Citrus Sinensis ID: 042145

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MAAATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
ccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEcccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccEEEEEcc
ccccccHHHHHHHHcccccccHHccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEEccccccccHHHHEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEcccccccccEcccccccccccEEEEEccc
MAAATTKLLLSDLASTVesvtsnyirpisdrpnltevqisdgsiplidlqvldgprrLDLIKQIGQachhdgffqvknhgipetiiNNTLSIAGAffklpeserlksysddpskskrlstsfnvntkkvsnwrdylrlhcyplqdcmhewpsnppsfEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALgkhgqqmalnycppcpqpdltyglpghtdpnlITVLLQDD
MAAATTKLLLSDLAStvesvtsnyirpisdrpnlTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLksysddpskskrlstsfnvntkkvsnwrdYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
MAAATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
************LASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKL***********************NVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVL****
*****TK****DL*STVESVTSNYIRPISD**********DGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLK********SKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
MAAATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESER**************STSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
*****TKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q05963 356 Naringenin,2-oxoglutarate N/A no 0.896 0.587 0.361 2e-33
Q05965 357 Naringenin,2-oxoglutarate N/A no 0.944 0.616 0.348 4e-33
P28038 377 Naringenin,2-oxoglutarate N/A no 0.987 0.610 0.333 6e-33
Q05964 365 Naringenin,2-oxoglutarate N/A no 0.914 0.583 0.350 1e-32
Q7XZQ7 368 Flavanone 3-dioxygenase O N/A no 0.914 0.578 0.35 1e-31
P24397 344 Hyoscyamine 6-dioxygenase N/A no 0.896 0.607 0.371 1e-31
Q9S818 358 Naringenin,2-oxoglutarate no no 0.944 0.614 0.343 1e-31
Q06942 364 Naringenin,2-oxoglutarate N/A no 0.969 0.620 0.347 2e-31
Q07353 369 Naringenin,2-oxoglutarate N/A no 0.914 0.577 0.333 3e-30
Q7XZQ8 365 Flavone synthase OS=Petro N/A no 0.892 0.569 0.353 4e-30
>sp|Q05963|FL3H_CALCH Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1 Back     alignment and function desciption
 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 22  SNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGI 81
           + ++R   +RP +     S+  IP+I L  +DG RR ++  +I +AC   G FQV +HG+
Sbjct: 17  NKFVRDEDERPKVPYNTFSN-EIPVISLAGIDGCRRAEICDEIVKACEDWGIFQVVDHGV 75

Query: 82  PETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCY 141
              ++++   +A  FF LP  E+L+ +     K      S ++  + V +WR+ +    Y
Sbjct: 76  DTKLLSDMTGLARDFFHLPTQEKLR-FDMTGGKKGGFIVSSHLQGEAVQDWREIVTYFSY 134

Query: 142 PLQDCMH-EWPSNPPSFEVVAE-YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQ 199
           P++   +  WP  P  +  V E Y   + GL  KLLE +SE+MGL+++ + KA     Q+
Sbjct: 135 PIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLSEAMGLEKEALTKACVDMDQK 194

Query: 200 MALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           + +NY P CPQPDLT GL  HTDP  IT+LLQD
Sbjct: 195 VVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQD 227
Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R-dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.
Callistephus chinensis (taxid: 13379)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 9
>sp|Q05965|FL3H_MATIN Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|P28038|FL3H_HORVU Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|Q05964|FL3H_DIACA Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ7|FL3H_PETCR Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1 Back     alignment and function description
>sp|P24397|HY6H_HYONI Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1 Back     alignment and function description
>sp|Q9S818|FL3H_ARATH Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1 Back     alignment and function description
>sp|Q06942|FL3H_MALDO Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q07353|FL3H_PETHY Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
224115488 350 predicted protein [Populus trichocarpa] 0.987 0.657 0.758 1e-99
225426516 348 PREDICTED: naringenin,2-oxoglutarate 3-d 1.0 0.669 0.709 1e-95
224061517 349 predicted protein [Populus trichocarpa] 0.978 0.653 0.726 6e-94
225426514 348 PREDICTED: naringenin,2-oxoglutarate 3-d 1.0 0.669 0.692 6e-93
297742473321 unnamed protein product [Vitis vinifera] 1.0 0.725 0.692 7e-93
225453648 344 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.987 0.668 0.715 2e-92
255555819 346 1-aminocyclopropane-1-carboxylate oxidas 0.982 0.661 0.713 5e-91
255548069 344 1-aminocyclopropane-1-carboxylate oxidas 0.987 0.668 0.693 9e-89
297809269 351 predicted protein [Arabidopsis lyrata su 0.995 0.660 0.648 9e-87
356559589 345 PREDICTED: flavonol synthase/flavanone 3 0.982 0.663 0.660 2e-86
>gi|224115488|ref|XP_002317046.1| predicted protein [Populus trichocarpa] gi|222860111|gb|EEE97658.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 205/232 (88%), Gaps = 2/232 (0%)

Query: 3   AATTKLLLSDLAST-VESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLI 61
           A T KLLL+DLAS+ V+ + SN+IRPISDRPNL++VQISDGSIPLIDL+ LDGP    +I
Sbjct: 2   APTAKLLLADLASSGVKQIPSNFIRPISDRPNLSDVQISDGSIPLIDLRGLDGPNHSTII 61

Query: 62  KQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTS 121
           +QIGQAC  DGFFQVKNHGIPE +I+  L+IA  FFKLPESERLK+YSDDP+K+ RLSTS
Sbjct: 62  EQIGQACQRDGFFQVKNHGIPEEMISIILNIARQFFKLPESERLKNYSDDPTKTTRLSTS 121

Query: 122 FNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEV-VAEYCTSVRGLVLKLLEAISE 180
           FN+ T++VS+WRD+LRLHCYPL+D +HEWPSNPPSF   VAEYCTSVRGLVL+LLEAISE
Sbjct: 122 FNIKTEQVSSWRDFLRLHCYPLEDYVHEWPSNPPSFRKDVAEYCTSVRGLVLRLLEAISE 181

Query: 181 SMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           S+GL+RDYIDK LG HGQ MA+NY PPCPQP+LTYGLPGHTDPNLIT+LLQD
Sbjct: 182 SLGLERDYIDKKLGGHGQHMAMNYYPPCPQPELTYGLPGHTDPNLITILLQD 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225426516|ref|XP_002278004.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] gi|297742472|emb|CBI34621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061517|ref|XP_002300519.1| predicted protein [Populus trichocarpa] gi|222847777|gb|EEE85324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426514|ref|XP_002278024.1| PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742473|emb|CBI34622.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453648|ref|XP_002267625.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|296089022|emb|CBI38725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555819|ref|XP_002518945.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223541932|gb|EEF43478.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255548069|ref|XP_002515091.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223545571|gb|EEF47075.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297809269|ref|XP_002872518.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318355|gb|EFH48777.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356559589|ref|XP_003548081.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2127686 348 AT4G10490 [Arabidopsis thalian 0.987 0.660 0.636 1e-77
TAIR|locus:2127691 349 AT4G10500 [Arabidopsis thalian 0.982 0.656 0.632 1e-77
TAIR|locus:2153924 341 DMR6 "DOWNY MILDEW RESISTANT 6 0.939 0.642 0.561 8.5e-65
TAIR|locus:2042356 357 AT2G44800 [Arabidopsis thalian 0.965 0.630 0.382 1.4e-39
TAIR|locus:2081962 357 AT3G60290 [Arabidopsis thalian 0.909 0.593 0.395 4.3e-38
TAIR|locus:2040575 366 AT2G36690 [Arabidopsis thalian 0.918 0.584 0.389 1.2e-35
TAIR|locus:2081008 358 F3H "flavanone 3-hydroxylase" 0.944 0.614 0.343 6e-32
TAIR|locus:2183429 340 KUOX1 "KAR-UP oxidoreductase 1 0.673 0.461 0.396 3.8e-30
TAIR|locus:2042942 353 AT2G38240 [Arabidopsis thalian 0.944 0.623 0.344 1.3e-29
TAIR|locus:2169697 371 AT5G05600 [Arabidopsis thalian 0.931 0.584 0.348 1.6e-29
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 147/231 (63%), Positives = 177/231 (76%)

Query:     4 ATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQ 63
             A +KLL+SD+AS V+ V SNY+RP+SDRP ++EVQ S  SIPLIDL  L GP R D+I Q
Sbjct:     2 AASKLLVSDIASVVDHVPSNYVRPVSDRPKMSEVQTSGDSIPLIDLHDLHGPNRADIINQ 61

Query:    64 IGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFN 123
                AC   GFFQ+KNHG+PE  I   ++ A  FF+  ESER+K YS D  K+ RLSTSFN
Sbjct:    62 FAHACSSCGFFQIKNHGVPEETIKKMMNAAREFFRQSESERVKHYSADTKKTTRLSTSFN 121

Query:   124 VNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESM 182
             V+ +KVSNWRD+LRLHCYP++D ++EWPS P SF EV AEY TSVR LVL LLEAISES+
Sbjct:   122 VSKEKVSNWRDFLRLHCYPIEDFINEWPSTPISFREVTAEYATSVRALVLTLLEAISESL 181

Query:   183 GLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233
             GL +D +   +GKHGQ MA+NY P CPQP+LTYGLPGH D NLITVLLQD+
Sbjct:   182 GLAKDRVSNTIGKHGQHMAINYYPRCPQPELTYGLPGHKDANLITVLLQDE 232
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0019748 "secondary metabolic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042356 AT2G44800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081962 AT3G60290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081008 F3H "flavanone 3-hydroxylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183429 KUOX1 "KAR-UP oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000477001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (348 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-119
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-105
PLN02947 374 PLN02947, PLN02947, oxidoreductase 4e-59
PLN02904 357 PLN02904, PLN02904, oxidoreductase 2e-50
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-44
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-42
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-41
PLN02704 335 PLN02704, PLN02704, flavonol synthase 5e-37
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-32
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-32
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-31
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-29
PLN02216 357 PLN02216, PLN02216, protein SRG1 2e-25
PLN03001 262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 5e-25
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 7e-25
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-22
PLN02997 325 PLN02997, PLN02997, flavonol synthase 3e-22
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-20
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-20
PLN00417 348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-20
PLN02485 329 PLN02485, PLN02485, oxidoreductase 1e-17
PTZ00273 320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-13
PLN02984 341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-11
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-10
PLN02156 335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-10
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-05
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 9e-04
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  343 bits (882), Expect = e-119
 Identities = 150/232 (64%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 3   AATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIK 62
           +AT+KLL+SD+AS V+ V SNY+RP+SDRPN++EV+ S  SIPLIDL+ L GP R D+I 
Sbjct: 1   SATSKLLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIIN 60

Query: 63  QIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSF 122
           Q   AC   GFFQ+KNHG+PE  I   +++A  FF   ESER+K YS D  K+ RLSTSF
Sbjct: 61  QFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSF 120

Query: 123 NVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISES 181
           NV+ +KVSNWRD+LRLHCYP++D + EWPS P SF EV AEY TSVR LVL LLEAISES
Sbjct: 121 NVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISES 180

Query: 182 MGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233
           +GL++D +   LGKHGQ MA+NY PPCPQP+LTYGLPGH D NLITVLLQD+
Sbjct: 181 LGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDE 232

Length = 348
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904 357 oxidoreductase 100.0
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947 374 oxidoreductase 100.0
PLN02216 357 protein SRG1 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276 361 gibberellin 20-oxidase 100.0
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704 335 flavonol synthase 100.0
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273 320 oxidase reductase; Provisional 100.0
PLN02485 329 oxidoreductase 100.0
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997 325 flavonol synthase 100.0
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403 303 aminocyclopropanecarboxylate oxidase 100.0
PLN02156 335 gibberellin 2-beta-dioxygenase 100.0
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365 300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.97
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.9
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.84
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=2e-50  Score=354.71  Aligned_cols=230  Identities=65%  Similarity=1.118  Sum_probs=193.6

Q ss_pred             hhhhhhHHhhhhccccCCcccccCCCCCCCCcccCCCCCCCceEeCCCCCCccHHHHHHHHHHHhHhcceEEEeccCCCh
Q 042145            4 ATTKLLLSDLASTVESVTSNYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPE   83 (233)
Q Consensus         4 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~   83 (233)
                      ++||..|+.|..++..||++|++|..++|.+..+..+..+||||||+.+.+.++.+++++|.+||++||||||+||||+.
T Consensus         2 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~   81 (348)
T PLN02912          2 ATSKLLVSDIASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPE   81 (348)
T ss_pred             ccchhHHHHHhcCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCH
Confidence            67899999999999999999999998887532222122579999999986656778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCHHHHhhccCCCCCCCcccccccccCCCCcccccccccccccCCCccCCCCCCCCCch-HHHHH
Q 042145           84 TIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSF-EVVAE  162 (233)
Q Consensus        84 ~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~wP~~~~~f-~~~~~  162 (233)
                      ++++++++++++||+||.|+|+++.........+|............||+|.+.+...+....+|.||..+++| +.+++
T Consensus        82 ~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~  161 (348)
T PLN02912         82 ETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAE  161 (348)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHH
Confidence            99999999999999999999999644332223333222222234567999998876444333478999988899 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHhcCcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEeecC
Q 042145          163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGKHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD  233 (233)
Q Consensus       163 y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~  233 (233)
                      |+++|.+++.+|+++|+++||+++++|.+++....+.||++|||||+.++..+|+++|||+|+||||+||+
T Consensus       162 y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~  232 (348)
T PLN02912        162 YATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDE  232 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECC
Confidence            99999999999999999999999999999887778899999999999887899999999999999999985

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-22
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-22
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 9e-21
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 3e-16
3oox_A 312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-08
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 14/232 (6%)
Query: 15  STVESVTSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDLIKQIGQ 66
           S + S+   YIRP  +  ++ +V    +  DG  +P IDL+ +   D   R + I+++ +
Sbjct: 12  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 67  ACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPS-KSKRLSTSFNVN 125
           A    G   + NHGIP  ++         FF L   E+ K  +D  + K +   +    N
Sbjct: 72  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 126 TKKVSNWRDYLRLHCYPLQDC-MHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMG 183
                 W DY     YP +   +  WP  P  + E  +EY   +R L  K+ +A+S  +G
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 184 LQRDYIDKALGKHGQ---QMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQD 232
           L+ D ++K +G   +   QM +NY P CPQP+L  G+  HTD + +T +L +
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-85
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 6e-77
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-52
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-49
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 8e-47
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-46
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  256 bits (656), Expect = 2e-85
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 14/233 (6%)

Query: 15  STVESVTSNYIRPISDRPNLTEVQISDG-----SIPLIDLQVLDGP---RRLDLIKQIGQ 66
           S + S+   YIRP  +  ++ +V + +       +P IDL+ ++      R + I+++ +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72

Query: 67  ACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPSKSKRL-STSFNVN 125
           A    G   + NHGIP  ++         FF L   E+ K  +D  +   +   +    N
Sbjct: 73  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 126 TKKVSNWRDYLRLHCYPLQDC-MHEWPSNPPSF-EVVAEYCTSVRGLVLKLLEAISESMG 183
                 W DY     YP +   +  WP  P  + E  +EY   +R L  K+ +A+S  +G
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 184 LQRDYIDKALGKH---GQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLLQDD 233
           L+ D ++K +G       QM +NY P CPQP+L  G+  HTD + +T +L + 
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.3e-51  Score=358.94  Aligned_cols=227  Identities=29%  Similarity=0.538  Sum_probs=197.1

Q ss_pred             hhhhHHhhhh-ccccCCcccccCCCCCCCCcc---cC---CCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEE
Q 042145            6 TKLLLSDLAS-TVESVTSNYIRPISDRPNLTE---VQ---ISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQ   75 (233)
Q Consensus         6 ~~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~~---~~---~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~   75 (233)
                      ++++|++|++ +++.||.+|++|..+++....   ..   .. .+||||||+.|.++   .+.+++++|.+||++|||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~-~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDG-PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCS-CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccC-CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            3578999997 899999999999888776321   01   12 47999999998654   36779999999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCC-CCCcccccccccCCCCcccccccccccccCCC-ccCCCCCCC
Q 042145           76 VKNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDP-SKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQ-DCMHEWPSN  153 (233)
Q Consensus        76 l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~-~~~~~wP~~  153 (233)
                      |+||||+.++++++++.+++||+||.|+|+++..... ..++||+........+..||+|.|.++..|.. ..+|.||..
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence            9999999999999999999999999999999976543 46899977654445667899999999876532 347899999


Q ss_pred             CCch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhc---CcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEE
Q 042145          154 PPSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALG---KHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVL  229 (233)
Q Consensus       154 ~~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~---~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL  229 (233)
                      ++.| +.+++|+++|++++..|+++|+++||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            9999 9999999999999999999999999999999999987   46788999999999998889999999999999999


Q ss_pred             eecC
Q 042145          230 LQDD  233 (233)
Q Consensus       230 ~qd~  233 (233)
                      +||+
T Consensus       242 ~qd~  245 (356)
T 1gp6_A          242 LHNM  245 (356)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9984
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-35
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-34
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-33
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 8e-23
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  124 bits (312), Expect = 5e-35
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 43  SIPLIDLQVLDGPRRLDLIKQIGQACHHDGFFQVKNHGIPETIINNTLSIAGAFFKLPES 102
           + P+I L  ++G  R   ++ I  AC + GFF++ NHGIP  +++    +    +K    
Sbjct: 2   NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCME 61

Query: 103 ERLKSYSDDPSKSKRLSTSFNVNTKKVSNWRDYLRLHCYPLQDCMHEWPSNPPSFEVVAE 162
           +R K      +     +   ++      +W     L   P+ +       +    EV+ +
Sbjct: 62  QRFKELVASKALEGVQAEVTDM------DWESTFFLKHLPISNISEVPDLDEEYREVMRD 115

Query: 163 YCTSVRGLVLKLLEAISESMGLQRDYIDKALGK---HGQQMALNYCPPCPQPDLTYGLPG 219
           +   +  L  +LL+ + E++GL++ Y+  A            ++  PPCP+PDL  GL  
Sbjct: 116 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 175

Query: 220 HTDPNLITVLLQDD 233
           HTD   I +L QDD
Sbjct: 176 HTDAGGIILLFQDD 189
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-46  Score=326.97  Aligned_cols=226  Identities=29%  Similarity=0.548  Sum_probs=187.1

Q ss_pred             hhhHHhhhh-ccccCCcccccCCCCCCCCccc------CCCCCCCceEeCCCCCCc---cHHHHHHHHHHHhHhcceEEE
Q 042145            7 KLLLSDLAS-TVESVTSNYIRPISDRPNLTEV------QISDGSIPLIDLQVLDGP---RRLDLIKQIGQACHHDGFFQV   76 (233)
Q Consensus         7 ~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~~~------~~~~~~iPvIDls~l~~~---~~~~~~~~l~~A~~~~GFf~l   76 (233)
                      ++-||+|++ |+++||+.|++|+.++|..+..      ... .+||||||+.|..+   .+++++++|.+||+++|||||
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDG-PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCS-CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCC-CCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            456999996 9999999999999888775311      223 68999999999765   467899999999999999999


Q ss_pred             eccCCChHHHHHHHHHHHHhhcCCHHHHhhccCCCCC-CCcccccccccCCCCcccccccccccccC-CCccCCCCCCCC
Q 042145           77 KNHGIPETIINNTLSIAGAFFKLPESERLKSYSDDPS-KSKRLSTSFNVNTKKVSNWRDYLRLHCYP-LQDCMHEWPSNP  154 (233)
Q Consensus        77 ~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~-~~~GY~~~~~~~~~~~~d~~E~~~~~~~p-~~~~~~~wP~~~  154 (233)
                      +||||+.++++++++++++||+||.|+|+++...... ...||+...........++.+.+.....+ ....+|.||...
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccccc
Confidence            9999999999999999999999999999998765422 34455444333444556666654432222 223478999999


Q ss_pred             Cch-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhc---CcCcceeEeeeCCCCCCCCcCCCCCccCCCceeEEe
Q 042145          155 PSF-EVVAEYCTSVRGLVLKLLEAISESMGLQRDYIDKALG---KHGQQMALNYCPPCPQPDLTYGLPGHTDPNLITVLL  230 (233)
Q Consensus       155 ~~f-~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~---~~~~~lrll~YPp~~~~~~~~g~~~HtD~g~lTlL~  230 (233)
                      +.| +.+++|+++|.+++++|+++++++||+++++|.+.+.   .+.+.||++||||++.++..+|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            999 9999999999999999999999999999999998864   456789999999999888899999999999999999


Q ss_pred             ecC
Q 042145          231 QDD  233 (233)
Q Consensus       231 qd~  233 (233)
                      ||+
T Consensus       242 q~~  244 (349)
T d1gp6a_         242 HNM  244 (349)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            985
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure