Citrus Sinensis ID: 042103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGVHGKRGSSSISTYLLNP
Secondary Structure (PSIPRED)
cccccEEcccccccccccccEEEEcccccEEEEEEccccccccccccccEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccEEEEccccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccEEEEccccEEEEEcccccccccccccccEEEEEEcHHHHHHccccHHHccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccEEEcccccEEEccHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mgpscciggppptrqcinfegafatgvDSVSWMANNYAKLLssqsdaphcwtsstlqlygkrnkvpqqrrWKWVCSRVLRLYLAYQKVHFRSLFilgsnyalptntpsvpcifvpqgrasiCGGWLLAASVESAALGGMALANHIADylgsggvhpeelavglyndfqpleghdtgqfpgfgvhgkrgsssistyllnp
Flexible Loop (DISEMBL)
MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLssqsdaphcWTSSTLqlygkrnkvpqqrrWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPgfgvhgkrgsssistyllnp
Low Complexity Region (SEG)
MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGVHGKRGSSSISTYLLNP
Disordered region (IsUnstruct)
*****CIG***PTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGV****************
Disordered Region (DISOPRED)
*GPSCCIGGPPPTRQCINFEGAFATGVDSVSWMA*****************TSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIAD****************YNDFQPLEGH*T*******************YLL**
Disordered Region (DISEMBL)
MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGVHGKRGSSSISTYLLNP
Disordered Region (DISPRO)
*GPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGV****GSSSISTY*LNP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGVHGKRGSSSISTYLLNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
225463946	467	PREDICTED: uncharacterized protein LOC10	0.824	0.351	0.533	4e-46
296087896	518	unnamed protein product [Vitis vinifera]	0.824	0.316	0.533	4e-46
224130614	496	predicted protein [Populus trichocarpa]	0.884	0.354	0.520	1e-45
449483109	536	PREDICTED: uncharacterized protein LOC10	0.914	0.339	0.482	4e-45
449443231	545	PREDICTED: uncharacterized protein LOC10	0.914	0.333	0.482	4e-45
115489414	497	Os12g0597400 [Oryza sativa Japonica Grou	0.859	0.344	0.491	1e-40
125537277	497	hypothetical protein OsI_38983 [Oryza sa	0.859	0.344	0.491	1e-40
108862915	456	expressed protein [Oryza sativa Japonica	0.849	0.370	0.486	1e-40
222617407	481	hypothetical protein OsJ_36748 [Oryza sa	0.859	0.355	0.491	2e-40
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.859	0.352	0.478	3e-39

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 115/178 (64%), Gaps = 14/178 (7%)

Query: 17  INFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76
           I FEGAF  GVDS+SWMANN  KLL S    PHCWT  +   +GKRNKVPQ+        
Sbjct: 277 IPFEGAFVKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKRNKVPQENIPTVTAE 336

Query: 77  RVLRLYLA------------YQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGG 124
           +V    LA             ++  +  + + G+  ALPTNTP +PCIF P GRA ICG 
Sbjct: 337 KVKEAMLAGVETALGHSAGSLKRPFYTRVQLWGA--ALPTNTPGIPCIFDPHGRAGICGD 394

Query: 125 WLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFG 182
           WL+ +S+E+A+L GMALANHIADY  SGG  P+E AVGL+N+F PLEGHD GQFPG G
Sbjct: 395 WLMGSSLEAASLSGMALANHIADYFQSGGARPDEFAVGLHNEFHPLEGHDIGQFPGLG 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 115/178 (64%), Gaps = 14/178 (7%)

Query: 17  INFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76
           I FEGAF  GVDS+SWMANN  KLL S    PHCWT  +   +GKRNKVPQ+        
Sbjct: 277 IPFEGAFVKGVDSISWMANNTKKLLHSLGSGPHCWTFFSTAAFGKRNKVPQENIPTVTAE 336

Query: 77  RVLRLYLA------------YQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGG 124
           +V    LA             ++  +  + + G+  ALPTNTP +PCIF P GRA ICG 
Sbjct: 337 KVKEAMLAGVETALGHSAGSLKRPFYTRVQLWGA--ALPTNTPGIPCIFDPHGRAGICGD 394

Query: 125 WLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFG 182
           WL+ +S+E+A+L GMALANHIADY  SGG  P+E AVGL+N+F PLEGHD GQFPG G
Sbjct: 395 WLMGSSLEAASLSGMALANHIADYFQSGGARPDEFAVGLHNEFHPLEGHDIGQFPGLG 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 123/192 (64%), Gaps = 16/192 (8%)

Query: 19  FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV 78
           FEGAF  GVDS+SWM NN AKLL S++++PHCWT  +   YGKRNKVPQ+        +V
Sbjct: 308 FEGAFVKGVDSLSWMGNNSAKLLGSKTNSPHCWTFFSTAAYGKRNKVPQENIPTATAEKV 367

Query: 79  LRLYL------------AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWL 126
               L            + Q+  +  + + G+  ALPTNTP +PCIF P GRA ICG WL
Sbjct: 368 KTGMLEGVEAALGLPKDSLQQPFYSRVQLWGA--ALPTNTPGIPCIFDPHGRAGICGDWL 425

Query: 127 LAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPGFGVHGK 186
           L +++ESAAL GMALANHIADYL SGG  PEE A+GL  +FQ LEGHD GQF   G+   
Sbjct: 426 LGSNLESAALSGMALANHIADYLRSGGARPEEFALGLNKEFQTLEGHDIGQFS--GLESS 483

Query: 187 RGSSSISTYLLN 198
            G+S I  Y L+
Sbjct: 484 TGASPIQAYQLS 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 122/197 (61%), Gaps = 15/197 (7%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T +   FEGAF  GVDS+SWMANN  K L+ Q D PHCWT  +   YGK+NKVPQ+  
Sbjct: 304 PDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLSTAAYGKQNKVPQENI 363

Query: 71  WKWVCSRVLRLYL------------AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGR 118
                 +V +  L            +  K  +  + + G+  ALPTN+P +PCIF P GR
Sbjct: 364 PTSTAEKVKKNMLEGVEAALGLSKGSLPKPFYTRVQLWGA--ALPTNSPGIPCIFDPHGR 421

Query: 119 ASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQF 178
           A ICG WLL +++ESAAL G+AL NHIADY  SG  H EE AVGL+ +FQP++GHD GQF
Sbjct: 422 AGICGDWLLGSNIESAALSGIALGNHIADYFRSGSEHSEEFAVGLHKEFQPIQGHDIGQF 481

Query: 179 PGFGVHGKRGSSSISTY 195
           PG G   K+  S++  +
Sbjct: 482 PGLGTE-KQAESTLEDW 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 122/197 (61%), Gaps = 15/197 (7%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T +   FEGAF  GVDS+SWMANN  K L+ Q D PHCWT  +   YGK+NKVPQ+  
Sbjct: 304 PDTAEKFPFEGAFVKGVDSLSWMANNNKKFLNFQKDGPHCWTFLSTAAYGKQNKVPQENI 363

Query: 71  WKWVCSRVLRLYL------------AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGR 118
                 +V +  L            +  K  +  + + G+  ALPTN+P +PCIF P GR
Sbjct: 364 PTSTAEKVKKNMLEGVEAALGLSKGSLPKPFYTRVQLWGA--ALPTNSPGIPCIFDPHGR 421

Query: 119 ASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQF 178
           A ICG WLL +++ESAAL G+AL NHIADY  SG  H EE AVGL+ +FQP++GHD GQF
Sbjct: 422 AGICGDWLLGSNIESAALSGIALGNHIADYFRSGSEHSEEFAVGLHKEFQPIQGHDIGQF 481

Query: 179 PGFGVHGKRGSSSISTY 195
           PG G   K+  S++  +
Sbjct: 482 PGLGTE-KQAESTLEDW 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489414|ref|NP_001067194.1| Os12g0597400 [Oryza sativa Japonica Group] gi|77556443|gb|ABA99239.1| expressed protein [Oryza sativa Japonica Group] gi|113649701|dbj|BAF30213.1| Os12g0597400 [Oryza sativa Japonica Group] gi|215701342|dbj|BAG92766.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 105/181 (58%), Gaps = 10/181 (5%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T     FEGAF   VDS+SWMANN  KL   Q+  P CWT  +   YGKRNKVPQ+  
Sbjct: 301 PQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENI 360

Query: 71  WKWVCSRV-------LRLYLAYQKVHFRSLFILGSNY---ALPTNTPSVPCIFVPQGRAS 120
            K    +V       + L L   +   +  F         ALP NTP VPCIF PQGRA 
Sbjct: 361 PKITAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAG 420

Query: 121 ICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPG 180
           ICG WL  +S+E+A L GM+LANHIADY  S G  PEE A+GL+ +   +EGHD GQFPG
Sbjct: 421 ICGDWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPG 480

Query: 181 F 181
            
Sbjct: 481 L 481

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537277|gb|EAY83765.1| hypothetical protein OsI_38983 [Oryza sativa Indica Group]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 105/181 (58%), Gaps = 10/181 (5%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T     FEGAF   VDS+SWMANN  KL   Q+  P CWT  +   YGKRNKVPQ+  
Sbjct: 301 PQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENI 360

Query: 71  WKWVCSRV-------LRLYLAYQKVHFRSLFILGSNY---ALPTNTPSVPCIFVPQGRAS 120
            K    +V       + L L   +   +  F         ALP NTP VPCIF PQGRA 
Sbjct: 361 PKITAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAG 420

Query: 121 ICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPG 180
           ICG WL  +S+E+A L GM+LANHIADY  S G  PEE A+GL+ +   +EGHD GQFPG
Sbjct: 421 ICGDWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPG 480

Query: 181 F 181
            
Sbjct: 481 L 481

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862915|gb|ABG22072.1| expressed protein [Oryza sativa Japonica Group]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 108/183 (59%), Gaps = 14/183 (7%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T     FEGAF   VDS+SWMANN  KL   Q+  P CWT  +   YGKRNKVPQ+  
Sbjct: 260 PQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENI 319

Query: 71  WKWVCSRVLRLYL------------AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGR 118
            K    +V    L            + Q+  +  + + G+  ALP NTP VPCIF PQGR
Sbjct: 320 PKITAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGA--ALPMNTPGVPCIFDPQGR 377

Query: 119 ASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQF 178
           A ICG WL  +S+E+A L GM+LANHIADY  S G  PEE A+GL+ +   +EGHD GQF
Sbjct: 378 AGICGDWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQF 437

Query: 179 PGF 181
           PG 
Sbjct: 438 PGL 440

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617407|gb|EEE53539.1| hypothetical protein OsJ_36748 [Oryza sativa Japonica Group]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 105/181 (58%), Gaps = 10/181 (5%)

Query: 11  PPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70
           P T     FEGAF   VDS+SWMANN  KL   Q+  P CWT  +   YGKRNKVPQ+  
Sbjct: 285 PQTDSYGTFEGAFVKDVDSLSWMANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQENI 344

Query: 71  WKWVCSRV-------LRLYLAYQKVHFRSLFILGSNY---ALPTNTPSVPCIFVPQGRAS 120
            K    +V       + L L   +   +  F         ALP NTP VPCIF PQGRA 
Sbjct: 345 PKITAEKVKEDMLRGVELALGLSRGSLQQPFYTRVQLWGAALPMNTPGVPCIFDPQGRAG 404

Query: 121 ICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQFPG 180
           ICG WL  +S+E+A L GM+LANHIADY  S G  PEE A+GL+ +   +EGHD GQFPG
Sbjct: 405 ICGDWLTGSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPG 464

Query: 181 F 181
            
Sbjct: 465 L 465

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 19/190 (10%)

Query: 10  PPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQR 69
           P PT   +NFEGAF  GV+S+SWM NN AKL + ++  PHCWT  +   YGK+NKVPQ+ 
Sbjct: 294 PLPT---VNFEGAFVKGVESLSWMGNNSAKLGNGRN--PHCWTFFSTAAYGKQNKVPQEN 348

Query: 70  RWKWVCSRVLRLYL------------AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQG 117
                  +V    L            +  K  +  L + G+  ALP NTP+VPCIF PQG
Sbjct: 349 IPTVTAEKVRAGMLQGVEIALGLPEGSLPKPVYTRLQLWGA--ALPKNTPAVPCIFDPQG 406

Query: 118 RASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQ 177
           RA ICG WLL +++ESAAL G AL NHIA++L +G  +PEE A+GL++   PL+GHD GQ
Sbjct: 407 RAGICGDWLLGSNLESAALSGAALGNHIAEFLQNGEANPEEFAIGLHDRLSPLDGHDIGQ 466

Query: 178 FPGFGVHGKR 187
           FPG    G++
Sbjct: 467 FPGLTSVGEK 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.864	0.353	0.478	2.9e-39

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/190 (47%), Positives = 120/190 (63%)

Query:    10 PPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQR 69
             P PT   +NFEGAF  GV+S+SWM NN AKL + ++  PHCWT  +   YGK+NKVPQ+ 
Sbjct:   294 PLPT---VNFEGAFVKGVESLSWMGNNSAKLGNGRTP-PHCWTFFSTAAYGKQNKVPQEN 349

Query:    70 RWKWVCSRV---------LRLYL---AYQKVHFRSLFILGSNYALPTNTPSVPCIFVPQG 117
                    +V         + L L   +  K  +  L + G+  ALP NTP+VPCIF PQG
Sbjct:   350 IPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYTRLQLWGA--ALPKNTPAVPCIFDPQG 407

Query:   118 RASICGGWLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHDTGQ 177
             RA ICG WLL +++ESAA+ G AL NHIA++L +G  +PEE A+GL++   PL GHD GQ
Sbjct:   408 RAGICGDWLLGSNLESAAISGAALGNHIAEFLQNGEANPEEFAIGLHDRLSPLAGHDIGQ 467

Query:   178 FPGFGVHGKR 187
             FPG    G++
Sbjct:   468 FPGLTSVGEK 477


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       199   0.00085  111 3  11 22  0.47    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.82u 0.11s 17.93t   Elapsed:  00:00:01
  Total cpu time:  17.82u 0.11s 17.93t   Elapsed:  00:00:01
  Start:  Thu May  9 16:09:53 2013   End:  Thu May  9 16:09:54 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002164001 SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (467 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	4e-04

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 100 YALPTNTPSVPCIFV-PQGRASICGGWLLAASVESAALGGMALANHIADYL 149
           YA+P +  + P +    +     CG W     VE A L G+A A+HI + L
Sbjct: 281 YAIPNDAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	100.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.27
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.03
PLN02576	496	protoporphyrinogen oxidase	99.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.82
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.58
PLN02268	435	probable polyamine oxidase	98.33
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.19
PLN02529	738	lysine-specific histone demethylase 1	98.06
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.02
PRK07233	434	hypothetical protein; Provisional	97.92
PLN02612	567	phytoene desaturase	97.12
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.95
PLN02676	487	polyamine oxidase	96.47
PLN03000	881	amine oxidase	96.15
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.05
PLN02976	1713	amine oxidase	95.83
PLN02568	539	polyamine oxidase	94.97
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	94.65
PLN02487	569	zeta-carotene desaturase	94.31
PRK07208	479	hypothetical protein; Provisional	87.46
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	85.57
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	82.32

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=248.89  Aligned_cols=132  Identities=20%  Similarity=0.315  Sum_probs=115.9

Q ss_pred             eeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHhc-
Q 042103            6 CIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLA-   84 (199)
Q Consensus         6 ~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL~-   84 (199)
                      +.++.|+++++.|++|.|+.++ +|.|+++|.+|+|  +.+..+.||+|++|+||++|+   +.    +.|++...|-. 
T Consensus       190 s~~lg~~q~l~~P~~G~~vdg~-~laWla~d~sK~g--~~p~~~~~vvqasp~wSr~h~---~~----~~e~~i~~l~aA  259 (331)
T COG3380         190 SAVLGYPQPLDRPWPGNFVDGH-PLAWLARDASKKG--HVPDGEIWVVQASPDWSREHL---DH----PAEQVIVALRAA  259 (331)
T ss_pred             HHHhcCCccCCCCCCCcccCCC-eeeeeeccccCCC--CCCcCceEEEEeCchHHHHhh---cC----CHHHHHHHHHHh
Confidence            5678999999999999998777 5999999999998  355677999999999999999   32    34455433332 


Q ss_pred             --------cCccCeEEeecccccCcccCCCCCCCeee-ecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103           85 --------YQKVHFRSLFILGSNYALPTNTPSVPCIF-VPQGRASICGGWLLAASVESAALGGMALANHIADYL  149 (199)
Q Consensus        85 --------l~~p~~~~aHRWr~~yA~p~~~~~~~~l~-d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l  149 (199)
                              ++.|.++.+||||  ||+|.+..+.+|++ |.+.+|++|||||.|+|||+|+|||+++|++|+++|
T Consensus       260 ~~~~~~~~~~~p~~s~~H~Wr--YA~P~~~~~~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L  331 (331)
T COG3380         260 AQELDGDRLPEPDWSDAHRWR--YAIPNDAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL  331 (331)
T ss_pred             hhhccCCCCCcchHHHhhccc--cccccccccCCccccCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence                    6789999999999  99999999999999 999999999999999999999999999999999865

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.27  E-value=3.5e-11  Score=109.36  Aligned_cols=143  Identities=10%  Similarity=-0.020  Sum_probs=95.3

Q ss_pred             CCcceeecCCCCCC-CCCcce--eEeCCC---CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhH
Q 042103            2 GPSCCIGGPPPTRQ-CINFEG--AFATGV---DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVC   75 (199)
Q Consensus         2 ~~~~~~~~~f~~~l-~~~~dg--a~v~~~---~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~   75 (199)
                      +|..++++.|+++. ..+.++  ..+...   ..+.|+.+++.+|++. .++...++++.+..++.++.   +..+++..
T Consensus       301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~---~~~~ee~~  376 (462)
T TIGR00562       301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRA-PPGKTLLTAYIGGATDESIV---DLSENEII  376 (462)
T ss_pred             CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcC-CCCcEEEEEEeCCCCCcccc---CCCHHHHH
Confidence            45566788887652 222333  333222   4589999888888621 12344677888777666654   21112233


Q ss_pred             HHHHHHHhc---cC-ccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHH
Q 042103           76 SRVLRLYLA---YQ-KVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMALAN  143 (199)
Q Consensus        76 e~V~~~LL~---l~-~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~  143 (199)
                      +.+.++|-.   ++ .|.+.++|||+  ||+|.-.++.        +++.....+|.+||||+.|.+||+|+.||+.+|+
T Consensus       377 ~~v~~~L~~~~gi~~~p~~~~v~rw~--~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~  454 (462)
T TIGR00562       377 NIVLRDLKKVLNINNEPEMLCVTRWH--RAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAAS  454 (462)
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEeEcc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHH
Confidence            444444333   44 48899999999  9999877663        1222334589999999999999999999999999


Q ss_pred             HHHHHhc
Q 042103          144 HIADYLG  150 (199)
Q Consensus       144 ~l~~~l~  150 (199)
                      +|++.+-
T Consensus       455 ~~~~~~~  461 (462)
T TIGR00562       455 DVLTFLF  461 (462)
T ss_pred             HHHHhhc
Confidence            9998863

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.03  E-value=2.8e-09  Score=94.23  Aligned_cols=133  Identities=11%  Similarity=0.046  Sum_probs=83.6

Q ss_pred             CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103            1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR   80 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~   80 (199)
                      +++.+++++.|+++.+.+.+..-+.+. .+.|+.+++.|++   .....+++++...++.+  +.+ |    +..+.+.+
T Consensus       273 ~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~-e----~~~~~~l~  341 (419)
T TIGR03467       273 YSPITTVHLRLDRAVRLPAPMVGLVGG-LAQWLFDRGQLAG---EPGYLAVVISAARDLVD--LPR-E----ELADRIVA  341 (419)
T ss_pred             CcceEEEEEEeCCCcCCCCCeeeecCC-ceeEEEECCcCCC---CCCEEEEEEecchhhcc--CCH-H----HHHHHHHH
Confidence            456678899999998655554434444 5899999888875   44455667776444321  111 1    22333333


Q ss_pred             HHhc----c--CccCeEEeec---ccccCcccCCCC-CCCeeeecCCCeEEEeCCCCCC---chHHHHHHHHHHHHHHH
Q 042103           81 LYLA----Y--QKVHFRSLFI---LGSNYALPTNTP-SVPCIFVPQGRASICGGWLLAA---SVESAALGGMALANHIA  146 (199)
Q Consensus        81 ~LL~----l--~~p~~~~aHR---Wr~~yA~p~~~~-~~~~l~d~~~~Lg~CGDW~~G~---rVE~A~lSG~aLA~~l~  146 (199)
                      .|-.    .  ..|.+..+.+   |.  |+.+.... -.+++.++..+|.+||||+.++   .||+|++||..+|++|+
T Consensus       342 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~  418 (419)
T TIGR03467       342 ELRRAFPRVAGAKPLWARVIKEKRAT--FAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL  418 (419)
T ss_pred             HHHHhcCccccCCccceEEEEccCCc--cccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence            3322    1  2355544444   45  55432211 1455667778999999999874   99999999999999986

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02576 protoporphyrinogen oxidase

Probab=99.00  E-value=2.6e-09  Score=98.47  Aligned_cols=144  Identities=12%  Similarity=0.014  Sum_probs=90.5

Q ss_pred             CcceeecCCCCCCCC-------CcceeEe-----CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCccccc
Q 042103            3 PSCCIGGPPPTRQCI-------NFEGAFA-----TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR   70 (199)
Q Consensus         3 ~~~~~~~~f~~~l~~-------~~dga~v-----~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~   70 (199)
                      |..+|++.|+++.+.       ++++...     .+...+.|+.++..+|++.. ++...++++...+.+.++..   ..
T Consensus       320 ~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~-~~~~~l~~~~~~~~~~~~~~---~s  395 (496)
T PLN02576        320 PVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAP-EGRVLLLNYIGGSRNTGIAS---AS  395 (496)
T ss_pred             ceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCC-CCCEEEEEEECCCCCccccc---CC
Confidence            445678888775322       3334321     12235789998888886221 22234555655555444431   11


Q ss_pred             chhhHHHHHHHH---hcc---CccCeEEeecccccCcccCCCCCCCee-------eecC--CCeEEEeCCCCCCchHHHH
Q 042103           71 WKWVCSRVLRLY---LAY---QKVHFRSLFILGSNYALPTNTPSVPCI-------FVPQ--GRASICGGWLLAASVESAA  135 (199)
Q Consensus        71 ~~~~~e~V~~~L---L~l---~~p~~~~aHRWr~~yA~p~~~~~~~~l-------~d~~--~~Lg~CGDW~~G~rVE~A~  135 (199)
                      +++..+.+.++|   +..   +.|....+|+|+  +|.|.-..+....       .+..  .+|.+||||+.|.+||+|+
T Consensus       396 ~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~--~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai  473 (496)
T PLN02576        396 EEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWP--KAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCV  473 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcC--cccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHH
Confidence            112333333333   221   257788899999  9999777653211       1333  5999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 042103          136 LGGMALANHIADYLGSG  152 (199)
Q Consensus       136 lSG~aLA~~l~~~l~~~  152 (199)
                      .||..+|++|++.+.++
T Consensus       474 ~sg~~aA~~i~~~~~~~  490 (496)
T PLN02576        474 ESGYEAADLVISYLESS  490 (496)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999987654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.82  E-value=4.8e-08  Score=87.96  Aligned_cols=141  Identities=9%  Similarity=-0.056  Sum_probs=89.4

Q ss_pred             CCCcceeecCCCCCC-C-CCcceeEeC-C-CCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103            1 MGPSCCIGGPPPTRQ-C-INFEGAFAT-G-VDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS   76 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l-~-~~~dga~v~-~-~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e   76 (199)
                      |++..++.+.|+++. . .+..++++. + ...+.++..++.|... ..+....++.+....|+.+.+.  +..+++..+
T Consensus       294 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~p~g~~~~~~~~~~~~~~~~~--~~~~~~~~~  370 (451)
T PRK11883        294 STSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPH-TTPEGKVLLRLYVGRPGDEAVV--DATDEELVA  370 (451)
T ss_pred             CCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCC-CCCCCcEEEEEecCCCCCchhc--cCCHHHHHH
Confidence            466778899998874 2 233456554 2 2236777777777431 1223346787888777654431  111112233


Q ss_pred             HHHHHHhc---c-CccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHH
Q 042103           77 RVLRLYLA---Y-QKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGMALANH  144 (199)
Q Consensus        77 ~V~~~LL~---l-~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~  144 (199)
                      .+.++|-+   + ..|.+..++||+  ||+|.-.++..        .+-. -.+|.++|||+.+..||+|++||+.+|++
T Consensus       371 ~~~~~L~~~~g~~~~~~~~~~~rw~--~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g~~i~~av~sg~~~a~~  447 (451)
T PRK11883        371 FVLADLSKVMGITGDPEFTIVQRWK--EAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEGVGLPDCIAQAKRAAAR  447 (451)
T ss_pred             HHHHHHHHHhCCCCCceEEEEeecC--ccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCCccHHHHHHHHHHHHHH
Confidence            33333322   2 357789999999  99987655421        1111 24899999999999999999999999999


Q ss_pred             HHH
Q 042103          145 IAD  147 (199)
Q Consensus       145 l~~  147 (199)
                      |++
T Consensus       448 i~~  450 (451)
T PRK11883        448 LLA  450 (451)
T ss_pred             HHh
Confidence            975

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.58  E-value=4e-07  Score=83.53  Aligned_cols=62  Identities=11%  Similarity=0.034  Sum_probs=52.5

Q ss_pred             CccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103           86 QKVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYL  149 (199)
Q Consensus        86 ~~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l  149 (199)
                      .+|.+..++||+  ++.|....+.        ..+-++..+|.+||||+.|..||+|+.||..+|++|++.+
T Consensus       392 ~~p~~~~v~~W~--~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~  461 (463)
T PRK12416        392 GEPEVVEVTNWK--DLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEIIATL  461 (463)
T ss_pred             CCceEEEEEEcc--ccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHHHHh
Confidence            378899999999  9999876552        2344445799999999999999999999999999999875

>PLN02268 probable polyamine oxidase

Probab=98.33  E-value=4e-06  Score=76.23  Aligned_cols=138  Identities=14%  Similarity=-0.006  Sum_probs=84.0

Q ss_pred             CCCcceeecCCCCCCCCC--cceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103            1 MGPSCCIGGPPPTRQCIN--FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV   78 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~--~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V   78 (199)
                      ||+.+.+.+.|+++.+..  +-|..+.......|..+...+.      +...++.+...+++++..   +..+++..+.|
T Consensus       277 ~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~------g~~~l~~~~~g~~a~~~~---~~~~~e~~~~v  347 (435)
T PLN02268        277 VGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKAT------GHPVLVYMPAGRLARDIE---KLSDEAAANFA  347 (435)
T ss_pred             ccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCC------CCCEEEEEeccHHHHHHH---hCCHHHHHHHH
Confidence            577888999999886543  2232222222345655443222      234678888888877653   11111223333


Q ss_pred             HHHHhc----cCccCeEEeeccccc------CcccCCCCCC-----CeeeecCCCeEEEeCCCCC---CchHHHHHHHHH
Q 042103           79 LRLYLA----YQKVHFRSLFILGSN------YALPTNTPSV-----PCIFVPQGRASICGGWLLA---ASVESAALGGMA  140 (199)
Q Consensus        79 ~~~LL~----l~~p~~~~aHRWr~~------yA~p~~~~~~-----~~l~d~~~~Lg~CGDW~~G---~rVE~A~lSG~a  140 (199)
                      .++|-.    ...|....+|+|.++      |+.+  .++.     +.+..+..+|.+||+++..   +.||||+.||+.
T Consensus       348 ~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~--~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~r  425 (435)
T PLN02268        348 MSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYD--LVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVM  425 (435)
T ss_pred             HHHHHHHcCCCCCccEEEecccCCCCCCCccCCCC--CCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHH
Confidence            333333    336788889999732      2222  1221     1234556789999999865   689999999999


Q ss_pred             HHHHHHHHh
Q 042103          141 LANHIADYL  149 (199)
Q Consensus       141 LA~~l~~~l  149 (199)
                      +|++|++.|
T Consensus       426 aA~~v~~~l  434 (435)
T PLN02268        426 AAEECRMRL  434 (435)
T ss_pred             HHHHHHHhh
Confidence            999998765

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.19  E-value=1.1e-05  Score=81.03  Aligned_cols=145  Identities=13%  Similarity=0.019  Sum_probs=87.9

Q ss_pred             CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCC-------CCCCCCcEEEEEeChHHHhhcCCcccccchh
Q 042103            1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLS-------SQSDAPHCWTSSTLQLYGKRNKVPQQRRWKW   73 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~-------~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~   73 (199)
                      ||+.+.|++.|+++.+-.       +.+.+.++..+.+++|+       ....+...++.+...+++.+...   ..+++
T Consensus       512 yG~~~KV~L~F~~~FW~~-------~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~---lsdeE  581 (808)
T PLN02328        512 YGLLNKVALLFPYNFWGG-------EIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFET---LSPVE  581 (808)
T ss_pred             CcceEEEEEEeCCccccC-------CCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhc---CCHHH
Confidence            578888999999886531       11124444444444331       00123468899999999887641   11111


Q ss_pred             hHHHHHHH---Hhc-----cCccCeEEeeccccc------CcccCCC-CC--CCeeeec--CCCeEEEeCCCCC---Cch
Q 042103           74 VCSRVLRL---YLA-----YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP--QGRASICGGWLLA---ASV  131 (199)
Q Consensus        74 ~~e~V~~~---LL~-----l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~--~~~Lg~CGDW~~G---~rV  131 (199)
                      ..+.+.+.   ++.     .+.|....+|||+++      |+.+... .+  ...+..+  +.+|.+||+++..   +.|
T Consensus       582 ~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtV  661 (808)
T PLN02328        582 SVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATM  661 (808)
T ss_pred             HHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEh
Confidence            23333333   222     236778899999822      3332211 11  1233333  4699999999874   589


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCC
Q 042103          132 ESAALGGMALANHIADYLGSGGVH  155 (199)
Q Consensus       132 E~A~lSG~aLA~~l~~~l~~~~~~  155 (199)
                      |||++||+.+|++|++.+.+....
T Consensus       662 hGAi~SGlRAA~eIl~~~~~~~~~  685 (808)
T PLN02328        662 HGAFLSGMREAANILRVARRRSLC  685 (808)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccC
Confidence            999999999999999988666444

>PLN02529 lysine-specific histone demethylase 1

Probab=98.06  E-value=2.1e-05  Score=78.34  Aligned_cols=144  Identities=15%  Similarity=0.047  Sum_probs=83.4

Q ss_pred             CCCcceeecCCCCCCCCC---cceeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhh
Q 042103            1 MGPSCCIGGPPPTRQCIN---FEGAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWV   74 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~---~dga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~   74 (199)
                      ||+...|.+.|+++.+..   +-|....   +...+.+. .+..+.     .+..+++.+...+++.+...   ..+++.
T Consensus       432 yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~-~~~~~~-----~ggpvLvafv~G~~A~~le~---lsdeei  502 (738)
T PLN02529        432 FGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLF-YGYHTV-----SGGPALVALVAGEAAQRFEN---TDPSTL  502 (738)
T ss_pred             CceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEE-ecCCCC-----CCCCEEEEEECchhhHHHhc---CCHHHH
Confidence            578888999999885522   1122111   11111111 122222     12357888988888876531   111112


Q ss_pred             HHHHHHH---Hhc-----cCccCeEEeeccccc------CcccCCC-CC--CCeeeec-CCCeEEEeCCCCC---CchHH
Q 042103           75 CSRVLRL---YLA-----YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP-QGRASICGGWLLA---ASVES  133 (199)
Q Consensus        75 ~e~V~~~---LL~-----l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~-~~~Lg~CGDW~~G---~rVE~  133 (199)
                      .+.+.+.   ++.     ++.|.....|+|.++      |+.+... .+  ...+..+ ..+|.+|||++..   +.|||
T Consensus       503 i~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeG  582 (738)
T PLN02529        503 LHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHG  582 (738)
T ss_pred             HHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHH
Confidence            3333333   221     346777889999831      3443211 11  1133333 4799999999865   58999


Q ss_pred             HHHHHHHHHHHHHHHhcCCC
Q 042103          134 AALGGMALANHIADYLGSGG  153 (199)
Q Consensus       134 A~lSG~aLA~~l~~~l~~~~  153 (199)
                      |++||+.+|++|++.+.+..
T Consensus       583 Ai~SG~RAA~eIl~~l~~~~  602 (738)
T PLN02529        583 AFLSGLREASRILHVARSQQ  602 (738)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999886654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.02  E-value=2.2e-05  Score=67.48  Aligned_cols=138  Identities=13%  Similarity=0.011  Sum_probs=80.9

Q ss_pred             CcceeecCCCCCCCCC---cceeEeCCC-CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103            3 PSCCIGGPPPTRQCIN---FEGAFATGV-DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV   78 (199)
Q Consensus         3 ~~~~~~~~f~~~l~~~---~dga~v~~~-~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V   78 (199)
                      +.+.|.+.|+++.+..   +.+..+.+. ..+.++...+.+++   +.+...++.-....++.+...   ..+++..+.+
T Consensus       290 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~e~~~~~~  363 (450)
T PF01593_consen  290 SVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPG---RPGGGVLTSYVGGPDAPEWDD---LSDEEILERV  363 (450)
T ss_dssp             EEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTS---CTTSEEEEEEEEHHHHHHHTT---SCHHHHHHHH
T ss_pred             cceeEEEeeecccccccccccceecccCccccccccccccCcc---cccCCcceeeeeccccchhcc---cchhhhHHHH
Confidence            3467788888887654   455555544 45888888888886   233444555555555433321   1111233444


Q ss_pred             HHHHhc------cCccCeEEeecccc-cCcccCCC---CCCC-----eeeecC-CCeEEEeCCCCCC---chHHHHHHHH
Q 042103           79 LRLYLA------YQKVHFRSLFILGS-NYALPTNT---PSVP-----CIFVPQ-GRASICGGWLLAA---SVESAALGGM  139 (199)
Q Consensus        79 ~~~LL~------l~~p~~~~aHRWr~-~yA~p~~~---~~~~-----~l~d~~-~~Lg~CGDW~~G~---rVE~A~lSG~  139 (199)
                      .+.|-.      .+.|....+++|.. .|++..-.   .+..     .+..+- .+|.+||||+.++   .+|+|++||.
T Consensus       364 ~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~  443 (450)
T PF01593_consen  364 LDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGR  443 (450)
T ss_dssp             HHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHH
T ss_pred             HHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHH
Confidence            444333      33566667889983 12222111   1111     122333 5999999999865   9999999999


Q ss_pred             HHHHHHH
Q 042103          140 ALANHIA  146 (199)
Q Consensus       140 aLA~~l~  146 (199)
                      .+|++|+
T Consensus       444 ~aA~~il  450 (450)
T PF01593_consen  444 RAAEEIL  450 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK07233 hypothetical protein; Provisional

Probab=97.92  E-value=0.00013  Score=65.20  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             ccCeEEeecccccCcccCCCCC----CCeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhc
Q 042103           87 KVHFRSLFILGSNYALPTNTPS----VPCIFVPQGRASICGGWLL---AASVESAALGGMALANHIADYLG  150 (199)
Q Consensus        87 ~p~~~~aHRWr~~yA~p~~~~~----~~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~  150 (199)
                      .+....++||+  ||.|...++    .+.+-.+..+|.+|||+..   +..+|+|+.||..+|++|++.+.
T Consensus       364 ~~~~~~~~r~~--~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        364 DVRAVRISRAP--YAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             heeeEEEEEec--cccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence            35778899999  999876544    2334445578999999743   34899999999999999988763

>PLN02612 phytoene desaturase

Probab=97.12  E-value=0.0038  Score=60.09  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=32.0

Q ss_pred             cCCCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhcC
Q 042103          115 PQGRASICGGWLLA---ASVESAALGGMALANHIADYLGS  151 (199)
Q Consensus       115 ~~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~~  151 (199)
                      +-.+|.+||||+..   +.+|+|++||..+|+.|++.+..
T Consensus       511 Pi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~  550 (567)
T PLN02612        511 PIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL  550 (567)
T ss_pred             ccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            34589999999864   68999999999999999988754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.95  E-value=0.0021  Score=60.37  Aligned_cols=71  Identities=25%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             hHHHHHHHHhc-cC-----ccCeEEeecccccCcccCCCCCC----CeeeecCCCeEEEeCCCCC---CchHHHHHHHHH
Q 042103           74 VCSRVLRLYLA-YQ-----KVHFRSLFILGSNYALPTNTPSV----PCIFVPQGRASICGGWLLA---ASVESAALGGMA  140 (199)
Q Consensus        74 ~~e~V~~~LL~-l~-----~p~~~~aHRWr~~yA~p~~~~~~----~~l~d~~~~Lg~CGDW~~G---~rVE~A~lSG~a  140 (199)
                      ..+++.++|-. .+     ++...++-|..  .|.+...+|.    |-...+-.+|.+||||...   ..+|+|+.||..
T Consensus       391 l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~--~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~  468 (474)
T TIGR02732       391 IAKRVDKQVRALFPSSKNLKLTWSSVVKLA--QSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQ  468 (474)
T ss_pred             HHHHHHHHHHHhCccccCCceeEEEEEEec--CceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHH
Confidence            45556555544 21     23444455555  5555433332    2223334589999999987   899999999999


Q ss_pred             HHHHHH
Q 042103          141 LANHIA  146 (199)
Q Consensus       141 LA~~l~  146 (199)
                      +|++|+
T Consensus       469 aA~~i~  474 (474)
T TIGR02732       469 AAAAIL  474 (474)
T ss_pred             HHHHhC
Confidence            999873

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02676 polyamine oxidase

Probab=96.47  E-value=0.033  Score=52.77  Aligned_cols=141  Identities=14%  Similarity=0.013  Sum_probs=78.2

Q ss_pred             CCCcceeecCCCCCCCCC-cce-eE-eCCCC---cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCcccccch
Q 042103            1 MGPSCCIGGPPPTRQCIN-FEG-AF-ATGVD---SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRRWK   72 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~-~dg-a~-v~~~~---~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~~~   72 (199)
                      ||...-|.+.|++|.+.. ... .+ ..+.+   ...|..-+.+.++      ..+.+...+.+-+++-  +.+ |    
T Consensus       311 ~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~g~~a~~~~~~s~-e----  379 (487)
T PLN02676        311 MAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPG------SNVLFVTVTDEESRRIEQQPD-S----  379 (487)
T ss_pred             ceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCC------CCEEEEEechHHHHHHHhCCH-H----
Confidence            577788889999887643 111 11 11110   0223332333332      2366677666665542  212 1    


Q ss_pred             hhHHHHHHHHhc-----cCccCeEEeeccccc-Ccc---cCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHH
Q 042103           73 WVCSRVLRLYLA-----YQKVHFRSLFILGSN-YAL---PTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAA  135 (199)
Q Consensus        73 ~~~e~V~~~LL~-----l~~p~~~~aHRWr~~-yA~---p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~  135 (199)
                      +..+.+.+.|-.     ++.|.....|.|.++ |+.   ..-+++.     ..+-.|..+|.++|+-+.   .+-||||+
T Consensus       380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~  459 (487)
T PLN02676        380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY  459 (487)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHH
Confidence            123333333332     456777788999621 111   0111121     122345579999999765   37899999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 042103          136 LGGMALANHIADYLGSG  152 (199)
Q Consensus       136 lSG~aLA~~l~~~l~~~  152 (199)
                      .||...|++|++.+.+.
T Consensus       460 ~SG~RaA~~I~~~l~~~  476 (487)
T PLN02676        460 LAGIDTANDLLECIKKK  476 (487)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999988653

>PLN03000 amine oxidase

Probab=96.15  E-value=0.083  Score=54.17  Aligned_cols=145  Identities=14%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             CCCcceeecCCCCCCCCC---cceeEeCCCC--cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCcccccchh
Q 042103            1 MGPSCCIGGPPPTRQCIN---FEGAFATGVD--SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRRWKW   73 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~~--~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~~~~   73 (199)
                      ||...-|.+.|+++-+-.   +-|..+.+..  ...++-.+.++..     +....+.....+-+.+-  +.++|     
T Consensus       456 ~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~-----G~pVLvafv~Gd~A~~le~lSdeE-----  525 (881)
T PLN03000        456 FGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVA-----GGPLLIALVAGEAAHKFETMPPTD-----  525 (881)
T ss_pred             CcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCC-----CCcEEEEEecCchhHHhhcCCHHH-----
Confidence            567778899999886532   2233332211  1223334444431     12355555555555432  22211     


Q ss_pred             hHHHHHHH---Hhc-----cCccCeEEeeccccc-Ccc---cCCCCCC-C----eeeec--CCCeEEEeCCCCC---Cch
Q 042103           74 VCSRVLRL---YLA-----YQKVHFRSLFILGSN-YAL---PTNTPSV-P----CIFVP--QGRASICGGWLLA---ASV  131 (199)
Q Consensus        74 ~~e~V~~~---LL~-----l~~p~~~~aHRWr~~-yA~---p~~~~~~-~----~l~d~--~~~Lg~CGDW~~G---~rV  131 (199)
                      ..+.|.+.   ++.     ++.|....+++|.+. |++   ..-.++. .    .+-.+  +.+|.++|+.+..   +-|
T Consensus       526 ~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTV  605 (881)
T PLN03000        526 AVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATM  605 (881)
T ss_pred             HHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeH
Confidence            22333333   332     346788899999832 211   1011121 1    11122  4689999997654   789


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCC
Q 042103          132 ESAALGGMALANHIADYLGSGGVH  155 (199)
Q Consensus       132 E~A~lSG~aLA~~l~~~l~~~~~~  155 (199)
                      |||++||+..|++|++.+.+...+
T Consensus       606 hGAieSGlRAA~eIl~~l~~~~~~  629 (881)
T PLN03000        606 HGAFVTGLREAANMAQSAKARGIR  629 (881)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999766555

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.05  E-value=0.076  Score=48.72  Aligned_cols=51  Identities=25%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             eecccccCcccCCCCCC----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHH
Q 042103           93 LFILGSNYALPTNTPSV----PCIFVPQGRASICGGWLL---AASVESAALGGMALANHI  145 (199)
Q Consensus        93 aHRWr~~yA~p~~~~~~----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l  145 (199)
                      ..+..  |+.+..+++.    +.+..+..+|.++|||..   .+.+|+|+.||..+|+.|
T Consensus       395 ~~~~p--~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v  452 (453)
T TIGR02731       395 VVKTP--RSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI  452 (453)
T ss_pred             EEECC--CceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence            33455  7754333332    344455679999999974   369999999999999987

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02976 amine oxidase

Probab=95.83  E-value=0.14  Score=55.38  Aligned_cols=146  Identities=14%  Similarity=0.045  Sum_probs=78.6

Q ss_pred             CCCcceeecCCCCCCCCC---cceeEeCCC--CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhH
Q 042103            1 MGPSCCIGGPPPTRQCIN---FEGAFATGV--DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVC   75 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~--~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~   75 (199)
                      ||...-|.+.|+++.|..   +-|....+.  ...-|+.-|..++.     +....+.......+.+..   ...+.+..
T Consensus      1022 fG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps-----G~pVLVafv~G~aAreiE---sLSDEE~V 1093 (1713)
T PLN02976       1022 FGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV-----GAPVLIALVVGKAAIDGQ---SMSSSDHV 1093 (1713)
T ss_pred             cccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC-----CCCEEEEEeccHhHHHHh---hCCHHHHH
Confidence            566777888898876532   122221111  11224444444432     223455555555554321   11111122


Q ss_pred             HHHHH---HHhc---cCccCeEEeeccccc-Cccc---CCCCCC-C----eeeec-CCCeEEEeCCCC---CCchHHHHH
Q 042103           76 SRVLR---LYLA---YQKVHFRSLFILGSN-YALP---TNTPSV-P----CIFVP-QGRASICGGWLL---AASVESAAL  136 (199)
Q Consensus        76 e~V~~---~LL~---l~~p~~~~aHRWr~~-yA~p---~~~~~~-~----~l~d~-~~~Lg~CGDW~~---G~rVE~A~l  136 (199)
                      +.+.+   .++.   ++.|....+++|.++ |++=   ..++|. .    .+-.| ..+|.++|+.+.   .+-||||++
T Consensus      1094 e~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIe 1173 (1713)
T PLN02976       1094 NHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMM 1173 (1713)
T ss_pred             HHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHH
Confidence            22222   2332   357888889999743 3221   111121 1    12223 346999998553   378999999


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 042103          137 GGMALANHIADYLGSGGV  154 (199)
Q Consensus       137 SG~aLA~~l~~~l~~~~~  154 (199)
                      ||...|++|+..+.++.+
T Consensus      1174 SG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976       1174 SGLREAVRIIDILNTGND 1191 (1713)
T ss_pred             HHHHHHHHHHHHHHccCc
Confidence            999999999999987655

>PLN02568 polyamine oxidase

Probab=94.97  E-value=0.5  Score=45.61  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             CeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhc
Q 042103          118 RASICGGWLLA---ASVESAALGGMALANHIADYLG  150 (199)
Q Consensus       118 ~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~  150 (199)
                      +|.++|.-...   +-|+||++||+..|++|+++..
T Consensus       501 ~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~  536 (539)
T PLN02568        501 QLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK  536 (539)
T ss_pred             cEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence            79999975543   5699999999999999998764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=94.65  E-value=0.32  Score=46.55  Aligned_cols=144  Identities=18%  Similarity=0.185  Sum_probs=89.1

Q ss_pred             CCCcceeecCCCCCCCC--C-cceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHH
Q 042103            1 MGPSCCIGGPPPTRQCI--N-FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSR   77 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~--~-~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~   77 (199)
                      ||+.|-+++.|+.|.+-  + +-|.-+.|.. +..|..+|+ +.   .++.  =||+++-.|..+.++=+.-.+.+-.+.
T Consensus       285 y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~---~~G~--gVl~g~~~~g~~A~~~~~~~~~~r~~~  357 (450)
T COG1231         285 YGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PF---ADGP--GVLLGSYAFGDDALVIDALPEAERRQK  357 (450)
T ss_pred             cchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-cc---CCCc--eEEEeeeeccccceeEecCCHHHHHHH
Confidence            67889999999999875  3 5566666765 777777777 54   3333  489998888877652111111112333


Q ss_pred             HHHHHhc-cC-----ccCeEEeeccccc------Ccc-cCCC-C-CCCeeeecCCCeEEEe-CCC--CCCchHHHHHHHH
Q 042103           78 VLRLYLA-YQ-----KVHFRSLFILGSN------YAL-PTNT-P-SVPCIFVPQGRASICG-GWL--LAASVESAALGGM  139 (199)
Q Consensus        78 V~~~LL~-l~-----~p~~~~aHRWr~~------yA~-p~~~-~-~~~~l~d~~~~Lg~CG-DW~--~G~rVE~A~lSG~  139 (199)
                      |...|-. .+     ...+...++|-+.      ++. +... . -.+.+--+..||..+| -+-  .++=+|||.+||.
T Consensus       358 vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~  437 (450)
T COG1231         358 VLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQ  437 (450)
T ss_pred             HHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHH
Confidence            3333322 11     2345477888621      111 1111 0 0123335678999999 553  4688999999999


Q ss_pred             HHHHHHHHHhcC
Q 042103          140 ALANHIADYLGS  151 (199)
Q Consensus       140 aLA~~l~~~l~~  151 (199)
                      .+|.+|...+++
T Consensus       438 ~AA~ei~~~l~s  449 (450)
T COG1231         438 RAAAEIHALLSS  449 (450)
T ss_pred             HHHHHHHHhhcC
Confidence            999999998864

>PLN02487 zeta-carotene desaturase

Probab=94.31  E-value=0.14  Score=49.82  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHh
Q 042103          117 GRASICGGWLLA---ASVESAALGGMALANHIADYL  149 (199)
Q Consensus       117 ~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l  149 (199)
                      .+|.+||||...   ..+|+|++||..+|+.|++.-
T Consensus       518 ~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        518 SNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             CCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            589999999853   699999999999999997743

>PRK07208 hypothetical protein; Provisional

Probab=87.46  E-value=0.78  Score=42.34  Aligned_cols=60  Identities=12%  Similarity=-0.007  Sum_probs=44.6

Q ss_pred             ccCeEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeCCC--CCCchHHHHHHHHHHHHHHHHH
Q 042103           87 KVHFRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGGWL--LAASVESAALGGMALANHIADY  148 (199)
Q Consensus        87 ~p~~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGDW~--~G~rVE~A~lSG~aLA~~l~~~  148 (199)
                      .|...+++||.  +|.|.-..+-..       +.+...+|.++|+..  .-..+|.|+.||..+|+.|++.
T Consensus       392 ~~~~~~v~r~~--~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~  460 (479)
T PRK07208        392 DVEDGFVVRVP--KAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG  460 (479)
T ss_pred             heeEEEEEEec--CcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence            36788899999  999966533211       123345899999842  3368999999999999998876

>TIGR02734 crtI_fam phytoene desaturase

Probab=85.57  E-value=1.5  Score=40.91  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=31.7

Q ss_pred             CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103          117 GRASICGGWLL-AASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus       117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      .+|++||+|+. |+.|-+|.+||+-+|++|++.+..+
T Consensus       459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~  495 (502)
T TIGR02734       459 DNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPG  495 (502)
T ss_pred             CCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence            48999999997 5699999999999999999876544

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=82.32  E-value=9.9  Score=36.36  Aligned_cols=133  Identities=10%  Similarity=-0.026  Sum_probs=75.2

Q ss_pred             eeecCCCCC---CCCCcceeEeCCCCc-EEEEEecCCCCCCCCCCCCcEEE-EEeCh--HHHhhcCCcccccchhhHHHH
Q 042103            6 CIGGPPPTR---QCINFEGAFATGVDS-VSWMANNYAKLLSSQSDAPHCWT-SSTLQ--LYGKRNKVPQQRRWKWVCSRV   78 (199)
Q Consensus         6 ~~~~~f~~~---l~~~~dga~v~~~~~-LsWiA~nsSKpg~~~~~~~e~WV-lhaTp--~wS~~hl~pqe~~~~~~~e~V   78 (199)
                      ||.++++.+   ...+--|..|.+..+ +.=+.-+|.|-... .+.....+ +-..-  +.+.-+..+     ++..+.+
T Consensus       292 ~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~-~p~g~~ll~~~~~~~g~~~~~~~~d-----ee~~~~~  365 (444)
T COG1232         292 TVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHE-APEGKTLLRVEFGGPGDESVSTMSD-----EELVAAV  365 (444)
T ss_pred             EEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCC-CCCCcEEEEEEeecCCCcchhccCH-----HHHHHHH
Confidence            555666654   222344677777665 55555566664311 11122111 11111  111111111     1233444


Q ss_pred             HHHHhc----cCccCeEEeecccccCcccCCCCCC-----CeeeecC---CCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103           79 LRLYLA----YQKVHFRSLFILGSNYALPTNTPSV-----PCIFVPQ---GRASICGGWLLAASVESAALGGMALANHIA  146 (199)
Q Consensus        79 ~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~-----~~l~d~~---~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~  146 (199)
                      .+.|-.    -..|.+..+.||+  ++.|.-..|-     +..-...   .+|.+.|=|..+..+=+...+|...|++|+
T Consensus       366 l~~L~~~~~~~~~~~~~~v~r~~--~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~  443 (444)
T COG1232         366 LDDLKKLGGINGDPVFVEVTRWK--YAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL  443 (444)
T ss_pred             HHHHHHHcCcCcchhheeeeecc--ccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence            444444    3368899999999  9999765331     1111112   789999999999999999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-09
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	6e-04

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 11/135 (8%), Positives = 40/135 (29%), Gaps = 6/135 (4%)

Query: 19  FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN-KVPQQRRWKWVCSR 77
           + G + T    + +++ +  K     S+        T   +G    +   +   + V  +
Sbjct: 210 WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQ 269

Query: 78  VLRLYLAYQKVHFRSLFILGSNYALPTNTPS---VPCIFVPQGRASICGGWLLAASVESA 134
           +  +     +            ++  TN  +          +   +  G     ++ +  
Sbjct: 270 LENILPGLPQPIATKCQ--KWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGC 327

Query: 135 ALGGMALANHIADYL 149
               + +   + +Y+
Sbjct: 328 ITSALCVLEALKNYI 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.89
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.79
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.55
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.12
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.98
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.93
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.65
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.44
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.31
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.22
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.62
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.17
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.07
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.02
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.8
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.71
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.7
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.39
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	91.83
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	91.3
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	91.19
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	90.79
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	82.36

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=177.62  Aligned_cols=144  Identities=9%  Similarity=0.035  Sum_probs=110.7

Q ss_pred             CCCcceeecCCCCC--CCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103            1 MGPSCCIGGPPPTR--QCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV   78 (199)
Q Consensus         1 ~~~~~~~~~~f~~~--l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V   78 (199)
                      |+|..+|++.|+++  ++.+++|.++.+++.+.|+++|++||+|...++..+||+|++++|+++|+   +..+++..+.+
T Consensus       190 ~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~  266 (342)
T 3qj4_A          190 YSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL---EHSIEDVQELV  266 (342)
T ss_dssp             BCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT---TSCHHHHHHHH
T ss_pred             ccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh---cCCHHHHHHHH
Confidence            45667889999965  66789999988776799999999999732222446999999999999998   33222233333


Q ss_pred             HHHHhc----cCccCeEEeecccccCcccCCCC--CCCeee-ecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103           79 LRLYLA----YQKVHFRSLFILGSNYALPTNTP--SVPCIF-VPQGRASICGGWLLAASVESAALGGMALANHIADYL  149 (199)
Q Consensus        79 ~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~--~~~~l~-d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l  149 (199)
                      .++|-.    ++.|.+.++|||+  ||+|....  ...++. +...+|++||||+.|++||+|++||.++|++|+++|
T Consensus       267 ~~~l~~~~g~~~~p~~~~v~rW~--~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~~l  342 (342)
T 3qj4_A          267 FQQLENILPGLPQPIATKCQKWR--HSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI  342 (342)
T ss_dssp             HHHHHHHSCSCCCCSEEEEEEET--TCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhccCCCCCceeeecccc--ccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHhhC
Confidence            333332    5579999999999  99998765  344676 777899999999999999999999999999998754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.55  E-value=1.2e-13  Score=105.37  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             EEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHhc-----cCccCeEEeecccccCcccC
Q 042103           30 VSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLA-----YQKVHFRSLFILGSNYALPT  104 (199)
Q Consensus        30 LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL~-----l~~p~~~~aHRWr~~yA~p~  104 (199)
                      ..+...+.....  .......+.......+......   .......+.....+..     ++.+.+..+|||+  ||+|.
T Consensus       210 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~a~~~  282 (336)
T 3kkj_A          210 LDWLARNRSKPE--RDDTLDTWILHATSQWSRQNLD---ASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWL--YARPA  282 (336)
T ss_dssp             EEEEEEGGGSTT--CCCSSEEEEEEECHHHHHHTTT---SCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEE--EEEES
T ss_pred             cccccccccccc--cccccccceecccccccccccc---ccchhhhhhhhhhhhhhccCCcCcchheecccee--ecccc
Confidence            555555555543  1334456777888888776652   1111222333233333     5578899999999  99999


Q ss_pred             CCCCCCeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103          105 NTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus       105 ~~~~~~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      .+...+++++...+|++|||||.|++|++|+.||+.||++|+++|++.
T Consensus       283 ~~~~~~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~e  330 (336)
T 3kkj_A          283 GAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQLE  330 (336)
T ss_dssp             SCCCCSSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cccCccceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence            998889999999999999999999999999999999999999999653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.12  E-value=5e-11  Score=105.79  Aligned_cols=144  Identities=8%  Similarity=-0.092  Sum_probs=93.2

Q ss_pred             CcceeecCCCCCCCC-CcceeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCc-ccccchhhHHH
Q 042103            3 PSCCIGGPPPTRQCI-NFEGAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVP-QQRRWKWVCSR   77 (199)
Q Consensus         3 ~~~~~~~~f~~~l~~-~~dga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~p-qe~~~~~~~e~   77 (199)
                      +..+|.+.|+++... +--|..+.   +..++.|+-+++..|++.+.++...++++...+|+.++... .+..+++..+.
T Consensus       313 ~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~  392 (477)
T 3nks_A          313 SVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQR  392 (477)
T ss_dssp             EEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHH
T ss_pred             cEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHH
Confidence            345688889887542 12255553   33467887655444542212244567888899998876410 01111123333


Q ss_pred             HHHHHhc----cCccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHH
Q 042103           78 VLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGMALANHI  145 (199)
Q Consensus        78 V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l  145 (199)
                      +.++|-.    ...|.+.++|||+  +|.|.-..+..        ++.+...+|.+||||+.|.+||+|++||+.+|++|
T Consensus       393 ~~~~L~~~~g~~~~~~~~~v~rw~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~i  470 (477)
T 3nks_A          393 AQEAAATQLGLKEMPSHCLVHLHK--NCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSV  470 (477)
T ss_dssp             HHHHHHHHHCCCSCCSEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEEEEEEcC--CccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHHHHHHH
Confidence            3333332    3468899999999  99997765532        23333468999999999999999999999999999


Q ss_pred             HHH
Q 042103          146 ADY  148 (199)
Q Consensus       146 ~~~  148 (199)
                      +..
T Consensus       471 l~~  473 (477)
T 3nks_A          471 LGT  473 (477)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            863

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.98  E-value=2.4e-10  Score=101.80  Aligned_cols=146  Identities=9%  Similarity=-0.070  Sum_probs=84.2

Q ss_pred             CCcceeecCCCCCCCCCcce--eEeCCCCcE-----EEEEe--cCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccch
Q 042103            2 GPSCCIGGPPPTRQCINFEG--AFATGVDSV-----SWMAN--NYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWK   72 (199)
Q Consensus         2 ~~~~~~~~~f~~~l~~~~dg--a~v~~~~~L-----sWiA~--nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~   72 (199)
                      ++.+++.+.|+++.+.+.++  ..+.....+     .|.++  ++.+|+      ...+++.....+++++.   +..++
T Consensus       308 ~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~------~~~l~~~~~~~~~~~~~---~~~~e  378 (475)
T 3lov_A          308 HSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD------HTVLRAFVGRPGNDHLV---HESDE  378 (475)
T ss_dssp             EEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT------EEEEEEEECBTTBCGGG---GSCHH
T ss_pred             CeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC------cEEEEEEeCCCCCCccc---CCCHH
Confidence            45678889998876544443  444433222     34332  233331      22233333334444333   11111


Q ss_pred             hhHHHHHHHHhc----cCccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHH
Q 042103           73 WVCSRVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMA  140 (199)
Q Consensus        73 ~~~e~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~a  140 (199)
                      +..+.+.++|-.    ...|.+..+|||+  ++.|.-..+.        +.+..+..+|.+||||+.+..+|+|++||..
T Consensus       379 ~~~~~~~~~L~~~~g~~~~p~~~~v~~w~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~  456 (475)
T 3lov_A          379 VLQQAVLQDLEKICGRTLEPKQVIISRLM--DGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKT  456 (475)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCSEEEEEEEE--EEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEEEcc--cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHH
Confidence            223333333333    2368899999999  9988766553        2344455789999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchh
Q 042103          141 LANHIADYLGSGGVHPEE  158 (199)
Q Consensus       141 LA~~l~~~l~~~~~~~~~  158 (199)
                      +|++|++.+......++|
T Consensus       457 aA~~i~~~l~~~~~~~~~  474 (475)
T 3lov_A          457 MIESIELEQSHTDESVNE  474 (475)
T ss_dssp             HHHHHHHTC---------
T ss_pred             HHHHHHHHhhcccccccC
Confidence            999999999777655554

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.93  E-value=5.4e-10  Score=98.05  Aligned_cols=138  Identities=9%  Similarity=-0.017  Sum_probs=88.0

Q ss_pred             CCcceeecCCCCCCCC-C--cceeEeCCCCc-----EEEEEe--cCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccc
Q 042103            2 GPSCCIGGPPPTRQCI-N--FEGAFATGVDS-----VSWMAN--NYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRW   71 (199)
Q Consensus         2 ~~~~~~~~~f~~~l~~-~--~dga~v~~~~~-----LsWiA~--nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~   71 (199)
                      ++.+++.+.|+++.+. +  ..|..+.....     +.|.++  +..+|.     +...+++.....+++++.   +..+
T Consensus       309 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-----~~~~l~~~~~~~~~~~~~---~~~~  380 (470)
T 3i6d_A          309 TSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPE-----GKTLLRAYVGKAGDESIV---DLSD  380 (470)
T ss_dssp             EEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCT-----TCEEEEEEECCSSCCGGG---TSCH
T ss_pred             CceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCC-----CCEEEEEEECCCCCcccc---CCCH
Confidence            4567888899887642 2  23555543322     345443  223332     233455555555655443   1111


Q ss_pred             hhhHHHHHHHHhc----cCccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHH
Q 042103           72 KWVCSRVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGM  139 (199)
Q Consensus        72 ~~~~e~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~  139 (199)
                      ++..+.+.++|-.    ...|.+..+|||+  ++.|.-..+..        .+..+..+|.+||||+.|..||+|++||.
T Consensus       381 ~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~  458 (470)
T 3i6d_A          381 NDIINIVLEDLKKVMNINGEPEMTCVTRWH--ESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGK  458 (470)
T ss_dssp             HHHHHHHHHHHGGGSCCCSCCSEEEEEEEE--EEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEEEcC--CccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHH
Confidence            2234444444444    2468888999999  99886665532        23345578999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 042103          140 ALANHIADYL  149 (199)
Q Consensus       140 aLA~~l~~~l  149 (199)
                      .+|++|++.|
T Consensus       459 ~aA~~i~~~l  468 (470)
T 3i6d_A          459 AAVSDALTYL  468 (470)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999877

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.65  E-value=2e-08  Score=89.18  Aligned_cols=144  Identities=7%  Similarity=-0.059  Sum_probs=84.7

Q ss_pred             CCcceeecCCCCCCC-C-CcceeEeC--CCCcEEEEEecCCC-CCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103            2 GPSCCIGGPPPTRQC-I-NFEGAFAT--GVDSVSWMANNYAK-LLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS   76 (199)
Q Consensus         2 ~~~~~~~~~f~~~l~-~-~~dga~v~--~~~~LsWiA~nsSK-pg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e   76 (199)
                      ++..++.+.|+++.+ . +.-+..+.  .+..+.++..++++ +. ...++..+++++.+..++....   +..+++..+
T Consensus       316 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~p~g~~~l~~~~~~~~~~~~~---~~~~~~~~~  391 (478)
T 2ivd_A          316 APIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPF-RAEGGRVLYSCMVGGARQPGLV---EQDEDALAA  391 (478)
T ss_dssp             CCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGG-GBSTTCEEEEEEEECTTCGGGG---GSCHHHHHH
T ss_pred             CcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCC-cCCCCCEEEEEEeCCcCCcccc---CCCHHHHHH
Confidence            566788899988742 2 11233332  12236667766665 22 0012345778887776664432   111112233


Q ss_pred             HHHHHHhc----cCccCeEEeecccccCcccCCCCCCCee-------eecCCCeEEEeCCCCCCchHHHHHHHHHHHHHH
Q 042103           77 RVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVPCI-------FVPQGRASICGGWLLAASVESAALGGMALANHI  145 (199)
Q Consensus        77 ~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~~l-------~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l  145 (199)
                      .+.+.|-.    ...|....+|+|.  ++.|.-.++....       .....+|.+||||+.|..||+|++||+.+|++|
T Consensus       392 ~~~~~l~~~~~~~~~p~~~~~~~w~--~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~gA~~SG~~aA~~i  469 (478)
T 2ivd_A          392 LAREELKALAGVTARPSFTRVFRWP--LGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLNDCIRNAAQLADAL  469 (478)
T ss_dssp             HHHHHHHHHHCCCSCCSEEEEEEES--SCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEEECC--CcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            33333333    3357777899999  9887555442111       111368999999998888999999999999999


Q ss_pred             HHHhcC
Q 042103          146 ADYLGS  151 (199)
Q Consensus       146 ~~~l~~  151 (199)
                      ++.+.+
T Consensus       470 ~~~l~~  475 (478)
T 2ivd_A          470 VAGNTS  475 (478)
T ss_dssp             CC----
T ss_pred             HHhhcc
Confidence            887754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.44  E-value=4.9e-07  Score=79.69  Aligned_cols=141  Identities=11%  Similarity=-0.081  Sum_probs=85.1

Q ss_pred             CCCcceeecCCCCCCCC--CcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103            1 MGPSCCIGGPPPTRQCI--NFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV   78 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~--~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V   78 (199)
                      |++.+.+.+.|+++.+.  .+.|..+....++.|+.+++ ++.   . ...+++.+...+++++..   +..+++..+.+
T Consensus       291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~  362 (453)
T 2yg5_A          291 LGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNT-NHE---D-DRGTLVAFVSDEKADAMF---ELSAEERKATI  362 (453)
T ss_dssp             ECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEEECC-CTT---C-SSEEEEEEEEHHHHHHHH---HSCHHHHHHHH
T ss_pred             CcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEEeCC-CCC---C-CCCEEEEEeccHHHHHHh---cCCHHHHHHHH
Confidence            46677888899887532  34555554444577876655 442   1 234788888777765432   11111223333


Q ss_pred             HHHHhc-----cCccCeEEeeccccc-Ccc----cCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHH
Q 042103           79 LRLYLA-----YQKVHFRSLFILGSN-YAL----PTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAALGGMA  140 (199)
Q Consensus        79 ~~~LL~-----l~~p~~~~aHRWr~~-yA~----p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~a  140 (199)
                      .+.|-.     ...|.....|+|.++ |++    +...++.     +.+..+..+|.+|||++.   .+.||+|++||..
T Consensus       363 l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~  442 (453)
T 2yg5_A          363 LASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQR  442 (453)
T ss_dssp             HHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHH
T ss_pred             HHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHH
Confidence            333322     346888889999732 222    1111111     112234468999999873   3589999999999


Q ss_pred             HHHHHHHHh
Q 042103          141 LANHIADYL  149 (199)
Q Consensus       141 LA~~l~~~l  149 (199)
                      +|++|++.+
T Consensus       443 aA~~i~~~l  451 (453)
T 2yg5_A          443 TAADIIARS  451 (453)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999999876

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.31  E-value=1.7e-06  Score=77.40  Aligned_cols=140  Identities=9%  Similarity=-0.001  Sum_probs=85.8

Q ss_pred             CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103            1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR   80 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~   80 (199)
                      |++.+.|.+.|+++.+.+|.|....+. .+.|+-.++..|+     +...++.... ..+  ++.++|     ..+.+.+
T Consensus       335 ~~~~~kv~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-----~~~vl~~~~~-~~~--~~~~~e-----~~~~~~~  400 (495)
T 2vvm_A          335 VSMCTKVHAEVDNKDMRSWTGIAYPFN-KLCYAIGDGTTPA-----GNTHLVCFGN-SAN--HIQPDE-----DVRETLK  400 (495)
T ss_dssp             CCCCEEEEEEESCGGGGGEEEEECSSC-SSCEEEEEEECTT-----SCEEEEEEEC-STT--CCCTTT-----CHHHHHH
T ss_pred             CCceeEEEEEECCccCCCceeEecCCC-CcEEEecCCCCCC-----CCeEEEEEeC-ccc--cCCCHH-----HHHHHHH
Confidence            466778899999876545666555444 4788887766653     2234444332 221  232222     3445544


Q ss_pred             HHhc----cCccCeEEeecccc-cC---cccCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHH
Q 042103           81 LYLA----YQKVHFRSLFILGS-NY---ALPTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAALGGMALANH  144 (199)
Q Consensus        81 ~LL~----l~~p~~~~aHRWr~-~y---A~p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~  144 (199)
                      .|-.    ...|....+|||.+ .|   +.+.-+++.     +.+..+..+|.+||||+.   .+.||+|++||..+|++
T Consensus       401 ~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~  480 (495)
T 2vvm_A          401 AVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARV  480 (495)
T ss_dssp             HHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHH
Confidence            4443    24567778899941 12   222222221     123345679999999986   47899999999999999


Q ss_pred             HHHHhcCCCC
Q 042103          145 IADYLGSGGV  154 (199)
Q Consensus       145 l~~~l~~~~~  154 (199)
                      |++.+.+...
T Consensus       481 i~~~l~~~~~  490 (495)
T 2vvm_A          481 VLEELGTKRE  490 (495)
T ss_dssp             HHHHHCCC--
T ss_pred             HHHHhccccC
Confidence            9999976543

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.22  E-value=5.1e-06  Score=72.22  Aligned_cols=133  Identities=11%  Similarity=-0.022  Sum_probs=78.7

Q ss_pred             ceeecCCCCCCCCCcceeEeCC-CCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHh
Q 042103            5 CCIGGPPPTRQCINFEGAFATG-VDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYL   83 (199)
Q Consensus         5 ~~~~~~f~~~l~~~~dga~v~~-~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL   83 (199)
                      .++.+.|++++. ...+.++.. ...+.++...|.+-......+.+...+|....|.  +.   +. .++..+.+.++|-
T Consensus       282 ~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~--~~---~~-~~~~~~~~~~~l~  354 (425)
T 3ka7_A          282 IKICLAADEPLV-GHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPE--NV---KN-LESEIEMGLEDLK  354 (425)
T ss_dssp             EEEEEEESSCSS-CSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGG--GG---GG-HHHHHHHHHHHHH
T ss_pred             EEEEeecCCCcc-CcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccc--cc---cc-hHHHHHHHHHHHH
Confidence            456777887754 445555543 3347777777766321112234444445443331  11   10 0112334434433


Q ss_pred             c-cC--ccCeEEeecccccCcccCCCCCCCeeeec---CCCeEEEeCCCCC---CchHHHHHHHHHHHHHHH
Q 042103           84 A-YQ--KVHFRSLFILGSNYALPTNTPSVPCIFVP---QGRASICGGWLLA---ASVESAALGGMALANHIA  146 (199)
Q Consensus        84 ~-l~--~p~~~~aHRWr~~yA~p~~~~~~~~l~d~---~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~  146 (199)
                      . ++  .+....+++|+  .+.|....+....-..   -.+|.+||||+.+   -.||+|++||+.++++|+
T Consensus       355 ~~~p~~~~~~~~v~~~~--~~~P~~~~~~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          355 EIFPGKRYEVLLIQSYH--DEWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             HHSTTCCEEEEEEEEEB--TTBCSBSSCTTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             HhCCCCceEEEEEEEEC--CCccccccccCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            3 32  45667899999  9999877664433322   2379999999977   899999999999999886

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.90  E-value=5.2e-05  Score=66.34  Aligned_cols=125  Identities=10%  Similarity=-0.000  Sum_probs=65.5

Q ss_pred             ceeecCCCCCCCCCcceeEe-CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHh
Q 042103            5 CCIGGPPPTRQCINFEGAFA-TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYL   83 (199)
Q Consensus         5 ~~~~~~f~~~l~~~~dga~v-~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL   83 (199)
                      .++.+.++.+. .+-.+.++ .+.. +..+...|.+-.....++...+.++.       ++ |.+. +++..+.+.++|-
T Consensus       270 ~~v~l~~~~~~-~~~~~~~~~~~~~-~~~i~~~s~~~p~~ap~G~~~~~~~~-------~~-~~~~-~~~~~~~~~~~L~  338 (421)
T 3nrn_A          270 IKFNLAVPGEP-RIGNTIVFTPGLM-INGFNEPSALDKSLAREGYTLIMAHM-------AL-KNGN-VKKAIEKGWEELL  338 (421)
T ss_dssp             EEEEEEEESSC-SSCSSEEECTTSS-SCEEECGGGTCGGGSCTTEEEEEEEE-------EC-TTCC-HHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCc-ccCCeEEEcCCcc-eeeEeccCCCCCCcCCCCceEEEEEE-------ee-cccc-HHHHHHHHHHHHH
Confidence            45666666663 22334444 3333 66666666653211112333344433       22 2111 1122444444444


Q ss_pred             c-cCccCeEEeecccccCcccCCCC----CCCeeeecCCCeEEEeCCCCCC-ch--HHHHHHHHHHHHHH
Q 042103           84 A-YQKVHFRSLFILGSNYALPTNTP----SVPCIFVPQGRASICGGWLLAA-SV--ESAALGGMALANHI  145 (199)
Q Consensus        84 ~-l~~p~~~~aHRWr~~yA~p~~~~----~~~~l~d~~~~Lg~CGDW~~G~-rV--E~A~lSG~aLA~~l  145 (199)
                      . ++......++||+  -++|....    ..+  ..+ .+|.+||||+.++ .+  |+|..||+.+|++|
T Consensus       339 ~~~p~~~~~~~~~~~--~~~p~~~~~~~~~~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          339 EIFPEGEPLLAQVYR--DGNPVNRTRAGLHIE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             HHCTTCEEEEEEEC---------------CCC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCeEEEeeecc--CCCCcccccCCCCCC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            4 4444455789999  88887631    122  444 7899999999988 56  99999999999999

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.75  E-value=0.00022  Score=64.46  Aligned_cols=144  Identities=13%  Similarity=0.012  Sum_probs=79.4

Q ss_pred             CCCcceeecCCCCCCCC--CcceeEe--CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103            1 MGPSCCIGGPPPTRQCI--NFEGAFA--TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS   76 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~--~~dga~v--~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e   76 (199)
                      |++.+.+.+.|+++.+.  ++.|..+  .+..++.++-+ ++++.   . +....+.......+++...   ..+++..+
T Consensus       291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d-~~~~~---~-~~~~l~~~~~~~~a~~~~~---~~~~e~~~  362 (520)
T 1s3e_A          291 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLD-DTKPE---G-NYAAIMGFILAHKARKLAR---LTKEERLK  362 (520)
T ss_dssp             BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEE-CCCTT---S-CSCEEEEEEETHHHHHHTT---SCHHHHHH
T ss_pred             CcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEee-CCCCC---C-CCCEEEEEccchhhhhhhc---CCHHHHHH
Confidence            46677889999988642  3445433  33334666554 44442   1 1134444444444433221   00111233


Q ss_pred             HHHHHHhc------cCccCeEEeeccccc-Ccc----cCCCCCC-----CeeeecCCCeEEEeCCC---CCCchHHHHHH
Q 042103           77 RVLRLYLA------YQKVHFRSLFILGSN-YAL----PTNTPSV-----PCIFVPQGRASICGGWL---LAASVESAALG  137 (199)
Q Consensus        77 ~V~~~LL~------l~~p~~~~aHRWr~~-yA~----p~~~~~~-----~~l~d~~~~Lg~CGDW~---~G~rVE~A~lS  137 (199)
                      .+.+.|-.      ...|.....++|..+ |+.    +..+++.     +.+-.+-.+|.+|||++   ..+.||+|++|
T Consensus       363 ~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~S  442 (520)
T 1s3e_A          363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEA  442 (520)
T ss_dssp             HHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHH
T ss_pred             HHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHH
Confidence            44333322      236888889999721 221    1111111     11122335899999986   34589999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 042103          138 GMALANHIADYLGSG  152 (199)
Q Consensus       138 G~aLA~~l~~~l~~~  152 (199)
                      |..+|++|++.+.+.
T Consensus       443 G~~aA~~i~~~l~~~  457 (520)
T 1s3e_A          443 GERAAREILHAMGKI  457 (520)
T ss_dssp             HHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.62  E-value=0.00027  Score=63.08  Aligned_cols=66  Identities=17%  Similarity=0.078  Sum_probs=44.3

Q ss_pred             CccCeEEeeccccc----CcccCCCCCCC-----eeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103           86 QKVHFRSLFILGSN----YALPTNTPSVP-----CIFVPQGRASICGGWLL---AASVESAALGGMALANHIADYLGS  151 (199)
Q Consensus        86 ~~p~~~~aHRWr~~----yA~p~~~~~~~-----~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~  151 (199)
                      +.|....+++|.++    -+.+..+.+..     .+-.+-.+|.+|||++.   ++.||||++||+.+|++|++.+.+
T Consensus       383 ~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~  460 (472)
T 1b37_A          383 PDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  460 (472)
T ss_dssp             CCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            45666678999310    22221222221     12234468999999985   569999999999999999998854

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.43  E-value=0.00017  Score=64.39  Aligned_cols=64  Identities=17%  Similarity=0.090  Sum_probs=50.2

Q ss_pred             ccCeEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103           87 KVHFRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus        87 ~p~~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      .|....++||.  ++.|.-..+..-       ...+-.+|.+||||+.|..||+|+.||..+|++|++.+.+.
T Consensus       426 ~p~~~~~~~w~--~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~~l~~~  496 (504)
T 1sez_A          426 EPTYVNHLYWS--KAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESV  496 (504)
T ss_dssp             CCSSEEEEEEE--EEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCeEEEEeECC--CCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            57888999999  887765443210       11234689999999999999999999999999999998654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.17  E-value=0.0082  Score=56.78  Aligned_cols=138  Identities=14%  Similarity=0.044  Sum_probs=75.5

Q ss_pred             CCCcceeecCCCCCCCCC-cc--eeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCC-cccccchh
Q 042103            1 MGPSCCIGGPPPTRQCIN-FE--GAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKV-PQQRRWKW   73 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~-~d--ga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~-pqe~~~~~   73 (199)
                      ||+...|.+.|+++.+.. .+  |....   +.. .-++--++++.        ...+.......+++-.. +.|    +
T Consensus       485 ~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~-~~~~~~~~~~~--------~vL~~~~~G~~a~~~~~lsde----e  551 (662)
T 2z3y_A          485 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG-ELFLFWNLYKA--------PILLALVAGEAAGIMENISDD----V  551 (662)
T ss_dssp             ECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTT-EEEEEECCSSS--------SEEEEEECTHHHHHHTTSCHH----H
T ss_pred             ccceeEEEEEcCcccccCCCCceeeecCCCCCCC-ceeEEEeCCCC--------CEEEEEeccHhHHHHHhCCHH----H
Confidence            577888999999987642 12  21111   111 22233333321        24455455555554221 111    1


Q ss_pred             hHHHHHH---HHhc---cCccCeEEeeccccc------CcccCCC-CC-------CCe--------eeecCCCeEEEeCC
Q 042103           74 VCSRVLR---LYLA---YQKVHFRSLFILGSN------YALPTNT-PS-------VPC--------IFVPQGRASICGGW  125 (199)
Q Consensus        74 ~~e~V~~---~LL~---l~~p~~~~aHRWr~~------yA~p~~~-~~-------~~~--------l~d~~~~Lg~CGDW  125 (199)
                      ..+.+.+   .++.   .+.|....++||.++      |+..... ..       .|.        ...+..+|.++|++
T Consensus       552 ~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~  631 (662)
T 2z3y_A          552 IVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEH  631 (662)
T ss_dssp             HHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGG
T ss_pred             HHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEecc
Confidence            2233322   3333   346888889999842      2221110 00       010        12233689999998


Q ss_pred             CC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103          126 LL---AASVESAALGGMALANHIADYLGS  151 (199)
Q Consensus       126 ~~---G~rVE~A~lSG~aLA~~l~~~l~~  151 (199)
                      +.   .+-||||++||...|++|++.+..
T Consensus       632 ts~~~~g~v~GAi~SG~raA~~i~~~~~g  660 (662)
T 2z3y_A          632 TIRNYPATVHGALLSGLREAGRIADQFLG  660 (662)
T ss_dssp             GCTTSTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHHHHccC
Confidence            76   378999999999999999998753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.07  E-value=0.0031  Score=56.09  Aligned_cols=139  Identities=13%  Similarity=0.021  Sum_probs=76.4

Q ss_pred             CCCcceeecCCCCCCCC---Ccc-eeEeCCCCcEEEEEecCCCCCCCCCCCCcEEE-EEeChHHHhhcCC-cccccchhh
Q 042103            1 MGPSCCIGGPPPTRQCI---NFE-GAFATGVDSVSWMANNYAKLLSSQSDAPHCWT-SSTLQLYGKRNKV-PQQRRWKWV   74 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~---~~d-ga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WV-lhaTp~wS~~hl~-pqe~~~~~~   74 (199)
                      |++.++|.+.|+++.+.   .+. +....+.+ +..+...|.+..   .+ ....+ .......+++... +.|    +.
T Consensus       317 ~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~-~~~~~~~s~~~~---~~-~~~l~~~~~~g~~~~~~~~~~~~----~~  387 (489)
T 2jae_A          317 PSSSGKLGIEYSRRWWETEDRIYGGASNTDKD-ISQIMFPYDHYN---SD-RGVVVAYYSSGKRQEAFESLTHR----QR  387 (489)
T ss_dssp             CCCEEEEEEEESSCHHHHTTCCCSCEEEESST-TCEEECCSSSTT---SS-CEEEEEEEEETHHHHHHHTSCHH----HH
T ss_pred             CccceEEEEEeCCCCccCCCCcccccccCCCC-ceEEEeCCCCCC---CC-CCEEEEEeeCCchhhhhhcCCHH----HH
Confidence            56778899999887421   222 23344543 667776666542   11 22222 2234444433211 111    12


Q ss_pred             HHHHHHH---Hhcc---CccCeEEeecccccCcccCCC------------CCC-----CeeeecCCCeEEEeCCC--CCC
Q 042103           75 CSRVLRL---YLAY---QKVHFRSLFILGSNYALPTNT------------PSV-----PCIFVPQGRASICGGWL--LAA  129 (199)
Q Consensus        75 ~e~V~~~---LL~l---~~p~~~~aHRWr~~yA~p~~~------------~~~-----~~l~d~~~~Lg~CGDW~--~G~  129 (199)
                      .+.+.+.   ++..   ..|.....++|.  ...-...            ++.     +.+..+..+|.+||+++  .++
T Consensus       388 ~~~~l~~L~~~~~~~~~~~~~~~~~~~W~--~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~~~~~~  465 (489)
T 2jae_A          388 LAKAIAEGSEIHGEKYTRDISSSFSGSWR--RTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSNAIA  465 (489)
T ss_dssp             HHHHHHHHHHHHCGGGGSSEEEEEEEEGG--GSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGGBSSTT
T ss_pred             HHHHHHHHHHHcCcchhhhccccEEEEcC--CCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHhccCcc
Confidence            3333333   2222   245666789998  4311100            110     01112346899999987  478


Q ss_pred             chHHHHHHHHHHHHHHHHHhc
Q 042103          130 SVESAALGGMALANHIADYLG  150 (199)
Q Consensus       130 rVE~A~lSG~aLA~~l~~~l~  150 (199)
                      .||+|++||..+|++|++.+.
T Consensus       466 ~v~gAi~sg~~aA~~i~~~l~  486 (489)
T 2jae_A          466 WQHGALTSARDVVTHIHERVA  486 (489)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999874

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.02  E-value=0.008  Score=48.38  Aligned_cols=120  Identities=14%  Similarity=0.029  Sum_probs=71.5

Q ss_pred             eeEeCCCCcEEEEEecCCCCCCCCCCCC-cEEEEEeChHHHhhc--CCcccccchhhHHHHHHHHhc-----cCccC-eE
Q 042103           21 GAFATGVDSVSWMANNYAKLLSSQSDAP-HCWTSSTLQLYGKRN--KVPQQRRWKWVCSRVLRLYLA-----YQKVH-FR   91 (199)
Q Consensus        21 ga~v~~~~~LsWiA~nsSKpg~~~~~~~-e~WVlhaTp~wS~~h--l~pqe~~~~~~~e~V~~~LL~-----l~~p~-~~   91 (199)
                      +++..+. +|.+|-..|.-..   .++. ..++.....+.+++-  +.++|     ..+.+.+.|-.     + .+. -.
T Consensus        12 g~~~td~-pi~~i~d~S~~~~---~~g~~~~L~~~~~g~~A~~~~~l~~~e-----~~~~~l~~L~~~~g~~~-~~~~~~   81 (181)
T 2e1m_C           12 GGSTTDN-PNRFMYYPSHPVP---GTQGGVVLAAYSWSDDAARWDSFDDAE-----RYGYALENLQSVHGRRI-EVFYTG   81 (181)
T ss_dssp             CEEEESS-TTBEEECCSSCCT---TCSCEEEEEEEEEHHHHHHHTTSCTTT-----THHHHHHHHHHHHCGGG-GGTEEE
T ss_pred             eeEecCC-CeEEEEECCCCcC---CCCCCEEEEEEcCChHHHHHHcCCHHH-----HHHHHHHHHHHHhCCCc-HhhccC
Confidence            5666676 4999988776531   1222 245555556666553  33322     34444443333     3 344 34


Q ss_pred             --Eeeccccc-Ccc---cCCCCCC-----CeeeecCCCeEEEeCCCC--CCchHHHHHHHHHHHHHHHHHhc
Q 042103           92 --SLFILGSN-YAL---PTNTPSV-----PCIFVPQGRASICGGWLL--AASVESAALGGMALANHIADYLG  150 (199)
Q Consensus        92 --~aHRWr~~-yA~---p~~~~~~-----~~l~d~~~~Lg~CGDW~~--G~rVE~A~lSG~aLA~~l~~~l~  150 (199)
                        ..++|.++ |+.   ...+++.     +.+-.+..+|.+||+.+.  .+-||||++||...|++|++.+.
T Consensus        82 ~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~  153 (181)
T 2e1m_C           82 AGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPV  153 (181)
T ss_dssp             EEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC
T ss_pred             cceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence              68999621 221   1111221     122335679999999887  78999999999999999998774

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.80  E-value=0.012  Score=58.14  Aligned_cols=37  Identities=30%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             CCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103          116 QGRASICGGWLL---AASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus       116 ~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      ..+|.++|+++.   .+-||||++||...|++|++.+...
T Consensus       793 ~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~  832 (852)
T 2xag_A          793 IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGA  832 (852)
T ss_dssp             CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhhCC
Confidence            468999999875   4789999999999999999988644

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.71  E-value=0.011  Score=57.58  Aligned_cols=137  Identities=15%  Similarity=0.015  Sum_probs=73.4

Q ss_pred             CCCcceeecCCCCCCCC------CcceeEeC--CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCccccc
Q 042103            1 MGPSCCIGGPPPTRQCI------NFEGAFAT--GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRR   70 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~------~~dga~v~--~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~   70 (199)
                      ||+...|.+.|+++.+-      ++-|....  +...+..+..|.+..+     ....++.....+.+++-  +.+ +  
T Consensus       610 ~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g-----~~~vL~~~i~G~~a~~l~~lsd-e--  681 (776)
T 4gut_A          610 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQK-----KHSVLMSVIAGEAVASVRTLDD-K--  681 (776)
T ss_dssp             EECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTS-----CSCEEEEEECTHHHHHHHTSCH-H--
T ss_pred             CeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCCCCC-----CceEEEEEecchhHHHHHcCCH-H--
Confidence            35667788999988653      11111111  1111333334444332     12345555566655542  212 1  


Q ss_pred             chhhHHHHHHHH---hc---cCccCeEEeeccccc------CcccCCC-CC--CCeeeec-CCCeEEEeCCCC---CCch
Q 042103           71 WKWVCSRVLRLY---LA---YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP-QGRASICGGWLL---AASV  131 (199)
Q Consensus        71 ~~~~~e~V~~~L---L~---l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~-~~~Lg~CGDW~~---G~rV  131 (199)
                        +..+.+.+.|   +.   .+.|....+++|.++      |+.+... ..  ...+..+ ..+|.++|++..   .+-|
T Consensus       682 --el~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtv  759 (776)
T 4gut_A          682 --QVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTV  759 (776)
T ss_dssp             --HHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSH
T ss_pred             --HHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCH
Confidence              1233333333   32   346888899999821      1111110 00  0011112 578999999986   4789


Q ss_pred             HHHHHHHHHHHHHHHH
Q 042103          132 ESAALGGMALANHIAD  147 (199)
Q Consensus       132 E~A~lSG~aLA~~l~~  147 (199)
                      |||++||...|++|++
T Consensus       760 eGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          760 TGAYLSGVREASKIAA  775 (776)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999975

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.70  E-value=0.0069  Score=53.96  Aligned_cols=141  Identities=13%  Similarity=0.003  Sum_probs=74.3

Q ss_pred             CCCcceeecCCCCCCCCC---cceeEeCCCCcEEEEEecCC-CCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103            1 MGPSCCIGGPPPTRQCIN---FEGAFATGVDSVSWMANNYA-KLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS   76 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~~~LsWiA~nsS-Kpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e   76 (199)
                      |++.+.|.+.|+++.+..   +.+....+.+ +.++...+. .|.     +..+.+.....+.++...   ...+++..+
T Consensus       321 ~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~s~~~p~-----g~~~L~~~~~g~~a~~~~---~~~~~~~~~  391 (498)
T 2iid_A          321 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLP-SRFIYYPNHNFTN-----GVGVIIAYGIGDDANFFQ---ALDFKDCAD  391 (498)
T ss_dssp             EECEEEEEEEESSCGGGGGTCCSSEEEESST-TCEEECCSSCCTT-----SCEEEEEEEEHHHHHTTT---TSCHHHHHH
T ss_pred             CcceeEEEEEeCCCCccCCCccCCcccCCCC-cceEEECCCCCCC-----CCcEEEEEeCCccHhhhh---cCCHHHHHH
Confidence            467788889998885422   1233333433 456655442 232     233455544444443321   010111233


Q ss_pred             HHHHHHhc---cCcc------CeEEeeccccc-C---cccCCCCCC-----CeeeecCCCeEEEeCCCC--CCchHHHHH
Q 042103           77 RVLRLYLA---YQKV------HFRSLFILGSN-Y---ALPTNTPSV-----PCIFVPQGRASICGGWLL--AASVESAAL  136 (199)
Q Consensus        77 ~V~~~LL~---l~~p------~~~~aHRWr~~-y---A~p~~~~~~-----~~l~d~~~~Lg~CGDW~~--G~rVE~A~l  136 (199)
                      .+.+.|-.   ++.+      .....++|.++ |   +.....++.     +.+..+..+|.+||+++.  .+-||+|++
T Consensus       392 ~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~g~~~GAi~  471 (498)
T 2iid_A          392 IVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIK  471 (498)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHH
T ss_pred             HHHHHHHHHcCCChhhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCCcCHHHHHH
Confidence            33333322   2211      23568999821 1   110011110     012234568999999873  368999999


Q ss_pred             HHHHHHHHHHHHhc
Q 042103          137 GGMALANHIADYLG  150 (199)
Q Consensus       137 SG~aLA~~l~~~l~  150 (199)
                      ||+.+|++|++.+.
T Consensus       472 SG~raA~~i~~~l~  485 (498)
T 2iid_A          472 SGLRAARDVNLASE  485 (498)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999885

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.39  E-value=0.023  Score=50.34  Aligned_cols=34  Identities=15%  Similarity=0.024  Sum_probs=27.3

Q ss_pred             CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhc
Q 042103          117 GRASICGGWLL-AASVESAALGGMALANHIADYLG  150 (199)
Q Consensus       117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~  150 (199)
                      .+|++||||.. |+.|++|.+||+.+|++|++.|.
T Consensus       458 ~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~  492 (501)
T 4dgk_A          458 TNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI  492 (501)
T ss_dssp             TTEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            57999999986 67899999999999999999985

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=91.83  E-value=0.25  Score=42.61  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             eeeecCCCeEEEe-CCCC--CCchHHHHHHHHHHHHHHHHH
Q 042103          111 CIFVPQGRASICG-GWLL--AASVESAALGGMALANHIADY  148 (199)
Q Consensus       111 ~l~d~~~~Lg~CG-DW~~--G~rVE~A~lSG~aLA~~l~~~  148 (199)
                      .+..+..+|.++| ++..  .+-||||++||...|++|+-.
T Consensus       385 ~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          385 ELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             GGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            3445678999999 5542  378999999999999999853

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=91.30  E-value=0.16  Score=45.78  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=32.7

Q ss_pred             cCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103          115 PQGRASICGGWLL---AASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus       115 ~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      +..+|.+||+.+.   .+-||||++||...|++|++.+.+.
T Consensus       470 ~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~  510 (516)
T 1rsg_A          470 QDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE  510 (516)
T ss_dssp             SSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhh
Confidence            4679999999874   4789999999999999999988543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=91.19  E-value=0.11  Score=44.95  Aligned_cols=30  Identities=7%  Similarity=0.014  Sum_probs=27.9

Q ss_pred             CCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103          117 GRASICGGWLLAASVESAALGGMALANHIA  146 (199)
Q Consensus       117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~  146 (199)
                      .+|.+||+|+.-+-.|+|+.||+.+|++|+
T Consensus       394 ~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          394 RNTFYAGEIMSFGNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             GGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred             CCceEeccccccccHHHHHHHHHHHHHHhc
Confidence            479999999998999999999999999875

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=90.79  E-value=0.18  Score=45.58  Aligned_cols=133  Identities=9%  Similarity=-0.027  Sum_probs=75.2

Q ss_pred             ceeecCCCCCCC---CCcceeEeCCCC-cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103            5 CCIGGPPPTRQC---INFEGAFATGVD-SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR   80 (199)
Q Consensus         5 ~~~~~~f~~~l~---~~~dga~v~~~~-~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~   80 (199)
                      -+|.+.|+.+..   .+..++.+.+.+ .+.++..-++|-. . ......|++...-.++ ...   +...++..+.+.+
T Consensus       299 ~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p-~-~ap~g~~~l~~e~~~~-~~~---~~~d~~l~~~a~~  372 (484)
T 4dsg_A          299 NVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSK-Y-NVPEGHWSLMLEVSES-KYK---PVNHSTLIEDCIV  372 (484)
T ss_dssp             EEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCG-G-GSCTTEEEEEEEEEEB-TTB---CCCTTSHHHHHHH
T ss_pred             EEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCc-c-cCCCCeEEEEEEEecC-cCC---cCCHHHHHHHHHH
Confidence            356667776532   234556665532 3566776666631 0 2122356554322111 111   0011123445555


Q ss_pred             HHhcc--C---ccC-eEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeC---CCCC-CchHHHHHHHHHHHH
Q 042103           81 LYLAY--Q---KVH-FRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGG---WLLA-ASVESAALGGMALAN  143 (199)
Q Consensus        81 ~LL~l--~---~p~-~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGD---W~~G-~rVE~A~lSG~aLA~  143 (199)
                      +|..+  .   .+. ...++||.  ++.|....+..-       ..... +|.+||.   |-.+ ..++.|+.||+.+|+
T Consensus       373 ~L~~~~~~~~~~~~~~~~v~r~~--~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~  449 (484)
T 4dsg_A          373 GCLASNLLLPEDLLVSKWHYRIE--KGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAID  449 (484)
T ss_dssp             HHHHTTSCCTTCCEEEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccceEEEEEEEEeC--ccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHH
Confidence            55442  1   232 35689999  999988865220       11223 8999999   6666 589999999999999


Q ss_pred             HHH
Q 042103          144 HIA  146 (199)
Q Consensus       144 ~l~  146 (199)
                      .|+
T Consensus       450 ~i~  452 (484)
T 4dsg_A          450 HVL  452 (484)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            997

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=82.36  E-value=0.63  Score=40.87  Aligned_cols=72  Identities=11%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             hHHHHHHHHhc------cCccCeEEeecccccCcccCCCCCCC----eeee--cCCCeEEEeC---CCC-CCchHHHHHH
Q 042103           74 VCSRVLRLYLA------YQKVHFRSLFILGSNYALPTNTPSVP----CIFV--PQGRASICGG---WLL-AASVESAALG  137 (199)
Q Consensus        74 ~~e~V~~~LL~------l~~p~~~~aHRWr~~yA~p~~~~~~~----~l~d--~~~~Lg~CGD---W~~-G~rVE~A~lS  137 (199)
                      ..+.+.++|..      -+.+....++||.  ||.|.-..+..    -+.+  ...+|..||.   |=- .+..+.|++|
T Consensus       390 l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~--~ayP~y~~~~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~~~  467 (513)
T 4gde_A          390 ILADCIQGLVNTEMLKPTDEIVSTYHRRFD--HGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFML  467 (513)
T ss_dssp             HHHHHHHHHHHTTSSCTTCEEEEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccceEEEEEEECC--CeecccCHhHHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHHHH
Confidence            45555566655      1235678899999  99998665421    0110  1258999995   422 2478999999


Q ss_pred             HHHHHHHHHH
Q 042103          138 GMALANHIAD  147 (199)
Q Consensus       138 G~aLA~~l~~  147 (199)
                      |+.+|+.|++
T Consensus       468 g~~aa~~I~~  477 (513)
T 4gde_A          468 GVEAVDNIVN  477 (513)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.06
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.01
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.11
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.33
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	87.23

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.61  E-value=2.7e-05  Score=58.76  Aligned_cols=37  Identities=24%  Similarity=0.133  Sum_probs=34.1

Q ss_pred             CCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103          116 QGRASICGGWLLAASVESAALGGMALANHIADYLGSG  152 (199)
Q Consensus       116 ~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~~  152 (199)
                      ..+|++||||+.|.+|+.|+.||+.+|++|+++|.+.
T Consensus       336 ~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~  372 (373)
T d1seza1         336 LPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESV  372 (373)
T ss_dssp             STTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEecCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            3579999999999999999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.06  E-value=0.00016  Score=52.50  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             ecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103          114 VPQGRASICGGWLL---AASVESAALGGMALANHIADYLGS  151 (199)
Q Consensus       114 d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~  151 (199)
                      .+..+|.+||||+.   .+.||+|+.||+.+|+.|++++++
T Consensus       304 ~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         304 APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             CCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            34568999999975   478999999999999999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00028  Score=53.24  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             ecCCCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHh
Q 042103          114 VPQGRASICGGWLLA---ASVESAALGGMALANHIADYL  149 (199)
Q Consensus       114 d~~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l  149 (199)
                      .+..+|.+||||...   +-||||++||+.+|++|++++
T Consensus       409 ~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~~  447 (449)
T d2dw4a2         409 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  447 (449)
T ss_dssp             -CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHHh
Confidence            445689999998752   569999999999999999876

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.11  E-value=0.0058  Score=46.94  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             eeecCCCeEEEeCCCCCCc--hHHHHHHHHHHHHHHHHH
Q 042103          112 IFVPQGRASICGGWLLAAS--VESAALGGMALANHIADY  148 (199)
Q Consensus       112 l~d~~~~Lg~CGDW~~G~r--VE~A~lSG~aLA~~l~~~  148 (199)
                      ++.+..++.++||++..+.  ||+|+.||+.+|..|...
T Consensus       329 ~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         329 LTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             HHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHHhh
Confidence            4445678999999987654  999999999999999753

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.35  Score=32.62  Aligned_cols=87  Identities=8%  Similarity=-0.051  Sum_probs=52.0

Q ss_pred             CCCcceeecCCCCCCCC--CcceeEeCCC--CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCcccccchhh
Q 042103            1 MGPSCCIGGPPPTRQCI--NFEGAFATGV--DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRRWKWV   74 (199)
Q Consensus         1 ~~~~~~~~~~f~~~l~~--~~dga~v~~~--~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~~~~~   74 (199)
                      ||..|-|.+.|+++-+-  ++.|..+.++  ..+.++-.++ ++    ..+..+.+...+.+.|++-  +.++|     .
T Consensus         2 mG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~-~~----~~~~~vL~~~~~G~~a~~~~~ls~~e-----~   71 (112)
T d2v5za2           2 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDT-KP----EGNYAAIMGFILAHKARKLARLTKEE-----R   71 (112)
T ss_dssp             BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECC-CT----TSCSCEEEEEEETHHHHHHTTSCHHH-----H
T ss_pred             chheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCc-Cc----cCCCcEEEEEeCcHHHHHHHhCCHHH-----H
Confidence            89999999999999774  3334334332  2345555544 43    2233478888889888764  32222     2


Q ss_pred             HHHHHHHHhc------cCccCeEEeeccc
Q 042103           75 CSRVLRLYLA------YQKVHFRSLFILG   97 (199)
Q Consensus        75 ~e~V~~~LL~------l~~p~~~~aHRWr   97 (199)
                      .+.+.+.|-.      ++.|.-...++|.
T Consensus        72 ~~~~l~~L~~~~g~~~~~~~~~~~~~~W~  100 (112)
T d2v5za2          72 LKKLCELYAKVLGSLEALEPVHYEEKNWC  100 (112)
T ss_dssp             HHHHHHHHHHHHTCGGGGCCSEEEEEEGG
T ss_pred             HHHHHHHHHHHhCccccCCccEEEEcccC
Confidence            3333332222      4467777889998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=87.23  E-value=0.16  Score=37.33  Aligned_cols=30  Identities=10%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             CCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103          117 GRASICGGWLLAASVESAALGGMALANHIA  146 (199)
Q Consensus       117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~  146 (199)
                      .++.+|||++.|-.+..|..+|..+|++|.
T Consensus       317 p~~~~~G~~~~g~~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         317 PGLHLIGNAYKGVGLNDCIRNAAQLADALV  346 (347)
T ss_dssp             TTEEECSTTTSCCSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEecccccCCCHHHHHHHHHHHHHHhh
Confidence            368999999999999999999999999985