Citrus Sinensis ID: 042133

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MKVRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
ccccccccccHHHHHHHcccccHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHcccccccccccEEEEEcccccccEEEEcccccccccccccccccccccccccccEEEEEEccEEEEEEcccccEEEEEEcccccEEEccccccccccccEEEEEEEcccccEEEEEEEccEEEEEEcccccEEEcccccccccccccccEEEccEEEEEEcccccccccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEEccEEEEEEEcccEEEEEEEcccccccEEEEEEEEcc
ccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEEcccccEEEEEccccccEEEEccccccccccEEEEEEEccccccEEEEEEEccEEEEEEEccccEEEEEcccccccccccccEEEEEEEEEEEEEccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEccEEEEEEccccEEEEEEEccccccccEEEEEEEcc
mkvrerpsipdeIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAasasasadednQILQLtfaskppfpfhlltledgniikrsahpilelpnniqesnfishsayglfcfhtrggvgkaylcnplrkevlelpqattggswldfyamgfdgttSTYKIVRVFGKRseiytlgtsswreissvppedldnmsngvsaygdmhwadddhfsfgqrkgvdncviISFDfkkeefkrtptpdfgslsyeHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
mkvrerpsipdeivdEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEiytlgtsswreissvppedLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFdfkkeefkrtptpdfgslsYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
MKVRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRsaaasasasaDEDNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
***********EIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKR**************QILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREI*************GVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKI***
*****RP**PDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
********IPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIK*************DNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
*****RPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLLTL********SAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKVRERPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASASADEDNQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGKRSEIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTPEDIEIWMMKDYDRKEWVKEYKITHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q9FT50390 Putative F-box protein At yes no 0.862 0.661 0.275 2e-19
Q8GXC7427 F-box/kelch-repeat protei no no 0.916 0.641 0.267 8e-17
Q9SFC7417 F-box protein At3g07870 O no no 0.906 0.649 0.268 7e-16
Q9FK54379 F-box protein At5g18160 O no no 0.866 0.683 0.27 1e-14
Q9SVX4 404 F-box protein At3g57590 O no no 0.879 0.650 0.274 2e-14
O49421411 F-box protein At4g19940 O no no 0.869 0.632 0.268 9e-14
Q9LPW2416 Putative F-box/kelch-repe no no 0.919 0.661 0.229 4e-13
Q9FZF8389 Putative F-box protein At no no 0.849 0.652 0.271 8e-13
O49565417 Putative F-box protein At no no 0.866 0.621 0.260 9e-13
Q9LIR8364 F-box/kelch-repeat protei no no 0.872 0.717 0.244 1e-12
>sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1 Back     alignment and function desciption
 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 142/305 (46%), Gaps = 47/305 (15%)

Query: 7   PSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAFAIKRSAAASASA----SADED 62
           P IP+E++ +I+I+LPAKSLMRF+CVSK+WL  I S  F  +    +S S       D +
Sbjct: 25  PEIPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRE 84

Query: 63  NQILQLTFASKPPFPFHLLTLEDGNIIKRSAHPILELPNNIQESNFISHSAYGLFCFHTR 122
           NQ   L   S               I + S  PI+          ++ ++A GL C+ T 
Sbjct: 85  NQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIM--------GGYLVNAARGLLCYRTG 136

Query: 123 GGVGKAYLCNPLRKEVLELPQATTGGSWLDFYAMGFDGTTSTYKIVRVFGK--------R 174
             V    +CNP  ++++ELP   +  +  +++  G D     YK++ +F +        R
Sbjct: 137 RRVK---VCNPSTRQIVELPIMRSKTNVWNWF--GHDPFHDEYKVLSLFWEVTKEQTVVR 191

Query: 175 SE--IYTLGT-SSWREISS--VPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCV 229
           SE  +  LG  +SWR   S   P       S G++  G ++++         R   + CV
Sbjct: 192 SEHQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYYS--------ARTDANRCV 243

Query: 230 IISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKG----CLAIVILTPEDIEIWMMKDY 285
           ++SFD   EEF     P F + S    R + +N +G    C  + + +   +++ +++D 
Sbjct: 244 LMSFDLSSEEFNLIELP-FENWS----RTIHMNYQGKVATCQYMRLASDGFVDVCVLEDA 298

Query: 286 DRKEW 290
           D+ +W
Sbjct: 299 DKSQW 303

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK54|FB260_ARATH F-box protein At5g18160 OS=Arabidopsis thaliana GN=At5g18160 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVX4|FB205_ARATH F-box protein At3g57590 OS=Arabidopsis thaliana GN=At3g57590 PE=2 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|O49565|FB239_ARATH Putative F-box protein At4g21240 OS=Arabidopsis thaliana GN=At4g21240 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
147854091322 hypothetical protein VITISV_041404 [Viti 0.655 0.608 0.393 6e-28
224123162 452 predicted protein [Populus trichocarpa] 0.892 0.590 0.270 9e-22
359806236 406 uncharacterized protein LOC100815072 [Gl 0.913 0.672 0.297 2e-20
357447615366 F-box/kelch-repeat protein [Medicago tru 0.889 0.726 0.286 7e-20
224123166 437 predicted protein [Populus trichocarpa] 0.856 0.585 0.273 3e-19
356555602 405 PREDICTED: F-box/kelch-repeat protein At 0.913 0.674 0.298 4e-19
218188728 426 hypothetical protein OsI_02996 [Oryza sa 0.906 0.636 0.277 4e-18
357447619 595 F-box family protein, partial [Medicago 0.909 0.457 0.261 9e-18
357470361369 F-box/kelch-repeat protein [Medicago tru 0.866 0.701 0.276 1e-17
15231179390 putative F-box protein [Arabidopsis thal 0.862 0.661 0.275 1e-17
>gi|147854091|emb|CAN83390.1| hypothetical protein VITISV_041404 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 122/221 (55%), Gaps = 25/221 (11%)

Query: 91  RSAHPILELPNNIQESNFISHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSW 150
           RS   I+E PN  +    + +S +GL CF   G   +A + NPLR E+L LP++T    W
Sbjct: 36  RSPKAIVEFPNRGRYE--LENSCHGLLCFVKCGKEEEALVSNPLRGELLMLPESTVMSRW 93

Query: 151 --LDFYAMGFDGTTSTYKIVRVF------GKR-----SEIYTLGT-SSWREISSVPPEDL 196
             LD Y +GFD +   YKIV VF       KR     +E+YT+GT SSWREIS +P   L
Sbjct: 94  PHLDRYGLGFDSSIKKYKIVHVFFRDFDWAKRGYRLGAEVYTVGTTSSWREISQIPCYPL 153

Query: 197 DNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFKRTPTPDFGSLSYEHE 256
                 V A G +HW  +  F+    K +    +ISF+ K EEF   P  +F S     +
Sbjct: 154 --YKRAVYASGALHWLVNYEFNPDNLKSM----VISFNIKDEEFNSIPHQEFPSKV--SK 205

Query: 257 RFVMINLKGCLAIVILT-PEDIEIWMMKDYDRKEWVKEYKI 296
            F +++L+G L +V  +    IEIW +KDY++KEWV+EY+I
Sbjct: 206 WFELVDLRGYLGMVDFSLGTHIEIWKLKDYEKKEWVREYRI 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123162|ref|XP_002330354.1| predicted protein [Populus trichocarpa] gi|222871558|gb|EEF08689.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806236|ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357447615|ref|XP_003594083.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355483131|gb|AES64334.1| F-box/kelch-repeat protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224123166|ref|XP_002330355.1| predicted protein [Populus trichocarpa] gi|222871559|gb|EEF08690.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555602|ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] Back     alignment and taxonomy information
>gi|218188728|gb|EEC71155.1| hypothetical protein OsI_02996 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357447619|ref|XP_003594085.1| F-box family protein, partial [Medicago truncatula] gi|355483133|gb|AES64336.1| F-box family protein, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|357470361|ref|XP_003605465.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355506520|gb|AES87662.1| F-box/kelch-repeat protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15231179|ref|NP_190800.1| putative F-box protein [Arabidopsis thaliana] gi|75262963|sp|Q9FT50.1|FB202_ARATH RecName: Full=Putative F-box protein At3g52320 gi|10045565|emb|CAC07923.1| putative protein [Arabidopsis thaliana] gi|332645411|gb|AEE78932.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.565 0.395 0.307 1.7e-19
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.859 0.658 0.274 1.2e-18
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.892 0.733 0.247 9.2e-18
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.347 0.249 0.373 1.4e-15
TAIR|locus:2202425389 AT1G47790 "AT1G47790" [Arabido 0.903 0.694 0.283 7.5e-14
TAIR|locus:2172304379 AT5G18160 "AT5G18160" [Arabido 0.581 0.459 0.276 5.9e-13
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.913 0.656 0.240 1.9e-12
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.876 0.637 0.267 4.4e-12
TAIR|locus:2127333417 AT4G21240 "AT4G21240" [Arabido 0.575 0.412 0.255 4.5e-12
TAIR|locus:2033739302 AT1G32420 "AT1G32420" [Arabido 0.846 0.837 0.244 8.6e-12
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 190 (71.9 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
 Identities = 60/195 (30%), Positives = 91/195 (46%)

Query:   112 SAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSW------LDFYAMGFDGTTSTY 165
             S+ GL C     G G  +L NP   +   LP+     S          Y  GFDG T  Y
Sbjct:   168 SSNGLVCISP--GEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDY 225

Query:   166 KIVRVFGKRSEI-----YTLGTSSWREISSVPPEDLD-NMSNGVSAYGDMHWADDDHFSF 219
             K+V++     +I     Y+L   SWR I ++  E  D + ++GV   G +HW   +    
Sbjct:   226 KLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTES-RH 284

Query:   220 GQRKGVDNCVIISFDFKKEEFKRTPTPDFGS-LSYEHERFVMINLKGCLAIVILTPEDI- 277
              QR      V+++FD + EEF+  P PD     S+    FV+ +L G L +V  +  D+ 
Sbjct:   285 NQR------VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN-SCYDVH 337

Query:   278 -EIWMMKDY-DRKEW 290
              +IW+M +Y + K W
Sbjct:   338 DDIWVMSEYGEAKSW 352
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172304 AT5G18160 "AT5G18160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127333 AT4G21240 "AT4G21240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033739 AT1G32420 "AT1G32420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01320011
hypothetical protein (425 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 3e-27
pfam08268125 pfam08268, FBA_3, F-box associated domain 6e-08
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-06
pfam0064648 pfam00646, F-box, F-box domain 2e-06
pfam07734159 pfam07734, FBA_1, F-box associated 5e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  105 bits (264), Expect = 3e-27
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 22/194 (11%)

Query: 115 GLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGSW--LDFYAMGFDGTTSTYKIVRVFG 172
           GL CF     +    + NP   +   LP   +  S    D Y +G+D     YK++    
Sbjct: 6   GLICFSYGKRL---VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSD 62

Query: 173 KRS-------EIYTLGTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGV 225
           +         ++YTLG++SWR I   PP      S GV   G +++    +         
Sbjct: 63  RSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLK-SRGVCINGVLYYLA--YTLKTNPD-- 117

Query: 226 DNCVIISFDFKKEEFKRTPTPDFGSLSYEHERFVMINLKGCLAIVILTP--EDIEIWMMK 283
               I+SFD   E FK       G+     +   +IN KG LA++       + ++W++ 
Sbjct: 118 --YFIVSFDVSSERFKEFIPLPCGNSDS-VDYLSLINYKGKLAVLKQKKDTNNFDLWVLN 174

Query: 284 DYDRKEWVKEYKIT 297
           D  ++EW K + + 
Sbjct: 175 DAGKQEWSKLFTVP 188

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.58
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.47
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.42
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.05
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.92
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.83
PHA02713557 hypothetical protein; Provisional 98.77
PHA02713557 hypothetical protein; Provisional 98.73
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.59
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.58
PHA02790480 Kelch-like protein; Provisional 98.57
PHA03098534 kelch-like protein; Provisional 98.48
PLN02153341 epithiospecifier protein 98.44
PHA03098534 kelch-like protein; Provisional 98.43
PHA02790480 Kelch-like protein; Provisional 98.42
PLN02193470 nitrile-specifier protein 98.34
TIGR03547 346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.32
PLN02153 341 epithiospecifier protein 98.27
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.22
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.17
PLN02193 470 nitrile-specifier protein 98.17
PRK14131 376 N-acetylneuraminic acid mutarotase; Provisional 98.16
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.12
KOG0281 499 consensus Beta-TrCP (transducin repeats containing 98.12
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.05
KOG4693 392 consensus Uncharacterized conserved protein, conta 97.89
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.8
KOG2997366 consensus F-box protein FBX9 [General function pre 96.73
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.6
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 95.93
PF1396450 Kelch_6: Kelch motif 95.8
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.17
KOG1230 521 consensus Protein containing repeated kelch motifs 95.02
KOG1230 521 consensus Protein containing repeated kelch motifs 94.93
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 94.77
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.34
KOG0274 537 consensus Cdc4 and related F-box and WD-40 protein 94.33
KOG4693392 consensus Uncharacterized conserved protein, conta 94.11
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 94.04
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 91.87
PF1396450 Kelch_6: Kelch motif 90.53
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 89.28
KOG4341 483 consensus F-box protein containing LRR [General fu 89.24
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 87.58
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 85.59
smart00284255 OLF Olfactomedin-like domains. 85.5
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 82.17
PLN02772 398 guanylate kinase 82.02
smart0061247 Kelch Kelch domain. 81.36
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1e-31  Score=224.68  Aligned_cols=175  Identities=27%  Similarity=0.465  Sum_probs=137.3

Q ss_pred             EeeecceEEeeEeCCcccEEEEcccchhhhcCCCCCCCCC-Ccc-eEEEeEeCCCCCEEEEEEe-------CceEEEEEc
Q 042133          110 SHSAYGLFCFHTRGGVGKAYLCNPLRKEVLELPQATTGGS-WLD-FYAMGFDGTTSTYKIVRVF-------GKRSEIYTL  180 (299)
Q Consensus       110 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~-~~~-~~~l~~d~~~~~ykvv~~~-------~~~~~vyss  180 (299)
                      ++|||||||+.  . ...++||||+||+++.||+++.... ... .++||||+.+++||||++.       ...++||++
T Consensus         1 ~~sCnGLlc~~--~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~   77 (230)
T TIGR01640         1 VVPCDGLICFS--Y-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL   77 (230)
T ss_pred             CcccceEEEEe--c-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence            47999999998  5 3789999999999999997763211 111 3899999999999999997       268999999


Q ss_pred             CCCCceecCCCCCccccCCCCceEECCeeEEeecCCCccCccCCCCccEEEEEECCCCeee-eeCCCCCCCCCcccccee
Q 042133          181 GTSSWREISSVPPEDLDNMSNGVSAYGDMHWADDDHFSFGQRKGVDNCVIISFDFKKEEFK-RTPTPDFGSLSYEHERFV  259 (299)
Q Consensus       181 ~~~~W~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~  259 (299)
                      ++++||.+...+...... ..++++||.+||++....      ......|++||+++|+|+ .+++|.....   .....
T Consensus        78 ~~~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~------~~~~~~IvsFDl~~E~f~~~i~~P~~~~~---~~~~~  147 (230)
T TIGR01640        78 GSNSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLK------TNPDYFIVSFDVSSERFKEFIPLPCGNSD---SVDYL  147 (230)
T ss_pred             CCCCccccccCCCCcccc-CCeEEECCEEEEEEEECC------CCCcEEEEEEEcccceEeeeeecCccccc---cccce
Confidence            999999998543332222 249999999999997643      111237999999999999 5898875431   12246


Q ss_pred             EEE-ECCeEEEEEe--CCCeEEEEEeccCCCCceeEEEEEe
Q 042133          260 MIN-LKGCLAIVIL--TPEDIEIWMMKDYDRKEWVKEYKIT  297 (299)
Q Consensus       260 ~l~-~~g~L~~~~~--~~~~~~iW~l~~~~~~~W~~~~~i~  297 (299)
                      .|+ ++|+||++..  ....++||+|+|+++++|+|.++|+
T Consensus       148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~  188 (230)
T TIGR01640       148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP  188 (230)
T ss_pred             EEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence            788 9999999988  3467999999988877999999997

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.24
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.21
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.85
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.83
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.82
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.8
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.78
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.77
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.76
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.74
2ovr_B 445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.69
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.69
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.66
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.66
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 98.65
1p22_A 435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.45
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.39
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.39
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.22
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.88
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.73
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.71
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.6
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.31
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 97.19
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.88
3ei3_B 383 DNA damage-binding protein 2; UV-damage, DDB, nucl 92.06
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 90.81
3jrp_A 379 Fusion protein of protein transport protein SEC13 90.26
4gga_A 420 P55CDC, cell division cycle protein 20 homolog; ce 90.25
4e54_B 435 DNA damage-binding protein 2; beta barrel, double 89.31
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 88.08
4aez_A 401 CDC20, WD repeat-containing protein SLP1; cell cyc 86.65
3jrp_A379 Fusion protein of protein transport protein SEC13 86.2
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 85.79
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 85.27
3jro_A 753 Fusion protein of protein transport protein SEC13 83.62
1gxr_A 337 ESG1, transducin-like enhancer protein 1; transcri 82.64
4ggc_A 318 P55CDC, cell division cycle protein 20 homolog; ce 82.32
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 81.08
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
Probab=99.24  E-value=6.7e-12  Score=106.00  Aligned_cols=53  Identities=19%  Similarity=0.359  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHhcCChhhhh-hhhccchhhHhhcCCHHHHHHHHhhh
Q 042133            1 MKVRERPSIPDEIVDEIIIKLPAKSLM-RFRCVSKIWLHKIDSLAFAIKRSAAA   53 (299)
Q Consensus         1 m~~~~~~~LP~Dll~~Il~rLp~~~l~-r~r~VcK~W~~li~~~~F~~~~~~~~   53 (299)
                      |++..+..||+||+.+||++||+++|+ ||++|||+|+.+++++.|.+.++.+.
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            446788899999999999999999999 99999999999999999999987766
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 4e-05
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 8  SIPDEIVDEIIIKLPAKSLMRFRCVSKIW 36
          S+PDE++  I   L    L++   V K W
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRW 31

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.35
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.8
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.66
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.43
d1zgka1 288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.03
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 97.99
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.46
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.2
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 85.38
d1gxra_ 337 Groucho/tle1, C-terminal domain {Human (Homo sapie 81.59
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-13  Score=78.71  Aligned_cols=40  Identities=25%  Similarity=0.360  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 042133            6 RPSIPDEIVDEIIIKLPAKSLMRFRCVSKIWLHKIDSLAF   45 (299)
Q Consensus         6 ~~~LP~Dll~~Il~rLp~~~l~r~r~VcK~W~~li~~~~F   45 (299)
                      ++.||+|++.+||+.||++++.+++.|||+|+++++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999988753
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure