Citrus Sinensis ID: 042165

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980---
MATESPIRMSETSGKWPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTKDEVLDRDISHSDISVIISNMKDFNTGHSNLGNQKNQAQLNVHSQVSSSSQVENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES
cccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHcccccccHHHHHHHHcccccHHHHHHHHHHHcHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccc
ccccccEEEEcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccHHHHHEEcccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHcEEHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHccccHHHHHHHcHHHccccccccc
matespirmsetsgkwpALKKAAAFAHSSASMAAEELGLLQKGcdvhgsvqravpnrsgsappnmegsFLAIENLIArkssssgvnlanfngnirnseSEERLQANQTCLKYYgsnvnlnprlprhldhdlnrfgnrrgltsldnssncsvhVSQVTLSthkeeseddrspkhfsdemvdrkngfcsgNEAVKVAgqnrnlvdikqedfprssspvynqshsfgysdssslrdpsvissngvstttgahntgvsskvdVSTAynvsssshdwtatisstppteevtsndtdiwtkdevldrdishsDISVIISNMkdfntghsnlgnqknqaqlnvhsqvssssqvenAHSQVSSLGligthigmdqfhhgpsrpstavqpvvqssgftpplYASAAaymaspnpfysnvqapgfyspqygvggyvmnssigpplvagypphggiamvldgsagpsfhpqpsgvstggsvvhgsdmqYLNKIYGqfgfslqpsfanplhlqyyqqpfgeaynisgqfeplgskggvlgshtnshelkkgsdmaasdvqtfqhyrsgetenpstskvtvspyhmgnppnmgmfvypssplaspalpgspvvgtgllggrnemrfspvsnrysgwqgqrgfesyndpkICNFLEElksgkgrrfelsditghivefsadqhgsRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCiecippekigFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQhvlqrgkplerSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLigeenqtses
matespirmsetsgkwPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVpnrsgsappnMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGltsldnssncsVHVSQVtlsthkeeseddrspkhfsdemvDRKNGFCSGNEAVKVAGQNRNLVDIKqedfprssspvyNQSHSFGYSDSSSLRDPSVISSNGVstttgahntgvsskVDVSTAYNVsssshdwtatisstppteevtsndtdiwtkdevldrdISHSDISVIISNMKDFNTGHSNLGNQKNQAQLNVHSQVSSSSQVENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQhyrsgetenpstskvtVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQhvlqrgkpleRSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLigeenqtses
MATESPIRMSETSGkwpalkkaaafahssasmaaEELGLLQKGCDVHGSVQRAVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTKDEVLdrdishsdisviisNMKDFNTGHSNLGNQKNQAQLNVHsqvssssqvENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPsgvstggsvvhgsDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYpssplaspalpgspVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES
*********************************************************************LAIENL*******************************QTCLKYYGSNVNLNPRLPRHLDHDL***************************************************************************************************************************************************************DIWTKDEVLDRDISHSDISVIISNM*****************************************GLIGTHIGM**********************FTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLD*******************VVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQF***********************************************************************************GTGLLG*********VSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLI*********
********************************************************************************************************ANQTCLKYYGSNVNLN***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARF*************
***************WPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQ*****************HFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHS*************VISSNGVSTTTGAHNTGVSSKVDVSTAY*************************DTDIWTKDEVLDRDISHSDISVIISNMKDFNTGHSNLGNQKNQA********************VSSLGLIGTHIGMDQFHH***********VVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHY*************TVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES
**********************************EEL**LQKGCDV****QR********APPNMEGSFLAIENLIA********************ESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDL********************************************************************NLV**KQEDFP*******************************************************************************************************************************************************************************************AYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATESPIRMSETSGKWPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTKDEVLDRDISHSDISVIISNMKDFNTGHSNLGNQKNQAQLNVHSQVSSSSQVENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query983 2.2.26 [Sep-21-2011]
Q9C5E7861 Pumilio homolog 6, chloro yes no 0.848 0.968 0.461 0.0
Q9LJX4961 Pumilio homolog 5 OS=Arab no no 0.912 0.933 0.440 0.0
Q9ZW06972 Pumilio homolog 2 OS=Arab no no 0.406 0.411 0.572 1e-138
Q9ZW07968 Pumilio homolog 1 OS=Arab no no 0.632 0.642 0.435 1e-137
Q9ZW02964 Pumilio homolog 3 OS=Arab no no 0.408 0.417 0.566 1e-136
Q9SS471003 Pumilio homolog 4 OS=Arab no no 0.342 0.335 0.631 1e-131
Q80U581066 Pumilio homolog 2 OS=Mus yes no 0.336 0.310 0.557 1e-112
Q8TB721066 Pumilio homolog 2 OS=Homo yes no 0.336 0.310 0.557 1e-112
P258221533 Maternal protein pumilio yes no 0.341 0.219 0.554 1e-111
Q5R5X31186 Pumilio homolog 1 OS=Pong no no 0.336 0.279 0.549 1e-109
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 PE=1 SV=1 Back     alignment and function desciption
 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1002 (46%), Positives = 597/1002 (59%), Gaps = 168/1002 (16%)

Query: 1   MATESPIRMSETSGKWPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGS 60
           MATE+PIR+S ++ +W   +K +                              VPNRSGS
Sbjct: 1   MATENPIRISGSNERWSNSRKVS------------------------------VPNRSGS 30

Query: 61  APPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLN 120
           APPNMEGSFLA++NL++R+            G++ N+    R    +    +  S  +LN
Sbjct: 31  APPNMEGSFLAVDNLLSRQG-----------GSVYNNLMLPRYGFEEPVTTHPSSKHSLN 79

Query: 121 PRLP----------RHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRS 170
            R+P          + +D+ + RF + +GL    N  N  +H+SQ  LSTHKE SED+ S
Sbjct: 80  -RIPSPPIYYPTEYQFIDNRVGRFRSNQGL----NKVNSPIHLSQGKLSTHKEVSEDESS 134

Query: 171 PKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSS 230
            +   + + DR +G       ++++  +++L D +Q+D     +P +++S+S        
Sbjct: 135 QQLSVNSVSDRTDGL-----DIRLSPGSQSLADFRQDDTSSGQTPQHSRSNS-------- 181

Query: 231 LRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDT 290
                   SNG                +V+TA        D +   S    +++V   D 
Sbjct: 182 --------SNG----------------EVNTA--------DESGNFSEL--SDDVVVKDN 207

Query: 291 DIWTKDEVLDRDISHSDISVIISNMKDFNTGHSNLGNQK-------NQAQLNVHSQVSSS 343
              T    +  + S  D S IIS MK  N   S  G  K        Q +   H Q +++
Sbjct: 208 AASTARASIGNEKS-PDESTIISKMKSTNI--SGPGTAKYPREPRYGQPERQPHQQQNNA 264

Query: 344 SQVENAHSQVSSLGLIGTHIGMDQFHHG-PSRPSTAVQPVVQSSGFTPPLY--ASAAAYM 400
           + ++   S + S G+    IG  QFH+G P + S   QPV+QSSGFTPPL   A+  AYM
Sbjct: 265 TWIQGG-SNMGSHGVNDAVIGAGQFHYGQPYKFSGDGQPVLQSSGFTPPLLYTATQTAYM 323

Query: 401 ASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQ 460
            SP   Y N+Q+P  YSPQYG G Y   +++ P  + GYP HG + +V+     P F PQ
Sbjct: 324 TSPAHVY-NMQSPAVYSPQYGYGPY---TNMIPQFMPGYPSHGSVPVVVS----PDFIPQ 375

Query: 461 PSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPL 520
            SG S  GSVVHG +MQY  K+Y   G   QPSF +P+++QY QQ FG       Q EPL
Sbjct: 376 LSGPS-AGSVVHGGEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFG-------QMEPL 424

Query: 521 GSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMG 580
             +     +HTN+ E +K       D +  +  R     N +   + V+ Y  G  PNMG
Sbjct: 425 APR-----NHTNAPESQK------DDPKFLRQIRGPSNSNMARPGMGVNYY--GIQPNMG 471

Query: 581 MFV-YPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICN 639
           + V Y  + L  P  PG                  P    Y GWQ Q   E  N P++CN
Sbjct: 472 IMVQYLPTHLGPPLSPG----------------HVPYVEAYPGWQPQGSLEGANGPRLCN 515

Query: 640 FLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASK 699
           FLEELKSGKGRRF+LSDITGHIVEFSADQHGSRFIQQKLENC  +EKA+VF+EILPHA K
Sbjct: 516 FLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACK 575

Query: 700 LMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKA 759
           LMTDVFGNYVIQKFFEYG+  QRKELA+QL+GQI+PLS+QMYGCRVIQKAL+ IE +Q+ 
Sbjct: 576 LMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRV 635

Query: 760 QLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQ 819
           +L RELDGQVMRCVRDQNGNHVIQKCIE IP +K+GF++ AF GQV++LSMHPYGCRVIQ
Sbjct: 636 RLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQ 695

Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
           R+LE C+  HQC+FI +EIL++VC L++DQYGNYVTQHVL++G   ER +I RKLSGHIV
Sbjct: 696 RLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIV 755

Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE--ETLLTMMKDQFANYVVQKIFEL 937
           QLS HKFASNVIEKCL YGG  ER+LII+EI G +E   +LL MMKDQ+ NYVVQKIFE 
Sbjct: 756 QLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFET 815

Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
            +  Q+  + SR+R HA  LKKYTYGKHIV+R E    EENQ
Sbjct: 816 CTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQPSIEENQ 857
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2 Back     alignment and function description
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2 Back     alignment and function description
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2 Back     alignment and function description
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2 Back     alignment and function description
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query983
2254633451017 PREDICTED: pumilio homolog 5 [Vitis vini 0.994 0.961 0.601 0.0
356530316985 PREDICTED: pumilio homolog 5-like [Glyci 0.973 0.971 0.561 0.0
357449403984 Pumilio-like protein [Medicago truncatul 0.980 0.979 0.549 0.0
356558296982 PREDICTED: pumilio homolog 5-like [Glyci 0.959 0.960 0.547 0.0
356550736952 PREDICTED: LOW QUALITY PROTEIN: pumilio 0.946 0.976 0.549 0.0
2254433811053 PREDICTED: pumilio homolog 5 [Vitis vini 0.989 0.924 0.523 0.0
2555445061004 pumilio, putative [Ricinus communis] gi| 0.976 0.956 0.512 0.0
4494534451031 PREDICTED: pumilio homolog 5-like [Cucum 0.980 0.935 0.473 0.0
4495000991031 PREDICTED: pumilio homolog 5-like [Cucum 0.980 0.935 0.472 0.0
8071634966 pumilio domain-containing protein PPD1 [ 0.940 0.957 0.469 0.0
>gi|225463345|ref|XP_002268751.1| PREDICTED: pumilio homolog 5 [Vitis vinifera] gi|296089553|emb|CBI39372.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1181 bits (3056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1020 (60%), Positives = 743/1020 (72%), Gaps = 42/1020 (4%)

Query: 1    MATESPIRMSETSGKWPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGS 60
            MATESPIRM ETSGKWP+ K+ A FA SS+SMAAEEL LL       G+ +   PNRSGS
Sbjct: 1    MATESPIRMLETSGKWPSPKETATFAPSSSSMAAEELSLLLTDHRFFGNGRDVAPNRSGS 60

Query: 61   APPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLN 120
            APP+MEGSF AIENL++ ++SS     AN N  I N E EE+L+A+   L YY S +NLN
Sbjct: 61   APPSMEGSFAAIENLMSSQNSSLNARYANLNSLIENCEPEEQLRADPAYLAYYCSKINLN 120

Query: 121  PRLP--------RHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPK 172
            PRLP        R L   +  FGN RGLTSLD+S   S+ +SQ TLSTHKEESEDDRSP+
Sbjct: 121  PRLPPPLISWENRRLVRHIGSFGNSRGLTSLDDSGGRSLRLSQGTLSTHKEESEDDRSPQ 180

Query: 173  HFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGY------- 225
              SD+  D+ + F SG +A  +AGQ+R+ VD+ Q+DFPR+ SPVYNQS S  +       
Sbjct: 181  KPSDDWEDQSSAFWSGQDAAFLAGQHRSSVDLIQDDFPRTPSPVYNQSRSLIHGSPGKTV 240

Query: 226  ---SDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPT 282
               +DSSSL D SV +SN V++T    N G SS  + + A   +S S D T +   +P  
Sbjct: 241  EHDADSSSLHDSSVGTSNLVASTLVTDNLGPSSNANPAIAPVSNSLSLDGTGSTPPSPAL 300

Query: 283  EEVTSNDTDIWTKDEVLDRDISHSDISVIISNMKDFNTGH-SNLGNQKNQA--------- 332
             E  +++ D+  +D+VL   I+ SD     S MKD NT    N GN+KNQ          
Sbjct: 301  IERDAHNLDVHLEDDVLIGGITVSDFVSTESKMKDSNTSSLPNSGNKKNQEDWHHNRQKN 360

Query: 333  --QLNVHSQVSSSSQVENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTP 390
              Q  VH Q  +S QV+ A SQ+   G   T+I MDQ+ HG S+ ST  QPV+QSSGFTP
Sbjct: 361  WLQHQVHQQQGNSFQVQGAKSQMVFQGTNHTNINMDQYLHGSSKFSTEAQPVLQSSGFTP 420

Query: 391  PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLD 450
            PLYA+AAAYM S NPFY N+Q PG +SPQY  GG+ +N+++ PP VAGYPPHG I +  D
Sbjct: 421  PLYATAAAYMTSANPFYPNLQPPGLFSPQYSFGGFALNTAVLPPFVAGYPPHGAIPLAFD 480

Query: 451  GSAGPSFHPQPSGVSTGGSVVHGSDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEA 510
             + GPSF+ Q S VSTG S+    DMQ+LNK YGQ G++ QPSFA+PL++QY+QQPFG+ 
Sbjct: 481  NTVGPSFNAQTSAVSTGESITQAVDMQHLNKFYGQLGYAPQPSFADPLYMQYFQQPFGDV 540

Query: 511  YNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDV-QTFQHYRSGETENPSTSKVTV- 568
            Y++SGQF+PL S+GGV+GS  ++ E  + SD+A+  V +  QH RSG   N +  +  + 
Sbjct: 541  YSVSGQFDPLVSRGGVIGSQVSAFETHRESDVASCSVDKKLQHQRSGGLTNLNHRRGGIA 600

Query: 569  SPYHMGNPPNMGMFV-YPSSPLASPALPGSPVVGTGLLGGRNEMRFSPVSNR----YSGW 623
            SP + G+P NMGM + +P+SPLASP LP SP   T L GGRNE+R+ P S +    +SGW
Sbjct: 601  SPNYHGSPTNMGMLMQFPTSPLASPVLPRSPAGVTCLPGGRNEIRYPPGSGKNVGIFSGW 660

Query: 624  QGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSV 683
            QGQRG   Y+DPK  +FLEELKSGKGRRFELSDI GHIVEFSADQHGSRFIQQKLENCSV
Sbjct: 661  QGQRG---YDDPKTHSFLEELKSGKGRRFELSDIAGHIVEFSADQHGSRFIQQKLENCSV 717

Query: 684  DEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGC 743
            +EKASVFKE+LPHASKLMTDVFGNYVIQKFFE+G+P QRKELA+QL GQILPLS+QMYGC
Sbjct: 718  EEKASVFKEVLPHASKLMTDVFGNYVIQKFFEHGNPEQRKELASQLAGQILPLSLQMYGC 777

Query: 744  RVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCG 803
            RVIQKAL+ IE+EQK  LVRELDG VMRCVRDQNGNHVIQKCIE +P EKIGFIISAF  
Sbjct: 778  RVIQKALDVIELEQKTLLVRELDGHVMRCVRDQNGNHVIQKCIESVPTEKIGFIISAFRS 837

Query: 804  QVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGK 863
             VA LS HPYGCRVIQRVLEHC D+ Q QFIVDEIL+++C+LAQDQYGNYVTQHVL+RGK
Sbjct: 838  HVATLSTHPYGCRVIQRVLEHCTDELQSQFIVDEILESICSLAQDQYGNYVTQHVLERGK 897

Query: 864  PLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE--ETLLTM 921
            P ERS+II KL GHIVQLSQHKFASNV+EKCL YG   ER L+IEEI+GHNE  + LL M
Sbjct: 898  PHERSQIINKLKGHIVQLSQHKFASNVVEKCLEYGDVNERGLLIEEIIGHNEGNDNLLIM 957

Query: 922  MKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTS 981
            MKDQFANYV+QKI ++ +++Q+  +  RIR HAH LKKYTYGKHIV+RFE L GEE + S
Sbjct: 958  MKDQFANYVIQKILDICTDNQRESLFVRIRVHAHALKKYTYGKHIVSRFEQLFGEEIEAS 1017

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356530316|ref|XP_003533728.1| PREDICTED: pumilio homolog 5-like [Glycine max] Back     alignment and taxonomy information
>gi|357449403|ref|XP_003594978.1| Pumilio-like protein [Medicago truncatula] gi|355484026|gb|AES65229.1| Pumilio-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356558296|ref|XP_003547443.1| PREDICTED: pumilio homolog 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356550736|ref|XP_003543740.1| PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 6, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|225443381|ref|XP_002266669.1| PREDICTED: pumilio homolog 5 [Vitis vinifera] gi|297735758|emb|CBI18445.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255544506|ref|XP_002513314.1| pumilio, putative [Ricinus communis] gi|223547222|gb|EEF48717.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449453445|ref|XP_004144468.1| PREDICTED: pumilio homolog 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500099|ref|XP_004161004.1| PREDICTED: pumilio homolog 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|8071634|gb|AAF71823.1|AF153276_1 pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query983
TAIR|locus:2117552861 PUM6 "pumilio 6" [Arabidopsis 0.371 0.423 0.719 3e-195
TAIR|locus:2087560961 PUM5 "pumilio 5" [Arabidopsis 0.562 0.575 0.496 1.4e-135
TAIR|locus:2043187972 PUM2 "pumilio 2" [Arabidopsis 0.383 0.387 0.595 3.7e-131
TAIR|locus:2043047964 PUM3 "pumilio 3" [Arabidopsis 0.383 0.391 0.595 1.1e-129
TAIR|locus:20763241003 PUM4 "pumilio 4" [Arabidopsis 0.360 0.352 0.607 1.7e-127
TAIR|locus:2043182968 PUM1 "pumilio 1" [Arabidopsis 0.610 0.619 0.437 4.6e-121
UNIPROTKB|F1N2B81069 PUM2 "Uncharacterized protein" 0.335 0.308 0.562 7.3e-105
UNIPROTKB|B4E2B61008 PUM2 "Pumilio homolog 2" [Homo 0.335 0.327 0.562 7.3e-105
UNIPROTKB|F1SCU61064 PUM2 "Uncharacterized protein" 0.335 0.310 0.562 9.4e-105
UNIPROTKB|E2RT571063 PUM2 "Uncharacterized protein" 0.335 0.310 0.562 1.2e-104
TAIR|locus:2117552 PUM6 "pumilio 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1393 (495.4 bits), Expect = 3.0e-195, Sum P(4) = 3.0e-195
 Identities = 264/367 (71%), Positives = 306/367 (83%)

Query:   615 PVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFI 674
             P    Y GWQ Q   E  N P++CNFLEELKSGKGRRF+LSDITGHIVEFSADQHGSRFI
Sbjct:   491 PYVEAYPGWQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFI 550

Query:   675 QQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQIL 734
             QQKLENC  +EKA+VF+EILPHA KLMTDVFGNYVIQKFFEYG+  QRKELA+QL+GQI+
Sbjct:   551 QQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIV 610

Query:   735 PLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKI 794
             PLS+QMYGCRVIQKAL+ IE +Q+ +L RELDGQVMRCVRDQNGNHVIQKCIE IP +K+
Sbjct:   611 PLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKV 670

Query:   795 GFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYV 854
             GF++ AF GQV++LSMHPYGCRVIQR+LE C+  HQC+FI +EIL++VC L++DQYGNYV
Sbjct:   671 GFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYV 730

Query:   855 TQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHN 914
             TQHVL++G   ER +I RKLSGHIVQLS HKFASNVIEKCL YGG  ER+LII+EI G +
Sbjct:   731 TQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPD 790

Query:   915 EE--TLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEM 972
             E   +LL MMKDQ+ NYVVQKIFE  +  Q+  + SR+R HA  LKKYTYGKHIV+R E 
Sbjct:   791 ESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQ 850

Query:   973 LIGEENQ 979
                EENQ
Sbjct:   851 PSIEENQ 857
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0003729 "mRNA binding" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TAIR|locus:2087560 PUM5 "pumilio 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043187 PUM2 "pumilio 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043047 PUM3 "pumilio 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076324 PUM4 "pumilio 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043182 PUM1 "pumilio 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2B8 PUM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4E2B6 PUM2 "Pumilio homolog 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCU6 PUM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RT57 PUM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5E7PUM6_ARATHNo assigned EC number0.46100.84840.9686yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_701722.1
annotation not avaliable (858 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query983
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-161
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 9e-81
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 5e-74
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 3e-30
cd07920 322 cd07920, Pumilio, Pumilio-family RNA binding domai 7e-18
pfam07990365 pfam07990, NABP, Nucleic acid binding protein NABP 2e-10
smart0002536 smart00025, Pumilio, Pumilio-like repeats 5e-08
smart0002536 smart00025, Pumilio, Pumilio-like repeats 7e-08
smart0002536 smart00025, Pumilio, Pumilio-like repeats 8e-07
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 2e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 2e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 3e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-04
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 9e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 0.002
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  475 bits (1226), Expect = e-161
 Identities = 183/322 (56%), Positives = 234/322 (72%), Gaps = 4/322 (1%)

Query: 651 RFELSDI-TGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYV 709
              L DI  GHIVEF+ DQHGSRF+QQKLE  + +EK  +F EILPH  +LM D FGNYV
Sbjct: 1   SLTLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYV 60

Query: 710 IQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQV 769
           IQK FE+G+  QR +L  +++G ++ LS+ MYGCRVIQK LE+I  EQ + LV+EL G V
Sbjct: 61  IQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHV 120

Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
           +  V+DQNGNHVIQKCIE  PPE + FII AF G   ALS HPYGCRVIQR LEHC+++ 
Sbjct: 121 VELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEE- 179

Query: 830 QCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
           Q + +++EIL++   L QDQ+GNYV QHVL+ G P + S+II KL G+IVQLS HKFASN
Sbjct: 180 QREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASN 239

Query: 890 VIEKCLAYGGPAERELIIEEILGHNEET--LLTMMKDQFANYVVQKIFELSSESQQAMML 947
           V+EKCL +    ERELII+EIL    ET  L T+MKDQ+ NYV+Q   +++ E Q+ +++
Sbjct: 240 VVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLV 299

Query: 948 SRIRTHAHVLKKYTYGKHIVAR 969
             IR H   L+K  YGKHI+A+
Sbjct: 300 EAIRPHLPSLRKSPYGKHILAK 321

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 983
PF07990385 NABP: Nucleic acid binding protein NABP; InterPro: 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG2050 652 consensus Puf family RNA-binding protein [Translat 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
COG5099777 RNA-binding protein of the Puf family, translation 99.96
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.95
KOG2188650 consensus Predicted RNA-binding protein, contains 99.94
KOG2188650 consensus Predicted RNA-binding protein, contains 99.84
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.83
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.58
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.14
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.87
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.59
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.46
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.4
PRK05686339 fliG flagellar motor switch protein G; Validated 95.21
TIGR00207338 fliG flagellar motor switch protein FliG. The fliG 91.93
PRK05686339 fliG flagellar motor switch protein G; Validated 91.23
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 87.22
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 85.61
COG1536339 FliG Flagellar motor switch protein [Cell motility 83.84
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 82.75
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins Back     alignment and domain information 
Probab=100.00  E-value=2.9e-69  Score=595.79  Aligned_cols=337  Identities=28%  Similarity=0.375  Sum_probs=289.2

Q ss_pred             cccCCCCCCccccc-CCCCCccc-cccccC-CCCCCchhHHHhhcccCccCCCCccch--------------hhhhhhhh
Q 042165          274 ATISSTPPTEEVTS-NDTDIWTK-DEVLDR-DISHSDISVIISNMKDFNTGHSNLGNQ--------------KNQAQLNV  336 (983)
Q Consensus       274 ~~~~~~~~~~g~~~-~~~~~~~~-~~~~~~-~~~~~e~~~~~~~~~~~~ls~~~~~~~--------------~~~~~~~~  336 (983)
                      |+|+||+||||+|+ ..|||++. +++||+ +++++|+|||++||||||||.+++.+.              ||+|+|++
T Consensus         1 R~PSp~lpPIG~Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~~   80 (385)
T PF07990_consen    1 RAPSPCLPPIGVRVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFNV   80 (385)
T ss_pred             CCCCCCCCCccccccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhcC
Confidence            89999999999999 77777888 889999 999999999999999999999988882              66777887


Q ss_pred             c------cccccccccccccccccccCCCccccccCCCCCCCCCCCCCccccccCCCCCCC-cc--cchhccccCCCC--
Q 042165          337 H------SQVSSSSQVENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPP-LY--ASAAAYMASPNP--  405 (983)
Q Consensus       337 ~------~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~--  405 (983)
                      |      +||.++++.+++|++.                           +++++..+.+. .|  ++.++.++.++.  
T Consensus        81 q~~q~~~~Qq~~~~~se~~~l~~---------------------------~e~~~a~~~~~~s~~~~~~~s~~~~~g~~~  133 (385)
T PF07990_consen   81 QGGQNQGNQQSYMKKSESGHLNA---------------------------PELQKAAFPSGNSYFKNSNASKLSGGGGSP  133 (385)
T ss_pred             ccchhhhhhHHHhhccchhhccc---------------------------cccccccCCCccccccCCCcccccCCCCCC
Confidence            7      7788888888877641                           23334444333 33  444455544442  


Q ss_pred             -CCCCCCCCCCCCCCcCcCcccCCCCCCCCcccCCCCCCCCCcccCC-CCCCCCCCCCCCCC----CCCCc----ccCCc
Q 042165          406 -FYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDG-SAGPSFHPQPSGVS----TGGSV----VHGSD  475 (983)
Q Consensus       406 -~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~----~~~~~  475 (983)
                       .|||++.++..+     +||++||+. |+||.+++++|++|++||+ +++++|+  .+|..    +++..    +..+|
T Consensus       134 ~~~q~~~~~n~~~-----~gy~~n~~~-~s~~~~~~~~gn~p~~fd~~~~~s~~~--~~~~~s~~~g~~~~s~~~~~~~d  205 (385)
T PF07990_consen  134 FPYQNSDNPNSSF-----GGYALNPAL-PSMMASQLNNGNIPPLFDNSAAASALA--SPGMDSRSLGGGLDSGGNQGASD  205 (385)
T ss_pred             CcccCCCcccccc-----cccccCccc-hhhhhccccCCCCCccccccccchhhc--cCCCcccccCCcccccccccccc
Confidence             578888777766     999999998 9999999999999999999 8888887  55522    22211    33579


Q ss_pred             chhhhhhhccC-CCCCCCCCCChhhhhhhcCCccccccccCCCCCCCCCCCCCCCCCCcchhhcccccchhhhhhhhccC
Q 042165          476 MQYLNKIYGQF-GFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYR  554 (983)
Q Consensus       476 ~~~~~~~~~~~-~~~~~~~~~d~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (983)
                      +|+++|+|||+ |.++|+||+||+|+||||++++++++.++++||+++|+|+|++|+|++++||+||++||++||+||+ 
T Consensus       206 ~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~-  284 (385)
T PF07990_consen  206 GQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG-  284 (385)
T ss_pred             hhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC-
Confidence            99999999997 7999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCccccCC-CCCCCCC-----ccc
Q 042165          555 SGETENPSTSKVTVSPYHMGNPPNMGMF-VYPSSPLASPALPGSPVVGTGL--LGGRNEMRFSP-VSNRYSG-----WQG  625 (983)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~-----We~  625 (983)
                      +|+    .|+| ++|++||| +|.||++ +||++||++||||++|+|+++|  ++||| +||++ ||+ .+|     |+.
T Consensus       285 ~P~----~~~~-~~n~~y~g-np~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~-~R~~s~mRn-~~GG~~GsW~~  356 (385)
T PF07990_consen  285 VPL----KKSG-SMNHGYYG-NPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERN-MRFPSGMRN-SSGGSMGSWHS  356 (385)
T ss_pred             Ccc----ccCC-CCCCCCCC-CCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccc-cccCccccc-ccccccccccc
Confidence            888    5555 89999999 6779999 9999999999999999999998  88998 99999 998 522     999


Q ss_pred             cccCCCCCChhhhHHHHHHhcCcCccchHh
Q 042165          626 QRGFESYNDPKICNFLEELKSGKGRRFELS  655 (983)
Q Consensus       626 ~R~~~~~~~~~rs~lLeeL~~~~~r~~~L~  655 (983)
                      ++..+ +++.+.+.||||||++|+|+|||.
T Consensus       357 d~g~~-~d~~~~sSlLEEFKsNKtr~FELS  385 (385)
T PF07990_consen  357 DAGGN-MDENFASSLLEEFKSNKTRSFELS  385 (385)
T ss_pred             ccccc-ccccchhHHHHHHhcCCccceecC
Confidence            99887 999999999999999999999974

One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>TIGR00207 fliG flagellar motor switch protein FliG Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion] Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query983
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-111
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 1e-110
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 1e-106
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 1e-106
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 1e-105
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 1e-100
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 3e-24
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 3e-77
3k49_A 369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 1e-14
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 1e-43
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 4e-20
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 5e-42
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 3e-19
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 2e-41
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 9e-19
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 2e-41
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 1e-18
3qg9_A413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 2e-28
3k5q_A412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 2e-28
3v71_A382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 9e-28
3qgb_A413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 2e-27
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure 
Iteration: 1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/336 (55%), Positives = 254/336 (75%), Gaps = 4/336 (1%)
Query: 639 NFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHAS 698
             LE+ ++ +    +L D+ GHIVEFS DQHGSRFIQQKLE  +  E+  VF EIL  A 
Sbjct: 6   RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAY 65
Query: 699 KLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK 758
           +LMTDVFGNYVIQKFFE+GS  Q+  LA ++ G +LPL++QMYGCRVIQKALE+I  +Q+
Sbjct: 66  QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ 125
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
           +++V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV  LS HPYGCRVI
Sbjct: 126 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVI 185
Query: 819 QRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHI 878
           QR+LEHC  + Q   I++E+  +   L QDQYGNYV QHVL+ G+P ++SKI+ ++ G +
Sbjct: 186 QRILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKV 244
Query: 879 VQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIF 935
           + LSQHKFASNV+EKC+ +   AER L+I+E+   N+     L TMMKDQ+ANYVVQK+ 
Sbjct: 245 LALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 304
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
           +++  +Q+ +++ +IR H   L+KYTYGKHI+A+ E
Sbjct: 305 DMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 340
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query983
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-164
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-71
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 3e-65
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-156
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-16
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-139
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 2e-36
3bwt_A 333 Protein PUF4; pumilio, RNA binding, HO endonucleas 4e-27
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-121
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 2e-48
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 5e-35
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 1e-114
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 4e-47
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  483 bits (1245), Expect = e-164
 Identities = 188/342 (54%), Positives = 255/342 (74%), Gaps = 4/342 (1%)

Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
           LE+ ++ +    +L D+ GHIVEFS DQHGSRFIQQKLE  +  E+  VF EIL  A +L
Sbjct: 8   LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQL 67

Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
           MTDVFGNYVIQKFFE+GS  Q+  LA ++ G +LPL++QMYGCRVIQKALE+I  +Q+++
Sbjct: 68  MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 127

Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
           +V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV  LS HPYGCRVIQR
Sbjct: 128 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 187

Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
           +LEHC    Q   I++E+  +   L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++ 
Sbjct: 188 ILEHC-TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 246

Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET---LLTMMKDQFANYVVQKIFEL 937
           LSQHKFASNV+EKC+ +   AER L+I+E+   N+     L TMMKDQ+ANYVVQK+ ++
Sbjct: 247 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 306

Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
           +  +Q+ +++ +IR H   L+KYTYGKHI+A+ E    + + 
Sbjct: 307 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLKNSP 348
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query983
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3hjl_A329 Flagellar motor switch protein FLIG; armadillo rep 87.48
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
Probab=100.00  E-value=1.2e-63  Score=560.66  Aligned_cols=343  Identities=55%  Similarity=0.948  Sum_probs=328.4

Q ss_pred             hhhHHHHHHhcCcCccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhc
Q 042165          636 KICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFE  715 (983)
Q Consensus       636 ~rs~lLeeL~~~~~r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe  715 (983)
                      -|+.++|+++.++.+.++|++++|+|+++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||||||+
T Consensus         3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle   82 (351)
T 3gvo_A            3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE   82 (351)
T ss_dssp             CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred             CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence            37889999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHH
Q 042165          716 YGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIG  795 (983)
Q Consensus       716 ~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~  795 (983)
                      +++++++..|++.+.+++.+|+.|+|||||||++|+.+..+++..|++||.+++..|++|++||||+|+|+++.+++.+.
T Consensus        83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~  162 (351)
T 3gvo_A           83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ  162 (351)
T ss_dssp             HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred             hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchhHHHHHHHHH
Q 042165          796 FIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS  875 (983)
Q Consensus       796 ~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~r~~II~~L~  875 (983)
                      +|++.+.+++..|++|+|||+|||++|+++. ++++..|+++|.+++..|++|+|||||||++|++++++.+..|++.|+
T Consensus       163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~  241 (351)
T 3gvo_A          163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR  241 (351)
T ss_dssp             HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC-HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            9999999999999999999999999999986 567888999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCCH---HHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHH
Q 042165          876 GHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT  952 (983)
Q Consensus       876 g~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~---e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~  952 (983)
                      +++++|+++||||+|||+||+++++++|+.|+++|+...+   +.+..|++|+|||||||++|+.+++++|+.|++.|++
T Consensus       242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~  321 (351)
T 3gvo_A          242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP  321 (351)
T ss_dssp             TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999996321   3699999999999999999999999999999999999


Q ss_pred             hHHHHhhCCCchHHHHHHHHHhhcccC
Q 042165          953 HAHVLKKYTYGKHIVARFEMLIGEENQ  979 (983)
Q Consensus       953 ~L~~L~~~~~Gk~Vv~rlekl~~~~~~  979 (983)
                      ++..|++++||+||++++++++...++
T Consensus       322 ~~~~L~~~~~g~~i~~kl~~~~~~~~~  348 (351)
T 3gvo_A          322 HITTLRKYTYGKHILAKLEKYYLKNSP  348 (351)
T ss_dssp             GHHHHTTSTTTHHHHHHHHHHTC----
T ss_pred             HHHHHhcCCchHHHHHHHHHHHhhcCc
Confidence            999999999999999999999987664
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 983
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-113
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 5e-31
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 3e-21
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 4e-20
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  349 bits (897), Expect = e-113
 Identities = 182/335 (54%), Positives = 246/335 (73%), Gaps = 4/335 (1%)

Query: 640 FLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASK 699
            LE+ ++ +    +L +I GHI+EFS DQHGSRFIQ KLE  +  E+  VF EIL  A +
Sbjct: 5   LLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ 64

Query: 700 LMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKA 759
           LM DVFGNYVIQKFFE+GS  Q+  LA ++ G +L L++QMYGCRVIQKALE I  +Q+ 
Sbjct: 65  LMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQN 124

Query: 760 QLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQ 819
           ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV ALS HPYGCRVIQ
Sbjct: 125 EMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 184

Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
           R+LEHC        + +E+  +   L QDQYGNYV QHVL+ G+P ++SKI+ ++ G+++
Sbjct: 185 RILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 243

Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET---LLTMMKDQFANYVVQKIFE 936
            LSQHKFASNV+EKC+ +    ER ++I+E+   N+     L TMMKDQ+ANYVVQK+ +
Sbjct: 244 VLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 303

Query: 937 LSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
           ++   Q+ +++ +IR H   L+KYTYGKHI+A+ E
Sbjct: 304 VAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLE 338
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query983
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-57  Score=500.31  Aligned_cols=335  Identities=55%  Similarity=0.947  Sum_probs=323.6

Q ss_pred             hhHHHHHHhcCcCccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhcc
Q 042165          637 ICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY  716 (983)
Q Consensus       637 rs~lLeeL~~~~~r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe~  716 (983)
                      |+++++++.+++.+.++|++++|+++++|+||+|||+||++|+++++++++.||+||.+++.+||+|+||||||||||++
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~   81 (339)
T d1m8za_           2 RSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF   81 (339)
T ss_dssp             CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred             CchHhHHhhcCCCCCCcHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHHH
Q 042165          717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGF  796 (983)
Q Consensus       717 ~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~  796 (983)
                      ++++++..|++.+.+++.+|+.|+|||+|||++++.+..+++..++++|++++..+++|.+|+||+|+|++..+++.++.
T Consensus        82 ~~~~~~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~  161 (339)
T d1m8za_          82 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF  161 (339)
T ss_dssp             SCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH
T ss_pred             CCHHHHHHHHHHHHhhHHHHhcccccchHHHhhhccCCHHHHHHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchhHHHHHHHHHH
Q 042165          797 IISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSG  876 (983)
Q Consensus       797 Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~r~~II~~L~g  876 (983)
                      |++.+.+.+..+++|++||+|+|++++.+. ++++..++++|.+++..|+.|+|||||+|++|+++.++.++.|++.|++
T Consensus       162 i~~~~~~~~~~l~~~~~g~~vlq~~l~~~~-~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~  240 (339)
T d1m8za_         162 IIDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG  240 (339)
T ss_dssp             HHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcchhHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999986 5678899999999999999999999999999999999999999999999


Q ss_pred             HHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCCH---HHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042165          877 HIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTH  953 (983)
Q Consensus       877 ~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~---e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~  953 (983)
                      ++.+|+++++||+|||+||++++++.|+.++++++...+   +.|..|+.|+|||||||++|+++++++|+.|+++|+++
T Consensus       241 ~~~~l~~~k~gS~vve~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~~~i~~~l~~~  320 (339)
T d1m8za_         241 NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH  320 (339)
T ss_dssp             CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTGGG
T ss_pred             hHHHHHcchhHHHHHHHHHHhCCHHHHHHHHHHHHhcccCchHHHHHHHcCCcccHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999885432   56999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCchHHHHHHHH
Q 042165          954 AHVLKKYTYGKHIVARFEM  972 (983)
Q Consensus       954 L~~L~~~~~Gk~Vv~rlek  972 (983)
                      +.+|+.++||+||+++|++
T Consensus       321 ~~~L~~~~~G~~v~~~l~~  339 (339)
T d1m8za_         321 IATLRKYTYGKHILAKLEK  339 (339)
T ss_dssp             HHHHTTSSTHHHHHHHHC-
T ss_pred             HHHHhcCCcHHHHHHHHhC
Confidence            9999999999999999875
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure