Citrus Sinensis ID: 042099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
AHRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHcHHccccEEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEEEEEccccccccHHHHHHHHHHHccccEEcccHHccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
ahrlsphglsahglsahessahgssahgsfahgsfahgssahefsthgssahglfshglsahgssahelsahglsahrksahgnndvrlNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYkrkngqfvipVFYHGTvyelqgqrvffggdafveherwfkEHPEIVQKWREELTDasrlsgfrFTITSR
Flexible Loop (DISEMBL)
AHRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKtfiddrelrqveeirpdllkgfeVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWReeltdasrlsgfrftitsr
Low Complexity Region (SEG)
AHRLSPHGlsahglsahessahgssahgsfahgsfahgssaheFSTHGSSAhglfshglsahgssahELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITSR
Disordered region (IsUnstruct)
*******************************************************************************************HALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRF*****
Disordered Region (DISOPRED)
********************************GSFAHGSSAHEFSTHGS********************SAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWF***PEIVQKWREELTDASRLSGFRFTIT**
Disordered Region (DISEMBL)
**********AHGLSAH*********HGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITSR
Disordered Region (DISPRO)
*****************************************************************AHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AHRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.524	0.101	0.367	9e-13
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.565	0.096	0.345	2e-09
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.533	0.333	0.299	8e-07
O82500	1095	Putative disease resistan	no	no	0.561	0.113	0.323	3e-05
Q3URU2	1571	Paternally-expressed gene	yes	no	0.348	0.049	0.280	0.0005
Q9SYC9	571	Vesicle-associated protei	no	no	0.823	0.318	0.251	0.0007

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 97  KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156
           K +KTF DD+ L     I  +L K  E  +  ++   + +  S  CLNELV+I E K + 
Sbjct: 38  KGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRF 97

Query: 157 GQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
            Q VIP+FY      ++ Q+  F   AF EHE  +K+  E +Q+WR  L +A+ L G
Sbjct: 98  KQTVIPIFYDVDPSHVRNQKESF-AKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 86  DVR--LNSHAL--CRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTL 141
           DVR    SH L   R    TFIDD E+ +   I P+LL   +  +I ++   K +  ST 
Sbjct: 22  DVRDSFLSHLLKELRGKAITFIDD-EIERSRSIGPELLSAIKESRIAIVIFSKNYASSTW 80

Query: 142 CLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKW 201
           CLNELVEI +      Q VIP+F+H    E++ Q   F G  F E  +   E  +  Q W
Sbjct: 81  CLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEF-GKVFEETCKAKSEDEK--QSW 137

Query: 202 REELTDASRLSGF 214
           ++ L   + ++G+
Sbjct: 138 KQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           A+   ++  FID  E+   + +  +L    +  ++ V+   K +  S  CL+EL EI + 
Sbjct: 36  AMREANINVFIDKDEVVGTDLV--NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDC 93

Query: 153 KRKNGQFVIPVFYH---GTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDAS 209
             + G   IP+FY     +V EL+G      GD F   +  +K  PE  QKW+E L    
Sbjct: 94  INQGGLNAIPIFYKLAPSSVLELKGG----FGDTFRVLKEKYKNDPERTQKWQEALESIP 149

Query: 210 RLSGFRF 216
           +L G R 
Sbjct: 150 KLKGLRL 156

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 86  DVRLN--SHALCR---KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
           DVR N  SH L     K + TF DD  +++   I  +L       KI V+   + +  S+
Sbjct: 21  DVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISVVLFSENYASSS 79

Query: 141 LCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQK 200
            CL+EL+EI + K + G  V+PVFY     +++ Q   FG       E    +  E    
Sbjct: 80  WCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL---ETCCGKTEERQHN 136

Query: 201 WREELTDASRLSG 213
           WR  LTDA+ + G
Sbjct: 137 WRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q3URU2|PEG3_MOUSE Paternally-expressed gene 3 protein OS=Mus musculus GN=Peg3 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 27/82 (32%)

Query: 6    PHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSS 65
            PH    HG   H+   HG   H    HG   HG   H    HG   H             
Sbjct: 987  PHDDKPHGQEPHDDKPHGQEPHDDKPHGQEPHGDEPHGQEPHGDEPHDKEPIDQEMRSEE 1046

Query: 66   AHELSAHGLSAHRKSAHGNNDV 87
             H   +HG   H + +HG   V
Sbjct: 1047 PHSEESHGDEPHGEESHGQEKV 1068

Induces apoptosis in cooperation with SIAH1A. Acts as a mediator between p53/TP53 and BAX in a neuronal death pathway that is activated by DNA damage. Acts synergistically with TRAF2 and inhibits TNF induced apoptosis through activation of NF-kappa-B. Plays a role in regulating maternal behavior and offspring growth.

Mus musculus (taxid: 10090)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 13/195 (6%)

Query: 16  AHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAH-GLFSHGLSAHGSSAHELSAHGL 74
             E +  GSS   S +     +G+++  F     S    LFS+  S+       L  + +
Sbjct: 305 VQEGTEEGSSPRASVSD----NGNASEAFVDMLRSLLVPLFSNAASSTDDHGITLPQYQV 360

Query: 75  SAH-RKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVM 133
             + R     N+ V     A+  + +  F D+ ELR        L +  E  ++ V    
Sbjct: 361 FINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY--LFRRIEESRVAVAIFS 418

Query: 134 KKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFG--GDAFVEHERWF 191
           +++  S  CL+ELV++ E   +    V+PVFY          + F G  GD     E  +
Sbjct: 419 ERYTESCWCLDELVKMKEQMEQGKLVVVPVFYR---LNATACKRFMGAFGDNLRNLEWEY 475

Query: 192 KEHPEIVQKWREELT 206
           +  PE +QKW+E L+
Sbjct: 476 RSEPERIQKWKEALS 490

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.723	0.111	0.388	2e-19
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.723	0.127	0.388	2e-18
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.565	0.085	0.440	2e-18
255564976	944	TMV resistance protein N, putative [Rici	0.542	0.127	0.442	4e-18
359493220	1481	PREDICTED: TMV resistance protein N-like	0.538	0.080	0.438	9e-18
357499339	1109	Disease resistance-like protein [Medicag	0.556	0.110	0.401	3e-17
356561376	1049	PREDICTED: TMV resistance protein N-like	0.556	0.117	0.395	7e-17
255561496	876	TMV resistance protein N, putative [Rici	0.542	0.136	0.418	1e-16
302398849	184	HD domain class transcription factor [Ma	0.552	0.663	0.430	2e-16
124359513	1230	TIR [Medicago truncatula]	0.701	0.126	0.333	2e-16

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 59  LSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDL 118
           +++  + AH+       + R     NN       ALCRK +KTFIDDR L +  EI P L
Sbjct: 1   MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDR-LERGGEITPAL 59

Query: 119 LKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVF 178
           LK  E  +I V+   K +  S  C++ELV+I E K   GQ V+PVFYH    ++  Q   
Sbjct: 60  LKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGS 119

Query: 179 FGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS 220
           F G+AF E E+ FK   + V +WR +LT+A+ +SG+   +TS
Sbjct: 120 F-GNAFAELEKNFKGKMDKVPRWRADLTNAASISGWDSQVTS 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 59  LSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDL 118
           +++  S AH+       + R     NN       ALCRK +KTFIDD  L + EEI P L
Sbjct: 1   MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDD-GLERGEEITPAL 59

Query: 119 LKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVF 178
           LK  E  +I V+   K +  S  C++ELV+I E K   GQ V+PVFYH    ++  Q   
Sbjct: 60  LKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGS 119

Query: 179 FGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS 220
           F G+AF E E  FK   + V +WR ++T A+ +SG+   +TS
Sbjct: 120 F-GNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQVTS 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           ALCRK +KTFIDD+ L + EEI   LL+  E  +I VI   + +  S  C++ELV+I E 
Sbjct: 35  ALCRKQIKTFIDDK-LERGEEITGALLRTIEESRISVIIFSRNYASSPWCVDELVKILEC 93

Query: 153 KRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLS 212
           K+  GQ V+PVFYH    ++  Q   F G+AF E ER FK+  + V +WR +LT A+ +S
Sbjct: 94  KKAYGQIVLPVFYHVDPSDVDQQTGSF-GNAFAELERNFKQKMDKVPRWRADLTSAANIS 152

Query: 213 GFRFTIT 219
           G+   +T
Sbjct: 153 GWDSQVT 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           AL +K +K F+DD+ L + EEI   L+K  E   + VI   + + FS  CL+ELV+I E 
Sbjct: 38  ALHQKQIKAFVDDK-LSRGEEISAALVKVIEESMVSVIIFSENYAFSPWCLDELVKILEC 96

Query: 153 KRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLS 212
           K+  GQ V+PVFYH    ++  Q+  FG  AF+EHE+ FKE  + +QKWR  LT+A+ +S
Sbjct: 97  KKTVGQIVLPVFYHVDPSDVAEQKGGFGA-AFIEHEKCFKERIDKLQKWRAALTEAANIS 155

Query: 213 GF 214
           G+
Sbjct: 156 GW 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493220|ref|XP_002264441.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 2/121 (1%)

Query: 94  LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
           L R  ++TF DD EL +   I  DLL+  E  +I++I   K +  S  CLNELV+I E  
Sbjct: 43  LVRHGIQTFRDDEELEKGGVIASDLLRAIEESRIFIIIFSKNYADSRWCLNELVKITECA 102

Query: 154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHER-WFKEHPEIVQKWREELTDASRLS 212
           R+ G  V+P+FYH    +++ Q   F GDAF  HER   +E  E +QKWR  LT+A+ LS
Sbjct: 103 RQKGSMVLPIFYHVDPSDIRKQSGIF-GDAFTHHERDADEEKKETIQKWRTALTEAANLS 161

Query: 213 G 213
           G
Sbjct: 162 G 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499339|ref|XP_003619958.1| Disease resistance-like protein [Medicago truncatula] gi|355494973|gb|AES76176.1| Disease resistance-like protein [Medicago truncatula]

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 4/127 (3%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           ALC K ++TFIDD+EL++ +EI P LLK  E  +I +I   + +  S+ CL+ELV I  Y
Sbjct: 42  ALCDKGIRTFIDDKELQRGDEITPSLLKSIEHSRIAIIVFSENYATSSFCLDELVHIINY 101

Query: 153 KRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWF---KEHPEIVQKWREELTDAS 209
            ++ G+ V+PVFY      ++ Q   + G+A  E E  F   KE+ + +QKW+  L    
Sbjct: 102 FKEKGRLVLPVFYGVEPSHVRHQNNKY-GEALTEFEEMFQNNKENMDRLQKWKIALNQVG 160

Query: 210 RLSGFRF 216
            LSGF F
Sbjct: 161 NLSGFHF 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561376|ref|XP_003548958.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           ALC + + TFIDD EL++ EEI P L+K  E  +I +    K +  ST CL+ELV I   
Sbjct: 34  ALCDRGIHTFIDDEELQRGEEITPLLVKAIEGSRIAIPVFSKNYASSTFCLDELVHILAC 93

Query: 153 KRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLS 212
            ++ G  V+PVFY     +++ QR  +  DA   H+  F +  E +QKWR  L+ A+ L+
Sbjct: 94  VKEKGTLVLPVFYEVDPSDVRHQRGSY-KDALNSHKERFNDDQEKLQKWRNSLSQAANLA 152

Query: 213 GFRF 216
           G+ F
Sbjct: 153 GYHF 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
           AL +K + TF+D +E+++ EEI P + K  +  K+ VI   +K+ FS  CL+EL +I E 
Sbjct: 33  ALNKKKIFTFMD-KEIKRGEEISPSIAKAIKGSKLSVIIFSEKYAFSKWCLDELTKILEC 91

Query: 153 KRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLS 212
           K+ NGQ VIPVFY      ++ QR  F   AF +HE   KE  E V+ WR  L +A  +S
Sbjct: 92  KKMNGQIVIPVFYRVDPVHVRNQRGSFAC-AFAKHEETLKERMEKVESWRSALNEAGSIS 150

Query: 213 GF 214
           G+
Sbjct: 151 GW 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398849|gb|ADL36719.1| HD domain class transcription factor [Malus x domestica]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 94  LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
           L +K  KTFIDD  L++ EEI   LLK  E  +I V+   + +  S  CL+ELV IF  K
Sbjct: 46  LVQKGFKTFIDDEALKRGEEISSALLKAIEQSRISVVVFSENYASSRWCLDELVHIFHCK 105

Query: 154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
            +  Q V PVFY     +++ QR  FG  A V+HE   K++ + V +WRE LT A+ LSG
Sbjct: 106 EQLQQMVFPVFYKVDPSDVRNQRKSFGK-ALVDHESKLKDNMDKVLRWRETLTKAANLSG 164

Query: 214 FRF 216
           + F
Sbjct: 165 WSF 167

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359513|gb|ABN05946.1| TIR [Medicago truncatula]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 4/159 (2%)

Query: 59  LSAHGSSAHELSAHGLSAHRKSAHGNNDVRLNSH---ALCRKSMKTFIDDRELRQVEEIR 115
           + A  SS  E++++           +   +  SH   AL +  +KTFIDD EL++ +EI 
Sbjct: 109 IGASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGLKTFIDDNELKKGDEIS 168

Query: 116 PDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQ 175
             L+K  E     ++ + + +  S  CLNELV+I E K+ NGQ VIP+FY      ++ Q
Sbjct: 169 SALIKAIEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRYQ 228

Query: 176 RVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGF 214
              + G AF ++E+  +   + +QKW++ LT+ S+LSG+
Sbjct: 229 IGSY-GQAFAKYEKNLRHKKDNLQKWKDALTEVSKLSGW 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.529	0.664	0.35	1.8e-14
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.556	0.392	0.386	3.7e-13
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.524	0.101	0.367	4.9e-13
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.533	0.429	0.341	7.2e-13
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.529	0.307	0.341	1.9e-12
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.524	0.312	0.338	5e-12
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.565	0.104	0.338	1.6e-11
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.520	0.102	0.361	1.9e-11
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.529	0.308	0.316	2.4e-11
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.529	0.307	0.341	5.1e-11

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 42/120 (35%), Positives = 69/120 (57%)

Query:    94 LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
             L R+S++TF DD+EL   +   P+L    EV +  V+ V + +  S+ CL+ELV I +++
Sbjct:    32 LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91

Query:   154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
             +K    V+P+FY      ++ Q      + F +H    +E PE V KWR+ LT+ ++LSG
Sbjct:    92 KKGSITVMPIFYGVEPNHVRWQTGVLA-EQFKKHAS--REDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 53/137 (38%), Positives = 74/137 (54%)

Query:    84 NNDVRLN--SHALC----RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHR 137
             + D R N  SH LC    RK +KTF+ D EL   +E   + LK  EV KI VI   +   
Sbjct:    17 SKDTRDNFVSH-LCGCLRRKRIKTFLYD-EL-PADERYEESLKAIEVSKISVIVFSENFG 73

Query:   138 FSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEI 197
              S  CL+E+V I + K K GQ VIPV YH    +++ Q   FG DAF +     ++  E 
Sbjct:    74 DSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFG-DAFAKR----RDKAEQ 128

Query:   198 VQKWREELTDASRLSGF 214
             +Q+W++  T+A  L G+
Sbjct:   129 LQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 185 (70.2 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 43/117 (36%), Positives = 63/117 (53%)

Query:    97 KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156
             K +KTF DD+ L     I  +L K  E  +  ++   + +  S  CLNELV+I E K + 
Sbjct:    38 KGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRF 97

Query:   157 GQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
              Q VIP+FY      ++ Q+  F   AF EHE  +K+  E +Q+WR  L +A+ L G
Sbjct:    98 KQTVIPIFYDVDPSHVRNQKESFA-KAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 41/120 (34%), Positives = 64/120 (53%)

Query:    94 LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
             L R+ ++TF DD+EL     I P+L +  E  K  V+ V   +  S  CL+ELV+I +++
Sbjct:    32 LVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFE 91

Query:   154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
              K    V+P+FY      L+ Q +    + F +HE   ++H E V  WR  LT  + +SG
Sbjct:    92 NKGSITVMPIFYGVDPCHLRRQ-IGDVAEQFKKHEAREEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 41/120 (34%), Positives = 69/120 (57%)

Query:    94 LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
             L R+S++TF DD+EL   + I  +L +  EV +  V+ V + +  S+ CL+ELV I +++
Sbjct:    32 LVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVVVSETYAASSWCLDELVTIMDFE 91

Query:   154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
             +K    V+P+FY      ++ Q      + F +H    +E  E V KWR+ LT+ ++LSG
Sbjct:    92 KKGSITVMPIFYGVEPNHVRWQTGVLA-EQFKKHGS--REDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 40/118 (33%), Positives = 63/118 (53%)

Query:    96 RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRK 155
             R+ ++TF DD+EL     I P+L +  E  K  V+ V   +  S  CL+ELV+I +++ K
Sbjct:    34 RRKIRTFKDDKELENGRRISPELKRAIEESKFAVVVVSVNYAASPWCLDELVKIMDFENK 93

Query:   156 NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
                 V+P+FY      L+ Q +    + F +HE   ++H E V  WR  LT  + +SG
Sbjct:    94 GSITVMPIFYGVDPCHLRRQ-IGDVAEQFKKHEAREEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 46/136 (33%), Positives = 74/136 (54%)

Query:    86 DVRLN--SH---ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
             DVR N  SH   +L R  + TF+DD EL++ E I P+LL   E  KI ++ + K +  S 
Sbjct:    27 DVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIVVLTKDYASSA 86

Query:   141 LCLNELVEIFEYKRKN-GQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHP-EIV 198
              CL+ELV I +  + N    V P+F +    +++ Q+  +   +F +H+     HP   +
Sbjct:    87 WCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYA-KSFSKHKN---SHPLNKL 142

Query:   199 QKWREELTDASRLSGF 214
             + WRE LT  + +SG+
Sbjct:   143 KDWREALTKVANISGW 158

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 43/119 (36%), Positives = 68/119 (57%)

Query:    96 RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRK 155
             RKS+ TF  D E+ + + I P+L++  +  +I VI   K +  S+ CLNEL+EI    + 
Sbjct:    38 RKSIITF-KDNEMERSQSIAPELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKY 96

Query:   156 NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGF 214
              GQ VIPVFY+     L+ Q   FG +AF +  +   +  E+  +W++ LTD S + G+
Sbjct:    97 LGQQVIPVFYYLDPSHLRKQSGEFG-EAFKKTCQ--NQTEEVKNQWKQALTDVSNILGY 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 38/120 (31%), Positives = 66/120 (55%)

Query:    94 LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
             L R++++TF DD+EL+    I P+L++  E  +  V+ V   +  S  CL ELV+I +++
Sbjct:    34 LIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAVVVVSVNYAASRWCLEELVKIMDFE 93

Query:   154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
                   V+P+FY      ++ Q +    + F +HE   +E  E V  WR+ LT+ + +SG
Sbjct:    94 NMGSLKVMPIFYGVDPCHVRRQ-IGEVAEQFKKHEG--REDHEKVLSWRQALTNLASISG 150

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 41/120 (34%), Positives = 63/120 (52%)

Query:    94 LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
             L    ++TF DD EL+    I  DLL   E  KI V+ + K +  S  CL ELV I + +
Sbjct:    38 LIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAVVIISKNYSASPWCLQELVMIMDVE 97

Query:   154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
             +K    V+P+FY+     ++ Q +      F +HE   +E+ E V  WR+ LT+ + +SG
Sbjct:    98 KKGSIIVMPIFYNVEPAHVRRQ-IEQVAKQFRKHEG--RENYETVVSWRQALTNLASISG 154

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190624 tir-nbs-lrr resistance protein (1436 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-14
pfam01582	135	pfam01582, TIR, TIR domain	1e-11
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-08

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 70.7 bits (173), Expect = 4e-14
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 9/134 (6%)

Query: 86  DVRLN--SH---ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
           DVR+   SH    L RK +  F  D E+ + + + P+L +     +I V+   K +  S+
Sbjct: 23  DVRITFLSHFLKELDRKLIIAF-KDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSS 81

Query: 141 LCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQK 200
            CLNEL+EI   K + GQ VIPVFY      ++ Q   F G+AF +  +   +  +   +
Sbjct: 82  WCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDF-GEAFEKTCQ--NKTEDEKIQ 138

Query: 201 WREELTDASRLSGF 214
           W++ LTD + + G+
Sbjct: 139 WKQALTDVANILGY 152

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
            L  K +K  IDDR+    E I  +L +  E  +  ++     +  S  CL+ELVEI + 
Sbjct: 21  ELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKC 80

Query: 153 KRK--NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWR 202
             +    + ++P+FY     +++ Q   F G AF++  +W  +  + ++ W+
Sbjct: 81  ALEGGGKKVILPIFYKVDPSDVRPQSGKF-GKAFLKTLKWSGDKEDKIRFWK 131

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 82  HGNNDVRLNS-----HALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKH 136
            G  DVR          L    +  FIDD E         ++ +  E  +I  I V+  +
Sbjct: 9   SGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPG--GGDLEEIDEAIEKSRI-AIVVLSPN 65

Query: 137 RF-STLCLNELVEIFE-YKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEH 194
              S  CL+ELV   E    + G  VIP+FY     +++ Q   F       + +W ++ 
Sbjct: 66  YAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPED- 124

Query: 195 PEIVQKWREELTDAS 209
            E  Q W++ L    
Sbjct: 125 -EKEQFWKKALYAVP 138

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.92
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.88
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.6
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.03
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	97.98
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	96.36
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	95.42
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	89.07
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	81.54

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=5.1e-44  Score=302.80  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=120.9

Q ss_pred             ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN  144 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd  144 (221)
                      ++.+.+|||||||||+|||++     |++|+++||+||+|++++++|+.|.++|.+||++|+++|+|||++|++|+|||+
T Consensus        21 ~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLd  100 (187)
T PLN03194         21 SSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLH  100 (187)
T ss_pred             CCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHH
Confidence            455678999999999999987     999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCcEEEeEEEeccccccccc-ccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecC
Q 042099          145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQ-RVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTI  218 (221)
Q Consensus       145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q-~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~  218 (221)
                      ||++|++++    ++||||||+|+|+|||+| .|.+              +.+++++||+||++|++++||+++.
T Consensus       101 EL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~--------------~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194        101 ELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC--------------PDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHHHHHcC----CEEEEEEecCCHHHhhccccCCC--------------CHHHHHHHHHHHHHHhccccccCCC
Confidence            999999874    489999999999999997 4433              4789999999999999999998864

>PLN03210 Resistant to P

Probab=100.00  E-value=3.6e-44  Score=368.80  Aligned_cols=147  Identities=29%  Similarity=0.421  Sum_probs=139.9

Q ss_pred             ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN  144 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd  144 (221)
                      +.+.|+|||||||||+|||++     |++|.++||++|+|+ ++++|+.|.++|++||++||++|||||++||+|+|||+
T Consensus         7 ~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~   85 (1153)
T PLN03210          7 SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN   85 (1153)
T ss_pred             CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence            557899999999999999998     999999999999987 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecCCC
Q 042099          145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS  220 (221)
Q Consensus       145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~~s  220 (221)
                      ||++|++|+++.+++|+||||+|+|+|||+|+|.| |++|.+++++.  +.+++++||+||++|++++||++++++
T Consensus        86 el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f-~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDF-GEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             HHHHHHHhhhhcCceEEEEEecccHHHHhhccchH-HHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            99999999999999999999999999999999999 99999998765  478999999999999999999998754

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.92  E-value=2.3e-26  Score=184.34  Aligned_cols=128  Identities=20%  Similarity=0.299  Sum_probs=112.3

Q ss_pred             EeccCCc-cchhcc----HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHH
Q 042099           78 RKSAHGN-NDVRLN----SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIF  150 (221)
Q Consensus        78 VFIS~rg-~Dtr~~----~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~  150 (221)
                      |||||++ +|..+.    +.+|+++  |+++|++++++.+|..+.++|.++|++||+.|+|||++|+.|+||++||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999 555444    8899999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCC--cEEEeEEEeccccccc-ccccccchhHHHHHHHhhcCC--hHHHHHHHHHHH
Q 042099          151 EYKRKNG--QFVIPVFYHGTVYELQ-GQRVFFGGDAFVEHERWFKEH--PEIVQKWREELT  206 (221)
Q Consensus       151 e~~~~~~--~~VlPIFY~V~PsdVr-~q~g~f~g~aF~~~~~~~~~~--~ekv~~Wr~AL~  206 (221)
                      ++..+.+  .+||||||+|.|++|+ .|++.| ...|..+.+....+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRF-LLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHH-HHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHH-HHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9887654  8999999999999999 799999 89988887776543  578999999985

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.88  E-value=2.2e-22  Score=158.59  Aligned_cols=132  Identities=22%  Similarity=0.281  Sum_probs=108.6

Q ss_pred             ceeEeccCCc-cchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHH
Q 042099           75 SAHRKSAHGN-NDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVE  148 (221)
Q Consensus        75 ~ydVFIS~rg-~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~  148 (221)
                      .|||||||++ +|+...     ...|...|+.+|.|+..+. +... .+|.++|++|++.|+|+|++|..|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~-~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPG-GGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccc-cchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999999 444443     6677888999999976333 3333 399999999999999999999999999999999


Q ss_pred             HHHhhhc-CCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 042099          149 IFEYKRK-NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASR  210 (221)
Q Consensus       149 I~e~~~~-~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~  210 (221)
                      +++...+ ..+.||||+|+..|+++..+.+.+ ...|.....++.++..+ +.|++++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l-~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKF-RKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHH-HHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            9987754 668999999999999999999999 88888776666544444 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.60  E-value=6.1e-16  Score=116.69  Aligned_cols=84  Identities=18%  Similarity=0.271  Sum_probs=71.1

Q ss_pred             EeccCCccchhcc---HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhh
Q 042099           78 RKSAHGNNDVRLN---SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKR  154 (221)
Q Consensus        78 VFIS~rg~Dtr~~---~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~  154 (221)
                      |||||+.+|....   ...|++.|+++|+|. ++..|+.+.++|.++|++|+..|+++|++|..|+||..|+..+.+   
T Consensus         1 VFIS~~~~D~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~---   76 (102)
T PF13676_consen    1 VFISYSSEDREFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK---   76 (102)
T ss_dssp             EEEEEEGGGCCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC---
T ss_pred             eEEEecCCcHHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH---
Confidence            8999999997665   889999999999997 899999999999999999999999999999999999999988843   


Q ss_pred             cCCcEEEeEEEe
Q 042099          155 KNGQFVIPVFYH  166 (221)
Q Consensus       155 ~~~~~VlPIFY~  166 (221)
                       .+..|+||..+
T Consensus        77 -~~~~iipv~~~   87 (102)
T PF13676_consen   77 -RGKPIIPVRLD   87 (102)
T ss_dssp             -TSESEEEEECS
T ss_pred             -CCCEEEEEEEC
Confidence             45689999843

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.03  E-value=9.5e-06  Score=78.33  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CcceeEeccCCccchhcc----HH-HHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc--------c
Q 042099           73 GLSAHRKSAHGNNDVRLN----SH-ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF--------S  139 (221)
Q Consensus        73 ~~~ydVFIS~rg~Dtr~~----~~-aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~--------S  139 (221)
                      +...|||||||.. +.+.    .+ .|.-+|+++|+|-+.|..|+- .+.|++.|...+.+|.|++||-..        -
T Consensus       610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            3459999999943 3322    22 345589999999888988874 568899999999999999998543        3


Q ss_pred             HHhHHHHHHHHHhhhcCCcEEEeEEEe---------cccccccc
Q 042099          140 TLCLNELVEIFEYKRKNGQFVIPVFYH---------GTVYELQG  174 (221)
Q Consensus       140 ~WCLdEL~~I~e~~~~~~~~VlPIFY~---------V~PsdVr~  174 (221)
                      .|.-.||.-.+++.    .-|||||=.         +-|.|+|.
T Consensus       688 DWVHKEl~~Afe~~----KNIiPI~D~aFE~Pt~ed~iPnDirm  727 (832)
T KOG3678|consen  688 DWVHKELKCAFEHQ----KNIIPIFDTAFEFPTKEDQIPNDIRM  727 (832)
T ss_pred             HHHHHHHHHHHHhc----CCeeeeecccccCCCchhcCcHHHHH
Confidence            56677777777665    468999843         55666654

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=97.98  E-value=1.4e-05  Score=63.55  Aligned_cols=86  Identities=12%  Similarity=0.078  Sum_probs=42.6

Q ss_pred             eeEeccCCccchhcc----HHHHhh-------CCCe----------EEeeCCcccCcccchHHHHhhhhhceEEEEEEec
Q 042099           76 AHRKSAHGNNDVRLN----SHALCR-------KSMK----------TFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMK  134 (221)
Q Consensus        76 ydVFIS~rg~Dtr~~----~~aL~~-------kGI~----------vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSk  134 (221)
                      |.|||||...|-...    ...|..       ..+.          .+.+..+....+.|...|.++|++|.+.||+.++
T Consensus         1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~   80 (130)
T PF08937_consen    1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP   80 (130)
T ss_dssp             ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred             CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            579999999987733    222333       2221          1122223334457889999999999999999999


Q ss_pred             CccccHHhHHHHHHHHHhhhcCCcEEEeEEE
Q 042099          135 KHRFSTLCLNELVEIFEYKRKNGQFVIPVFY  165 (221)
Q Consensus       135 nYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY  165 (221)
                      +-..|+|.-.|+...++    .+..||-|..
T Consensus        81 ~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   81 NTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             T----HHHHHHHHHHTT----T---EEEEET
T ss_pred             CcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            99999999999998876    3456666653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=96.36  E-value=0.016  Score=46.39  Aligned_cols=59  Identities=8%  Similarity=0.044  Sum_probs=46.0

Q ss_pred             eEeccCCccchhcc------HHHHhhC-CCeEEeeCCcccC--cccchHHHHhhhhhceEEEEEEecC
Q 042099           77 HRKSAHGNNDVRLN------SHALCRK-SMKTFIDDRELRQ--VEEIRPDLLKGFEVVKIWVITVMKK  135 (221)
Q Consensus        77 dVFIS~rg~Dtr~~------~~aL~~k-GI~vFiDd~el~~--G~~I~~~I~~aIe~SrisIVVfSkn  135 (221)
                      .|||+|+.......      ...|++. ||.|.+|.-+...  +.....=+.+.|+++...|||.|+.
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~   69 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPG   69 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccc
Confidence            59999997554442      6778888 9999999765533  5566667778899999999999943

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=95.42  E-value=0.033  Score=44.84  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=55.6

Q ss_pred             eEeccCCccch--hcc-HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecC-ccc------------cH
Q 042099           77 HRKSAHGNNDV--RLN-SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKK-HRF------------ST  140 (221)
Q Consensus        77 dVFIS~rg~Dt--r~~-~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSkn-Ya~------------S~  140 (221)
                      .|||.|. +|.  +.. ...|++.|+.+.+-.+....|..|.+.|.+.++++..+|++++|+ ...            -.
T Consensus         1 kVFIvhg-~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR~   79 (125)
T PF10137_consen    1 KVFIVHG-RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRARQ   79 (125)
T ss_pred             CEEEEeC-CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccccc
Confidence            4899888 444  333 556676799888877777899999999999999999999999985 221            12


Q ss_pred             HhHHHHHHHHH
Q 042099          141 LCLNELVEIFE  151 (221)
Q Consensus       141 WCLdEL~~I~e  151 (221)
                      --+.||...+-
T Consensus        80 NVifE~G~f~g   90 (125)
T PF10137_consen   80 NVIFELGLFIG   90 (125)
T ss_pred             ceeehhhHHHh
Confidence            35667777664

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=89.07  E-value=1  Score=33.08  Aligned_cols=64  Identities=9%  Similarity=-0.037  Sum_probs=46.0

Q ss_pred             eEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccH
Q 042099           77 HRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST  140 (221)
Q Consensus        77 dVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~  140 (221)
                      .||||-.-.|...-    .+.|.+.|..+..-+.-...+....+.+++.|++|.+.|.++-.+|-..+
T Consensus         1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            48999888886433    67777777754332221223566677889999999999999999997643

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=81.54  E-value=1.4  Score=40.13  Aligned_cols=115  Identities=11%  Similarity=-0.046  Sum_probs=74.4

Q ss_pred             cCCcceeEeccCCccchhcc---HHHHh--hCCCeEEeeCCc---ccCcccchHHHHhhh--hhceEEEEEEecCccccH
Q 042099           71 AHGLSAHRKSAHGNNDVRLN---SHALC--RKSMKTFIDDRE---LRQVEEIRPDLLKGF--EVVKIWVITVMKKHRFST  140 (221)
Q Consensus        71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~--~kGI~vFiDd~e---l~~G~~I~~~I~~aI--e~SrisIVVfSknYa~S~  140 (221)
                      ..+.+||+=+||.|+-.+-.   .+.++  ...+..|.|...   |-+++ + ..++.-+  +.|+..+|...+||..-.
T Consensus       173 ~~~~~~DiG~SFaGEAR~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L-~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         173 SSEKPVDSGISFAGEARNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-L-VSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             ccccccceeeEeehhhhhHHHHHHHhhhcccCCceeeeechhhccccCcc-H-HHhcccccCceEEEEEEEeCCceEEee
Confidence            55678999999999876555   55555  446788998642   33333 2 2334434  248888999999999999


Q ss_pred             HhHHHHHHHHHhhhcCCcEEEeEEE-ecccccc---cccccccchhHHHHHHH
Q 042099          141 LCLNELVEIFEYKRKNGQFVIPVFY-HGTVYEL---QGQRVFFGGDAFVEHER  189 (221)
Q Consensus       141 WCLdEL~~I~e~~~~~~~~VlPIFY-~V~PsdV---r~q~g~f~g~aF~~~~~  189 (221)
                      ||-.|-..|-+-.  .-+...||.| +++.+.+   ..-.|.||.+.|...+.
T Consensus       251 ~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~dG~~~T~G~iD~~~~~~~e~  301 (329)
T COG4916         251 TCHIEGLEGRLNP--ILDTGFRIKYLYADNIAIDGGKQTPGHFDIDSPIELED  301 (329)
T ss_pred             eeccchhhccccc--cccccceEEEEecCCccccccccCCceeecCCcchhhh
Confidence            9999887765422  2245677766 4555544   33456775566654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-14
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		5e-08

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 94  LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153
           L R+S++TF DD+EL   +   P+L    EV +  V+ V + +  S+ CL+ELV I +++
Sbjct: 32  LVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91
Query: 154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
           +K    V+P+FY      ++ Q      + F +H    +E PE V KWR+ LT+ ++LSG
Sbjct: 92  KKGSITVMPIFYGVEPNHVRWQTGVL-AEQFKKHAS--REDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 92  HALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE 151
            +L R  + TF DD EL + +EI P+LL+  +  KI+V  +   +  S  CL EL EI  
Sbjct: 57  QSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVR 116
Query: 152 YKRKNG-QFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASR 210
            + ++  + ++P+FY     +++ Q   +   AF +H   F    + +Q W++ L     
Sbjct: 117 RQEEDPRRIILPIFYMVDPSDVRHQTGCYKK-AFRKHANKF--DGQTIQNWKDALKKVGD 173
Query: 211 LSGF 214
           L G+
Sbjct: 174 LKGW 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	6e-35
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	4e-31
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  121 bits (305), Expect = 6e-35
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 86  DVRLN--SH---ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
           D R N  S     L R+S++TF DD+EL   +   P+L    EV +  V+ V + +  S+
Sbjct: 19  DTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78

Query: 141 LCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQK 200
            CL+ELV I ++++K    V+P+FY      ++ Q      + F +H    +E PE V K
Sbjct: 79  WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVL-AEQFKKHAS--REDPEKVLK 135

Query: 201 WREELTDASRLSGF 214
           WR+ LT+ ++LSG 
Sbjct: 136 WRQALTNFAQLSGD 149

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  112 bits (282), Expect = 4e-31
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 86  DVRLN--SH---ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
           D R         +L R  + TF DD EL + +EI P+LL+  +  KI+V  +   +  S 
Sbjct: 46  DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105

Query: 141 LCLNELVEIFEYKRKNG-QFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQ 199
            CL EL EI   + ++  + ++P+FY     +++ Q   +   AF +H   F    + +Q
Sbjct: 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCY-KKAFRKHANKFDG--QTIQ 162

Query: 200 KWREELTDASRLSGFRF 216
            W++ L     L G+  
Sbjct: 163 NWKDALKKVGDLKGWHI 179

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 92.7 bits (231), Expect = 4e-24
 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 92  HALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE 151
           H L     + + DD  LR  + +R  + KG    +  ++ +            EL  +F+
Sbjct: 41  HTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQ 100

Query: 152 YKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREEL 205
            +      ++P+++  +  E+         D    +        + +      +
Sbjct: 101 LESSGRSRILPIWHKVSKDEVASFSPTM-ADKLAFNTSTKSV--DEIVADLMAI 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 28/154 (18%)

Query: 82  HGNNDVRLNSHALCRKSM-----KTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKH 136
           H + D     H    K +       F+D+ + + V+++   +L   E+  I    +M K 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI----IMSKD 59

Query: 137 R-------FSTLCL--NELVEIF--EYKRKNGQFVIPVFYH--------GTVYELQGQRV 177
                   F TL     E+V+ F  E  R N +F++               +Y  Q  R+
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 178 FFGGDAFVEHERWFKEHPEIVQKWREELTDASRL 211
           +     F ++     +    +++   EL  A  +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.97
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.94
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.89
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.88
2js7_A	160	Myeloid differentiation primary response protein M	99.88
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.13
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	95.72

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6.9e-52  Score=347.83  Aligned_cols=145  Identities=32%  Similarity=0.482  Sum_probs=123.0

Q ss_pred             ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN  144 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd  144 (221)
                      ++++++|||||||||+|+|++     +++|+++||++|+|++++++|+.|.++|.+||++|+++|||||+||++|+|||+
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            567899999999999999876     999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeec
Q 042099          145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFT  217 (221)
Q Consensus       145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~  217 (221)
                      ||++|++|+++.+++||||||+|+|++||+|+|.| |++|.+|+++  .+.+++++||.||++|++++||++.
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~f-g~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVL-AEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHH-HHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcH-HHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999999999999999999999999999999999 9999999998  4789999999999999999999985

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.3e-51  Score=351.59  Aligned_cols=148  Identities=26%  Similarity=0.424  Sum_probs=138.2

Q ss_pred             ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN  144 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd  144 (221)
                      +..+++|||||||||+|+|++     +++|+++||++|+|+++|++|+.|.++|++||++||++|||||+||++|+|||+
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            556799999999999999986     999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc-CCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecCCC
Q 042099          145 ELVEIFEYKRK-NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS  220 (221)
Q Consensus       145 EL~~I~e~~~~-~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~~s  220 (221)
                      ||++|++|+++ .+++||||||+|+|++||+|+|.| |++|.+|++++  +++++++||.||++||+++||++++++
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~f-g~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~  183 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCY-KKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND  183 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTH-HHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccH-HHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCC
Confidence            99999999875 689999999999999999999999 99999999988  478999999999999999999998864

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.97  E-value=5.1e-33  Score=225.84  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=114.1

Q ss_pred             CCcceeEeccCCccchhc-c---HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHH
Q 042099           72 HGLSAHRKSAHGNNDVRL-N---SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELV  147 (221)
Q Consensus        72 ~~~~ydVFIS~rg~Dtr~-~---~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~  147 (221)
                      .+++|||||||+++|... .   +.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|+|++|++|.||++||.
T Consensus        17 ~~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~   96 (154)
T 3h16_A           17 SAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD   96 (154)
T ss_dssp             -CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred             CCCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence            468899999999999532 3   899999999999999899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHh
Q 042099          148 EIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDA  208 (221)
Q Consensus       148 ~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~v  208 (221)
                      .|+++.++.+++||||||+|+|++||+|+|.| +++|......     +.+.++-+.|.++
T Consensus        97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~-~~~~~~~~~~-----~~~~~ia~~l~~l  151 (154)
T 3h16_A           97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTM-ADKLAFNTST-----KSVDEIVADLMAI  151 (154)
T ss_dssp             HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCC-CSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEEecCCHHHHhhCCccH-HHHHhhhcCc-----ccHHHHHHHHHHH
Confidence            99998877888999999999999999999999 9888654332     3355555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.94  E-value=1.1e-28  Score=200.24  Aligned_cols=131  Identities=12%  Similarity=0.098  Sum_probs=91.4

Q ss_pred             cCCcceeEeccCCccchhcc---HHHHhh--CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHH
Q 042099           71 AHGLSAHRKSAHGNNDVRLN---SHALCR--KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNE  145 (221)
Q Consensus        71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~~--kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdE  145 (221)
                      ..+..|||||||+++|+++.   +.+|++  .|+++|+|++++.+|+.|.++|.++|++||+.|+|||+||++|.||+.|
T Consensus         6 r~~k~YDvFISy~~~D~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~E   85 (146)
T 3ub2_A            6 RWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ   85 (146)
T ss_dssp             TTSSSEEEEEECCGGGHHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHH
T ss_pred             CCCCcceEEEeCChhhHHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHH
Confidence            34578999999999999988   888998  5999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCcEEEeEEEecccccc----cccccccchhHHHHHHHhhcCChHHHHHHHHHH
Q 042099          146 LVEIFEYKRKNGQFVIPVFYHGTVYEL----QGQRVFFGGDAFVEHERWFKEHPEIVQKWREEL  205 (221)
Q Consensus       146 L~~I~e~~~~~~~~VlPIFY~V~PsdV----r~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL  205 (221)
                      |..++.+.......||||||+|++.++    |....    ..+....+.|....+.|.+|+.||
T Consensus        86 l~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~----id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           86 MLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY----VDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCC----EETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeee----eeccChHhhHHHHHHHHHHHHHhc
Confidence            999998764334477899999985554    44332    122223333433467899998876

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.89  E-value=1.6e-24  Score=175.61  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=89.2

Q ss_pred             CCcceeEeccCCccchhcc----HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHH
Q 042099           72 HGLSAHRKSAHGNNDVRLN----SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNE  145 (221)
Q Consensus        72 ~~~~ydVFIS~rg~Dtr~~----~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdE  145 (221)
                      .++.|||||||+++|+.+.    +.+|+++  |+++|+|++++.+|+.|.++|.++|++|++.|+|||++|+.|.||++|
T Consensus         2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            4678999999999999776    6789876  999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hhhcCCcEEEeEEEe-cccccc
Q 042099          146 LVEIFE-YKRKNGQFVIPVFYH-GTVYEL  172 (221)
Q Consensus       146 L~~I~e-~~~~~~~~VlPIFY~-V~PsdV  172 (221)
                      |..++. +.++.++.||||||+ +++..+
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            999985 445567789999995 555444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.88  E-value=6e-24  Score=177.60  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             ccCCcceeEeccCCccchhcc----HHHHhh--CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN----SHALCR--KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCL  143 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~----~~aL~~--kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCL  143 (221)
                      ...++.|||||||+++|+.+.    +..|++  +|+++|+|++++.+|+.|.++|.++|++|++.|+|||++|++|.||+
T Consensus        30 ~~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CCCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             cCCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            456789999999999999766    788998  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hcCCcEEEeEEEec
Q 042099          144 NELVEIFEYK-RKNGQFVIPVFYHG  167 (221)
Q Consensus       144 dEL~~I~e~~-~~~~~~VlPIFY~V  167 (221)
                      +||..++.+. ++.+++||||||+-
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~  134 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEP  134 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecC
Confidence            9999999644 55677899999963

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.88  E-value=1.6e-23  Score=171.99  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=88.2

Q ss_pred             cCCcceeEeccCCccchhcc---HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhh-hceEEEEEEecCccccHHhHH
Q 042099           71 AHGLSAHRKSAHGNNDVRLN---SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFE-VVKIWVITVMKKHRFSTLCLN  144 (221)
Q Consensus        71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe-~SrisIVVfSknYa~S~WCLd  144 (221)
                      ..++.|||||||+++|..+.   +.+|+++  |+++|+|++++.+|+.|.++|.++|+ .|++.|+|+|++|++|.||++
T Consensus        12 ~~~~~yDvFISys~~D~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           12 HMPERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             CCTTCEEEEEECCGGGHHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CCCcceEEEEEcccccHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            34678999999999998777   8899884  69999999999999999999999999 799999999999999999999


Q ss_pred             HHHHHHHhh-hcCCcEEEeEEEeccc
Q 042099          145 ELVEIFEYK-RKNGQFVIPVFYHGTV  169 (221)
Q Consensus       145 EL~~I~e~~-~~~~~~VlPIFY~V~P  169 (221)
                      ||..++++. ++.+++||||||+.-+
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEcccc
Confidence            999999865 3445789999998653

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.85  E-value=2.3e-22  Score=164.88  Aligned_cols=96  Identities=16%  Similarity=0.005  Sum_probs=83.5

Q ss_pred             ceeEeccCCccchhcc--------------HH-HHh-hCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCcc-
Q 042099           75 SAHRKSAHGNNDVRLN--------------SH-ALC-RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHR-  137 (221)
Q Consensus        75 ~ydVFIS~rg~Dtr~~--------------~~-aL~-~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa-  137 (221)
                      .|||||||+++|+.+.              +. .|+ +.|+++|+|++++.+|+.|.++|.++|++||..|+|||++|+ 
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~   81 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV   81 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence            6999999999997432              33 698 799999999999999999999999999999999999999997 


Q ss_pred             ccHHhHHHHHHHHHhh-hcCCcEEEeEEEecccc
Q 042099          138 FSTLCLNELVEIFEYK-RKNGQFVIPVFYHGTVY  170 (221)
Q Consensus       138 ~S~WCLdEL~~I~e~~-~~~~~~VlPIFY~V~Ps  170 (221)
                      .|.||++||..++.+. ++.++.||||||.-.|.
T Consensus        82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           82 RRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             cChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            9999999999999876 55678999999975543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=2.6e-17  Score=161.85  Aligned_cols=101  Identities=10%  Similarity=0.018  Sum_probs=89.0

Q ss_pred             ccCCcceeEeccCCccchhcc----HHHHh-----hCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccH
Q 042099           70 SAHGLSAHRKSAHGNNDVRLN----SHALC-----RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST  140 (221)
Q Consensus        70 ~~~~~~ydVFIS~rg~Dtr~~----~~aL~-----~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~  140 (221)
                      ....++|||||||+++|..+.    ...|+     +.|+++|++++++.+|+.|.++|.++|++||..|+|+|++|+.|.
T Consensus       665 ~~~~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          665 EPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SSSCCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cccceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            345689999999999998777    56676     468999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhh-hcCCcEEEeEEEecccc
Q 042099          141 LCLNELVEIFEYK-RKNGQFVIPVFYHGTVY  170 (221)
Q Consensus       141 WCLdEL~~I~e~~-~~~~~~VlPIFY~V~Ps  170 (221)
                      ||.+|+..++.+. ++..++||||||+..|.
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            9999999988654 56678999999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.13  E-value=0.00038  Score=53.77  Aligned_cols=69  Identities=9%  Similarity=-0.027  Sum_probs=49.5

Q ss_pred             cceeEeccCCccchhcc--HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHH
Q 042099           74 LSAHRKSAHGNNDVRLN--SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE  151 (221)
Q Consensus        74 ~~ydVFIS~rg~Dtr~~--~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e  151 (221)
                      .+|.+||||..+| .+.  ...|.+.|+. |.|               +.|+.+.+.||+.+++-..|+||..|+....+
T Consensus         3 ~~~~lFISh~~~d-~~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~   65 (111)
T 1eiw_A            3 AEIRLYITEGEVE-DYRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDLARK   65 (111)
T ss_dssp             CCEEEEECCCCSH-HHHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred             ceEEEEEecccHh-HHHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence            3699999999999 433  3333333442 223               67999999999999999999999999976654


Q ss_pred             hhhcCCcEEEeE
Q 042099          152 YKRKNGQFVIPV  163 (221)
Q Consensus       152 ~~~~~~~~VlPI  163 (221)
                          .+..|+-|
T Consensus        66 ----~gkpIigV   73 (111)
T 1eiw_A           66 ----SSKPIITV   73 (111)
T ss_dssp             ----TTCCEEEE
T ss_pred             ----cCCCEEEE
Confidence                34445544

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=95.72  E-value=0.043  Score=46.04  Aligned_cols=80  Identities=15%  Similarity=0.125  Sum_probs=56.3

Q ss_pred             CCCeEEeeCCcc----cC----cccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeEEEecc
Q 042099           97 KSMKTFIDDREL----RQ----VEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGT  168 (221)
Q Consensus        97 kGI~vFiDd~el----~~----G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY~V~  168 (221)
                      ..+-.|.|--++    ..    -..|.+.|.+.|..|+..|+++|++...|.|-..|+...++   +.+..||-|+-+-+
T Consensus        44 ~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~  120 (189)
T 3hyn_A           44 DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYD  120 (189)
T ss_dssp             CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCC
T ss_pred             CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCcc
Confidence            356778884322    22    24588899999999999999999999999999999988872   23456666654422


Q ss_pred             -ccccccccccc
Q 042099          169 -VYELQGQRVFF  179 (221)
Q Consensus       169 -PsdVr~q~g~f  179 (221)
                       .+++..-.|.|
T Consensus       121 ~~~~i~~~~g~~  132 (189)
T 3hyn_A          121 KKSDIVDSNGNF  132 (189)
T ss_dssp             SGGGTBCTTSCB
T ss_pred             ccchhhhccccc
Confidence             33454444544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	0.001

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 93  ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
            L ++ M+  + +R     + I  +++   E     +  +      S  C  EL      
Sbjct: 34  NLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHN 93

Query: 153 K-RKNGQFVIPVFYH 166
              +    +I +   
Sbjct: 94  LFHEGSNSLILILLE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.8
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.79

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.1e-21  Score=152.80  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=88.7

Q ss_pred             cCCcceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHH
Q 042099           71 AHGLSAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNEL  146 (221)
Q Consensus        71 ~~~~~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL  146 (221)
                      .++++|||||||+++|..+.    ...|+++|+++|+|++++.+|+.+.++|.++|++|+..|+|+|++|..|.||..|+
T Consensus         8 ~~~~~yDvFisys~~D~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~   87 (161)
T d1fyva_           8 QRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL   87 (161)
T ss_dssp             SSCCCEEEEEECCGGGHHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHH
T ss_pred             CCCCeeEEEEecChhHHHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHH
Confidence            45689999999999998765    78899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh-hcCCcEEEeEEEeccc
Q 042099          147 VEIFEYK-RKNGQFVIPVFYHGTV  169 (221)
Q Consensus       147 ~~I~e~~-~~~~~~VlPIFY~V~P  169 (221)
                      ..+++.. +.+...+|||+++--|
T Consensus        88 ~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          88 YFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHcCCCceeEEEEecCc
Confidence            9998765 3456789999997433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-20  Score=150.49  Aligned_cols=98  Identities=13%  Similarity=0.079  Sum_probs=85.2

Q ss_pred             CCcceeEeccCCccchhcc----HHHHhh--CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHH
Q 042099           72 HGLSAHRKSAHGNNDVRLN----SHALCR--KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNE  145 (221)
Q Consensus        72 ~~~~ydVFIS~rg~Dtr~~----~~aL~~--kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdE  145 (221)
                      ++..|||||||+++|..+.    ...|++  .|+++|+|++++.+|+.+.++|.++|++|+..|+|+|++|..|.||..|
T Consensus         2 ~~~~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E   81 (149)
T d1fyxa_           2 RNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCCEEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHH
Confidence            4578999999999998764    667865  4999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-hcCCcEEEeEEEeccc
Q 042099          146 LVEIFEYK-RKNGQFVIPVFYHGTV  169 (221)
Q Consensus       146 L~~I~e~~-~~~~~~VlPIFY~V~P  169 (221)
                      +..++... +++...+|||+++..|
T Consensus        82 ~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          82 LDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHcCCceEEEEEeccCc
Confidence            98776543 4566789999997433