 SNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQ 147
NN + P L + + L + LK +D+ +N L
Sbjct: 86 DNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142
Query: 148 NNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207
+L L + L + + G + + + +
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202
Query: 208 KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT 267
+ L D T + F
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL-------PQSLTFLDVSENI 255
Query: 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 327
+ L++L N + +I++ L L++SNN L +P L
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---A 311
Query: 328 SKNHLEGNIPVQINNFRQLEILYLSENRL 356
S NHL +P N L+ L++ N L
Sbjct: 312 SFNHLA-EVPELPQN---LKQLHVEYNPL 336
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 0.001
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 1 MKLKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLS 60
+L EL++ N L +LP + L+ S N L+ V +L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA----EVPELPQNLKQLHVE 332
Query: 61 DNNFQGEFPLSLLTNHSNLEVLRL 84
N + EFP ++E LR+
Sbjct: 333 YNPLR-EFPDIP----ESVEDLRM 351
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 45.6 bits (106), Expect = 3e-06
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 7/172 (4%)
Query: 41 SGNLPSVIANL-TSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWI 99
L + ++ L+L+DN L +L L L +
Sbjct: 17 GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 100 PTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSN 159
+ ++ N ++ L + LK L+L N++ P ++ +L L L++
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLAS 135
Query: 160 NSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNF 211
N F+ L +LR ++ P ++ + + D+ + F
Sbjct: 136 NPFNCNCHLAWFAE-WLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 44.8 bits (104), Expect = 7e-06
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 6/162 (3%)
Query: 298 LVVLDISNNLLSGHIPCWI-GNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356
L +++N L + G +L L + +N L G P ++ L L EN++
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 357 FGSIA-SFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHS 415
FL L + L L N +S +P + L +L+L N F
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW 150
Query: 416 ELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPS 457
R L G + P +++ ++I DL H++ S +
Sbjct: 151 L-RKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSEN 188
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.2 bits (87), Expect = 9e-04
Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 10/181 (5%)
Query: 177 RHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS 236
+D + L +P+++ +L+L +N G I + L+ L +
Sbjct: 11 TTVDCTGRGLK-EIPRDIPLHTTELLL----NDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 237 GDLSATSVNGCASLEYLDVSENNFYGHIFP-TYMNLTQLRGLYLKNNHFTGKIKAGLLNS 295
+ AS N I ++ L QL+ L L +N + + +
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 296 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355
+ L L++++N + + +L ++ P + R ++I L +
Sbjct: 126 NSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSE 181
Query: 356 L 356
Sbjct: 182 F 182
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 46.0 bits (107), Expect = 6e-06
Identities = 37/327 (11%), Positives = 77/327 (23%), Gaps = 30/327 (9%)
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWL---MQNNTNLEVLRLSNN 160
LK+ + K + + LL ++K + LS N + WL + + +LE+ S+
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 161 SFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIG 220
+ L + L + + + +
Sbjct: 70 FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129
Query: 221 EMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLK 280
+ +L+ A + N + T L
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189
Query: 281 NNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW--------------IGNFSYLDVLL 326
H L+ L + ++ L L
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249
Query: 327 MSKNHLEGNIPVQI------NNFRQLEILYLSENRLFGSIASFL------NLSSIMHLYL 374
++ L + L+ L L N + L + ++ L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 375 QKNALSGQIPSTLLRSTELLTLDLRDN 401
N + + E+ + R
Sbjct: 310 NGNRF-SEEDDVVDEIREVFSTRGRGE 335
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 46/327 (14%), Positives = 96/327 (29%), Gaps = 17/327 (5%)
Query: 29 GLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVS 88
LK+ I++ ++ +V+ S++ +VLS N E L N ++ + L + + S
Sbjct: 9 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 89 NNLRFKTENWIPTFQLKVL----QLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTW 144
+ + ++ IP +L + P + + L +K +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 145 LMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLI 204
L N + + + K K+ I N + + +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 205 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHI 264
+ + I E L L + DL + S ++
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 265 FPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWI-----GNF 319
L RG + F+ L + GL L + N + +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFS------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301
Query: 320 SYLDVLLMSKNHLEGNIPVQINNFRQL 346
L L ++ N ++ R++
Sbjct: 302 PDLLFLELNGNRF-SEEDDVVDEIREV 327
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 18/213 (8%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L N ++ ++N+ + +DL G+ ++ + L +L L L DN
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LT + LE+ + + ++ L + + +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 123 HQYNLKFL------------DLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK 170
+L + S + N + L L+ +N S I L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 171 VKHDFLRHLDISNNNLIGTLPQNMGTVLQKLML 203
+ + L + + NN + P + L + L
Sbjct: 194 LPN--LIEVHLKNNQISDVSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 26/217 (11%), Positives = 65/217 (29%), Gaps = 22/217 (10%)
Query: 198 LQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257
L + I K+N + + ++ + L + + V +L L++ +
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72
Query: 258 NNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG 317
N + L I + ++ +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 318 NFSYLDVLLMSKNHLEGNI--------------PVQINNFRQLEILYLSENRLFGSIASF 363
+ + + L G + N +L L +N++ I+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPL 191
Query: 364 LNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRD 400
+L +++ ++L+ N +S P L ++ L + L +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 33/227 (14%), Positives = 60/227 (26%), Gaps = 18/227 (7%)
Query: 222 MKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKN 281
+ + ++ + ++ ++ + L L L GL LK+
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 282 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 341
N T L L + + + L +
Sbjct: 73 NQITDLAPLKNLTKI---------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123
Query: 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDN 401
L L + L YL + L ++L TL DN
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 402 KFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSH 448
K P + L + L+ N + P+A L I+ L++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 42.0 bits (97), Expect = 6e-05
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 12/170 (7%)
Query: 23 RLSDLTGLKVFDISSNQLSGNLPSV------IANLTSLEYLVLSDNNFQGEFPLSLLTNH 76
+ + + +L G +P + ++ L + ++L LS NN + LS + N
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN- 71
Query: 77 SNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNK 136
LR+L + NL K EN + + S + NL+ L +S+NK
Sbjct: 72 -----LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126
Query: 137 LVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNL 186
+ + LE L L+ N + ++ + NL
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 4/231 (1%)
Query: 5 NLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNF 64
+ +E+ + ++P L +L + LE + +S N+
Sbjct: 9 SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 65 QGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQ 124
+ +N L +R+ K +N L E + L+ L + N +K +P
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 125 YNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLS-NNSFSGILQLPKVKHDFLRHLDISN 183
K L + + + + E + L N + + L L++S+
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 184 NNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNK 234
NN + LP ++ +++DIS+ Y + +K+L K
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (84), Expect = 0.003
Identities = 33/216 (15%), Positives = 54/216 (25%), Gaps = 3/216 (1%)
Query: 111 NCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK 170
+ IPS L N L KL ++ N+ I
Sbjct: 17 ESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74
Query: 171 VKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230
L + I N + + L L + IS + + LLD+
Sbjct: 75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134
Query: 231 SR-NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIK 289
+ V L +++N + NN+
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194
Query: 290 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 325
+ G V+LDIS + + N L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 154 VLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEG 213
VL L++ + + L ++ + HLD+S+N L + L + ++
Sbjct: 2 VLHLAHKDLTVLCHLEQLLL--VTHLDLSHNRLRA----LPPALAALRCLEVLQASDNAL 55
Query: 214 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNF 260
+ + L L L N+ + + C L L++ N+
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 3/106 (2%)
Query: 348 ILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRI 407
+L+L+ L + L + HL L N L P+ L + L + + +
Sbjct: 2 VLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENV 58
Query: 408 PHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNG 453
N +LL Q L +L +L+L N L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 56 YLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLK 115
L L+ + L++L + L ++ L +S+N + + + + +
Sbjct: 2 VLHLAHKD------LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 55
Query: 116 VIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK 170
+ + L+ L L +N+L + + + L +L L NS + +
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.001
Identities = 14/143 (9%), Positives = 42/143 (29%), Gaps = 1/143 (0%)
Query: 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGH 263
+ +++ + + + + L L + + L + G L L + ++
Sbjct: 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 264 IFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD 323
+ +L L L N + ++ N L W+ +
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131
Query: 324 VLLMSKNHLEGNIPVQINNFRQL 346
+ + + L+ + + +
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMPNA 154
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 86 KVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWL 145
K++ L + + + + L L + VI + +D S N++
Sbjct: 2 KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---RKLDG 58
Query: 146 MQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISN---NNLIGTLPQNMGTVLQKLM 202
L+ L ++NN I + L L ++N L P L L
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118
Query: 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSR 232
++ N + Y I ++ ++ +LD +
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 104 LKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFP-TWLMQNNTNLEVLRLSNNSF 162
VL + + + L L+LS+N+L + ++Q NL++L LS N
Sbjct: 44 DVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 103
Query: 163 SGILQLPKVKHDFLRHLDISNNNLIGTLPQN 193
+L K+K L L + N+L T
Sbjct: 104 KSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.002
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 18/189 (9%)
Query: 3 LKNLTELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDN 62
L + L + N+ + +DL + + ++ + L +L + S+N
Sbjct: 17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 72
Query: 63 NFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLL 122
PL LT ++ + N LK + +
Sbjct: 73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 123 HQYNLKFLDLSSNKLVGNFPTWLMQ------------NNTNLEVLRLSNNSFSGILQLPK 170
+ + + S L N T LE L +S+N S I L K
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192
Query: 171 VKHDFLRHL 179
+ + L L
Sbjct: 193 LTN--LESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.8 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.5 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.17 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.08 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.12 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.01 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.73 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.69 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.22 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.15 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=3.2e-32 Score=268.15 Aligned_cols=254 Identities=29% Similarity=0.420 Sum_probs=156.3
Q ss_pred CcEEeCCCCcCcc--cCCccccCCCCCcEEEcCC-CeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccce
Q 042089 201 LMLIDISKNNFEG--NIPYSIGEMKELFLLDLSR-NKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGL 277 (557)
Q Consensus 201 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (557)
++.|+++++.++| .+|..++++++|++|++++ |.+.|.+|..+ .++++|++|++++|.+.+..+..+..+.+|+.+
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhccc
Confidence 3344444444433 2344444444444444443 34444444432 234444444444444444444444445555555
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCC-cEEEcCCCcCCCCcchhhccCCCCcEEEccCccc
Q 042089 278 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL-DVLLMSKNHLEGNIPVQINNFRQLEILYLSENRL 356 (557)
Q Consensus 278 ~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 356 (557)
+++.|.+.+.+|..+..++.++++++++|.+++.+|..+..+..+ +.++++.|++++..|..+..+..+ .++++.+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 555555555555555555566666666666665666555555443 556666666666666655555433 566777776
Q ss_pred cccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccc
Q 042089 357 FGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIAL 435 (557)
Q Consensus 357 ~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 435 (557)
.+.+|... .+++++.+++++|.+.+.+| .+..+++|++|++++|+++|.+|.+++.+++|++|+|++|+++|.+|. +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 66666655 66777777777777776554 567777888888888888888888888888888888888888888874 5
Q ss_pred cCCCCCCEEEccCCc-CcCC-cCcc
Q 042089 436 CQLQKLRILDLSHNK-LNGS-IPSC 458 (557)
Q Consensus 436 ~~l~~L~~Ldls~N~-l~g~-ip~~ 458 (557)
+++++|+.+++++|+ +.|. +|+|
T Consensus 288 ~~L~~L~~l~l~~N~~l~g~plp~c 312 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccCCCCCHHHhCCCccccCCCCCCC
Confidence 778888888888887 5654 6765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=5.3e-31 Score=259.35 Aligned_cols=255 Identities=26% Similarity=0.371 Sum_probs=230.5
Q ss_pred CCccEEECcCCcCcC--CCchhHhhhccCCcEEeCCC-CcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCC
Q 042089 174 DFLRHLDISNNNLIG--TLPQNMGTVLQKLMLIDISK-NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASL 250 (557)
Q Consensus 174 ~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 250 (557)
.+++.|+|+++.++| .+|..++ .+++|++|++++ |.++|.+|.+++++++|++|++++|++.+..+.. +..+..|
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L 127 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred EEEEEEECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhcccccccccccc-ccchhhh
Confidence 358888898888887 5788887 599999999986 8899999999999999999999999998665554 5678999
Q ss_pred cEEeccCCccccccCccccCcccccceecccccccccccccccCCCCC-cEEEccCCcccCccCccccCCCCCcEEEcCC
Q 042089 251 EYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGL-VVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 329 (557)
Q Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L-~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~ 329 (557)
++++++.|.+.+.+|..+..++.++++++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++.
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~ 206 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCS
T ss_pred cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 999999999999999999999999999999999999999999888776 899999999999999998887655 799999
Q ss_pred CcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCc
Q 042089 330 NHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPH 409 (557)
Q Consensus 330 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~ 409 (557)
+...+.+|..+..+++++.+++++|.+.+.++.+..+++|++|++++|+++|.+|..++++++|++|+|++|+++|.+|+
T Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999988877899999999999999999999999999999999999999999995
Q ss_pred cccCCCCccEEEcCCCc-cccc-CC
Q 042089 410 QINKHSELRVLLLRGNY-LQGE-IP 432 (557)
Q Consensus 410 ~l~~l~~L~~L~L~~N~-l~g~-ip 432 (557)
++.+++|+.+++++|+ +.|. +|
T Consensus 287 -~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 287 -GGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp -STTGGGSCGGGTCSSSEEESTTSS
T ss_pred -cccCCCCCHHHhCCCccccCCCCC
Confidence 5789999999999998 4553 44
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.2e-27 Score=241.89 Aligned_cols=190 Identities=25% Similarity=0.300 Sum_probs=136.3
Q ss_pred cCCCCCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcE
Q 042089 245 NGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV 324 (557)
Q Consensus 245 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~ 324 (557)
..+++++.+++++|.+++..+ ...+++|++|++++|.++. + ..+..+++|+.+++++|.+++..+ +..+++|++
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 267 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 267 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCE
Confidence 345566666666666554332 3345566666666666653 2 245566777777777777775433 566777788
Q ss_pred EEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc
Q 042089 325 LLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF 404 (557)
Q Consensus 325 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~ 404 (557)
|++++|++++..+ +..++.++.++++.|.+++ ++....++++++|++++|++++.. .+..+++|++|++++|+++
T Consensus 268 L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~ 342 (384)
T d2omza2 268 LKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS 342 (384)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred eeccCcccCCCCc--ccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence 8887777775432 6677788888888888765 445557788888888888888643 3778889999999999886
Q ss_pred ccCCccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCC
Q 042089 405 GRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHN 449 (557)
Q Consensus 405 ~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N 449 (557)
+ ++ +++.+++|++|++++|++++..| +.++++|+.|+|++|
T Consensus 343 ~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 343 D-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp C-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred C-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 4 33 68889999999999999987654 788999999999887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3.2e-26 Score=231.35 Aligned_cols=342 Identities=23% Similarity=0.255 Sum_probs=220.0
Q ss_pred CCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCccc
Q 042089 26 DLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLK 105 (557)
Q Consensus 26 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 105 (557)
.+.+|++|+++++.++. + +.+..+++|++|+|++|++++ +|+ +++++ +|+
T Consensus 42 ~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~~--l~~L~-------------------------~L~ 91 (384)
T d2omza2 42 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP--LKNLT-------------------------KLV 91 (384)
T ss_dssp HHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG--GTTCT-------------------------TCC
T ss_pred HhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Ccc--ccCCc-------------------------ccc
Confidence 34455666666665552 2 345556666666666666552 221 44444 455
Q ss_pred EEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCc
Q 042089 106 VLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNN 185 (557)
Q Consensus 106 ~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 185 (557)
+|++++|.+..++. ++.+++|+.|+++++.+++..+. .....+.......+.+.......................
T Consensus 92 ~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 167 (384)
T d2omza2 92 DILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD 167 (384)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC
T ss_pred cccccccccccccc-ccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccch
Confidence 55555555544432 55666677777776666633221 244556666666665544322221111112122111111
Q ss_pred CcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccC
Q 042089 186 LIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIF 265 (557)
Q Consensus 186 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 265 (557)
...+ ...+.........+... .+.....+++++.+++++|.+++..+ ...+++|++|++++|.++. +
T Consensus 168 -----~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~--~ 234 (384)
T d2omza2 168 -----LKPL-ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD--I 234 (384)
T ss_dssp -----CGGG-TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC--C
T ss_pred -----hhhh-ccccccccccccccccc--cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCC--c
Confidence 1111 12334444444444433 33456677788888888888774433 2346788888888887764 2
Q ss_pred ccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCC
Q 042089 266 PTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ 345 (557)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 345 (557)
+.+..+++|+.+++++|.+++..+ +..+++|++|+++++.+++.. .+..++.++.+.++.|.+++. ..+..+++
T Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~ 308 (384)
T d2omza2 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKN 308 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTT
T ss_pred chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcc
Confidence 356777888888888888876443 667888999999988887653 366788889999999888853 34778889
Q ss_pred CcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCC
Q 042089 346 LEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGN 425 (557)
Q Consensus 346 L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 425 (557)
++.|++++|++++. +.+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| +.++++|+.|+|++|
T Consensus 309 l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 309 LTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CSEEECCSSCCSCC-GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred cCeEECCCCCCCCC-cccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 99999999998864 445678999999999999884 44 68899999999999999987654 788999999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.6e-23 Score=204.52 Aligned_cols=266 Identities=22% Similarity=0.256 Sum_probs=153.6
Q ss_pred CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
+..+.++-+++.++ ++|..+. +.+++|++++|+++...+.+|.++++|++|++++|.+. .++...+..+++|++|
T Consensus 10 c~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L 84 (305)
T d1xkua_ 10 CHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 84 (305)
T ss_dssp EETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEE
T ss_pred ecCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEe
Confidence 36777888877777 7777653 56888888888887544456778888888888888877 4544455677777888
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcc--cCccCccccCCCCCcEEEcCCCc
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL--SGHIPCWIGNFSYLDVLLMSKNH 331 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l--~~~~p~~l~~~~~L~~L~l~~n~ 331 (557)
++++|+++. +|..+ ...++.|.+.+|.+.+..+..+.....+..++...|.. ....+..+..+++|+.+++++|.
T Consensus 85 ~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~ 161 (305)
T d1xkua_ 85 YLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161 (305)
T ss_dssp ECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred cccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence 887777753 33322 24566666666666655555555556666666665532 23334445555566666666655
Q ss_pred CCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCcc
Q 042089 332 LEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQ 410 (557)
Q Consensus 332 l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~ 410 (557)
++. +|..+ +++|+.|++++|..++..+..+ .++.+++|++++|.+++..+.++.++++|++|+|++|+++ .+|.+
T Consensus 162 l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~ 237 (305)
T d1xkua_ 162 ITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237 (305)
T ss_dssp CCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred ccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence 542 23222 3455555555555554444333 4555555555555555544555555555555555555553 34555
Q ss_pred ccCCCCccEEEcCCCcccccCCcc------ccCCCCCCEEEccCCcC
Q 042089 411 INKHSELRVLLLRGNYLQGEIPIA------LCQLQKLRILDLSHNKL 451 (557)
Q Consensus 411 l~~l~~L~~L~L~~N~l~g~ip~~------l~~l~~L~~Ldls~N~l 451 (557)
+..+++|++|+|++|+++..-... .....+|+.|+|++|++
T Consensus 238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 555555555555555555221111 22344555555555554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.6e-23 Score=204.55 Aligned_cols=266 Identities=21% Similarity=0.208 Sum_probs=148.3
Q ss_pred CCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEc
Q 042089 151 NLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDL 230 (557)
Q Consensus 151 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 230 (557)
..+.++.++..++.. |..-.+++++|++++|+++ .+|...+..+++|+.|++++|.+....|..|.++++|++|++
T Consensus 11 ~~~~~~C~~~~L~~l---P~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l 86 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKV---PKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86 (305)
T ss_dssp ETTEEECTTSCCCSC---CCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCEEEecCCCCCcc---CCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence 345555555555432 2222345666666666665 444433334566666666666666555556666666666666
Q ss_pred CCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccccc--ccccccccCCCCCcEEEccCCcc
Q 042089 231 SRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLL 308 (557)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~~~~L~~L~Ls~n~l 308 (557)
++|+++ .+|... ...++.|++..|.+.+..+..+.....++.+....+... ...+..+..+++|+.+++++|.+
T Consensus 87 ~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l 162 (305)
T d1xkua_ 87 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162 (305)
T ss_dssp CSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred cCCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence 666665 454432 245566666666665444444444455555555554322 22334455556666666666665
Q ss_pred cCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhh
Q 042089 309 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTL 387 (557)
Q Consensus 309 ~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l 387 (557)
+. +|..+ +++|+.|++++|..++..+..+..++.+++|++++|.+.+..+..+ .+++|++|+|++|+++ .+|.++
T Consensus 163 ~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l 238 (305)
T d1xkua_ 163 TT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238 (305)
T ss_dssp CS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence 53 33322 3566666666666666666666666666666666666665444433 5666666666666665 455566
Q ss_pred hcCCCCcEEeCCCCcccccCCcc------ccCCCCccEEEcCCCccc
Q 042089 388 LRSTELLTLDLRDNKFFGRIPHQ------INKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 388 ~~~~~L~~L~L~~N~l~~~~p~~------l~~l~~L~~L~L~~N~l~ 428 (557)
.++++|++|++++|+|+..-... ....++|+.|+|++|.+.
T Consensus 239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 66666666666666665322222 223455666666666653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.2e-24 Score=207.31 Aligned_cols=222 Identities=22% Similarity=0.215 Sum_probs=140.6
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEecc-
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVS- 256 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls- 256 (557)
.++.++.+++ .+|..+. +.+++|+|++|+++...+.+|.++++|++|++++|.+. .++...+..+..++.++..
T Consensus 15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence 4555666666 6666552 45777788887777555556777777888888777776 4444555566677776654
Q ss_pred CCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCc
Q 042089 257 ENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 336 (557)
Q Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~ 336 (557)
.+.++...+..+..+++|++|+++.|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|++++..
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 34444444555666666777777766666555555556666667777766666655566666666666666666666555
Q ss_pred chhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccc
Q 042089 337 PVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFF 404 (557)
Q Consensus 337 ~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~ 404 (557)
+..+..+++|+++++++|++++..|..+ .+++|++|++++|++.+..|..+.++++|++|++++|++.
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 5666666666666666666665444444 5566666666666666555556666666666666666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.8e-24 Score=204.54 Aligned_cols=224 Identities=24% Similarity=0.264 Sum_probs=128.1
Q ss_pred EeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceeccccc
Q 042089 204 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNH 283 (557)
Q Consensus 204 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (557)
++.+++.++ .+|..+. +.+++|+|++|+++ .+|...+.++++|++|++++|.+....+..+..+
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~------------ 79 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGL------------ 79 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC------------
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccc------------
Confidence 344444444 4444332 34566666666665 4454444555555555555555554444444444
Q ss_pred ccccccccccCCCCCcEEEcc-CCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 284 FTGKIKAGLLNSHGLVVLDIS-NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 284 ~~~~~~~~l~~~~~L~~L~Ls-~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
..++.++.. .+.++...+..+.++++|++|++++|.+....+..+..+++|+.+++++|++++..+.
T Consensus 80 ------------~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~ 147 (284)
T d1ozna_ 80 ------------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (284)
T ss_dssp ------------TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ------------ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChh
Confidence 444444433 2333333444455555555555555555544444555555555556655555543333
Q ss_pred cc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCC
Q 042089 363 FL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKL 441 (557)
Q Consensus 363 ~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L 441 (557)
.+ .+++|++|++++|++++..+..+.++++|+++++++|++++..|.+|..+++|++|++++|++.+..|..+..+++|
T Consensus 148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L 227 (284)
T d1ozna_ 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence 33 45566666666666665556666666777777777777766666777777777777777777776666666677777
Q ss_pred CEEEccCCcCcCCc
Q 042089 442 RILDLSHNKLNGSI 455 (557)
Q Consensus 442 ~~Ldls~N~l~g~i 455 (557)
+.|++++|++.+.-
T Consensus 228 ~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 228 QYLRLNDNPWVCDC 241 (284)
T ss_dssp CEEECCSSCEECSG
T ss_pred CEEEecCCCCCCCc
Confidence 77777777776543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.1e-21 Score=184.14 Aligned_cols=178 Identities=26% Similarity=0.260 Sum_probs=131.2
Q ss_pred cccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEcc
Q 042089 273 QLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLS 352 (557)
Q Consensus 273 ~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 352 (557)
++++|+|++|.+++..+..|..+++|++|++++|.++. +| .++.+++|++|++++|++++ .+..+..+++|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence 45555555555554444555556666666666666553 22 23456666666666666663 35556667777777777
Q ss_pred Cccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccC
Q 042089 353 ENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 353 ~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
+|.+.+..+... .+.++++|++++|.++...+..+..++.++.+++++|++++..+.++..+++|++|+|++|+++ .+
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence 777765444433 6778888888888888666777778899999999999998888888999999999999999999 89
Q ss_pred CccccCCCCCCEEEccCCcCcCC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|+.+..+++|+.|+|++|++...
T Consensus 188 p~~~~~~~~L~~L~L~~Np~~Cd 210 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNPWLCN 210 (266)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCS
T ss_pred ChhHCCCCCCCEEEecCCCCCCC
Confidence 99999999999999999999753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.3e-21 Score=181.07 Aligned_cols=176 Identities=27% Similarity=0.267 Sum_probs=108.1
Q ss_pred CCcEEeccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcC
Q 042089 249 SLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 328 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~ 328 (557)
++++|+|++|.+++..+..+..+++|++|++++|+++. ++ .++.+++|++|++++|++++ ++..+..++.|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence 34444444444443333334444444444444444442 22 12345566666666666553 34455566666666666
Q ss_pred CCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccC
Q 042089 329 KNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRI 407 (557)
Q Consensus 329 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~ 407 (557)
+|.+.+..+..+..+.+++.|++++|.+....+..+ .++.++.+++++|++++..+..+..+++|++|+|++|+|+ .+
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence 666665555666666677777777776665444444 5677777777777777666667777778888888888876 67
Q ss_pred CccccCCCCccEEEcCCCccc
Q 042089 408 PHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~ 428 (557)
|+.+..+++|+.|+|++|.+.
T Consensus 188 p~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhHCCCCCCCEEEecCCCCC
Confidence 777777778888888888665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.4e-22 Score=205.09 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=69.0
Q ss_pred CcCEEeCCCCCCccc-CCccCCCCCCCCEEECCCCcCCc----cCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCC
Q 042089 5 NLTELDLRENNLEGQ-LPWRLSDLTGLKVFDISSNQLSG----NLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNL 79 (557)
Q Consensus 5 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L 79 (557)
+|++||++++++++. +.+.+..++++++|+|++|.++. .++..+..+++|++|||++|.++..--......+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l--- 79 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL--- 79 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT---
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH---
Confidence 577788888777754 23445566777777777777663 3345566777777777777766421100111110
Q ss_pred cEEEecCccCcccccCCCCCCCCcccEEECCCCCCCC-----cChhhhCCCCCcEEEccCCcCcCC
Q 042089 80 EVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKV-----IPSFLLHQYNLKFLDLSSNKLVGN 140 (557)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----ip~~l~~~~~L~~L~Ls~n~l~~~ 140 (557)
.....+|++|++++|.++. ++..+..+++|++|++++|.+++.
T Consensus 80 ------------------~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 127 (460)
T d1z7xw1 80 ------------------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127 (460)
T ss_dssp ------------------CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred ------------------hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence 0122356666666666632 445566777888888888877643
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=1.2e-17 Score=165.22 Aligned_cols=314 Identities=25% Similarity=0.281 Sum_probs=166.1
Q ss_pred CCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEE
Q 042089 28 TGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVL 107 (557)
Q Consensus 28 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 107 (557)
.++++|||+++.++ .+|+. .++|++|+|++|+|+ .+|.. ..+|+.|++++|..+.. +. + ...|++|
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~--l--p~~L~~L 103 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SD--L--PPLLEYL 103 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CS--C--CTTCCEE
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchh-hh--h--ccccccc
Confidence 35777788877776 56653 457778888888777 66632 35677777777665421 11 1 1257778
Q ss_pred ECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCc
Q 042089 108 QLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187 (557)
Q Consensus 108 ~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (557)
++++|.+..+|. ++.+++|++|+++++.+.. .+. ....+..+.+..+..... .....++.++.+++..|...
T Consensus 104 ~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~-~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 104 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp ECCSSCCSSCCC-CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCS
T ss_pred cccccccccccc-hhhhccceeeccccccccc-ccc----ccccccchhhcccccccc--ccccccccceeccccccccc
Confidence 888887777775 4667788888888777763 332 345566676665554433 33445666777777776655
Q ss_pred CCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCcc
Q 042089 188 GTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPT 267 (557)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 267 (557)
.++.. ....+.+....+.+. .++ .+..++.|+.+++++|... .++. ...++..+.+..+.+.... .
T Consensus 176 -~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~~-~- 241 (353)
T d1jl5a_ 176 -KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP-E- 241 (353)
T ss_dssp -SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC-C-
T ss_pred -ccccc----ccccccccccccccc-ccc-ccccccccccccccccccc-cccc----ccccccccccccccccccc-c-
Confidence 22221 122344444444433 222 3455666666666666543 2221 2334555555555443211 1
Q ss_pred ccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCc
Q 042089 268 YMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLE 347 (557)
Q Consensus 268 ~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 347 (557)
. ...+...++..+.+.+. +.. .......++..+.+.+. ...+++|+
T Consensus 242 --~------------------------~~~l~~~~~~~~~~~~l-~~l---~~~~~~~~~~~~~~~~~----~~~~~~L~ 287 (353)
T d1jl5a_ 242 --L------------------------PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL----CDLPPSLE 287 (353)
T ss_dssp --C------------------------CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE----CCCCTTCC
T ss_pred --c------------------------ccccccccccccccccc-ccc---cchhcccccccCccccc----cccCCCCC
Confidence 1 12333333333322211 000 01222333333333211 12235566
Q ss_pred EEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEc
Q 042089 348 ILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422 (557)
Q Consensus 348 ~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 422 (557)
+|++++|+++ .+|.. +++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|.... +|+.|.+
T Consensus 288 ~L~Ls~N~l~-~lp~~--~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~---~L~~L~~ 351 (353)
T d1jl5a_ 288 ELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE---SVEDLRM 351 (353)
T ss_dssp EEECCSSCCS-CCCCC--CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT---TCCEEEC
T ss_pred EEECCCCccC-ccccc--cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc---ccCeeEC
Confidence 6666666655 33432 456666777777666 45532 356778888888775 5665332 3555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=6.6e-18 Score=167.22 Aligned_cols=308 Identities=25% Similarity=0.274 Sum_probs=192.4
Q ss_pred cccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECc
Q 042089 103 QLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDIS 182 (557)
Q Consensus 103 ~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 182 (557)
++++|+|++++++.+|+. .++|++|++++|+++ .+|. ...+|+.|++++|.++..... .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECC
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhh----cccccccccc
Confidence 567777777777777753 356788888888877 6664 345778888888777654322 2457888888
Q ss_pred CCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCcccc
Q 042089 183 NNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYG 262 (557)
Q Consensus 183 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 262 (557)
+|.+. .+|.. + .+++|+.++++++.+... +.. ...+..+.+..+.... ...+..++.++.+++..|....
T Consensus 107 ~n~l~-~lp~~-~-~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 107 NNQLE-KLPEL-Q-NSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SSCCS-SCCCC-T-TCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSS
T ss_pred ccccc-cccch-h-hhccceeecccccccccc-ccc---cccccchhhccccccc---cccccccccceecccccccccc
Confidence 88776 55642 2 467788888877776632 222 3455666666555431 1223456777778877776643
Q ss_pred ccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhcc
Q 042089 263 HIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 342 (557)
Q Consensus 263 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 342 (557)
.. .. ....+.+....+.+. .++ .+..++.++.+++++|.... ++. ....+..+.+..+.+... +. .
T Consensus 177 ~~-~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~ 242 (353)
T d1jl5a_ 177 LP-DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---L 242 (353)
T ss_dssp CC-CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---C
T ss_pred cc-cc---ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-cc---c
Confidence 21 11 122334444444433 233 34567788888888876553 333 234567777777776532 21 2
Q ss_pred CCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEc
Q 042089 343 FRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLL 422 (557)
Q Consensus 343 l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 422 (557)
.+.+...++..+.+.+. +. -.......++..+.+.+. + ..+++|++|++++|+++ .+|.+ +++|+.|+|
T Consensus 243 ~~~l~~~~~~~~~~~~l-~~--l~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L 311 (353)
T d1jl5a_ 243 PQSLTFLDVSENIFSGL-SE--LPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA 311 (353)
T ss_dssp CTTCCEEECCSSCCSEE-SC--CCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred ccccccccccccccccc-cc--ccchhcccccccCccccc-c---ccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence 34566677766655431 11 123345566777766532 2 33578999999999986 67754 567999999
Q ss_pred CCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 423 ~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
++|+++ .+|.. +++|+.|++++|+++ .+|.....+
T Consensus 312 ~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L 346 (353)
T d1jl5a_ 312 SFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESV 346 (353)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTC
T ss_pred CCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccccc
Confidence 999998 67753 468999999999987 666544333
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.8e-21 Score=200.51 Aligned_cols=189 Identities=20% Similarity=0.107 Sum_probs=108.2
Q ss_pred Ccccccceecccccccc-----cccccccCCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCCcchhh
Q 042089 270 NLTQLRGLYLKNNHFTG-----KIKAGLLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGNIPVQI 340 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~-----~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~~~~~l 340 (557)
..+.++.+++..|.+.. ..+........++.+++++|.+... ....+...+.++.+++++|.+++.....+
T Consensus 224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l 303 (460)
T d1z7xw1 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303 (460)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34555666666655432 1222333455667777776665432 22334445666777777776654322222
Q ss_pred -----ccCCCCcEEEccCccccccc----cccc-CCCCccEEEccCCccccc----chhhhh-cCCCCcEEeCCCCcccc
Q 042089 341 -----NNFRQLEILYLSENRLFGSI----ASFL-NLSSIMHLYLQKNALSGQ----IPSTLL-RSTELLTLDLRDNKFFG 405 (557)
Q Consensus 341 -----~~l~~L~~L~L~~n~l~~~i----~~~~-~~~~L~~L~L~~n~l~~~----~p~~l~-~~~~L~~L~L~~N~l~~ 405 (557)
.....|+.+++++|.++... .... ..++|++|+|++|++++. ++..+. ..+.|++|++++|++++
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 383 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence 12346777777777665432 1111 456677777777777643 333343 35667788888887765
Q ss_pred c----CCccccCCCCccEEEcCCCcccccCCccc----c-CCCCCCEEEccCCcCcCCcCcc
Q 042089 406 R----IPHQINKHSELRVLLLRGNYLQGEIPIAL----C-QLQKLRILDLSHNKLNGSIPSC 458 (557)
Q Consensus 406 ~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~l----~-~l~~L~~Ldls~N~l~g~ip~~ 458 (557)
. ++..+..+++|++|+|++|+++......+ . +...|+.|++.+|.++...+..
T Consensus 384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~ 445 (460)
T d1z7xw1 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445 (460)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence 3 33445566778888888887775433332 2 3346888888888887554443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=3e-17 Score=152.18 Aligned_cols=204 Identities=19% Similarity=0.278 Sum_probs=115.9
Q ss_pred EEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccCCccccccCccccCcccccceecccc
Q 042089 203 LIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFPTYMNLTQLRGLYLKNN 282 (557)
Q Consensus 203 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (557)
.++++.+++++.+ .+..+.+|+.|++.+|.++ .++. +..+++|++|++++|.+.+..
T Consensus 23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~------------------ 79 (227)
T d1h6ua2 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLA------------------ 79 (227)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG------------------
T ss_pred HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeeccc------------------
Confidence 3445555555432 3345556666666666554 3321 234555555555555554321
Q ss_pred cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccc
Q 042089 283 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIAS 362 (557)
Q Consensus 283 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~ 362 (557)
| +..+++++++++++|.++. + ..+..+++|+.++++++...+.. .+...+.++.+.++.+.+... ..
T Consensus 80 ------~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~ 146 (227)
T d1h6ua2 80 ------P--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI-SP 146 (227)
T ss_dssp ------G--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG
T ss_pred ------c--ccccccccccccccccccc-c-ccccccccccccccccccccccc--hhccccchhhhhchhhhhchh-hh
Confidence 1 3444455555555554442 1 12445555555555555544322 234455666666666665432 22
Q ss_pred ccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCcccccCCccccCCCCCC
Q 042089 363 FLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLR 442 (557)
Q Consensus 363 ~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~ 442 (557)
+..+++|++|++++|.+.+.. .+.++++|+.|++++|++++ +| .++.+++|++|+|++|++++. | .+.++++|+
T Consensus 147 ~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~ 220 (227)
T d1h6ua2 147 LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLF 220 (227)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCC
T ss_pred hccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCC
Confidence 345666777777777766332 36777788888888887764 33 367778888888888887743 3 367788888
Q ss_pred EEEccC
Q 042089 443 ILDLSH 448 (557)
Q Consensus 443 ~Ldls~ 448 (557)
+|++++
T Consensus 221 ~L~lsn 226 (227)
T d1h6ua2 221 IVTLTN 226 (227)
T ss_dssp EEEEEE
T ss_pred EEEeeC
Confidence 888763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.1e-18 Score=157.36 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=129.2
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
++++.++.+++ .+|+.+. +++++||+++|+++...+..|.++++|++|++++|.+...++...+.+++.++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 44555555555 4555443 35666666666665433345566666666666666655555544455555555555443
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCCC-cChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCc
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLKV-IPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGI 165 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 165 (557)
+ +.+.. .+..+..+++|+++++++|.+....+......++.+..+...++.+...
T Consensus 88 ~------------------------n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i 143 (242)
T d1xwdc1 88 A------------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 143 (242)
T ss_dssp C------------------------TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred c------------------------ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence 2 22322 2234556666777777777665332322223445555555565555544
Q ss_pred ccCCcccC-CCccEEECcCCcCcCCCchhHhhhccCCcEE-eCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCccc
Q 042089 166 LQLPKVKH-DFLRHLDISNNNLIGTLPQNMGTVLQKLMLI-DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 243 (557)
Q Consensus 166 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 243 (557)
....+..+ ..++.+++++|+++ .++...+. ..++..+ ++.+|+++...+..|.++++|++|++++|+++ .+|...
T Consensus 144 ~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~ 220 (242)
T d1xwdc1 144 ERNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 220 (242)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSS
T ss_pred cccccccccccceeeeccccccc-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHH
Confidence 33333333 36778888888877 55555543 4454444 56777777443445788899999999999887 777776
Q ss_pred ccCCCCCcEEeccC
Q 042089 244 VNGCASLEYLDVSE 257 (557)
Q Consensus 244 ~~~~~~L~~L~Ls~ 257 (557)
+.++++|+.+++.+
T Consensus 221 ~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 221 LENLKKLRARSTYN 234 (242)
T ss_dssp CTTCCEEESSSEES
T ss_pred HcCCcccccCcCCC
Confidence 77777777766543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=3.2e-17 Score=152.00 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=128.4
Q ss_pred CCccEEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEE
Q 042089 174 DFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYL 253 (557)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (557)
.++..++++.+++++.++ . ..+.+|+.|++.+|.++. + ..+.++++|++|++++|.+.+..+ +..+++++++
T Consensus 19 ~~~~~~~l~~~~~~d~~~--~-~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l 90 (227)
T d1h6ua2 19 ANAIKIAAGKSNVTDTVT--Q-ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITEL 90 (227)
T ss_dssp HHHHHHHTTCSSTTSEEC--H-HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEE
T ss_pred HHHHHHHhCCCCcCCcCC--H-HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc---cccccccccc
Confidence 334456777787776543 2 247899999999999984 5 368999999999999999984332 5678999999
Q ss_pred eccCCccccccCccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCC
Q 042089 254 DVSENNFYGHIFPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE 333 (557)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~ 333 (557)
++++|.++. + ..+..+++|+.+.++++...+.. .+...+.++.+.++++.+.... .+..+++|++|++++|.+.
T Consensus 91 ~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~ 164 (227)
T d1h6ua2 91 ELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVS 164 (227)
T ss_dssp ECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC
T ss_pred ccccccccc-c-ccccccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccc
Confidence 999987753 2 34556677777777766655332 2334555666666555544322 1334444455554444443
Q ss_pred CCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccC
Q 042089 334 GNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413 (557)
Q Consensus 334 ~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~ 413 (557)
+. +.+..+++|++|++++|++++ ++ .+.++++|++|++++|++++. | .++.
T Consensus 165 ~~-------------------------~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~ 215 (227)
T d1h6ua2 165 DL-------------------------TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLAN 215 (227)
T ss_dssp CC-------------------------GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTT
T ss_pred cc-------------------------hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-cccc
Confidence 22 223345555555555555553 22 255666666666666666532 2 2566
Q ss_pred CCCccEEEcC
Q 042089 414 HSELRVLLLR 423 (557)
Q Consensus 414 l~~L~~L~L~ 423 (557)
+++|++|+++
T Consensus 216 l~~L~~L~ls 225 (227)
T d1h6ua2 216 TSNLFIVTLT 225 (227)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEee
Confidence 6666666664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=5.4e-17 Score=148.35 Aligned_cols=165 Identities=24% Similarity=0.386 Sum_probs=109.3
Q ss_pred cccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEE
Q 042089 271 LTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILY 350 (557)
Q Consensus 271 l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 350 (557)
+.+|++|++++|.++.. + .+..+++|++|++++|.+++.. .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 44555555555555432 1 2445666667777666666532 24566677777777777663 33 466677777777
Q ss_pred ccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccccc
Q 042089 351 LSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQGE 430 (557)
Q Consensus 351 L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 430 (557)
+++|.+. .++....++.++++++++|.+++ +..+..+++|+++++++|++++ ++ .++.+++|+.|+|++|+++ .
T Consensus 119 l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~ 192 (210)
T d1h6ta2 119 LEHNGIS-DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D 192 (210)
T ss_dssp CTTSCCC-CCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred ccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence 7777664 34555567777777777777764 2346677888888888888864 33 3777888888888888887 4
Q ss_pred CCccccCCCCCCEEEccC
Q 042089 431 IPIALCQLQKLRILDLSH 448 (557)
Q Consensus 431 ip~~l~~l~~L~~Ldls~ 448 (557)
+| .+..+++|++|+|++
T Consensus 193 l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 193 LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CG-GGTTCTTCSEEEEEE
T ss_pred Ch-hhcCCCCCCEEEccC
Confidence 54 578888888888764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.1e-17 Score=154.89 Aligned_cols=220 Identities=18% Similarity=0.148 Sum_probs=155.8
Q ss_pred CEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECC
Q 042089 31 KVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLP 110 (557)
Q Consensus 31 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 110 (557)
++++.++.+++ .+|+.+. +++++|++++|.++ .+|...|.++++|++|++++|.....++..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~-------------- 72 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD-------------- 72 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSS--------------
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecc--------------
Confidence 67888888887 7776653 57889999999887 677666777777777777776554333322
Q ss_pred CCCCCCcChhhhCCCCCcEEEccC-CcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCc-ccCCCccEEECcCCcCcC
Q 042089 111 NCSLKVIPSFLLHQYNLKFLDLSS-NKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPK-VKHDFLRHLDISNNNLIG 188 (557)
Q Consensus 111 ~n~l~~ip~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~ 188 (557)
.+..+++++++++.. |++....+ ..+.++++|+++++++|.+........ ..+..++.+...++.+.
T Consensus 73 ---------~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~- 141 (242)
T d1xwdc1 73 ---------VFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH- 141 (242)
T ss_dssp ---------SEESCTTCCEEEEECCTTCCEECT-TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-
T ss_pred ---------cccccccccccccccccccccccc-ccccccccccccccchhhhcccccccccccccccccccccccccc-
Confidence 345677888888764 56664444 445689999999999999876532222 24556666666776665
Q ss_pred CCchhHhhhc-cCCcEEeCCCCcCcccCCccccCCCCCcEE-EcCCCeeeeecCcccccCCCCCcEEeccCCccccccCc
Q 042089 189 TLPQNMGTVL-QKLMLIDISKNNFEGNIPYSIGEMKELFLL-DLSRNKFSGDLSATSVNGCASLEYLDVSENNFYGHIFP 266 (557)
Q Consensus 189 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 266 (557)
.++...+..+ ..++.+++++|.++. ++.......+++.+ ++++|.++ .+|...+.++++|++|++++|.++...+.
T Consensus 142 ~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 219 (242)
T d1xwdc1 142 TIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY 219 (242)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred cccccccccccccceeeecccccccc-cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence 4443332233 478999999999984 44444555666555 46777787 78888888999999999999999865555
Q ss_pred cccCcccccceeccc
Q 042089 267 TYMNLTQLRGLYLKN 281 (557)
Q Consensus 267 ~~~~l~~L~~L~L~~ 281 (557)
.+.++++|+.+++.+
T Consensus 220 ~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 220 GLENLKKLRARSTYN 234 (242)
T ss_dssp SCTTCCEEESSSEES
T ss_pred HHcCCcccccCcCCC
Confidence 678888888887754
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=5.8e-16 Score=140.13 Aligned_cols=176 Identities=22% Similarity=0.250 Sum_probs=125.8
Q ss_pred eCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccC
Q 042089 10 DLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSN 89 (557)
Q Consensus 10 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~ 89 (557)
.++.+.+++.++ ...+.++++|++++|.++. + +.+..+++|++|++++|++++ ++. ++++++|++|++++|..
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCC
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc--ccCCccccccccccccc
Confidence 455566655433 2456778888888888773 3 357778888888888888874 332 67888888888887765
Q ss_pred cccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCC
Q 042089 90 NLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLP 169 (557)
Q Consensus 90 ~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 169 (557)
.... .+..+..|++|+++++....++ .+..+++|+.|++++|++. .++. + ..+++|+.|++.+|.+++. .+
T Consensus 97 ~~~~---~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l-~~~~~L~~L~l~~n~l~~l--~~ 167 (199)
T d2omxa2 97 ADIT---PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTIS-DISA-L-SGLTSLQQLNFSSNQVTDL--KP 167 (199)
T ss_dssp CCCG---GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCCCC--GG
T ss_pred cccc---cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhc-cccc-c-cccccccccccccccccCC--cc
Confidence 4322 2456778888888888775554 4677888899999888887 4553 3 4788899999998888876 34
Q ss_pred cccCCCccEEECcCCcCcCCCchhHhhhccCCcEE
Q 042089 170 KVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLI 204 (557)
Q Consensus 170 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 204 (557)
+..+++|++|++++|+++ .++ .++ .+++|+.|
T Consensus 168 l~~l~~L~~L~ls~N~i~-~i~-~l~-~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNKVS-DIS-VLA-KLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEE
T ss_pred ccCCCCCCEEECCCCCCC-CCc-ccc-CCCCCCcC
Confidence 667888999999999887 454 343 47788765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=7e-16 Score=139.59 Aligned_cols=125 Identities=26% Similarity=0.364 Sum_probs=50.1
Q ss_pred CCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEc
Q 042089 295 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYL 374 (557)
Q Consensus 295 ~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L 374 (557)
+++|++|++++|.+++..| ++++++|++|++++|.+.. ++ .+..++.|+.+++++|.... ++....+++|+.|++
T Consensus 61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l 135 (199)
T d2omxa2 61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLEL 135 (199)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEEC
T ss_pred CCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccccccccc-ccccchhhhhHHhhh
Confidence 4444444444444443221 3344444444444444332 11 13344444444444444332 122223444444444
Q ss_pred cCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCccc
Q 042089 375 QKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNYLQ 428 (557)
Q Consensus 375 ~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 428 (557)
++|++.. ++ .+..+++|+.|++.+|++++. ..++.+++|+.|++++|+++
T Consensus 136 ~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 136 SSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp CSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred hhhhhcc-cc-cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence 4444431 22 234444444444444444321 12344444444444444444
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.7e-17 Score=155.48 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=143.3
Q ss_pred EEECcCCcCcCCCchhHhhhccCCcEEeCCCCcCcccCCccccCCCCCcEEEcCCCeeeeecCcccccCCCCCcEEeccC
Q 042089 178 HLDISNNNLIGTLPQNMGTVLQKLMLIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVNGCASLEYLDVSE 257 (557)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~ 257 (557)
.+|++++.+.......+.. .....+.++.......+ .......+|++||++++.+.+......+..|++|++|++++
T Consensus 4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp EEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred EEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 6677776654333333321 23455666555444222 22334557777777777766544444556677777777777
Q ss_pred CccccccCccccCcccccceecccc-cccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCc-CCCC
Q 042089 258 NNFYGHIFPTYMNLTQLRGLYLKNN-HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNH-LEGN 335 (557)
Q Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~-l~~~ 335 (557)
+.+++..+..+..+++|++|+++++ .++... +......+++|++|++++|. +++.
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~-----------------------l~~l~~~~~~L~~L~ls~c~~~~~~ 137 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-----------------------LQTLLSSCSRLDELNLSWCFDFTEK 137 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-----------------------HHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccc-----------------------cchhhHHHHhccccccccccccccc
Confidence 6665555555555555555555553 232110 11112234444555554432 2211
Q ss_pred -cchhhc-cCCCCcEEEccCcc--ccc-cccccc-CCCCccEEEccCCc-ccccchhhhhcCCCCcEEeCCCC-cccccC
Q 042089 336 -IPVQIN-NFRQLEILYLSENR--LFG-SIASFL-NLSSIMHLYLQKNA-LSGQIPSTLLRSTELLTLDLRDN-KFFGRI 407 (557)
Q Consensus 336 -~~~~l~-~l~~L~~L~L~~n~--l~~-~i~~~~-~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~N-~l~~~~ 407 (557)
+...+. .++.|+.|+++++. ++. .+.... .+++|++|++++|. +++..+..+.++++|++|++++| .+++..
T Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence 112222 23566666666542 222 122232 56777777777754 66667777888888888888884 677777
Q ss_pred CccccCCCCccEEEcCCCcccccCCccccCCCCCCEEEccCCcCcCCcCcccccc
Q 042089 408 PHQINKHSELRVLLLRGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIPSCFANV 462 (557)
Q Consensus 408 p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~l 462 (557)
...++.+++|+.|+++++.-.+.++.....+|+|+ +..+++++..++.+++.
T Consensus 218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~ 269 (284)
T d2astb2 218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK 269 (284)
T ss_dssp GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence 77788888888888888722222332234566654 57788887766666543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=6.8e-17 Score=145.50 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCcEEeccCCcccccc-CccccCcccccceecccccccccccccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEc
Q 042089 249 SLEYLDVSENNFYGHI-FPTYMNLTQLRGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 327 (557)
Q Consensus 249 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l 327 (557)
++++|+|++|.+++.+ +..+..+++|++|++++|.+.+..+..+...++|++|++++|+++...|.+|.++++|++|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 4444444444444322 223344445555555555555444455555555555555555555555555555555555555
Q ss_pred CCCcCCCCcchhhccCCCCcEEEccCccccc
Q 042089 328 SKNHLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 328 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
++|++++..+..|..+++|++++|++|.+..
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccccccCHHHhcCCccccccccccccccc
Confidence 5555555555555555556666665555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1e-15 Score=139.71 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=52.0
Q ss_pred CCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCcccEEECCCCCCCCcChhhhCCCCCcEE
Q 042089 51 LTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQLKVLQLPNCSLKVIPSFLLHQYNLKFL 130 (557)
Q Consensus 51 l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~~~~L~~L 130 (557)
+.+|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+..+| .+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~~-l~--~l~~l~~L~~L~L~~n~i~~l~~---~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCCC-ch--hHhhCCCCCEEeCCCccccCccc---cccCccccccccccccccccc-ccccccccccc
Confidence 3445555555555442 22 13344444444444443332111 123344444444444444444 24444555555
Q ss_pred EccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCc
Q 042089 131 DLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLI 187 (557)
Q Consensus 131 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (557)
++++|.+. .++. +.++++++.+++++|.+++. .....+++|+++++++|+++
T Consensus 118 ~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~ 169 (210)
T d1h6ta2 118 SLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (210)
T ss_dssp ECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cccccccc-cccc--cccccccccccccccccccc--cccccccccccccccccccc
Confidence 55555443 2221 12444444444444444332 12223344444444444433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7.1e-17 Score=154.82 Aligned_cols=257 Identities=17% Similarity=0.179 Sum_probs=143.8
Q ss_pred cEEEccCCcCcCCCcHHHhhcCCCCCEEEccCccccCcccCCcccCCCccEEECcCCcCcCCCchhHhhhccCCcEEeCC
Q 042089 128 KFLDLSSNKLVGNFPTWLMQNNTNLEVLRLSNNSFSGILQLPKVKHDFLRHLDISNNNLIGTLPQNMGTVLQKLMLIDIS 207 (557)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 207 (557)
+++|++++.+.+.+...+.. .....+.+......... .......+|++|+++++.+++.....+...+++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 57788887776444444432 23556666655544321 2223556899999999887765555566678999999999
Q ss_pred CCcCcccCCccccCCCCCcEEEcCCCe-eeeecCcccccCCCCCcEEeccCCc-cccc-cCcccc-Ccccccceecccc-
Q 042089 208 KNNFEGNIPYSIGEMKELFLLDLSRNK-FSGDLSATSVNGCASLEYLDVSENN-FYGH-IFPTYM-NLTQLRGLYLKNN- 282 (557)
Q Consensus 208 ~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~-~~~~~~-~l~~L~~L~L~~n- 282 (557)
++.+++..+..++.+++|++|+++++. +++..-..+...+++|++|+++++. ++.. +...+. .+++|+.|+++++
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 998887777888888999999998864 5432223334567888888888753 3321 111111 2345666666543
Q ss_pred -ccccc-ccccccCCCCCcEEEccCC-cccCccCccccCCCCCcEEEcCCC-cCCCCcchhhccCCCCcEEEccCccccc
Q 042089 283 -HFTGK-IKAGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKN-HLEGNIPVQINNFRQLEILYLSENRLFG 358 (557)
Q Consensus 283 -~~~~~-~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 358 (557)
.++.. +......+++|++|++++| .+++.....+.++++|++|++++| .+++.....+++
T Consensus 160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~---------------- 223 (284)
T d2astb2 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE---------------- 223 (284)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG----------------
T ss_pred cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc----------------
Confidence 22211 2222234455555555543 344444444444455555555543 333333333444
Q ss_pred ccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccC
Q 042089 359 SIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINK 413 (557)
Q Consensus 359 ~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~ 413 (557)
+++|++|++.++--.+.++.....+++|+ +..+++++..+..++.
T Consensus 224 -------~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 224 -------IPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp -------CTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred -------CCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 45555555555522223333334455554 3556666655555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.64 E-value=1.8e-16 Score=142.73 Aligned_cols=172 Identities=21% Similarity=0.252 Sum_probs=114.5
Q ss_pred cceecccccccccccccccCCCCCcEEEccCCcccCcc-CccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccC
Q 042089 275 RGLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI-PCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSE 353 (557)
Q Consensus 275 ~~L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 353 (557)
++++.++++++ .+|..+ .+++++|+|++|.+++.+ +..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 34555555555 445444 256777777777776543 45566777777777777777777777777777777777777
Q ss_pred ccccccccccc-CCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCC-ccccCCCCccEEEcCCCcccccC
Q 042089 354 NRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIP-HQINKHSELRVLLLRGNYLQGEI 431 (557)
Q Consensus 354 n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~i 431 (557)
|+++...+..+ ++++|++|+|++|++++..|.+|..+++|++|+|++|++..... .|+. ..++.+.+..+.++...
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence 77776555444 67777788888888776667777788888888888887754332 1222 22455566677777666
Q ss_pred CccccCCCCCCEEEccCCcCcCC
Q 042089 432 PIALCQLQKLRILDLSHNKLNGS 454 (557)
Q Consensus 432 p~~l~~l~~L~~Ldls~N~l~g~ 454 (557)
|.. +..++.+|++.|.|...
T Consensus 166 p~~---l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 166 PSK---VRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp STT---TTTSBGGGSCTTTCCCC
T ss_pred Chh---hcCCEeeecCHhhCcCC
Confidence 654 34566778888887643
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=1.3e-15 Score=150.36 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=118.6
Q ss_pred Ccccccceeccccccccc----ccccccCCCCCcEEEccCCcccCccCc-------------cccCCCCCcEEEcCCCcC
Q 042089 270 NLTQLRGLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPC-------------WIGNFSYLDVLLMSKNHL 332 (557)
Q Consensus 270 ~l~~L~~L~L~~n~~~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~-------------~l~~~~~L~~L~l~~n~l 332 (557)
.+++|+.|++++|.++.. +...+..+++|++|++++|.++..... .....+.|+.+++++|.+
T Consensus 91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence 344555555555554432 222333455666666666655321110 112345677777777776
Q ss_pred CCC----cchhhccCCCCcEEEccCcccccc-----ccc-ccCCCCccEEEccCCccccc----chhhhhcCCCCcEEeC
Q 042089 333 EGN----IPVQINNFRQLEILYLSENRLFGS-----IAS-FLNLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDL 398 (557)
Q Consensus 333 ~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----i~~-~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L 398 (557)
+.. +...+..++.|+.|++++|.+... +.. ...+++|++|++++|.++.. +...+..+++|++|++
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L 250 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence 643 334456677888888888887542 122 23678888899998887643 5567788999999999
Q ss_pred CCCcccccCCccc----c--CCCCccEEEcCCCccccc----CCcccc-CCCCCCEEEccCCcCcC
Q 042089 399 RDNKFFGRIPHQI----N--KHSELRVLLLRGNYLQGE----IPIALC-QLQKLRILDLSHNKLNG 453 (557)
Q Consensus 399 ~~N~l~~~~p~~l----~--~l~~L~~L~L~~N~l~g~----ip~~l~-~l~~L~~Ldls~N~l~g 453 (557)
++|++++.....+ . ..+.|+.|++++|+++.. +...+. ++++|+.||+++|+|..
T Consensus 251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 9999976544433 2 246799999999998754 333443 67899999999999974
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.1e-14 Score=124.66 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecCccCcccccCCCCCCCCc
Q 042089 24 LSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLKVSNNLRFKTENWIPTFQ 103 (557)
Q Consensus 24 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 103 (557)
+.+..+++.|||++|+++ .+|..+..+++|++|+|++|.++ .++ .+..+++|++|++++|.+.. ++...+..+++
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~ 88 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD 88 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccC-CCccccccccc
Confidence 455666667777777666 34555556666777777777666 444 25666667777777666543 22222345667
Q ss_pred ccEEECCCCCCCCcCh--hhhCCCCCcEEEccCCcCcCCCc---HHHhhcCCCCCEEEc
Q 042089 104 LKVLQLPNCSLKVIPS--FLLHQYNLKFLDLSSNKLVGNFP---TWLMQNNTNLEVLRL 157 (557)
Q Consensus 104 L~~L~L~~n~l~~ip~--~l~~~~~L~~L~Ls~n~l~~~~p---~~~~~~l~~L~~L~L 157 (557)
|++|++++|.+..+++ .+..+++|++|++++|.++ ..| ..++..+++|++||-
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence 7777777777766654 5778888999999988887 344 234557889988874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.4e-14 Score=121.17 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEe
Q 042089 318 NFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLD 397 (557)
Q Consensus 318 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 397 (557)
++..+++|++++|+++. ++..+..+++|++|++++|.++ .++.+..+++|++|++++|+++...+..+..+++|++|+
T Consensus 16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence 34445555555555542 2333445555666666666554 234444566666666666666644444455677777777
Q ss_pred CCCCcccccC-CccccCCCCccEEEcCCCcccccCC----ccccCCCCCCEEE
Q 042089 398 LRDNKFFGRI-PHQINKHSELRVLLLRGNYLQGEIP----IALCQLQKLRILD 445 (557)
Q Consensus 398 L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip----~~l~~l~~L~~Ld 445 (557)
+++|+++... ...+..+++|+.|++++|.++. .| ..+..+++|++||
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred eccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 7777765321 1356667777777777777663 33 2356677777765
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.46 E-value=1.7e-14 Score=142.22 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=92.0
Q ss_pred CCCCCcEEEccCCcccCc----cCccccCCCCCcEEEcCCCcCCCC-----cchhhccCCCCcEEEccCcccccc----c
Q 042089 294 NSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN-----IPVQINNFRQLEILYLSENRLFGS----I 360 (557)
Q Consensus 294 ~~~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----i 360 (557)
..+.|+.+++++|.++.. +...+..++.|+.|++++|.+... +...+..+++|+.|++++|.++.. +
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence 356777888887776532 333445567788888888877642 334566778888888888887542 2
Q ss_pred c-cccCCCCccEEEccCCccccc----chhhhhc--CCCCcEEeCCCCcccccC----Ccccc-CCCCccEEEcCCCccc
Q 042089 361 A-SFLNLSSIMHLYLQKNALSGQ----IPSTLLR--STELLTLDLRDNKFFGRI----PHQIN-KHSELRVLLLRGNYLQ 428 (557)
Q Consensus 361 ~-~~~~~~~L~~L~L~~n~l~~~----~p~~l~~--~~~L~~L~L~~N~l~~~~----p~~l~-~l~~L~~L~L~~N~l~ 428 (557)
. ....+++|++|++++|.+++. +...+.. .+.|++|++++|+++... ...+. .++.|+.|+|++|++.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 2 223678888888888888765 2333333 357889999999886543 33332 4678999999999886
Q ss_pred c
Q 042089 429 G 429 (557)
Q Consensus 429 g 429 (557)
.
T Consensus 316 ~ 316 (344)
T d2ca6a1 316 E 316 (344)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=2e-13 Score=112.58 Aligned_cols=118 Identities=28% Similarity=0.316 Sum_probs=79.3
Q ss_pred CEEeCCCCCCcccCCccCCCCCCCCEEECCCCcCCccCchhccCCCCCCEEeCcCcccCcccChhhhcCCCCCcEEEecC
Q 042089 7 TELDLRENNLEGQLPWRLSDLTGLKVFDISSNQLSGNLPSVIANLTSLEYLVLSDNNFQGEFPLSLLTNHSNLEVLRLLK 86 (557)
Q Consensus 7 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~g~~p~~~~~~l~~L~~L~l~~ 86 (557)
|+|+|++|+++ .++ .++.+++|++||+++|.++ .+|+.++.+++|++|++++|.++ .+| .+.++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l---------- 64 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANL---------- 64 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTC----------
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccc----------
Confidence 56777777776 334 4677777777777777776 56666777777777777777776 333 14444
Q ss_pred ccCcccccCCCCCCCCcccEEECCCCCCCCcC--hhhhCCCCCcEEEccCCcCcC--CCcHHHhhcCCCCCEE
Q 042089 87 VSNNLRFKTENWIPTFQLKVLQLPNCSLKVIP--SFLLHQYNLKFLDLSSNKLVG--NFPTWLMQNNTNLEVL 155 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ip--~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L 155 (557)
++|++|++++|.+..+| ..+..+++|++|++++|++++ ..+..+...+++|+.+
T Consensus 65 ---------------~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 65 ---------------PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp ---------------SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ---------------cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 45555555566665554 356778888888888888763 3455566677888776
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.8e-13 Score=111.70 Aligned_cols=103 Identities=27% Similarity=0.327 Sum_probs=69.9
Q ss_pred cEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEEEcCCCc
Q 042089 347 EILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 347 ~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 426 (557)
++|++++|+++ .++....++.|++|++++|+++ .+|..+..+++|++|++++|++++ +| .++.+++|+.|++++|+
T Consensus 1 R~L~Ls~n~l~-~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCS-SCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCC-CCcccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence 45666666665 3444446667777777777776 466667777777777777777753 33 46777777777777777
Q ss_pred ccccC-CccccCCCCCCEEEccCCcCcC
Q 042089 427 LQGEI-PIALCQLQKLRILDLSHNKLNG 453 (557)
Q Consensus 427 l~g~i-p~~l~~l~~L~~Ldls~N~l~g 453 (557)
++... +..+..+++|+.+|+++|++++
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 77432 2456777788888888887763
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=2.4e-13 Score=122.17 Aligned_cols=127 Identities=22% Similarity=0.311 Sum_probs=68.1
Q ss_pred ccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCccccccccccc-CCCCccEEEccCCcccccchhhhhcCCC
Q 042089 314 CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFL-NLSSIMHLYLQKNALSGQIPSTLLRSTE 392 (557)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~~~~ 392 (557)
..+..+++|++|++++|+++. ++ .+..+++|+.|++++|.++ .++... .++.|++|++++|+++. ++ .+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHH
T ss_pred hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccccc
Confidence 344445555555555555552 22 3555556666666666554 233322 33456666666666653 22 3555666
Q ss_pred CcEEeCCCCcccccCC-ccccCCCCccEEEcCCCcccccCCcc----------ccCCCCCCEEE
Q 042089 393 LLTLDLRDNKFFGRIP-HQINKHSELRVLLLRGNYLQGEIPIA----------LCQLQKLRILD 445 (557)
Q Consensus 393 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~----------l~~l~~L~~Ld 445 (557)
|++|++++|+++.... .++..+++|+.|+|++|++....+.. +..+|+|+.||
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 6666666666643211 34566666666666666665433321 45566777665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=3.4e-13 Score=121.13 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=84.7
Q ss_pred cccccCCCCCcEEEccCCcccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcccccccccccCCCC
Q 042089 289 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENRLFGSIASFLNLSS 368 (557)
Q Consensus 289 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~~ 368 (557)
+..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|.++. ++.+..+++
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~ 116 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHH
T ss_pred hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-ccccccccc
Confidence 3455566677777777777663 33 3666777777777777766 345444555677777777777763 444456777
Q ss_pred ccEEEccCCcccccch-hhhhcCCCCcEEeCCCCcccccCCcc----------ccCCCCccEEE
Q 042089 369 IMHLYLQKNALSGQIP-STLLRSTELLTLDLRDNKFFGRIPHQ----------INKHSELRVLL 421 (557)
Q Consensus 369 L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~N~l~~~~p~~----------l~~l~~L~~L~ 421 (557)
|++|++++|+++.... ..+..+++|++|++++|++....+.. +..+|+|+.||
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 7788888877764321 45777888888888888775544332 45678888876
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=7.8e-11 Score=100.98 Aligned_cols=110 Identities=20% Similarity=0.128 Sum_probs=84.5
Q ss_pred cCCCCcEEEccCcccccccccccCCCCccEEEccCCc-ccccchhhhhcCCCCcEEeCCCCcccccCCccccCCCCccEE
Q 042089 342 NFRQLEILYLSENRLFGSIASFLNLSSIMHLYLQKNA-LSGQIPSTLLRSTELLTLDLRDNKFFGRIPHQINKHSELRVL 420 (557)
Q Consensus 342 ~l~~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 420 (557)
.+...+.++.+++.+...+..+..+++|++|++++|+ ++..-+..|.++++|+.|++++|+|+...|.+|..+++|++|
T Consensus 6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 3444556677766665443344467788888887664 776566778889999999999999988778889999999999
Q ss_pred EcCCCcccccCCccccCCCCCCEEEccCCcCc
Q 042089 421 LLRGNYLQGEIPIALCQLQKLRILDLSHNKLN 452 (557)
Q Consensus 421 ~L~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~ 452 (557)
+|++|+++ .+|........|+.|+|++|++.
T Consensus 86 ~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred eccCCCCc-ccChhhhccccccccccCCCccc
Confidence 99999998 56655445557999999999996
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.4e-10 Score=97.81 Aligned_cols=102 Identities=23% Similarity=0.065 Sum_probs=46.4
Q ss_pred eecccccccccccccccCCCCCcEEEccCC-cccCccCccccCCCCCcEEEcCCCcCCCCcchhhccCCCCcEEEccCcc
Q 042089 277 LYLKNNHFTGKIKAGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLEILYLSENR 355 (557)
Q Consensus 277 L~L~~n~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 355 (557)
++.+++.++ ..|..+..+++|++|++++| .++..-+..|.++++|+.|++++|+++...+.+|..+++|++|+|++|+
T Consensus 13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 91 (156)
T d2ifga3 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (156)
T ss_dssp EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence 334433333 23333444455555555433 2443333445555555555555555554444445555555555555555
Q ss_pred cccccccccCCCCccEEEccCCcc
Q 042089 356 LFGSIASFLNLSSIMHLYLQKNAL 379 (557)
Q Consensus 356 l~~~i~~~~~~~~L~~L~L~~n~l 379 (557)
++...+..+....|+.|+|++|.+
T Consensus 92 l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 92 LESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CcccChhhhccccccccccCCCcc
Confidence 543222222333344444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.5e-08 Score=82.46 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=7.4
Q ss_pred hhcCCCCcEEeCCCCcc
Q 042089 387 LLRSTELLTLDLRDNKF 403 (557)
Q Consensus 387 l~~~~~L~~L~L~~N~l 403 (557)
+..+++|+.|++++|++
T Consensus 87 ~~~l~~L~~L~Ls~N~i 103 (162)
T d1koha1 87 VQKAPNLKILNLSGNEL 103 (162)
T ss_dssp HHHSTTCCCCCCTTSCC
T ss_pred HhhCCcccccccccCcc
Confidence 33344444444444444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.4e-07 Score=79.16 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCcEEEccCcccccccccccCCCCccEEEccCCcccccchhhhhcCCCCcEEeCCCCccccc--CCccccCCCCccEEEc
Q 042089 345 QLEILYLSENRLFGSIASFLNLSSIMHLYLQKNALSGQIPSTLLRSTELLTLDLRDNKFFGR--IPHQINKHSELRVLLL 422 (557)
Q Consensus 345 ~L~~L~L~~n~l~~~i~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L 422 (557)
..+.|++++.... +.......+..++...+.. ..++.....++.|++|++++|+++.. ++..+..+++|+.|+|
T Consensus 23 ~~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L 98 (162)
T d1koha1 23 SQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98 (162)
T ss_dssp SSCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred hhCeeecccCCCC---chhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence 3455566554432 2222222333333333333 24555667899999999999999764 3455678999999999
Q ss_pred CCCcccccCCccccCCCCCCEEEccCCcCcCCcC
Q 042089 423 RGNYLQGEIPIALCQLQKLRILDLSHNKLNGSIP 456 (557)
Q Consensus 423 ~~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip 456 (557)
++|+++..-+-.......|+.+++++|++++...
T Consensus 99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~ 132 (162)
T d1koha1 99 SGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132 (162)
T ss_dssp TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred ccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence 9999995444344455689999999999986544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.73 E-value=9.8e-06 Score=69.17 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=47.0
Q ss_pred CCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccCC----ccccCCCCccEEEcCCCcccc-------
Q 042089 365 NLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRIP----HQINKHSELRVLLLRGNYLQG------- 429 (557)
Q Consensus 365 ~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g------- 429 (557)
..+.|++|++++|.+... +...+...+.|++|++++|.+++... ..+...+.|+.|++++|.+..
T Consensus 42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~ 121 (167)
T d1pgva_ 42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 121 (167)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence 344455555555555432 33444555666677777666654322 233445667777776665432
Q ss_pred cCCccccCCCCCCEEEccCCc
Q 042089 430 EIPIALCQLQKLRILDLSHNK 450 (557)
Q Consensus 430 ~ip~~l~~l~~L~~Ldls~N~ 450 (557)
.+...+...+.|+.|+++.+.
T Consensus 122 ~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 122 DMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhCCCccEeeCcCCC
Confidence 133445556777777776553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.69 E-value=1.6e-05 Score=67.80 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=28.6
Q ss_pred CCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccc-------cCCccccCCCCccEEEcCCCc
Q 042089 366 LSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFG-------RIPHQINKHSELRVLLLRGNY 426 (557)
Q Consensus 366 ~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~-------~~p~~l~~l~~L~~L~L~~N~ 426 (557)
.+.|++|++++|.+++. +...+...++|++|++++|.+.. .+...+...+.|+.|+++.+.
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 34445555555544432 22344445556666665554321 122333345566666665443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.22 E-value=6.6e-05 Score=63.71 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=50.4
Q ss_pred CCCCccEEEccCCccccc----chhhhhcCCCCcEEeCCCCcccccC----CccccCCCCccEEEc--CCCcccc----c
Q 042089 365 NLSSIMHLYLQKNALSGQ----IPSTLLRSTELLTLDLRDNKFFGRI----PHQINKHSELRVLLL--RGNYLQG----E 430 (557)
Q Consensus 365 ~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L--~~N~l~g----~ 430 (557)
..+.|++|++++|.++.. +...+...+.++.+++++|.++... ...+...++|+.++| ++|++.. .
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~ 123 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 123 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence 445566666666655433 3334455667777777777665432 234455666766444 4555643 2
Q ss_pred CCccccCCCCCCEEEccCCcC
Q 042089 431 IPIALCQLQKLRILDLSHNKL 451 (557)
Q Consensus 431 ip~~l~~l~~L~~Ldls~N~l 451 (557)
+...+...+.|+.|+++.+..
T Consensus 124 La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 124 IANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeCcCCCC
Confidence 344556777888888876554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.15 E-value=0.00017 Score=61.00 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=30.3
Q ss_pred CCCCCcEEEccC-CcccCc----cCccccCCCCCcEEEcCCCcCCCC----cchhhccCCCCcEEEccCcccc
Q 042089 294 NSHGLVVLDISN-NLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLEILYLSENRLF 357 (557)
Q Consensus 294 ~~~~L~~L~Ls~-n~l~~~----~p~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 357 (557)
+.+.|++|++++ +.++.. +...+...++|++|++++|.++.. +...+...+.++.+++++|.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 345566666654 234321 223333455555555555555432 2223334455555555555543
|