Citrus Sinensis ID: 042108

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
MGKQELPQPEELEAIEEETEEEGGGGGYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
cccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEcccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccEEEccccccccccccccHHHHHHHcccEEEEEEEEEccHHHHHHHHHHcccccccEEcccccccccHHHHcccccccccHHHHHHcccccccccEEEEEcccccccccEEcccccccEEEEEEEEEEEEEEcccccccccccccccccccccccccHHcccccccccccccccEEEEEccccEEEEccccEEEEEEccccEEEEEEEcc
cccccccccEEEEEccccccccccccccccccccccccccccccccHHcccccHHHHHHHcccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEcccHHHHHHHHcccccccccccccccccccccccHHccccHHHHcccccccccccccccccccccHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHcccEEEEccEEccHHHHHHHHHHccccccEEEEcHHHHHHcHHHHHHcccccccHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEEEccEEEEEccccccccccEEccccccccccHHHHHHHHHHcccccccccccEEEEEccccEEEEccccEEEEEEccccEEEEEcccc
mgkqelpqpeelEAIEeeteeegggggynlkssapsnthgvqplgnlyfnpgsvnsrntglgnlqtlTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLaldnlkgefmfngswkstfvsacypsfdvgkvnvdgclrvrdfYSDYLFQSWLCanlemkpewlerdniarkKCISVEEFvssfeepnkpvllegCLDNWAALKKWDRDYLVNVCGdvrfavgpveMKLEEYFRYsdsvreerplylfdpkfadkvptlggeyevpvyFREDLFSvlgnerpdyrwviigpagsgssfhmdpnstsAWNAIIKGSkkwilfppdvvppgvhpssdgaevacpVSIMEWFMNFYGATKNWKKRPIECICKagevifvpngWWHLVINLEESIAITQNYVS
mgkqelpqpeELEAIEEETEEEGGGGGYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFvssfeepnkpvLLEGCLDNWAALKKWDRDYLVNVCGDVrfavgpvemKLEEYFRYSDSVREERPlylfdpkfadkvptLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIaitqnyvs
MGKQELPQPeeleaieeeteeegggggYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCIsveefvssfeePNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
*******************************************LGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGS**********TSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQ****
**************************************HGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDV******GCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
*********EELEAI***********GYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
********PEELEAIEE*********GYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKQELPQPEELEAIEEETEEEGGGGGYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query406 2.2.26 [Sep-21-2011]
Q67XX3502 F-box protein At5g06550 O yes no 0.980 0.792 0.759 0.0
Q9M9E8 943 F-box protein At1g78280 O no no 0.859 0.370 0.374 1e-65
Q9VD28 408 Bifunctional arginine dem yes no 0.598 0.595 0.402 1e-47
Q6Q4H1385 Bifunctional arginine dem N/A no 0.554 0.584 0.381 8e-46
Q6PFM0 403 Bifunctional arginine dem yes no 0.573 0.578 0.393 6e-45
Q9GYI4 400 Bifunctional arginine dem yes no 0.564 0.572 0.399 2e-44
Q6GND3 403 Bifunctional arginine dem N/A no 0.573 0.578 0.385 6e-44
Q5R6G2 403 Bifunctional arginine dem yes no 0.571 0.575 0.391 2e-43
Q6NYC1 403 Bifunctional arginine dem yes no 0.571 0.575 0.391 2e-43
Q58DS6 403 Bifunctional arginine dem yes no 0.571 0.575 0.387 8e-43
>sp|Q67XX3|FB252_ARATH F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 Back     alignment and function desciption
 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/399 (75%), Positives = 344/399 (86%), Gaps = 1/399 (0%)

Query: 8   QPEELEAIEEETEEEGGGGGYNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTL 67
           +PE L   +E  EE+   GG+ LK +APS  HGVQPLGNLYFNPG+VN RNTGLGNLQ L
Sbjct: 27  EPESLFPEKEVEEEDEDEGGFKLKIAAPSQEHGVQPLGNLYFNPGAVNVRNTGLGNLQIL 86

Query: 68  TDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFV 127
           +DELV+D+LG L A  LGVLATV+KSFY+FANHEPLWRNL L+ LKG+F+FNGSW+ST+V
Sbjct: 87  SDELVLDILGLLGANHLGVLATVTKSFYIFANHEPLWRNLVLEELKGDFLFNGSWRSTYV 146

Query: 128 SACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEF 187
           +A +P F     + +  L++ DFYSDYLFQSWLCANLEMKP+WL RDNI R + ISVE+F
Sbjct: 147 AAYHPKFKFAG-DGESNLKIIDFYSDYLFQSWLCANLEMKPKWLRRDNITRVRGISVEDF 205

Query: 188 VSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVR 247
           ++ FEEPNKPVLLEGCLD W A++KW RDYL  V GDV FAVGPVEMKLE+YFRYSD  R
Sbjct: 206 ITKFEEPNKPVLLEGCLDGWPAIEKWSRDYLTKVVGDVEFAVGPVEMKLEKYFRYSDGAR 265

Query: 248 EERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHM 307
           EERPLYLFDPKFA+KVP L  EY+VPVYFREDLF VLGNERPDYRW+IIGPAGSGSSFH+
Sbjct: 266 EERPLYLFDPKFAEKVPVLDSEYDVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHI 325

Query: 308 DPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWK 367
           DPNSTSAWNA+I GSKKW+LFPPDVVPPGVHPS DGAEVACPVSI+EWFMNFY  TK+W+
Sbjct: 326 DPNSTSAWNAVITGSKKWVLFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYDDTKDWE 385

Query: 368 KRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
           K+PIECICKAGEV+FVPNGWWHLVINLEESIAITQNY S
Sbjct: 386 KKPIECICKAGEVMFVPNGWWHLVINLEESIAITQNYAS 424

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M9E8|FB92_ARATH F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3 Back     alignment and function description
>sp|Q9VD28|JMJD6_DROME Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Drosophila melanogaster GN=PSR PE=2 SV=1 Back     alignment and function description
>sp|Q6Q4H1|JMJD6_HYDVU Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris GN=PSR PE=1 SV=1 Back     alignment and function description
>sp|Q6PFM0|JMJD6_DANRE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio GN=jmjd6 PE=2 SV=2 Back     alignment and function description
>sp|Q9GYI4|JMJD6_CAEEL Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis elegans GN=psr-1 PE=1 SV=2 Back     alignment and function description
>sp|Q6GND3|JMD6A_XENLA Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis GN=jmjd6-a PE=2 SV=1 Back     alignment and function description
>sp|Q5R6G2|JMJD6_PONAB Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Pongo abelii GN=JMJD6 PE=2 SV=1 Back     alignment and function description
>sp|Q6NYC1|JMJD6_HUMAN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1 Back     alignment and function description
>sp|Q58DS6|JMJD6_BOVIN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Bos taurus GN=JMJD6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
255566233 810 transferase, transferring glycosyl group 0.933 0.467 0.816 0.0
356572682 507 PREDICTED: F-box protein At5g06550-like 0.933 0.747 0.828 0.0
449514803 512 PREDICTED: F-box protein At5g06550-like 0.958 0.759 0.794 0.0
449437518 512 PREDICTED: F-box protein At5g06550-like 0.958 0.759 0.794 0.0
225439323 507 PREDICTED: F-box protein At5g06550 [Viti 0.943 0.755 0.790 0.0
297810763502 hypothetical protein ARALYDRAFT_487465 [ 0.980 0.792 0.771 0.0
356503873 639 PREDICTED: LOW QUALITY PROTEIN: F-box pr 0.933 0.593 0.792 0.0
79507493502 uncharacterized protein [Arabidopsis tha 0.980 0.792 0.759 0.0
10178111425 unnamed protein product [Arabidopsis tha 0.980 0.936 0.759 1e-180
449514805425 PREDICTED: F-box protein At5g06550-like 0.916 0.875 0.765 1e-172
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/381 (81%), Positives = 349/381 (91%), Gaps = 2/381 (0%)

Query: 27  GYNLKSSAPSNT-HGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLG 85
           G++LK+SAPS+  +GVQPLGNLY NPGS+NSRNTGLGNL TLTDELV+D+LG LD T LG
Sbjct: 56  GFSLKNSAPSHIFYGVQPLGNLYLNPGSINSRNTGLGNLHTLTDELVLDILGLLDGTHLG 115

Query: 86  VLATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCL 145
           +LATVSKSFYVFANHEPLWRNL LDNL G F+FNGSWK T++S+  PSFDV  + +   L
Sbjct: 116 ILATVSKSFYVFANHEPLWRNLVLDNLNGAFLFNGSWKLTYISSFSPSFDVSCMRISN-L 174

Query: 146 RVRDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLD 205
           RVRDFYSDY+FQSWLCANLEMKPEWLERDNI RKK ISVEEFVS+FEEPNKPVLLEGC+D
Sbjct: 175 RVRDFYSDYIFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVSNFEEPNKPVLLEGCMD 234

Query: 206 NWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPT 265
           NWAA   WDRDYLV +CGDV+FAVGPVEM+L+EYFRY+D VREERPLYLFDPKFA+KVP+
Sbjct: 235 NWAAFHNWDRDYLVRICGDVKFAVGPVEMRLKEYFRYADQVREERPLYLFDPKFAEKVPS 294

Query: 266 LGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKW 325
           LG +Y+VP+YFREDLF VLG+ERPDYRW+I+GPAGSGSSFH+DPNSTSAWNA+IKGSKKW
Sbjct: 295 LGSDYKVPMYFREDLFGVLGSERPDYRWIIVGPAGSGSSFHIDPNSTSAWNAVIKGSKKW 354

Query: 326 ILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPN 385
           ILFPPDV+P GVHPS DG EVACPVSI+EWFMNFY ATK+WKKRPIEC+CKAGEVIFVPN
Sbjct: 355 ILFPPDVIPSGVHPSPDGTEVACPVSIIEWFMNFYDATKDWKKRPIECVCKAGEVIFVPN 414

Query: 386 GWWHLVINLEESIAITQNYVS 406
           GWWHLVINLEES+AITQNYVS
Sbjct: 415 GWWHLVINLEESVAITQNYVS 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572682|ref|XP_003554495.1| PREDICTED: F-box protein At5g06550-like [Glycine max] Back     alignment and taxonomy information
>gi|449514803|ref|XP_004164484.1| PREDICTED: F-box protein At5g06550-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437518|ref|XP_004136539.1| PREDICTED: F-box protein At5g06550-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225439323|ref|XP_002269129.1| PREDICTED: F-box protein At5g06550 [Vitis vinifera] gi|147840343|emb|CAN75104.1| hypothetical protein VITISV_019348 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810763|ref|XP_002873265.1| hypothetical protein ARALYDRAFT_487465 [Arabidopsis lyrata subsp. lyrata] gi|297319102|gb|EFH49524.1| hypothetical protein ARALYDRAFT_487465 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356503873|ref|XP_003520725.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g06550-like [Glycine max] Back     alignment and taxonomy information
>gi|79507493|ref|NP_196273.3| uncharacterized protein [Arabidopsis thaliana] gi|75116543|sp|Q67XX3.1|FB252_ARATH RecName: Full=F-box protein At5g06550 gi|51968946|dbj|BAD43165.1| putative protein [Arabidopsis thaliana] gi|51971587|dbj|BAD44458.1| putative protein [Arabidopsis thaliana] gi|332003650|gb|AED91033.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10178111|dbj|BAB11404.1| unnamed protein product [Arabidopsis thaliana] gi|46518445|gb|AAS99704.1| At5g06550 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449514805|ref|XP_004164485.1| PREDICTED: F-box protein At5g06550-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
TAIR|locus:2144153502 AT5G06550 "AT5G06550" [Arabido 0.931 0.752 0.759 1.4e-165
DICTYBASE|DDB_G0280485 536 jcdH "transcription factor jum 0.790 0.598 0.429 1.5e-85
UNIPROTKB|G4MKL9505 MGG_04401 "F-box and JmjC doma 0.896 0.720 0.391 1.2e-65
TAIR|locus:2032090 943 AT1G78280 [Arabidopsis thalian 0.859 0.370 0.368 1.9e-62
DICTYBASE|DDB_G0270006 983 jcdI "transcription factor jum 0.859 0.355 0.343 5.3e-55
CGD|CAL0000230 552 orf19.551 [Candida albicans (t 0.492 0.362 0.430 1.6e-51
UNIPROTKB|Q5A6K3 552 CaO19.551 "Putative uncharacte 0.492 0.362 0.430 1.6e-51
FB|FBgn0038948 408 PSR "phosphatidylserine recept 0.593 0.590 0.385 5.6e-45
UNIPROTKB|Q6Q4H1385 PSR "Bifunctional arginine dem 0.573 0.605 0.369 7.3e-43
ZFIN|ZDB-GENE-040426-17 403 jmjd6 "jumonji domain containi 0.522 0.526 0.393 5.9e-41
TAIR|locus:2144153 AT5G06550 "AT5G06550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
 Identities = 288/379 (75%), Positives = 323/379 (85%)

Query:    28 YNLKSSAPSNTHGVQPLGNLYFNPGSVNSRNTGLGNLQTLTDELVIDVLGFLDATQLGVL 87
             + LK +APS  HGVQPLGNLYFNPG+VN RNTGLGNLQ L+DELV+D+LG L A  LGVL
Sbjct:    47 FKLKIAAPSQEHGVQPLGNLYFNPGAVNVRNTGLGNLQILSDELVLDILGLLGANHLGVL 106

Query:    88 ATVSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRV 147
             ATV+KSFY+FANHEPLWRNL L+ LKG+F+FNGSW+ST+V+A +P F     + +  L++
Sbjct:   107 ATVTKSFYIFANHEPLWRNLVLEELKGDFLFNGSWRSTYVAAYHPKFKFAG-DGESNLKI 165

Query:   148 RDFYSDYLFQSWLCANLEMKPEWLERDNIARKKCIXXXXXXXXXXXPNKPVLLEGCLDNW 207
              DFYSDYLFQSWLCANLEMKP+WL RDNI R + I           PNKPVLLEGCLD W
Sbjct:   166 IDFYSDYLFQSWLCANLEMKPKWLRRDNITRVRGISVEDFITKFEEPNKPVLLEGCLDGW 225

Query:   208 AALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLG 267
              A++KW RDYL  V GDV FAVGPVEMKLE+YFRYSD  REERPLYLFDPKFA+KVP L 
Sbjct:   226 PAIEKWSRDYLTKVVGDVEFAVGPVEMKLEKYFRYSDGAREERPLYLFDPKFAEKVPVLD 285

Query:   268 GEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWIL 327
              EY+VPVYFREDLF VLGNERPDYRW+IIGPAGSGSSFH+DPNSTSAWNA+I GSKKW+L
Sbjct:   286 SEYDVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVITGSKKWVL 345

Query:   328 FPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGW 387
             FPPDVVPPGVHPS DGAEVACPVSI+EWFMNFY  TK+W+K+PIECICKAGEV+FVPNGW
Sbjct:   346 FPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYDDTKDWEKKPIECICKAGEVMFVPNGW 405

Query:   388 WHLVINLEESIAITQNYVS 406
             WHLVINLEESIAITQNY S
Sbjct:   406 WHLVINLEESIAITQNYAS 424
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007166 "cell surface receptor signaling pathway" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
DICTYBASE|DDB_G0280485 jcdH "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4MKL9 MGG_04401 "F-box and JmjC domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2032090 AT1G78280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270006 jcdI "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000230 orf19.551 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A6K3 CaO19.551 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
FB|FBgn0038948 PSR "phosphatidylserine receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Q4H1 PSR "Bifunctional arginine demethylase and lysyl-hydroxylase PSR" [Hydra vulgaris (taxid:6087)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-17 jmjd6 "jumonji domain containing 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q67XX3FB252_ARATHNo assigned EC number0.75930.98020.7928yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691
4th Layer1.14.11.27LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027131001
SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_41, whole genome shotgun sequence); (507 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •    0.491
GSVIVG00009477001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (335 aa)
      • 0.451
GSVIVG00026943001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)
    •   0.412
GSVIVG00001542001
SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (207 aa)
   •    0.410
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
pfam13621247 pfam13621, Cupin_8, Cupin-like domain 1e-21
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 1e-10
pfam1293747 pfam12937, F-box-like, F-box-like 3e-07
>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain Back     alignment and domain information 
 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 44/252 (17%)

Query: 185 EEFVSSFEEPNKPVLLEGCLDNWAALKKWD--RDYLVNVCGD--VRFAVGP--------- 231
           EEF   +    KPV+L+G   +W A+KKW    DYL    GD  V   V P         
Sbjct: 2   EEFFREYVAKRKPVVLKGAAKDWPAVKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFFY 61

Query: 232 -----------VEMKLEEY---FRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFR 277
                        M  +++    R          LYL       + P L  + ++P    
Sbjct: 62  NDDLSGVNFKEERMPFKDFLDLLRAGSDQETPPYLYLQSSNLDSEFPGLREDNDLP--LA 119

Query: 278 EDLFSVLGNERPDYR-WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-- 334
            + F   G        W  IG  G+ +S H D         ++ G K++ LFPP  VP  
Sbjct: 120 PEAF---GKLPQAVNLW--IGNGGTTTSLHYDA--YENLYCVVSGRKRFTLFPPSQVPNL 172

Query: 335 -PGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN 393
            PG    + G   +  V      +  +   +    + +    + G+ +++P GWWH V +
Sbjct: 173 YPGPLDRTGGQPFS-LVDPDNPDLEKF--PRFKDAKALVAELEPGDALYIPAGWWHHVRS 229

Query: 394 LEE-SIAITQNY 404
           L++ +IA+   +
Sbjct: 230 LDDFNIAVNYWF 241

This cupin like domain shares similarity to the JmjC domain. Length = 247
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 406
KOG2130 407 consensus Phosphatidylserine-specific receptor Ptd 100.0
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 100.0
KOG2132355 consensus Uncharacterized conserved protein, conta 99.97
KOG2131 427 consensus Uncharacterized conserved protein, conta 99.94
KOG2508 437 consensus Predicted phospholipase [Lipid transport 99.91
PF08007 319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 99.65
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.53
COG2850 383 Uncharacterized conserved protein [Function unknow 99.53
KOG2997366 consensus F-box protein FBX9 [General function pre 99.37
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.23
KOG3706 629 consensus Uncharacterized conserved protein [Funct 99.2
KOG1356889 consensus Putative transcription factor 5qNCA, con 99.14
KOG1633 776 consensus F-box protein JEMMA and related proteins 99.11
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.63
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.53
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.77
COG2140209 Thermophilic glucose-6-phosphate isomerase and rel 97.4
KOG3926332 consensus F-box proteins [Amino acid transport and 97.38
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.21
smart0055857 JmjC A domain family that is part of the cupin met 97.12
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 96.81
PF06881109 Elongin_A: RNA polymerase II transcription factor 96.8
TIGR03037159 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase 96.46
PRK13264177 3-hydroxyanthranilate 3,4-dioxygenase; Provisional 96.26
PF06560182 GPI: Glucose-6-phosphate isomerase (GPI); InterPro 96.11
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 95.86
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 95.78
PRK04190191 glucose-6-phosphate isomerase; Provisional 95.63
PF06052151 3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte 95.39
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 94.94
COG1917131 Uncharacterized conserved protein, contains double 94.72
KOG4341483 consensus F-box protein containing LRR [General fu 94.49
KOG2132355 consensus Uncharacterized conserved protein, conta 94.39
TIGR03404 367 bicupin_oxalic bicupin, oxalate decarboxylase fami 94.33
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 94.18
smart00835146 Cupin_1 Cupin. This family represents the conserve 93.17
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 92.56
PRK13290125 ectC L-ectoine synthase; Reviewed 92.39
PF05523131 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 92.19
TIGR02272 335 gentisate_1_2 gentisate 1,2-dioxygenase. This fami 92.1
PF02041167 Auxin_BP: Auxin binding protein; InterPro: IPR0005 91.95
PF13013109 F-box-like_2: F-box-like domain 90.84
PLN00212493 glutelin; Provisional 89.81
TIGR01221176 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en 89.18
KOG4408386 consensus Putative Mg2+ and Co2+ transporter CorD 86.2
TIGR02466201 conserved hypothetical protein. This family consis 85.04
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 84.75
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 84.68
COG1898173 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela 83.38
PRK15457233 ethanolamine utilization protein EutQ; Provisional 83.35
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 82.61
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-67  Score=492.48  Aligned_cols=285  Identities=45%  Similarity=0.885  Sum_probs=262.3

Q ss_pred             HhHHHHHhcCChhHHHHHHHhhccCCcccCCchHHHHhhhccCCccCCCccccccceecCccchhhhhhhhhhcccCCcC
Q 042108           90 VSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPE  169 (406)
Q Consensus        90 ~~r~~y~~~~~d~lWr~~~~~~~~~~~~~~gsWr~t~~~~~~~~~~~~~~~~~~~~~~~~~~sd~l~~~~~c~~~~~~~~  169 (406)
                      |+..+|.+|+++.+||.+++++..+.+          +                    .+ +||.||+.|+|+...+.+.
T Consensus         1 vs~~~y~~~n~~~~kr~~~~kr~arpe----------l--------------------~~-~~~w~~~~y~e~f~~~~~~   49 (407)
T KOG2130|consen    1 VSSSMYILCNHEPLKRSLELKRKARPE----------L--------------------YK-MSDWLYKRYYESFTLLDPF   49 (407)
T ss_pred             CccceeeecCcchHHHHHHHHHhcChh----------h--------------------hh-hhhHHHHHHHHhccccCcc
Confidence            456789999999999999987643322          1                    11 7999999999999998888


Q ss_pred             cccCCCccccCCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcc------eecchHHHHHhh
Q 042108          170 WLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGP------VEMKLEEYFRYS  243 (406)
Q Consensus       170 ~~~~~~I~r~~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~------~~~~l~~f~~~~  243 (406)
                      +....++.|..++|.++|.++|.++++||||+|++..|||.++||+++|.++|++++|.++.      ++|+|+.|++||
T Consensus        50 ~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT~drLskkyrnq~Fkcged~~gnsv~MKmkyY~~Ym  129 (407)
T KOG2130|consen   50 FFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWTLDRLSKKYRNQKFKCGEDNNGNSVKMKMKYYIEYM  129 (407)
T ss_pred             ccccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhhHHHHHHHhcCccccccccCCCcceeeeHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999974      569999999999


Q ss_pred             hccCCCCCeeecCcccccccC--ccccCCCCCCcChhhhhhhcCCC-CCCcceeEeccCCCCCcceecCCCCcceEEEEE
Q 042108          244 DSVREERPLYLFDPKFADKVP--TLGGEYEVPVYFREDLFSVLGNE-RPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIK  320 (406)
Q Consensus       244 ~~~~~~~~~Yl~d~~~~~~~p--~L~~d~~~P~~f~~d~~~~l~~~-rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~  320 (406)
                      +++.|+.|+|+||..|.++.|  .|.+||.||.+|++|+|..+|++ ||++||++|||++|||.+|+||..|||||++|+
T Consensus       130 ~~~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~  209 (407)
T KOG2130|consen  130 KSTRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQ  209 (407)
T ss_pred             hccccCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhh
Confidence            999999999999999999999  89999999999999999999987 999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhh----cCCCCcEEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108          321 GSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATK----NWKKRPIECICKAGEVIFVPNGWWHLVINLEE  396 (406)
Q Consensus       321 G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~----~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~  396 (406)
                      |+|+|.||||...+++|.|..++.. ..|+++.+|+..+|+..+    ....+++||+|.|||++|||+||||.|+|+|+
T Consensus       210 GhKrW~LfPp~~p~~lvkv~~~e~g-~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~  288 (407)
T KOG2130|consen  210 GHKRWVLFPPGTPPELVKVTVDEGG-KQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEP  288 (407)
T ss_pred             ccceeEEcCCCCCCCceeecccccC-CCCcceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCc
Confidence            9999999999999999998877655 689999999999998876    22357899999999999999999999999999


Q ss_pred             cEEEeeeccC
Q 042108          397 SIAITQNYVS  406 (406)
Q Consensus       397 sIavt~nFv~  406 (406)
                      +|||||||+|
T Consensus       289 TIAiTqNf~s  298 (407)
T KOG2130|consen  289 TIAITQNFAS  298 (407)
T ss_pred             eeeeeecccc
Confidence            9999999986

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>COG2850 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG3706 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A Back     alignment and domain information
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase Back     alignment and domain information
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional Back     alignment and domain information
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>PRK04190 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1 Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase [] Back     alignment and domain information
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase Back     alignment and domain information
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>PLN00212 glutelin; Provisional Back     alignment and domain information
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase Back     alignment and domain information
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15457 ethanolamine utilization protein EutQ; Provisional Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3ld8_A334 Structure Of Jmjd6 And Fab Fragments Length = 334 2e-39
3k2o_A336 Structure Of An Oxygenase Length = 336 5e-38
4aap_A239 Crystal Structure Of Jmjd5 Domain Of Human Lysine-S 7e-10
4gjz_A235 Jmjd5 In Complex With 2-Oxoglutarate Length = 235 8e-10
3uyj_A248 Crystal Structure Of Jmjd5 Catalytic Core Domain In 8e-10
4gjy_A235 Jmjd5 In Complex With N-Oxalylglycine Length = 235 2e-09
3k3n_A 371 Crystal Structure Of The Catalytic Core Domain Of H 9e-07
3kv4_A 447 Structure Of Phf8 In Complex With Histone H3 Length 9e-07
3kcx_A335 Factor Inhibiting Hif-1 Alpha In Complex With Clioq 1e-06
4do0_A 374 Crystal Structure Of Human Phf8 In Complex With Dam 1e-06
2y0i_A352 Factor Inhibiting Hif-1 Alpha In Complex With Tanky 1e-06
2wwu_A 371 Crystal Structure Of The Catalytic Domain Of Phd Fi 1e-06
2xum_A349 Factor Inhibiting Hif (Fih) Q239h Mutant In Complex 1e-06
1h2k_A349 Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 1e-06
1iz3_A349 Dimeric Structure Of Fih (Factor Inhibiting Hif) Le 1e-06
1mze_A351 Human Factor Inhibiting Hif (Fih1) Length = 351 1e-06
3d8c_A349 Factor Inhibiting Hif-1 Alpha D201g Mutant In Compl 7e-06
2ilm_A349 Factor Inhibiting Hif-1 Alpha D201a Mutant In Compl 9e-06
3kv9_A 397 Structure Of Kiaa1718 Jumonji Domain Length = 397 2e-05
3kv5_D 488 Structure Of Kiaa1718, Human Jumonji Demethylase, I 3e-05
3ptr_B 392 Phf2 Jumonji Domain Length = 392 8e-05
3n9l_A 528 Cekdm7a From C.Elegans, Complex With H3k4me3 Peptid 3e-04
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 14/226 (6%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVG------PVEMKLEEYFRYSDSVR 247
           P KPV+L    + W+A +KW  + L     + +F  G       V+MK++ Y  Y +S R
Sbjct: 66  PYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTR 125
Query: 248 EERPLYLFDPKFAD--KVPTLGGEYEVPVYFREDLFSVLGNER-PDYRWVIIGPAGSGSS 304
           ++ PLY+FD  + +  K   L  +Y+VP +F +DLF   G +R P YRW ++GP  SG+ 
Sbjct: 126 DDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTG 185
Query: 305 FHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATK 364
            H+DP  TSAWNA+++G K+W LFP       +  + D        +I  WF   Y  T+
Sbjct: 186 IHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAIT-WFNVIYPRTQ 244
Query: 365 --NW--KKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
              W  + +P+E + K GE +FVP GWWH+V+NL+ +IAITQN+ S
Sbjct: 245 LPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFAS 290
>pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336 Back     alignment and structure
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 Back     alignment and structure
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 Back     alignment and structure
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 Back     alignment and structure
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 Back     alignment and structure
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human Phf8 Length = 371 Back     alignment and structure
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3 Length = 447 Back     alignment and structure
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol Length = 335 Back     alignment and structure
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide Length = 374 Back     alignment and structure
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2 (Tnks2) Fragment Peptide (21-Mer) Length = 352 Back     alignment and structure
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger Protein 8 Length = 371 Back     alignment and structure
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer) Length = 349 Back     alignment and structure
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha Fragment Peptide Length = 349 Back     alignment and structure
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif) Length = 349 Back     alignment and structure
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1) Length = 351 Back     alignment and structure
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer Length = 349 Back     alignment and structure
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer Length = 349 Back     alignment and structure
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain Length = 397 Back     alignment and structure
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex With N-Oxalylglycine Length = 488 Back     alignment and structure
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain Length = 392 Back     alignment and structure
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And Nog Length = 528 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 4e-81
3uyj_A248 Lysine-specific demethylase 8; jellyroll-like all 1e-69
3kv9_A 397 JMJC domain-containing histone demethylation prote 1e-47
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 1e-47
3kv5_D 488 JMJC domain-containing histone demethylation prote 3e-45
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 2e-43
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 3e-43
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 4e-43
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 1e-41
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 2e-35
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 3e-31
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 2e-13
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-07
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 7e-07
4diq_A 489 Lysine-specific demethylase NO66; structural genom 1e-06
2xdv_A 442 MYC-induced nuclear antigen; ribosome biogenesis, 6e-06
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 9e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 3e-05
3avr_A 531 Lysine-specific demethylase 6A; cupin superfamily, 6e-05
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 Back     alignment and structure
 Score =  251 bits (642), Expect = 4e-81
 Identities = 98/274 (35%), Positives = 146/274 (53%), Gaps = 19/274 (6%)

Query: 148 RDFYSDYLFQSWLCANLEMKPEWLERDNIARKKC--ISVEEFVSSFEEPNKPVLLEGCLD 205
           +D             +  + P  +  DN+ R     +SVEEFV  +E P KPV+L    +
Sbjct: 22  KDSLDWTRHNY--YESFSLSPAAV-ADNVERADALQLSVEEFVERYERPYKPVVLLNAQE 78

Query: 206 NWAALKKWDRDYLVNVCGDVRFAVG------PVEMKLEEYFRYSDSVREERPLYLFDPKF 259
            W+A +KW  + L     + +F  G       V+MK++ Y  Y +S R++ PLY+FD  +
Sbjct: 79  GWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSY 138

Query: 260 AD--KVPTLGGEYEVPVYFREDLFSVLG-NERPDYRWVIIGPAGSGSSFHMDPNSTSAWN 316
            +  K   L  +Y+VP +F +DLF   G   RP YRW ++GP  SG+  H+DP  TSAWN
Sbjct: 139 GEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWN 198

Query: 317 AIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKK----RPIE 372
           A+++G K+W LFP       +  + D        +I  WF   Y  T+        +P+E
Sbjct: 199 ALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAI-TWFNVIYPRTQLPTWPPEFKPLE 257

Query: 373 CICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
            + K GE +FVP GWWH+V+NL+ +IAITQN+ S
Sbjct: 258 ILQKPGETVFVPGGWWHVVLNLDTTIAITQNFAS 291
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 Back     alignment and structure
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 100.0
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 100.0
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 100.0
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 100.0
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 100.0
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 100.0
3kv9_A 397 JMJC domain-containing histone demethylation prote 100.0
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 100.0
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 100.0
3kv5_D 488 JMJC domain-containing histone demethylation prote 100.0
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 99.95
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 99.94
2xdv_A 442 MYC-induced nuclear antigen; ribosome biogenesis, 99.82
4diq_A 489 Lysine-specific demethylase NO66; structural genom 99.78
2ypd_A392 Probable JMJC domain-containing histone demethyla 99.68
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 99.06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.02
3avr_A 531 Lysine-specific demethylase 6A; cupin superfamily, 99.01
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.82
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.82
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.54
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.41
3dxt_A354 JMJC domain-containing histone demethylation PROT; 98.41
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 98.38
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 98.36
3opt_A373 DNA damage-responsive transcriptional repressor R; 98.11
2ox0_A381 JMJC domain-containing histone demethylation PROT; 97.9
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.16
4hfx_A97 Transcription elongation factor B polypeptide 3; s 96.39
2e9q_A459 11S globulin subunit beta; cucubitin, pumpkin SEED 96.38
3ksc_A496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 96.37
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 96.24
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 96.21
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 96.16
3kgl_A466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 95.91
3qac_A465 11S globulin SEED storage protein; 11S SEED storag 95.71
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 95.64
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 95.57
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 95.5
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 95.49
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 95.46
2d40_A354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 95.31
2y0o_A175 Probable D-lyxose ketol-isomerase; carbohydrate me 95.25
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 95.25
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 95.19
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 95.18
3st7_A369 Capsular polysaccharide synthesis enzyme CAP5F; ro 95.12
2vqa_A 361 SLL1358 protein, MNCA; periplasmic binding protein 95.1
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 95.05
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 95.02
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 94.98
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 94.93
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 94.83
2cav_A445 Protein (canavalin); vicilin, 7S SEED protein, dom 94.82
1uij_A416 Beta subunit of beta conglycinin; double-stranded 94.82
1zvf_A176 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b 94.72
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 94.68
2phl_A397 Phaseolin; plant SEED storage protein(vicilin); HE 94.66
1yfu_A174 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid 94.63
1j58_A 385 YVRK protein; cupin, decarboxyklase, oxalate, mang 94.63
2vqa_A361 SLL1358 protein, MNCA; periplasmic binding protein 94.54
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 94.5
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 94.4
2ea7_A434 7S globulin-1; beta barrel, cupin superfamily, pla 94.29
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 94.27
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 94.09
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 94.06
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 94.05
3nw4_A 368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 94.04
3h8u_A125 Uncharacterized conserved protein with double-STR 93.9
3rns_A 227 Cupin 2 conserved barrel domain protein; structura 93.89
1v70_A105 Probable antibiotics synthesis protein; structural 93.87
3nw4_A368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 93.87
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 93.79
3bu7_A 394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 93.77
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 93.76
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 93.72
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 93.56
3lwc_A119 Uncharacterized protein; structural genomics, unkn 93.49
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 93.2
3ejk_A174 DTDP sugar isomerase; YP_390184.1, structural geno 93.15
2xlg_A 239 SLL1785 protein, CUCA; metal binding protein, cupi 93.13
4i4a_A128 Similar to unknown protein; structural genomics, P 93.11
1y3t_A 337 Hypothetical protein YXAG; BI cupin, dioxygenase, 93.0
1uij_A 416 Beta subunit of beta conglycinin; double-stranded 92.77
2d40_A 354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 92.68
1j58_A385 YVRK protein; cupin, decarboxyklase, oxalate, mang 92.57
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 92.54
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 92.53
3uss_A211 Putative uncharacterized protein; cupin, three his 92.43
4axo_A151 EUTQ, ethanolamine utilization protein; structural 92.21
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 92.14
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 92.08
3bb6_A127 Uncharacterized protein YEAR; structural genomics, 92.05
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 91.84
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 91.83
2qnk_A 286 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol 91.45
3rns_A227 Cupin 2 conserved barrel domain protein; structura 91.1
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 90.95
3d82_A102 Cupin 2, conserved barrel domain protein; structur 90.89
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 90.88
1ep0_A185 DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race 90.81
2ixk_A184 DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l 90.48
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 90.3
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 90.22
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 90.17
3h7j_A 243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 89.83
3s7i_A418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 89.77
2q30_A110 Uncharacterized protein; double-stranded beta-heli 89.3
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 89.21
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 89.15
1vj2_A126 Novel manganese-containing cupin TM1459; structura 88.81
2pa7_A141 DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug 88.71
1fxz_A 476 Glycinin G1; proglycinin, legumin, SEED storage pr 88.71
1oi6_A205 PCZA361.16; epimerase, vancomycin group antibiotic 88.64
2e9q_A 459 11S globulin subunit beta; cucubitin, pumpkin SEED 88.44
2cav_A 445 Protein (canavalin); vicilin, 7S SEED protein, dom 88.29
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 88.16
1dzr_A183 DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 88.09
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 87.92
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 87.87
3bcw_A123 Uncharacterized protein; structural genomics, join 87.59
3ryk_A205 DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat 87.36
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 87.2
1upi_A225 DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat 86.99
1vr3_A191 Acireductone dioxygenase; 13543033, structural gen 86.96
1nxm_A197 DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell 86.95
3s7i_A 418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 86.93
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 86.82
2d5f_A 493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 86.51
1zrr_A179 E-2/E-2' protein; nickel, cupin, beta helix, methi 85.87
1juh_A 350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 85.81
2c0z_A216 NOVW; isomerase, epimerase, antibiotic biosynthesi 84.97
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 84.18
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 83.99
1wlt_A196 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 83.62
1sef_A274 Conserved hypothetical protein; structural genomic 83.22
3qac_A 465 11S globulin SEED storage protein; 11S SEED storag 82.77
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 82.12
3c3v_A 510 Arachin ARAH3 isoform; peanut allergen, allergy, g 80.99
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-50  Score=399.38  Aligned_cols=245  Identities=39%  Similarity=0.796  Sum_probs=209.3

Q ss_pred             hhhcccCCcCcccCCCcccc--CCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEc------c
Q 042108          160 LCANLEMKPEWLERDNIARK--KCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVG------P  231 (406)
Q Consensus       160 ~c~~~~~~~~~~~~~~I~r~--~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~------~  231 (406)
                      +|..+++.+. ....+|+|+  +.+|+++|.++|+.+++||||+|++++|||+++|+++||++++|+.+|.++      .
T Consensus        32 ~~~~~~~~~~-~~~~~I~Ri~~~~lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~G~~~V~v~~~~~~~~  110 (336)
T 3k2o_A           32 YYESFSLSPA-AVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYS  110 (336)
T ss_dssp             HHHHCCCCGG-GCCCCCCEEEGGGCCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHSTTCEEEEEECTTSCE
T ss_pred             hhhhhhhchh-hcCCCCCEecCCCCCHHHHHHHhhccCCCEEEeCCcCCChhHhhhhHHHHHHHhCCceEEEEecCCCce
Confidence            3455554332 146789999  579999999999999999999999999999999999999999999999986      4


Q ss_pred             eecchHHHHHhhhccCCCCCeeecCccccc--ccCccccCCCCCCcChhhhhhhcCC-CCCCcceeEeccCCCCCcceec
Q 042108          232 VEMKLEEYFRYSDSVREERPLYLFDPKFAD--KVPTLGGEYEVPVYFREDLFSVLGN-ERPDYRWVIIGPAGSGSSFHMD  308 (406)
Q Consensus       232 ~~~~l~~f~~~~~~~~~~~~~Yl~d~~~~~--~~p~L~~d~~~P~~f~~d~~~~l~~-~rp~~~~l~iG~~gs~t~~H~D  308 (406)
                      +.|+|++|++|+.+..++.++||++..+.+  .+|+|.+||.+|++|.+|+|+.+++ .+++++|+|||++|++|++|+|
T Consensus       111 ~~m~~~~fl~~~~~~~~~~~lYL~d~~~~e~~~~p~L~~dy~~P~~f~~d~~~~~~~~~~p~~~~~~~G~~gs~t~~H~D  190 (336)
T 3k2o_A          111 VKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHID  190 (336)
T ss_dssp             EEEEHHHHHHHHHHCCCSSCCCEEESCGGGSTTGGGGGGGCCCCGGGCCCGGGGGCTTTSCCCEEEEEECTTCEEEEECC
T ss_pred             eeecHHHHHHHHHhcCCCCCceEecccccccccchhHHHhcCCCcccccchhhhcccccCCCceEEEECCCCccCCcccC
Confidence            789999999999988888899999988764  4899999999999999999988876 4889999999999999999999


Q ss_pred             CCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcC----CCCcEEEEEcCCCEEEeC
Q 042108          309 PNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNW----KKRPIECICKAGEVIFVP  384 (406)
Q Consensus       309 ~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~----~~~~~~~vl~pGD~LfIP  384 (406)
                      +++|+||++||.|+|+|+||||++.. .+|+......-..+.+..+|+.+.||.++..    .+++++|+|+|||+||||
T Consensus       191 ~~~~~~~~~~v~G~K~~~L~pP~~~~-~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l~pGd~l~iP  269 (336)
T 3k2o_A          191 PLGTSAWNALVQGHKRWCLFPTSTPR-ELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVP  269 (336)
T ss_dssp             GGGCEEEEEEEESCEEEEEECTTSCH-HHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEECTTCEEEEC
T ss_pred             CCccceeeEEEeeeEEEEEeCCCcch-hcccCcccccCCCccchhhhhhhhCcchhhhcccccCceEEEEECCCCEEEeC
Confidence            99999999999999999999999865 5665321100011234568998899987532    246799999999999999


Q ss_pred             CCCeeeeeecCccEEEeeeccC
Q 042108          385 NGWWHLVINLEESIAITQNYVS  406 (406)
Q Consensus       385 ~gWwH~V~nl~~sIavt~nFv~  406 (406)
                      +||||+|.|+++||+||+||++
T Consensus       270 ~gw~H~v~~~~~sisv~~~f~~  291 (336)
T 3k2o_A          270 GGWWHVVLNLDTTIAITQNFAS  291 (336)
T ss_dssp             TTCEEEEEESSCEEEEEEEECC
T ss_pred             CCCcEEEecCCCeEEEEcccCC
Confidence            9999999999999999999985
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens} Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13 Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A* Back     alignment and structure
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A* Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A* Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A* Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str} Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A* Back     alignment and structure
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Back     alignment and structure
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Back     alignment and structure
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1 Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 406
d1vrba1319 b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla 1e-30
d1h2ka_335 b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit 3e-30
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 2e-06
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-05
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 4e-04
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score =  117 bits (294), Expect = 1e-30
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 11/231 (4%)

Query: 182 ISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYL------VNVCGDVRFAVGPVEMK 235
           +++ EF+  +    KP++  G ++ + ++  +++         +     +      +E  
Sbjct: 9   VTMSEFLEEYWP-VKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEES 67

Query: 236 LEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVI 295
                R+  S  E    Y            L          +      L         V 
Sbjct: 68  EGITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVY 127

Query: 296 IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEW 355
               G G   H D  +       I+G K W L   + V   +           P  +  +
Sbjct: 128 AAKNGGGFKAHFDAYTN--LIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSY 185

Query: 356 FMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
           +       K             G ++++P G WH   + + ++A+   +  
Sbjct: 186 WKGDP--PKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQ 234
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 100.0
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 99.97
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.37
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 99.14
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.02
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 97.43
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 97.26
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 97.01
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 96.96
d2phla2162 Seed storage 7S protein {French bean (Phaseolus vu 96.95
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 96.81
d1uika2185 Seed storage 7S protein {Soybean (Glycine max), be 96.75
d1j58a_372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 96.72
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 96.68
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 96.63
d1j58a_ 372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 96.62
d1zvfa1175 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea 96.41
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 96.4
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 96.25
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 95.96
d2d40a1308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 95.81
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 95.81
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 95.46
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 95.41
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 95.38
d2phda1 351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 95.21
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 95.13
d2d40a1 308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 94.85
d2pa7a1135 dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane 94.85
d1yfua1174 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m 94.81
d1y3ta1330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 94.8
d3bu7a1355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 94.68
d1juha_ 348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 94.44
d2phda1351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 94.35
d1y3ta1 330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 94.17
d3bu7a1 355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 93.6
d1wlta1176 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo 93.46
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 93.05
d2pyta1128 Ethanolamine utilization protein EutQ {Salmonella 92.16
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 91.51
d2ixca1198 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac 91.43
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 90.87
d1ep0a_183 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo 90.63
d2gm6a1192 Cysteine dioxygenase type I {Ralstonia eutropha [T 90.48
d3bb6a1109 Uncharacterized protein YeaR {Escherichia coli [Ta 89.86
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 89.85
d2phla1200 Seed storage 7S protein {French bean (Phaseolus vu 89.0
d1juha_348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 88.76
d1dzra_183 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone 88.75
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 86.99
d1nxma_194 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto 86.64
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 85.44
d1rc6a_ 253 Hypothetical protein YlbA {Escherichia coli [TaxId 84.84
d1oi6a_202 dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc 83.12
d2ixha1184 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom 82.62
d3dl3a196 Tellurite resistance protein B, TehB {Vibrio fisch 82.47
d2c0za1190 Novobiocin biosynthesis protein NovW {Streptomyces 80.84
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-39  Score=313.33  Aligned_cols=225  Identities=25%  Similarity=0.337  Sum_probs=172.4

Q ss_pred             cCCCccccCCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcc--------------------
Q 042108          172 ERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGP--------------------  231 (406)
Q Consensus       172 ~~~~I~r~~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~--------------------  231 (406)
                      ....|+|++..+.  +.++|+++++||||+|++++|||+ +||.|||++++|+.+|.|+.                    
T Consensus        24 ~~~~vpr~~~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~~~~~~~  100 (335)
T d1h2ka_          24 PTRPIPRLSQSDP--RAEELIENEEPVVLTDTNLVYPAL-KWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNF  100 (335)
T ss_dssp             CEEECCEECTTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCCHHHHHHHSCSCCEEEEEESSSBCCCCCGGGGGGGTTC
T ss_pred             CCcccCccCCCCc--CHHHHhcCCCCEEEeCCCCCCCcc-cCCHHHHHHhhCCceEEEEEecCccccccccccccccccc
Confidence            3467889987766  557899999999999999999998 69999999999999988741                    


Q ss_pred             ------eecchHHHHHhhhcc---CCCCCeeecCcccccccCccccCCCCCCcCh-hhhhhhcCCCCCCcceeEeccCCC
Q 042108          232 ------VEMKLEEYFRYSDSV---REERPLYLFDPKFADKVPTLGGEYEVPVYFR-EDLFSVLGNERPDYRWVIIGPAGS  301 (406)
Q Consensus       232 ------~~~~l~~f~~~~~~~---~~~~~~Yl~d~~~~~~~p~L~~d~~~P~~f~-~d~~~~l~~~rp~~~~l~iG~~gs  301 (406)
                            ..|++++|++++.+.   .....+|+++.......+.+..++..|..+- ..........+....+||||++|+
T Consensus       101 ~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lwiG~~gs  180 (335)
T d1h2ka_         101 KPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGN  180 (335)
T ss_dssp             CCSEEEEEECHHHHHHHHHHHHHTTCCCEEEEEEECCTTSCHHHHHHHHTSCHHHHHHHHHHHTCCCEEECEEEEECTTC
T ss_pred             ccccchhcccHHHHHHHHHhccccCCCcceEhhhccccccChhhhcccccCcccccchhhccccccCCcceEEEEcCCCC
Confidence                  468999999987542   2345678876544444445555665554322 222222222345567899999999


Q ss_pred             CCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCC--CCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCC
Q 042108          302 GSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSD--GAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGE  379 (406)
Q Consensus       302 ~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d--~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD  379 (406)
                      +|++|+|+++  ||++||+|+|+|+||||++.+ .+|+...  .....+.++....+...+|.+++  +++++|+|+|||
T Consensus       181 ~t~~H~D~~~--~~~~q~~G~K~~~l~~p~~~~-~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~--~~~~~~~l~pGd  255 (335)
T d1h2ka_         181 VTPAHYDEQQ--NFFAQIKGYKRCILFPPDQFE-CLYPYPVHHPCDRQSQVDFDNPDYERFPNFQN--VVGYETVVGPGD  255 (335)
T ss_dssp             EEEEECCSEE--EEEEEEESCEEEEEECGGGHH-HHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGG--CCEEEEEECTTC
T ss_pred             CCcccccccc--ceEEEeccceEEEEecccccc-ccccccccCCCCcceeccccCcchhhccchhc--CCceEEEECCCC
Confidence            9999999986  999999999999999999876 5665432  23455677777777888998876  467999999999


Q ss_pred             EEEeCCCCeeeeeecCc-cEEEeeec
Q 042108          380 VIFVPNGWWHLVINLEE-SIAITQNY  404 (406)
Q Consensus       380 ~LfIP~gWwH~V~nl~~-sIavt~nF  404 (406)
                      +||||+||||+|+|+++ +++|+.||
T Consensus       256 ~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         256 VLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             EEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             EEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            99999999999999965 66666665
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]} Back     information, alignment and structure
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]} Back     information, alignment and structure
>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]} Back     information, alignment and structure