Citrus Sinensis ID: 042171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Secondary Structure (PSIPRED)
ccccccEEEEEcccccHHHHHHHcccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccccEEEEEEEccccccHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHEEEEEEccHHHHHHHHHHcccccEEEEEEccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
MRLKLKKTIEIGVFTGYSLFLtaltipedgqiTAIDARVDHKINFIESEALSVLDQLLKdsenevnfdyafmdadkdnycnymreqvpdhfrgssKQAILDLNrslvddpcvqlshvalgesvdi
Flexible Loop (DISEMBL)
mrlklkktieigvFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLshvalgesvdi
Low Complexity Region (SEG)
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Disordered region (IsUnstruct)
*****KKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVA*******
Disordered Region (DISOPRED)
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Disordered Region (DISEMBL)
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Disordered Region (DISPRO)
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.96	0.517	0.434	2e-26
Q9C9W4	233	Tapetum-specific methyltr	no	no	0.936	0.502	0.388	4e-24
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.928	0.5	0.388	4e-23
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.506	0.370	8e-22
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.506	0.358	2e-20
O65862	247	Caffeoyl-CoA O-methyltran	no	no	1.0	0.506	0.358	3e-20
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	1.0	0.520	0.358	3e-20
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.96	0.497	0.361	3e-20
O65922	247	Caffeoyl-CoA O-methyltran	no	no	1.0	0.506	0.352	6e-20
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.96	0.463	0.345	1e-19

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 89/161 (55%), Gaps = 41/161 (25%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           +KTIE+GVFTGYSL LTALT+PEDG++ AID               A V+HKI+F ESEA
Sbjct: 67  RKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEA 126

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV----------------------P 88
           L  LD+LL +  NE  FD+AF+DADK NY NY    +                      P
Sbjct: 127 LPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP 186

Query: 89  D----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
           D     +R   K+A L+LN+ L  D  VQ+S  ALG+ + I
Sbjct: 187 DSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITI 227

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q9C9W4|TSM1_ARATH Tapetum-specific methyltransferase 1 OS=Arabidopsis thaliana GN=TSM1 PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 45/162 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K TIEIGVFTGYSLF  AL +PEDG+ITAID               A VDHKINFI+S+A
Sbjct: 70  KNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDHKINFIQSDA 129

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE------------------------- 85
           +  LDQLL   + E  +D+AF+DADK NY  ++ +                         
Sbjct: 130 VRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLIQK 187

Query: 86  --QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
             +VP H R + ++A+L+ N+ L  DP V+++ +++G+ + +
Sbjct: 188 ENEVPGHMR-AYREALLEFNKILARDPRVEIAQISIGDGLTL 228

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 46/162 (28%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K TIEIGVFTGYSL  TAL +PEDG+ITAID               A VDHKINFI S+ 
Sbjct: 70  KNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDG 129

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L  LDQL+ D   +  FD+AF DADK +Y N+                            
Sbjct: 130 LKALDQLVND---KCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAED 186

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
            + VP+H R   + A+++ N+ L  DP V++S +++G+ + +
Sbjct: 187 EDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITL 227

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL IPEDG+I A+D               A VDHK
Sbjct: 73  MLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHK 132

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F E  AL VLD+++KD +N  ++D+ F+DADKDNY NY +  +               
Sbjct: 133 IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL 192

Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + I
Sbjct: 193 WNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITI 242

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL IPEDG+I A+D               A V HK
Sbjct: 73  MLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHK 132

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F E  AL VLDQ+++D +   +FD+ F+DADKDNY NY +  +               
Sbjct: 133 IDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTL 192

Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + +
Sbjct: 193 WNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 242

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL IPEDG+I A+D               A V HK
Sbjct: 73  MLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHK 132

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F E  AL VLDQ+++D +   +FD+ F+DADKDNY NY +  +               
Sbjct: 133 IDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTL 192

Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + +
Sbjct: 193 WNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 242

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL IP+DG+I A+D               A V HK
Sbjct: 66  MLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIGLPIIEKAGVAHK 125

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I F E  AL VLDQL++D +N   +D+ F+DADKDNY NY +  +               
Sbjct: 126 IEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIGYDNTL 185

Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + +
Sbjct: 186 WNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 235

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 43/163 (26%)

Query: 3   LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
           +K KKTIE+GVFTGYSL  TAL+IP+DG+ITA+D               A V+ KI+FI 
Sbjct: 73  VKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKAGVESKISFIV 132

Query: 48  SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE---------------------- 85
           S+A+++LD LL D   + ++D+AF+DADK NY NY                         
Sbjct: 133 SDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIELVKVGGIIAYDNTLWGGTV 192

Query: 86  -----QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123
                +VPD F  ++   +  LN  L  D  + ++H+ +G+ +
Sbjct: 193 ALPESEVPD-FMKNNWVCVTKLNEILGSDARIDIAHLPVGDGI 234

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGVFTGYSL  TAL IPEDG+I A+D               A ++HK
Sbjct: 73  MLLKLINAKNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGLEHK 132

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP------------DH 90
           I F E  AL VLDQ+++D +    +D+ F+DADKDNY NY +  +               
Sbjct: 133 IEFKEGPALPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTL 192

Query: 91  FRGS---------------SKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
           + GS                +  +L+LN++L  DP +++  + +G+ + +
Sbjct: 193 WNGSVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 242

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 42/162 (25%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K T+EIGV+TGYSL  TAL +PEDG+I A+D               A V HKI+F E  A
Sbjct: 93  KNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDFREGPA 152

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV----------------------- 87
           L VLD+++ D +N   +D+ F+DADKDNY NY +  +                       
Sbjct: 153 LPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAP 212

Query: 88  PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
           PD     +    +  +L+LN++L  DP +++  + +G+ + I
Sbjct: 213 PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITI 254

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255546215	228	o-methyltransferase, putative [Ricinus c	0.952	0.521	0.450	8e-28
255546213	228	o-methyltransferase, putative [Ricinus c	0.952	0.521	0.444	1e-26
345500310	238	anthocyanin O-methyltransferase [Cyclame	0.928	0.487	0.440	5e-26
345500312	238	hypothetical protein [Cyclamen persicum	0.976	0.512	0.427	5e-26
345500308	238	hypothetical protein [Cyclamen persicum	0.928	0.487	0.433	2e-25
224122628	236	predicted protein [Populus trichocarpa]	0.992	0.525	0.423	2e-25
297803474	238	hypothetical protein ARALYDRAFT_913940 [	1.0	0.525	0.437	3e-25
356523822	230	PREDICTED: probable caffeoyl-CoA O-methy	0.936	0.508	0.431	4e-25
147840665	285	hypothetical protein VITISV_007881 [Viti	1.0	0.438	0.425	9e-25
18416703	232	putative caffeoyl-CoA O-methyltransferas	0.96	0.517	0.434	9e-25

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 94/162 (58%), Gaps = 43/162 (26%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTAL+IPEDG+ITAID               A V+HKI+F+ESEA
Sbjct: 63  KKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIGLPIIRKAGVEHKIDFMESEA 122

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L VLD+LLKD  NE +FD+AF+DADK NY NY                            
Sbjct: 123 LPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLLKVGGIVVYDNTLWGGTVAIP 182

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
            E+ P+  R   +Q  ++LN+ L  D  +Q+SH +LG+ + I
Sbjct: 183 EEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLGDGITI 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 93/162 (57%), Gaps = 43/162 (26%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTAL+IPEDG+I AID               A V+HKI+F+ESEA
Sbjct: 63  KKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIGLPIIRKAGVEHKIDFMESEA 122

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L VLD+LLK+  NE +FD+AF+DADK NY NY                            
Sbjct: 123 LPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLVKVGGIVIYDNSLWRGSVAVP 182

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
            E+ P+H R   +Q  ++ N+ L  D  VQ+SH +LG+ + I
Sbjct: 183 EEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGDGITI 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345500310|dbj|BAK74804.1| anthocyanin O-methyltransferase [Cyclamen persicum x Cyclamen purpurascens]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 90/159 (56%), Gaps = 43/159 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTALTIP DG+I AID               A V+HKINF+   A
Sbjct: 73  KKTIEVGVFTGYSLLLTALTIPNDGKILAIDPDQEAYDLGLPVIKRAGVEHKINFVAEAA 132

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L VLD+LL D ENE +FD+AF+DADK+NY NY                            
Sbjct: 133 LPVLDKLLIDPENEGSFDFAFVDADKENYLNYHERLLKLVKLGGVIVYDNTLWFGTVALP 192

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGES 122
            + V + +R   K A L++N++L  DP +QL+HV +G+ 
Sbjct: 193 EDSVKEGWRHGRKTA-LEVNKALTSDPRIQLAHVPVGDG 230

Source: Cyclamen persicum x Cyclamen purpurascens

Species: Cyclamen persicum x Cyclamen purpurascens

Genus: Cyclamen

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345500312|dbj|BAK74805.1| hypothetical protein [Cyclamen persicum x Cyclamen purpurascens]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 91/166 (54%), Gaps = 44/166 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   KK IEIGV+TGYSL LTAL IP+DG+I AID               A V+HK
Sbjct: 65  MFLKLVNAKKAIEIGVYTGYSLLLTALAIPDDGEIVAIDVNRKAFDIGLPIIQKAGVEHK 124

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY-------------------- 82
           INFIES  L  LD+LL+D +NE  FD+A++DADK NY NY                    
Sbjct: 125 INFIESAGLPALDKLLEDQKNEGTFDFAYIDADKANYLNYHERILKLVRVGGVIAYDNTL 184

Query: 83  ------MREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGES 122
                 M E+    F    ++  ++LN+SL  DP +Q+SHV +G+ 
Sbjct: 185 WNGSVAMPEECVPEFYKPGRKLTMELNKSLAADPRIQISHVPVGDG 230

Source: Cyclamen persicum x Cyclamen purpurascens

Species: Cyclamen persicum x Cyclamen purpurascens

Genus: Cyclamen

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345500308|dbj|BAK74803.1| hypothetical protein [Cyclamen persicum x Cyclamen purpurascens]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 89/159 (55%), Gaps = 43/159 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTALTIP DG+I AID                 V+HKINF+   A
Sbjct: 73  KKTIEVGVFTGYSLLLTALTIPNDGKILAIDPDQEAYDLGLPVIKRTGVEHKINFVAEAA 132

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L VLD+LL D ENE +FD+AF+DADK+NY NY                            
Sbjct: 133 LPVLDKLLIDPENEGSFDFAFVDADKENYLNYHERLLKLVKLGGVIVYDNTLWFGTVALP 192

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGES 122
            + V + +R   K A L++N++L  DP +QL+HV +G+ 
Sbjct: 193 EDSVKEGWRHGRKTA-LEVNKALTSDPRIQLAHVPVGDG 230

Source: Cyclamen persicum x Cyclamen purpurascens

Species: Cyclamen persicum x Cyclamen purpurascens

Genus: Cyclamen

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 46/170 (27%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   +KTIE+GVFTGYSL LTAL+IP+DG+ITAID               A V+HK
Sbjct: 63  MLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEIGLPIIRNAGVEHK 122

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY-------------------- 82
           INFIESEA  +LD+LL+D  NE +FD+AF+DADK NY NY                    
Sbjct: 123 INFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVVYDNTL 182

Query: 83  -------MREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                    E  P++ + + +Q  ++ N+ L  D  VQ+SH   G+ + I
Sbjct: 183 WGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSGDGITI 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 92/169 (54%), Gaps = 44/169 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR---------------VDHK 42
           M LKL   +KTIE+GVFTGYSL LTALT+PEDG++ AID                 V+HK
Sbjct: 65  MLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIGLPVIKKVGVEHK 124

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F ESEAL  LD+LL D  NE  FD+AF+DADK NY NY    +               
Sbjct: 125 IDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLIKVGGIIVYDNTL 184

Query: 88  -------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                  PD     +R   K+A L+LN+ L  D  VQ+S  ALG+ + I
Sbjct: 185 WGGSVAEPDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITI 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523822|ref|XP_003530533.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 91/160 (56%), Gaps = 43/160 (26%)

Query: 8   TIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS 52
           TIE+GVFTGYSL LTALTIP+DG+I A+D               A V+HKI+FIES AL 
Sbjct: 67  TIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALP 126

Query: 53  VLDQLLKDSENEVNFDYAFMDADKDNYCNY---------------------------MRE 85
           VLD+L++D  N+ +FD+AF+DADKDNY NY                             E
Sbjct: 127 VLDKLIEDPSNKESFDFAFVDADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEE 186

Query: 86  QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
            VP   R   +QA L  N+++ DD CV++S V++G+   I
Sbjct: 187 DVPAPKR-KFRQAALAFNKAIADDSCVEISAVSIGDGFTI 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840665|emb|CAN62003.1| hypothetical protein VITISV_007881 [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 95/174 (54%), Gaps = 49/174 (28%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   KKTIEIGVFTGYSL LTAL+IP+DG+I AID               A V+HK
Sbjct: 107 MLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGVEHK 166

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY-------------------- 82
           INFIES+AL VLD+LL+D ENE + D+AF+DADK NY NY                    
Sbjct: 167 INFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYDNTL 226

Query: 83  -----------MREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                      + E V   ++   ++ I++LN+ L  D  VQ+    LG+ + I
Sbjct: 227 WHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICVAPLGDGITI 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416703|ref|NP_567739.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|30580368|sp|Q9C5D7.1|CAMT3_ARATH RecName: Full=Probable caffeoyl-CoA O-methyltransferase At4g26220; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|13430810|gb|AAK26027.1|AF360317_1 putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|15810549|gb|AAL07162.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|332659772|gb|AEE85172.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 89/161 (55%), Gaps = 41/161 (25%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           +KTIE+GVFTGYSL LTALT+PEDG++ AID               A V+HKI+F ESEA
Sbjct: 67  RKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEA 126

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV----------------------P 88
           L  LD+LL +  NE  FD+AF+DADK NY NY    +                      P
Sbjct: 127 LPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP 186

Query: 89  D----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
           D     +R   K+A L+LN+ L  D  VQ+S  ALG+ + I
Sbjct: 187 DSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITI 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.616	0.331	0.576	1.7e-25
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.648	0.347	0.520	1.2e-24
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.616	0.331	0.536	2.4e-24
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.656	0.316	0.474	3.2e-21
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.616	0.263	0.489	1.3e-18
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.664	0.329	0.417	3.2e-13
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.672	0.293	0.34	5.9e-12
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.632	0.314	0.4	1.4e-11
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.632	0.272	0.357	2e-11
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.632	0.295	0.410	2.1e-11

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 53/92 (57%), Positives = 64/92 (69%)

Query:     6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
             +KTIE+GVFTGYSL LTALT+PEDG++ AID               A V+HKI+F ESEA
Sbjct:    67 RKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEA 126

Query:    51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
             L  LD+LL +  NE  FD+AF+DADK NY NY
Sbjct:   127 LPALDELLNNKVNEGGFDFAFVDADKLNYWNY 158

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 51/98 (52%), Positives = 64/98 (65%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             +  K TIEIGVFTGYSLF  AL +PEDG+ITAID               A VDHKINFI+
Sbjct:    67 INAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDHKINFIQ 126

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE 85
             S+A+  LDQLL   + E  +D+AF+DADK NY  ++ +
Sbjct:   127 SDAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEK 162

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 51/95 (53%), Positives = 60/95 (63%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             +  K TIEIGVFTGYSL  TAL +PEDG+ITAID               A VDHKINFI 
Sbjct:    67 MNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH 126

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
             S+ L  LDQL+ D   +  FD+AF DADK +Y N+
Sbjct:   127 SDGLKALDQLVND---KCEFDFAFADADKSSYVNF 158

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
 Identities = 46/97 (47%), Positives = 61/97 (62%)

Query:     6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
             K T+EIGV+TGYSL  TAL +PEDG+I A+D               A V HKI+F E  A
Sbjct:    93 KNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDFREGPA 152

Query:    51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV 87
             L VLD+++ D +N   +D+ F+DADKDNY NY +  +
Sbjct:   153 LPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLI 189

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 200 (75.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 45/92 (48%), Positives = 57/92 (61%)

Query:     6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
             K TIE+GVFTG S+  TAL IP+DG++ AID               A V HK++F E  A
Sbjct:   126 KNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAA 185

Query:    51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
             + +LD LL + ENE  FD+AF+DADK NY  Y
Sbjct:   186 MPILDNLLANEENEGKFDFAFVDADKGNYGEY 217

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 141 (54.7 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 43/103 (41%), Positives = 58/103 (56%)

Query:     1 MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
             M LK+   K+TIE+GVFTGYSL  TAL +PEDG++ AID               A V HK
Sbjct:    75 MLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAGVAHK 134

Query:    43 INFIESEALSVLDQLLKDSENEVNFDYAFMDADKD-NYCNYMR 84
             ++F E + L  LD+LL + E     + AF  A  D +  NY++
Sbjct:   135 VDFREGKGLEKLDELLAE-EAAAGREAAFDFAFVDADKPNYVK 176

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 34/100 (34%), Positives = 55/100 (55%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             ++  KTIEIG++TGY+    AL +PE+G++ A +               A V++KI+   
Sbjct:   125 IEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKIDIRL 184

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV 87
               A+  LD+LL   E  + +D+ F+DADK NY  Y  + +
Sbjct:   185 KPAVETLDELLSAGEAGM-YDFVFIDADKKNYETYYEKSL 223

GO:0008171 "O-methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 38/95 (40%), Positives = 56/95 (58%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             L  KK I++GV+TG S    AL++P+DG++T+ID               A VDHKIN + 
Sbjct:    76 LNAKKAIDVGVYTGLSSLSFALSMPDDGKVTSIDCVRDYEECCHLHWKKANVDHKINLVI 135

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
               A + L +L+ + E+   FD+ F+DADKD+Y  Y
Sbjct:   136 DNAKNHLQKLIDNGESGT-FDFIFIDADKDSYDAY 169

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
 Identities = 34/95 (35%), Positives = 49/95 (51%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             L  K+ IE+GV+TGYS    AL +PE G++ A D               A V HK+    
Sbjct:   129 LGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDKDANALEVAKRYYELAGVSHKVTVKH 188

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
               A   L  ++++ E E ++D+AF+DADK  Y  Y
Sbjct:   189 GLAAESLMSMIQNGE-ESSYDFAFLDADKAMYQEY 222

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 39/95 (41%), Positives = 53/95 (55%)

Query:     3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
             +K KK IE+GV TGY+    AL +P++G++ A D               A VDHKI+   
Sbjct:   106 IKAKKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRI 165

Query:    48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
               A   LD+LL   E E  FD+AF+DADK++Y  Y
Sbjct:   166 KPATQTLDELLAGGEAET-FDFAFIDADKESYNEY 199

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_701682.1 annotation not avaliable (238 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	5e-38
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	4e-33
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	3e-26
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	5e-13
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	3e-12
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	5e-04

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  127 bits (321), Expect = 5e-38
 Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 47/168 (27%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M +K+   K T+EIGVFTGYSL  TAL +PEDG+ITAID               A VDHK
Sbjct: 62  MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHK 121

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR------------------ 84
           INFI+S+ALS LDQLL +      FD+AF+DADK NY ++                    
Sbjct: 122 INFIQSDALSALDQLLNNDPKP-EFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTL 180

Query: 85  ---------EQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123
                    ++VP+H R + ++A+L+ N+ L  DP V++S +++G+ V
Sbjct: 181 WFGFVAQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDGV 227

Length = 234

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  114 bits (287), Expect = 4e-33
 Identities = 58/168 (34%), Positives = 79/168 (47%), Gaps = 52/168 (30%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K+T+EIGVFTGYSL  TAL +PEDG+ITA D               A V  K
Sbjct: 38  MLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIGLPFIQKAGVADK 97

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE----------------- 85
           I+F   +AL  L++L+KD      FD+ F+DADK NY NY                    
Sbjct: 98  ISFRLGDALPTLEELVKDKPLG-EFDFIFVDADKSNYPNYYERLLELVKVGGLIAIDNTL 156

Query: 86  ----------QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123
                     +VP          + +LN+ L  D  V++S + +G+ +
Sbjct: 157 WFGKVAEPDDEVPKT------VRVRELNKLLASDERVEISMLPVGDGI 198

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score = 97.8 bits (243), Expect = 3e-26
 Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 45/170 (26%)

Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL +PEDG+I A+D               A V HK
Sbjct: 73  MLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHK 132

Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F E  AL VLDQ+++D +    FD+ F+DADKDNY NY +  +               
Sbjct: 133 IDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTL 192

Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + +
Sbjct: 193 WNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITL 242

Length = 247

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 21/99 (21%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES-E 49
           K+ +EIG   GYS    AL +P+DG++T I+               A VD +I  +   +
Sbjct: 61  KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120

Query: 50  ALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP 88
           AL VL +LL  S     FD  F+DADK +Y  Y+   +P
Sbjct: 121 ALDVLSRLLDGS-----FDLVFIDADKADYPEYLERALP 154

Length = 219

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score = 60.8 bits (147), Expect = 3e-12
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 37/159 (23%)

Query: 3   LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
           L  ++ IE+GV+TGYS    AL +PE G + A +               A V HK+N   
Sbjct: 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH 176

Query: 48  SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR--------------------EQV 87
             A   L  ++++ E   ++D+AF+DADK  Y +Y                       +V
Sbjct: 177 GLAAESLKSMIQNGE-GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRV 235

Query: 88  PDHFRGSSKQ-AILDLNRSLVDDPCVQLSHVALGESVDI 125
            D     +K  +I + N+ L+DD  V +S V +G+ + I
Sbjct: 236 ADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTI 274

Length = 278

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 20/82 (24%)

Query: 9  IEIGVFTGYSLFLTALTIPE--DGQITAID-------------ARVDHKINFIESEALSV 53
          +EIGV++G S    A  + +   G++ +ID             A +  ++  +  ++L  
Sbjct: 1  VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAGLADRVRLLRGDSLEA 60

Query: 54 LDQLLKDSENEVNFDYAFMDAD 75
          L +L   S      D  F+D D
Sbjct: 61 LARLPDGS-----IDLLFIDGD 77

This family appears to be a methyltransferase domain. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.97
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.96
PLN02476	278	O-methyltransferase	99.95
COG4122	219	Predicted O-methyltransferase [General function pr	99.95
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.94
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.93
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.28
COG4123	248	Predicted O-methyltransferase [General function pr	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.22
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.21
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.19
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.17
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.15
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.14
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.14
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.11
PRK04457	262	spermidine synthase; Provisional	99.11
PLN03075	296	nicotianamine synthase; Provisional	99.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.1
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.09
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.08
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.06
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.03
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.02
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.01
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.0
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.99
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.95
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.94
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.91
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.91
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.91
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.9
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.89
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.87
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.86
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.85
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.85
COG2890	280	HemK Methylase of polypeptide chain release factor	98.84
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.84
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.83
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.83
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.81
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.8
PRK00811	283	spermidine synthase; Provisional	98.79
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.77
PRK07402	196	precorrin-6B methylase; Provisional	98.76
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.76
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.76
PLN02244	340	tocopherol O-methyltransferase	98.75
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.72
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.71
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.71
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.7
PTZ00146	293	fibrillarin; Provisional	98.69
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.68
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.67
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.67
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.67
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.66
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.65
PLN02366	308	spermidine synthase	98.65
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.64
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.64
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.64
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.63
PRK01581	374	speE spermidine synthase; Validated	98.62
PRK04266	226	fibrillarin; Provisional	98.61
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.61
KOG2904	328	consensus Predicted methyltransferase [General fun	98.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.6
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.59
PRK06922	677	hypothetical protein; Provisional	98.57
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.56
PRK11207	197	tellurite resistance protein TehB; Provisional	98.56
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.55
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.55
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.55
PLN02672	1082	methionine S-methyltransferase	98.55
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.55
PHA03412	241	putative methyltransferase; Provisional	98.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.53
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.52
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.5
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.49
PRK06202	232	hypothetical protein; Provisional	98.49
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.49
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.49
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.49
PRK05785	226	hypothetical protein; Provisional	98.49
TIGR00438	188	rrmJ cell division protein FtsJ.	98.48
PRK08317	241	hypothetical protein; Provisional	98.48
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.48
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.48
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.48
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.47
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.47
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.47
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.47
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.46
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.45
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.43
COG2521	287	Predicted archaeal methyltransferase [General func	98.42
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.42
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.42
PLN02336	475	phosphoethanolamine N-methyltransferase	98.41
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.41
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.41
PRK12335	287	tellurite resistance protein TehB; Provisional	98.41
PRK14967	223	putative methyltransferase; Provisional	98.4
PLN02823	336	spermine synthase	98.4
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.39
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.39
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.38
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.34
PRK03612	521	spermidine synthase; Provisional	98.34
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.34
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.34
PHA03411	279	putative methyltransferase; Provisional	98.32
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.32
PRK14968	188	putative methyltransferase; Provisional	98.31
PLN02490	340	MPBQ/MSBQ methyltransferase	98.3
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.29
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.29
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.25
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.24
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.24
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.23
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.23
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.23
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.23
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.23
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.22
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.22
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.22
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	98.22
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.18
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.17
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.15
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.15
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.15
PLN02336	475	phosphoethanolamine N-methyltransferase	98.14
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.13
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.13
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.12
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.11
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.1
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.1
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.09
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.09
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.08
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.07
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.06
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.05
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.05
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.05
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.04
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.0
TIGR03438	301	probable methyltransferase. This model represents	97.97
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.94
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.94
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.93
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.93
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.91
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.88
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.86
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.84
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.82
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.81
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.81
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.81
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.77
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.71
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.7
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.66
PRK10742	250	putative methyltransferase; Provisional	97.63
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.57
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.54
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.53
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.52
KOG2730	263	consensus Methylase [General function prediction o	97.52
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.51
PRK04148	134	hypothetical protein; Provisional	97.51
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.5
KOG4300	252	consensus Predicted methyltransferase [General fun	97.47
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.43
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.43
KOG1271	227	consensus Methyltransferases [General function pre	97.4
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.34
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.32
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.29
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.21
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.14
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.14
KOG2899	288	consensus Predicted methyltransferase [General fun	97.13
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.0
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	96.97
PF13679	141	Methyltransf_32: Methyltransferase domain	96.91
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.85
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.84
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.72
KOG3010	261	consensus Methyltransferase [General function pred	96.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.59
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.57
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.5
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	96.45
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.43
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.39
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.38
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.38
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.36
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.3
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.27
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.24
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.24
PHA01634	156	hypothetical protein	95.95
COG4076	252	Predicted RNA methylase [General function predicti	95.93
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.9
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.85
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.8
COG2520	341	Predicted methyltransferase [General function pred	95.8
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.68
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.64
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.64
PRK00536	262	speE spermidine synthase; Provisional	95.6
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.46
KOG3115	249	consensus Methyltransferase-like protein [General	95.42
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.3
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.86
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.7
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.59
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.45
COG3897	218	Predicted methyltransferase [General function pred	94.28
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.23
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.22
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	94.12
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.06
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.86
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.78
KOG2361	264	consensus Predicted methyltransferase [General fun	93.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	93.4
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	92.94
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	92.75
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	92.18
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	92.07
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	91.75
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	90.64
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	89.84
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	89.59
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	89.45
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	88.62
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.59
KOG3201	201	consensus Uncharacterized conserved protein [Funct	87.49
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	87.23
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	86.24
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	85.55
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	84.27
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	84.0
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	83.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	83.23
PLN02668	386	indole-3-acetate carboxyl methyltransferase	82.53
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	81.65
KOG2912	419	consensus Predicted DNA methylase [Function unknow	81.54
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	81.18
KOG2352	482	consensus Predicted spermine/spermidine synthase [	81.13
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	80.81
KOG2940	325	consensus Predicted methyltransferase [General fun	80.27

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.97  E-value=6.1e-31  Score=192.71  Aligned_cols=122  Identities=38%  Similarity=0.668  Sum_probs=101.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|++||||||++||||+|||+++|++|+|+++|               +|+.++|+++.||+.+.++.+..+. +.++|
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~f  122 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQF  122 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCce
Confidence            5799999999999999999999999899999999               7888999999999999999886431 13589


Q ss_pred             eEEEEcCCCcCCHHHHhh--------------hC-------CCCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           68 DYAFMDADKDNYCNYMRE--------------QV-------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~--------------~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      ||||+|++|++|..||+.              |+       .+........++++||++|.+||+|++++||+|||+.|
T Consensus       123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l  201 (205)
T PF01596_consen  123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTL  201 (205)
T ss_dssp             EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEE
T ss_pred             eEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEE
Confidence            999999999999999982              21       11112236667999999999999999999999999975

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.96  E-value=3.3e-28  Score=182.62  Aligned_cols=123  Identities=44%  Similarity=0.769  Sum_probs=102.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|++||||||++||||+|||++++++|+|+++|               +|+.++|+++.|++.+.++.+..+....++|
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            4789999999999999999999998899999999               7888999999999999999875321012689


Q ss_pred             eEEEEcCCCcCCHHHHhh--------------hC------CCCC--Cc-c----hHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171           68 DYAFMDADKDNYCNYMRE--------------QV------PDHF--RG-S----SKQAILDLNRSLVDDPCVQLSHVALG  120 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~--------------~~------~~~~--~~-~----~~~~~~~~~~~l~~~~~~~~~~lp~~  120 (125)
                      ||||+|++|.+|+.||+.              |+      .+..  .. .    ..+++++||+.|.++|+|++++||+|
T Consensus       158 D~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPig  237 (247)
T PLN02589        158 DFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVG  237 (247)
T ss_pred             cEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeC
Confidence            999999999999999982              21      0110  10 1    13468999999999999999999999


Q ss_pred             CcccC
Q 042171          121 ESVDI  125 (125)
Q Consensus       121 ~G~~i  125 (125)
                      ||+.|
T Consensus       238 DGl~l  242 (247)
T PLN02589        238 DGITL  242 (247)
T ss_pred             CccEE
Confidence            99975

>PLN02476 O-methyltransferase

Probab=99.95  E-value=6.6e-28  Score=183.41  Aligned_cols=122  Identities=35%  Similarity=0.620  Sum_probs=103.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++++||||||++||||+|||++++++|+|+++|               +|+.++|+++.||+.+.|+.+..+ +..++|
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~F  195 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSY  195 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCC
Confidence            4789999999999999999999998889999999               788889999999999999887432 113689


Q ss_pred             eEEEEcCCCcCCHHHHhh--------------hC------CC-CCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           68 DYAFMDADKDNYCNYMRE--------------QV------PD-HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~--------------~~------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      ||||+|++|++|++||+.              |+      .+ ..++..+.++++||+.+.++|+|++++||+|||++|
T Consensus       196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i  274 (278)
T PLN02476        196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTI  274 (278)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEE
Confidence            999999999999999992              21      11 111235678999999999999999999999999975

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=176.43  Aligned_cols=118  Identities=36%  Similarity=0.640  Sum_probs=101.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEe-cchHHHHHHHhhcCCCCCc
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE-SEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~-gd~~~~l~~~~~~~~~~~~   66 (125)
                      .++++||||||+.||||+|||.++|.++++++||               +|+.++|+++. ||+.+.+..+     ..++
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~  132 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGS  132 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCC
Confidence            5789999999999999999999999889999999               78989999999 6999988752     1589


Q ss_pred             eeEEEEcCCCcCCHHHHhh--------------hC------CCC-CCc--chHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171           67 FDYAFMDADKDNYCNYMRE--------------QV------PDH-FRG--SSKQAILDLNRSLVDDPCVQLSHVALGESV  123 (125)
Q Consensus        67 fD~v~id~~~~~~~~~~~~--------------~~------~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~  123 (125)
                      ||+||+|++|.+|++||+.              |+      .+. .+.  ...+++++|++.+.++|+++++++|+|||+
T Consensus       133 fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl  212 (219)
T COG4122         133 FDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGL  212 (219)
T ss_pred             ccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCce
Confidence            9999999999999999992              22      111 112  255669999999999999999999999999


Q ss_pred             cC
Q 042171          124 DI  125 (125)
Q Consensus       124 ~i  125 (125)
                      .|
T Consensus       213 ~v  214 (219)
T COG4122         213 LL  214 (219)
T ss_pred             EE
Confidence            75

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.94  E-value=3.5e-26  Score=170.43  Aligned_cols=122  Identities=51%  Similarity=0.860  Sum_probs=101.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++++|||||||+||+++||+++++++++|+++|               +++.++|+++.||+.+.++.+..+. +.++|
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-~~~~f  145 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-PKPEF  145 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-CCCCC
Confidence            4789999999999999999999998789999999               6788899999999999988774321 13689


Q ss_pred             eEEEEcCCCcCCHHHHhhh--------------C------CCCC---Cc---chHHHHHHHHHHhhcCCCeEEEEeecCC
Q 042171           68 DYAFMDADKDNYCNYMREQ--------------V------PDHF---RG---SSKQAILDLNRSLVDDPCVQLSHVALGE  121 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~~--------------~------~~~~---~~---~~~~~~~~~~~~l~~~~~~~~~~lp~~~  121 (125)
                      |+||+|++++.|+.|++..              +      .+..   +.   ...+++++|+++|.++|+|++++||+||
T Consensus       146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gd  225 (234)
T PLN02781        146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGD  225 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence            9999999999999999831              1      0100   00   1467899999999999999999999999


Q ss_pred             cccC
Q 042171          122 SVDI  125 (125)
Q Consensus       122 G~~i  125 (125)
                      |++|
T Consensus       226 G~~i  229 (234)
T PLN02781        226 GVTL  229 (234)
T ss_pred             ccEE
Confidence            9975

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=1e-25  Score=165.82  Aligned_cols=122  Identities=50%  Similarity=0.830  Sum_probs=106.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|+++||||++||||++.+|.++|++|+|+++|               ++..++|++++|.+.+.|+++.++. +.++|
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tf  150 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTF  150 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCce
Confidence            4799999999999999999999999999999999               7888999999999999999987764 46889


Q ss_pred             eEEEEcCCCcCCHHHHhh--------------hC--------CCCCCcchHHHHH---HHHHHhhcCCCeEEEEeecCCc
Q 042171           68 DYAFMDADKDNYCNYMRE--------------QV--------PDHFRGSSKQAIL---DLNRSLVDDPCVQLSHVALGES  122 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~--------------~~--------~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lp~~~G  122 (125)
                      ||+|+|++|.+|..|++.              |+        |+...+.+...++   +||++|.+|||+..+.+|+|||
T Consensus       151 DfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG  230 (237)
T KOG1663|consen  151 DFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG  230 (237)
T ss_pred             eEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence            999999999999999882              21        1111113677788   9999999999999999999999


Q ss_pred             ccC
Q 042171          123 VDI  125 (125)
Q Consensus       123 ~~i  125 (125)
                      +.|
T Consensus       231 ~~i  233 (237)
T KOG1663|consen  231 ITI  233 (237)
T ss_pred             eee
Confidence            875

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.28  E-value=4e-11  Score=78.56  Aligned_cols=63  Identities=17%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++++++..+ +.+|+++|               .+..++|+++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            357999999999999999999666 79999999               36678999999999 332222      46799


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++..
T Consensus        73 ~v~~~~   78 (112)
T PF12847_consen   73 LVICSG   78 (112)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999977

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=1.2e-11  Score=92.94  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..++.+|++.+ ..+|++||               +++.+||+++++|..++.+...     ..+||
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~fD  117 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASFD  117 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----ccccC
Confidence            467999999999999999999987 49999999               6788999999999999876642     45799


Q ss_pred             EEEEcCCCcCCHHHHhhhCCC----------CCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171           69 YAFMDADKDNYCNYMREQVPD----------HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV  123 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~  123 (125)
                      +|++      +|+||+.+...          +......+..-+...++.++.+..+.++|-..+.
T Consensus       118 ~Ii~------NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~  176 (248)
T COG4123         118 LIIC------NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA  176 (248)
T ss_pred             EEEe------CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH
Confidence            9996      89999855331          1111345556666677777888888888766553

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=4.5e-11  Score=87.79  Aligned_cols=73  Identities=16%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.+..+++.++++++|+++|               .++ .+++++.+|+.+.++.       ..+||
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~-------~~~fD  147 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE-------NAPYD  147 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc-------CCCcC
Confidence            457999999999999999999987679999999               234 5799999999765432       47899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      .|++++.....++-+.
T Consensus       148 ~I~~~~~~~~~~~~l~  163 (212)
T PRK13942        148 RIYVTAAGPDIPKPLI  163 (212)
T ss_pred             EEEECCCcccchHHHH
Confidence            9999988766654433

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.21  E-value=5.8e-11  Score=86.70  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=57.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||||||+|+.+..+++.+++.++|+++|               .++..+++++.+|+.+.++.       ..+||.
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~  145 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDA  145 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccE
Confidence            46999999999999999999987678999999               34545799999999876542       468999


Q ss_pred             EEEcCCCcCCHH
Q 042171           70 AFMDADKDNYCN   81 (125)
Q Consensus        70 v~id~~~~~~~~   81 (125)
                      |++++.....++
T Consensus       146 Ii~~~~~~~~~~  157 (205)
T PRK13944        146 IIVTAAASTIPS  157 (205)
T ss_pred             EEEccCcchhhH
Confidence            999987655544

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.19  E-value=7.5e-11  Score=86.51  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.|++..+++++|+++|               .++ ++++++.+|+.+.++.       ..+||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCC
Confidence            456999999999999999999987678999999               344 5799999999876432       36899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++++.....++.+.
T Consensus       149 ~Ii~~~~~~~~~~~~~  164 (215)
T TIGR00080       149 RIYVTAAGPKIPEALI  164 (215)
T ss_pred             EEEEcCCcccccHHHH
Confidence            9999988777665544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.17  E-value=5.3e-11  Score=87.62  Aligned_cols=73  Identities=16%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+||.|..|++.+++.++|+++|               .+. .+|+++.+|+...++.       ..+||
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~-------~apfD  143 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPE-------EAPFD  143 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGG-------G-SEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhcccc-------CCCcC
Confidence            346999999999999999999988789999999               234 4899999999877664       47899


Q ss_pred             EEEEcCCCcCCH-HHHh
Q 042171           69 YAFMDADKDNYC-NYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~-~~~~   84 (125)
                      .|++.++.+..| .|++
T Consensus       144 ~I~v~~a~~~ip~~l~~  160 (209)
T PF01135_consen  144 RIIVTAAVPEIPEALLE  160 (209)
T ss_dssp             EEEESSBBSS--HHHHH
T ss_pred             EEEEeeccchHHHHHHH
Confidence            999999887765 4555

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.15  E-value=2.5e-10  Score=85.49  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||||..|+.+++..+ .++|+++|               .+... |++++|||+++ | +     ++++||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccC
Confidence            468999999999999999999999 89999999               23333 99999999876 5 5     378999


Q ss_pred             EEEEcCCCcCCH
Q 042171           69 YAFMDADKDNYC   80 (125)
Q Consensus        69 ~v~id~~~~~~~   80 (125)
                      +|.+...-++.+
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            999987766554

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.3e-10  Score=85.37  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+||.|..||+..   ++|+++|               .|+ .+|++++||...-+|.       ..+||
T Consensus        72 ~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~-------~aPyD  140 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPE-------EAPYD  140 (209)
T ss_pred             CCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCC-------CCCcC
Confidence            45799999999999999999985   4999999               455 3599999999988775       58999


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      .|++.++....|+-|-
T Consensus       141 ~I~Vtaaa~~vP~~Ll  156 (209)
T COG2518         141 RIIVTAAAPEVPEALL  156 (209)
T ss_pred             EEEEeeccCCCCHHHH
Confidence            9999999887765444

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.14  E-value=9.3e-10  Score=79.45  Aligned_cols=73  Identities=25%  Similarity=0.305  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+++|||||||..++.++...| .++|++||               .++ +++++++|++.+.|+.+       .+||
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~~~d  104 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------PSPD  104 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------CCCC
Confidence            446899999999999999995555 89999999               564 89999999999987753       4799


Q ss_pred             EEEEcCCCcCCHHHHhhh
Q 042171           69 YAFMDADKDNYCNYMREQ   86 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~   86 (125)
                      .||+.+. .+.+..++.+
T Consensus       105 aiFIGGg-~~i~~ile~~  121 (187)
T COG2242         105 AIFIGGG-GNIEEILEAA  121 (187)
T ss_pred             EEEECCC-CCHHHHHHHH
Confidence            9999999 7888887744

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.11  E-value=2.4e-10  Score=82.19  Aligned_cols=70  Identities=20%  Similarity=0.296  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|++++.+++..+ +++|+++|               .++ ++++++++|+.+. +.       .++||
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~-~~-------~~~fD  111 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDF-QH-------EEQFD  111 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhc-cc-------cCCcc
Confidence            467999999999999999998665 68999999               344 4699999999875 21       47899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++++ ...++.+++
T Consensus       112 ~I~s~~-~~~~~~~~~  126 (181)
T TIGR00138       112 VITSRA-LASLNVLLE  126 (181)
T ss_pred             EEEehh-hhCHHHHHH
Confidence            999987 444555555

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK04457 spermidine synthase; Provisional

Probab=99.11  E-value=4.8e-10  Score=84.94  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC---CCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR---VDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~---~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++++|||||||+|.++.++++..| +.+++++|            .+   ..++++++.+|+.+.++..      .++||
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD  138 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD  138 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence            578999999999999999999887 79999999            12   2478999999999987653      46899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++|+...
T Consensus       139 ~I~~D~~~~  147 (262)
T PRK04457        139 VILVDGFDG  147 (262)
T ss_pred             EEEEeCCCC
Confidence            999998643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.11  E-value=2.5e-10  Score=87.85  Aligned_cols=74  Identities=15%  Similarity=0.215  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID----------------ARVDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +|++|+||||| .|+++++++.+..++++++++|                .++.++++|+.+|+.+..+.       .+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~~  195 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LKE  195 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cCC
Confidence            78999999999 6677888887665589999999                35668899999999886332       367


Q ss_pred             eeEEEEcC----CCcCCHHHHh
Q 042171           67 FDYAFMDA----DKDNYCNYMR   84 (125)
Q Consensus        67 fD~v~id~----~~~~~~~~~~   84 (125)
                      ||+||+++    ++..+..+++
T Consensus       196 FDlVF~~ALi~~dk~~k~~vL~  217 (296)
T PLN03075        196 YDVVFLAALVGMDKEEKVKVIE  217 (296)
T ss_pred             cCEEEEecccccccccHHHHHH
Confidence            99999996    2455666666

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.10  E-value=6.9e-10  Score=80.44  Aligned_cols=76  Identities=25%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.+++.++|+++|               .++.++++++.+|+.+.++.+      .++||
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~~~D  113 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NEKFD  113 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CCCCC
Confidence            346899999999999999999886678999999               344578999999998876653      36799


Q ss_pred             EEEEcCCCcCCHHHHhh
Q 042171           69 YAFMDADKDNYCNYMRE   85 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~   85 (125)
                      .||++.....+..+++.
T Consensus       114 ~V~~~~~~~~~~~~l~~  130 (198)
T PRK00377        114 RIFIGGGSEKLKEIISA  130 (198)
T ss_pred             EEEECCCcccHHHHHHH
Confidence            99998766666667763

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.09  E-value=3.3e-10  Score=83.29  Aligned_cols=115  Identities=16%  Similarity=0.232  Sum_probs=82.3

Q ss_pred             CCCCEEEEEcCccc--HHHHHHHhhC-CCCCEEEEEe---------------CCCCCcEEEEecch-HHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTG--YSLFLTALTI-PEDGQITAID---------------ARVDHKINFIESEA-LSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G--~~t~~la~~~-~~~~~v~~iD---------------~~~~~~i~~~~gd~-~~~l~~~~~~~~~   63 (125)
                      .+++.|+|+++.-|  .+|+.||-+. ..+|++++|-               .++.+.++|+.|+. .+.++.+      
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~------  113 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL------  113 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc------
Confidence            46789999977644  3566666554 3579999998               45667789999985 5577765      


Q ss_pred             CCceeEEEEcCCCcCCH-HHHhhhC---------CCCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           64 EVNFDYAFMDADKDNYC-NYMREQV---------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        64 ~~~fD~v~id~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                       ...||+++|+..++|. .+|+...         -.+... ....--++...++..+.+++++||||.|++|
T Consensus       114 -~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~-r~~~~~~w~~~~~~~r~Vrsv~LPIG~GleV  183 (218)
T PF07279_consen  114 -KGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFS-RSTNGFSWRSVLRGRRVVRSVFLPIGKGLEV  183 (218)
T ss_pred             -cCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEecccc-CCcCCccHHHhcCCCCceeEEEeccCCCeEE
Confidence             5699999999999998 8888321         111111 1111236777787888899999999999975

The function of this family is unknown.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.08  E-value=1e-10  Score=76.63  Aligned_cols=64  Identities=28%  Similarity=0.623  Sum_probs=28.1

Q ss_pred             EEEcCcccHHHHHHHhhCCCCC--EEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            9 IEIGVFTGYSLFLTALTIPEDG--QITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         9 LeiG~g~G~~t~~la~~~~~~~--~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      |||||..|+||++|++++++.+  +++++|              .++.+++++++++..+.++.+.     ..+||++|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEE
Confidence            7999999999999999998654  899999              1345689999999999988873     378999999


Q ss_pred             cCCCc
Q 042171           73 DADKD   77 (125)
Q Consensus        73 d~~~~   77 (125)
                      |+.+.
T Consensus        76 Dg~H~   80 (106)
T PF13578_consen   76 DGDHS   80 (106)
T ss_dssp             ES---
T ss_pred             CCCCC
Confidence            99874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.06  E-value=7.5e-10  Score=76.82  Aligned_cols=67  Identities=28%  Similarity=0.365  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+..+|||+|||+|..+..+++.+.++++++++|               .++. +++++++|..+ ++...     .++|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence            4678999999999999999997665589999999               4564 89999999998 55310     2689


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|++....
T Consensus        75 D~I~~~~~l   83 (152)
T PF13847_consen   75 DIIISNGVL   83 (152)
T ss_dssp             EEEEEESTG
T ss_pred             eEEEEcCch
Confidence            999997654

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.03  E-value=1.2e-09  Score=79.20  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.+|||||||+|..++.+++..+ +++|+++|               .++. +++++++|+.+. +.       .++||+
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~-~~-------~~~fDl  115 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEF-GQ-------EEKFDV  115 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhC-CC-------CCCccE
Confidence            57999999999999999999776 79999999               3453 499999999874 21       368999


Q ss_pred             EEEcCCCcCCHHHHh
Q 042171           70 AFMDADKDNYCNYMR   84 (125)
Q Consensus        70 v~id~~~~~~~~~~~   84 (125)
                      |++++. .++..+++
T Consensus       116 V~~~~~-~~~~~~l~  129 (187)
T PRK00107        116 VTSRAV-ASLSDLVE  129 (187)
T ss_pred             EEEccc-cCHHHHHH
Confidence            999763 34445555

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.02  E-value=1.8e-09  Score=71.43  Aligned_cols=64  Identities=23%  Similarity=0.292  Sum_probs=50.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..+..+++..+ .++++++|               .++ .+++++.+|+.+.++..      ..+||.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~D~   91 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDS------LPEPDR   91 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhh------cCCCCE
Confidence            46899999999999999999987 59999999               223 47899999887544432      368999


Q ss_pred             EEEcCCC
Q 042171           70 AFMDADK   76 (125)
Q Consensus        70 v~id~~~   76 (125)
                      |+++...
T Consensus        92 v~~~~~~   98 (124)
T TIGR02469        92 VFIGGSG   98 (124)
T ss_pred             EEECCcc
Confidence            9986543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.01  E-value=5.2e-09  Score=69.00  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+|||+|||+|..++.+++..  ..+++++|               .++.++++++.+|..+..+.+     ..++||+|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I   74 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI   74 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence            589999999999999999986  58999999               566788999999998886444     25889999


Q ss_pred             EEcCCCcCCHHHHhhhC-CCCCCcchHHHHHHHHHHhhcCCCeEEEEee
Q 042171           71 FMDADKDNYCNYMREQV-PDHFRGSSKQAILDLNRSLVDDPCVQLSHVA  118 (125)
Q Consensus        71 ~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp  118 (125)
                      +.      +++|..... ..........-+++..+.|+.. +.-+.++|
T Consensus        75 v~------npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~~~  116 (117)
T PF13659_consen   75 VT------NPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFITP  116 (117)
T ss_dssp             EE--------STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EE------CCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEEeC
Confidence            96      666654221 1111122344455555545433 44444443

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.00  E-value=6.9e-10  Score=82.85  Aligned_cols=70  Identities=16%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||||.++..+++.++++++|+++|               .+. .+|+++++|+++. | +     ++++||
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~l-p-~-----~d~sfD  118 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDL-P-F-----PDNSFD  118 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------TT-EE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHh-c-C-----CCCcee
Confidence            457999999999999999999988789999999               234 4899999999876 5 3     268999


Q ss_pred             EEEEcCCCcCCHH
Q 042171           69 YAFMDADKDNYCN   81 (125)
Q Consensus        69 ~v~id~~~~~~~~   81 (125)
                      .|++....++.++
T Consensus       119 ~v~~~fglrn~~d  131 (233)
T PF01209_consen  119 AVTCSFGLRNFPD  131 (233)
T ss_dssp             EEEEES-GGG-SS
T ss_pred             EEEHHhhHHhhCC
Confidence            9999877666543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.99  E-value=4e-10  Score=83.21  Aligned_cols=92  Identities=24%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      .+.+|.|+|||+|.+|-.|+++.| +++|+++|         +....+++|.++|..++-|        +.++|++|.++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p--------~~~~dllfaNA  100 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP--------EQPTDLLFANA  100 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC--------CCccchhhhhh
Confidence            578999999999999999999999 89999999         2233689999999998844        57899999987


Q ss_pred             CCcC---CHHHHh-------------hhCCCCCCcchHHHHHHHHH
Q 042171           75 DKDN---YCNYMR-------------EQVPDHFRGSSKQAILDLNR  104 (125)
Q Consensus        75 ~~~~---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  104 (125)
                      ....   .+..|.             ..+|++....++..|++..+
T Consensus       101 vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~  146 (257)
T COG4106         101 VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETAD  146 (257)
T ss_pred             hhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHh
Confidence            6443   233333             12466655557788887664

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.95  E-value=4.2e-09  Score=75.50  Aligned_cols=70  Identities=29%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+ +++|+++|               .++ .+++++.+|+...   +      ..+||
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~---~------~~~~D   99 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE---L------PGKAD   99 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh---c------CcCCC
Confidence            457999999999999999999876 68999999               233 4699999987432   2      35799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++++....+..+++
T Consensus       100 ~v~~~~~~~~~~~~l~  115 (187)
T PRK08287        100 AIFIGGSGGNLTAIID  115 (187)
T ss_pred             EEEECCCccCHHHHHH
Confidence            9999877655666655

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.94  E-value=1.5e-08  Score=73.26  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..+..+|+..| +++++++|               .++ .+++++.+|+.+.++.+.    +.+++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~----~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFF----PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhC----CCCcee
Confidence            456899999999999999999987 78999999               345 489999999998755432    145899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|+++.
T Consensus        90 ~v~~~~   95 (194)
T TIGR00091        90 KVFLNF   95 (194)
T ss_pred             EEEEEC
Confidence            999974

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.91  E-value=4.4e-09  Score=74.66  Aligned_cols=60  Identities=22%  Similarity=0.407  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++++++..+ ..+|+++|               .++.. ++++.+|..+.++        ..+||
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------cccee
Confidence            467999999999999999999887 67899999               45544 9999999876533        47899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       101 ~Iv~N  105 (170)
T PF05175_consen  101 LIVSN  105 (170)
T ss_dssp             EEEE-
T ss_pred             EEEEc
Confidence            99985

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.91  E-value=5.7e-09  Score=81.35  Aligned_cols=71  Identities=18%  Similarity=0.307  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+..++|+++|               .++ ++++++++|+.+.++.       ..+||
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------FAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------cCCcc
Confidence            346999999999999999999887568999999               234 5799999998776443       36799


Q ss_pred             EEEEcCCCcCCHHH
Q 042171           69 YAFMDADKDNYCNY   82 (125)
Q Consensus        69 ~v~id~~~~~~~~~   82 (125)
                      +|++++...+.+..
T Consensus       152 ~Ii~~~g~~~ip~~  165 (322)
T PRK13943        152 VIFVTVGVDEVPET  165 (322)
T ss_pred             EEEECCchHHhHHH
Confidence            99998876665543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.91  E-value=4.6e-09  Score=77.21  Aligned_cols=68  Identities=16%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..+..+++.++++++|+++|               .++ ++++++.+|+.+. + +     +.++||
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD  116 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----DDNSFD  116 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----CCCCcc
Confidence            356999999999999999999987678999999               233 5799999999764 3 2     147899


Q ss_pred             EEEEcCCCcCC
Q 042171           69 YAFMDADKDNY   79 (125)
Q Consensus        69 ~v~id~~~~~~   79 (125)
                      +|++....++.
T Consensus       117 ~V~~~~~l~~~  127 (231)
T TIGR02752       117 YVTIGFGLRNV  127 (231)
T ss_pred             EEEEecccccC
Confidence            99987654443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.6e-08  Score=76.12  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||.|+|+|..|.+||+++.+.|+|+++|               +++.++|++..+|..+...        .+.||
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~vD  165 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EEDVD  165 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------ccccC
Confidence            456999999999999999999998889999999               6888889999999988743        35899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      .||+|...
T Consensus       166 av~LDmp~  173 (256)
T COG2519         166 AVFLDLPD  173 (256)
T ss_pred             EEEEcCCC
Confidence            99998765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.89  E-value=6.2e-09  Score=79.67  Aligned_cols=61  Identities=16%  Similarity=0.419  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++.+++..+ +.+|+++|               .++.++++++.+|+.+.++        ..+||
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~~fD  191 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GRKYD  191 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CCCcc
Confidence            357899999999999999999887 78999999               3566789999999875432        35799


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       192 ~Iv~N  196 (284)
T TIGR03533       192 LIVSN  196 (284)
T ss_pred             EEEEC
Confidence            99985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.87  E-value=1.1e-08  Score=76.76  Aligned_cols=63  Identities=21%  Similarity=0.261  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..+.++++.   +.+|+++|               .++.++++++++|+.+..+..      .++||
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD  114 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVD  114 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCC
Confidence            4679999999999999999985   57999999               345578999999998864332      47899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       115 ~V~~~~v  121 (255)
T PRK11036        115 LILFHAV  121 (255)
T ss_pred             EEEehhH
Confidence            9998644

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.86  E-value=1.8e-08  Score=73.42  Aligned_cols=65  Identities=20%  Similarity=0.301  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..+..+++..| +.+++++|               .++ ++++++.+|+.+.++...    +.++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----Cccccc
Confidence            467899999999999999999876 68999999               234 679999999954445321    246899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|++..
T Consensus       114 ~V~~~~  119 (202)
T PRK00121        114 RIYLNF  119 (202)
T ss_pred             eEEEEC
Confidence            999853

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.85  E-value=1.1e-08  Score=77.01  Aligned_cols=69  Identities=17%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHH-HHHHHhhcCCCCCcee
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS-VLDQLLKDSENEVNFD   68 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~-~l~~~~~~~~~~~~fD   68 (125)
                      ..+|||.|||+|..|.+|++++.+.|+|++.|               .++.++|++.++|..+ .++.-     .+..+|
T Consensus        41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-----~~~~~D  115 (247)
T PF08704_consen   41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-----LESDFD  115 (247)
T ss_dssp             T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT------TTSEE
T ss_pred             CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-----ccCccc
Confidence            46999999999999999999998899999999               7888899999999964 32210     136799


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      .||+|-..++
T Consensus       116 avfLDlp~Pw  125 (247)
T PF08704_consen  116 AVFLDLPDPW  125 (247)
T ss_dssp             EEEEESSSGG
T ss_pred             EEEEeCCCHH
Confidence            9999987643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.85  E-value=9.8e-09  Score=74.93  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+++..+++..   ++++++|               .++ .+++++.+|+.+.++.       .++||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWPA-------YAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCCc-------CCCcC
Confidence            45699999999999999988874   5899999               234 3599999998665432       37899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++++....++..+.
T Consensus       147 ~I~~~~~~~~~~~~l~  162 (212)
T PRK00312        147 RILVTAAAPEIPRALL  162 (212)
T ss_pred             EEEEccCchhhhHHHH
Confidence            9999988766665444

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=4.3e-09  Score=80.57  Aligned_cols=63  Identities=19%  Similarity=0.338  Sum_probs=51.5

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +|||+|||||+.++.+++..+ ..+|+++|               .++ .++.++.+|+.+-   +      .++||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~---~------~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP---L------RGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc---c------CCceeEEE
Confidence            799999999999999999998 69999999               455 6777777766544   3      35899999


Q ss_pred             EcCCCcCCHHHHhhh
Q 042171           72 MDADKDNYCNYMREQ   86 (125)
Q Consensus        72 id~~~~~~~~~~~~~   86 (125)
                      +      +|+|++..
T Consensus       182 s------NPPYip~~  190 (280)
T COG2890         182 S------NPPYIPAE  190 (280)
T ss_pred             e------CCCCCCCc
Confidence            6      78887743

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.84  E-value=6.6e-09  Score=85.29  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=50.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.+|||+|||+|+.++.+++..+ +.+|+++|               .++.++++++++|+.+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999999887 78999999               4566789999999875432        357999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |+++
T Consensus       210 IvsN  213 (506)
T PRK01544        210 IVSN  213 (506)
T ss_pred             EEEC
Confidence            9973

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.83  E-value=2.9e-08  Score=75.02  Aligned_cols=68  Identities=22%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C----C-----CCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A----R-----VDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~----~-----~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +..+|||+|||+|..+..+++..++.++|+++|        +    .     ..++++++++|+.+. | +     ++++
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~s  145 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----DDCY  145 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----CCCC
Confidence            356899999999999999999876578999999        1    1     124799999998764 4 2     2578


Q ss_pred             eeEEEEcCCCcC
Q 042171           67 FDYAFMDADKDN   78 (125)
Q Consensus        67 fD~v~id~~~~~   78 (125)
                      ||+|++....++
T Consensus       146 fD~V~~~~~l~~  157 (261)
T PLN02233        146 FDAITMGYGLRN  157 (261)
T ss_pred             EeEEEEeccccc
Confidence            999998655443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.83  E-value=1.9e-08  Score=73.90  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C---CCCCcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A---RVDHKINFIESEALSV--LDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~---~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|.++..+++..++.++|++|| .   +. .+++++++|+.+.  ++.+.... ..++||+|++|...
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~-~~v~~i~~D~~~~~~~~~i~~~~-~~~~~D~V~S~~~~  127 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI-VGVDFLQGDFRDELVLKALLERV-GDSKVQVVMSDMAP  127 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC-CCcEEEecCCCChHHHHHHHHHh-CCCCCCEEecCCCC
Confidence            456899999999999999999987678999999 2   33 4689999998863  33221110 25789999998754

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=1.5e-08  Score=78.46  Aligned_cols=59  Identities=19%  Similarity=0.428  Sum_probs=50.2

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+|||+|||+|+.++.+++..| +.+|+++|               .++.++++++++|+.+.++        ..+||+|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlI  205 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLI  205 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEE
Confidence            6899999999999999999887 78999999               3566789999999876543        3579999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      +++
T Consensus       206 vsN  208 (307)
T PRK11805        206 VSN  208 (307)
T ss_pred             EEC
Confidence            985

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.80  E-value=1.2e-08  Score=77.94  Aligned_cols=59  Identities=20%  Similarity=0.455  Sum_probs=49.3

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+|||+|||+|+.++.+++..+ +.+|+++|               .++.++++++++|+.+.++        ..+||+|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~~fDlI  186 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQKIDII  186 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CCCccEE
Confidence            6899999999999999999887 68999999               3555679999999876432        2479999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      +++
T Consensus       187 vsN  189 (284)
T TIGR00536       187 VSN  189 (284)
T ss_pred             EEC
Confidence            974

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00811 spermidine synthase; Provisional

Probab=98.79  E-value=3.7e-08  Score=75.38  Aligned_cols=67  Identities=18%  Similarity=0.257  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC--CCcEEEEecchHHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV--DHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~--~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      .++++||+||||.|..+.++++..+ ..+|+++|                 .+.  .+|++++.+|+.+.++..      
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------  147 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------  147 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------
Confidence            4688999999999999999987533 57899999                 122  468999999999987642      


Q ss_pred             CCceeEEEEcCCC
Q 042171           64 EVNFDYAFMDADK   76 (125)
Q Consensus        64 ~~~fD~v~id~~~   76 (125)
                      .++||+|++|...
T Consensus       148 ~~~yDvIi~D~~d  160 (283)
T PRK00811        148 ENSFDVIIVDSTD  160 (283)
T ss_pred             CCcccEEEECCCC
Confidence            4789999999754

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.77  E-value=1.8e-08  Score=75.35  Aligned_cols=65  Identities=23%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||||||+|..+..+++..+ +++|+++|         .....+++++.+|+.+..+        ..+||+|++..
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~--------~~~fD~v~~~~  101 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQP--------PQALDLIFANA  101 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCC--------CCCccEEEEcc
Confidence            457999999999999999999887 78999999         1122568899999875522        36899999986


Q ss_pred             CCc
Q 042171           75 DKD   77 (125)
Q Consensus        75 ~~~   77 (125)
                      ..+
T Consensus       102 ~l~  104 (258)
T PRK01683        102 SLQ  104 (258)
T ss_pred             Chh
Confidence            643

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.76  E-value=5.6e-08  Score=70.20  Aligned_cols=72  Identities=24%  Similarity=0.276  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++++++..+ +++|+++|               .++ ++++++.+|+.+.++.+      ...+|
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~------~~~~d  111 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQL------APAPD  111 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhC------CCCCC
Confidence            346899999999999999998766 68999999               234 57999999998765543      24578


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      .+++++.. ....+++
T Consensus       112 ~v~~~~~~-~~~~~l~  126 (196)
T PRK07402        112 RVCIEGGR-PIKEILQ  126 (196)
T ss_pred             EEEEECCc-CHHHHHH
Confidence            89988643 3345555

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.76  E-value=1.1e-08  Score=76.74  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      ++.+|||||||+|..+..+++..| +++|+++|       ..-..+++++.+|+.+..+        .++||+|++....
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~--------~~~fD~v~~~~~l   99 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDVRDWKP--------KPDTDVVVSNAAL   99 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCC--------CCCceEEEEehhh
Confidence            467999999999999999999886 78999999       1112468899999875521        4689999997654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.76  E-value=1.6e-08  Score=74.03  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ++.+|||||||+|+.+..+++..+ +.+++++|        + ....+++++++|+.+  |.      ..++||+|++.+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~------~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PF------KDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CC------CCCCEEEEEECC
Confidence            567899999999999999999876 68999999        1 112457888998876  32      257899999877


Q ss_pred             CC
Q 042171           75 DK   76 (125)
Q Consensus        75 ~~   76 (125)
                      ..
T Consensus       114 vL  115 (204)
T TIGR03587       114 VL  115 (204)
T ss_pred             hh
Confidence            64

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02244 tocopherol O-methyltransferase

Probab=98.75  E-value=2e-08  Score=78.59  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++..  +++|+++|               .++.++++++.+|+.+. | +     .+++||
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~-----~~~~FD  188 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F-----EDGQFD  188 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C-----CCCCcc
Confidence            46799999999999999999976  57999999               35667899999999764 3 2     257899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       189 ~V~s~~~~  196 (340)
T PLN02244        189 LVWSMESG  196 (340)
T ss_pred             EEEECCch
Confidence            99985543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.72  E-value=4.2e-08  Score=79.20  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..|+.+++.++++++|+++|               .++ .+++++++|+.+..+.+      .++||
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~------~~~fD  322 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHEKF------AEKFD  322 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccchh------cccCC
Confidence            346899999999999999999886579999999               355 35999999998764333      36799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|+.
T Consensus       323 ~Vl~D~P  329 (444)
T PRK14902        323 KILVDAP  329 (444)
T ss_pred             EEEEcCC
Confidence            9999974

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.71  E-value=8.7e-08  Score=76.61  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++|||+|||+|.+++.++.. + ..+|+++|               .++. ++++++++|+.+.++.+...   ..+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~~f  294 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GEKF  294 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CCCC
Confidence            4679999999999999876643 2 46999999               4564 48999999999988765321   3589


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       295 DlVilDPP  302 (396)
T PRK15128        295 DVIVMDPP  302 (396)
T ss_pred             CEEEECCC
Confidence            99999854

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.71  E-value=1.6e-07  Score=73.34  Aligned_cols=60  Identities=22%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||||||+|..+..+++.   +++|++||               .+...+++++.+++.+. +..      .++||+
T Consensus       132 g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~~FD~  201 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GRKFDA  201 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cCCCCE
Confidence            458999999999999999863   68999999               12335899999999765 321      478999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++-.
T Consensus       202 Vi~~~  206 (322)
T PLN02396        202 VLSLE  206 (322)
T ss_pred             EEEhh
Confidence            99743

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.70  E-value=8.4e-08  Score=77.40  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..|+.+++.++++++|+++|               .++ .+++++.+|+.+.....      .++||
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~------~~~fD  309 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYV------QDTFD  309 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhh------hccCC
Confidence            346899999999999999999987679999999               455 46899999998652222      36799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       310 ~Vl~DaP  316 (431)
T PRK14903        310 RILVDAP  316 (431)
T ss_pred             EEEECCC
Confidence            9999864

>PTZ00146 fibrillarin; Provisional

Probab=98.69  E-value=7.7e-08  Score=74.07  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||+|||+|+++..+++.+++.++|+++|            +....+|.++.+|+..... +..   ..++||+||+
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~-y~~---~~~~vDvV~~  208 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK-YRM---LVPMVDVIFA  208 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh-hhc---ccCCCCEEEE
Confidence            35899999999999999999998789999999            1222578999999864211 100   1357999999


Q ss_pred             cCCCcCC
Q 042171           73 DADKDNY   79 (125)
Q Consensus        73 d~~~~~~   79 (125)
                      |....+.
T Consensus       209 Dva~pdq  215 (293)
T PTZ00146        209 DVAQPDQ  215 (293)
T ss_pred             eCCCcch
Confidence            9975443

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.68  E-value=9.5e-08  Score=61.85  Aligned_cols=58  Identities=17%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             EEEEcCcccHHHHHHHhhCCC--CCEEEEEe------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            8 TIEIGVFTGYSLFLTALTIPE--DGQITAID------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         8 vLeiG~g~G~~t~~la~~~~~--~~~v~~iD------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      |||+|||+|..+..+++.++.  ..+++++|            . ....+++++++|+.++ +..      .++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~------~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFS------DGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHH------SSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-ccc------CCCeeEEEE
Confidence            799999999999999998832  37999999            1 1123899999999875 443      579999998

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.67  E-value=6.2e-08  Score=78.31  Aligned_cols=61  Identities=28%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..|+.+++.++..++|+++|               .++ ++|+++.+|+.+..+        ..+||.
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~--------~~~fD~  321 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSP--------EEQPDA  321 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCccccccc--------CCCCCE
Confidence            46899999999999999999887678999999               455 479999999976532        468999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++|+
T Consensus       322 Vl~D~  326 (445)
T PRK14904        322 ILLDA  326 (445)
T ss_pred             EEEcC
Confidence            99985

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.67  E-value=1.2e-07  Score=75.49  Aligned_cols=59  Identities=15%  Similarity=0.249  Sum_probs=47.7

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC--CCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV--DHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+|||+|||+|..++.+++..| +.+|+++|               .+.  ..+++++.+|+.+.++        ..+||
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~fD  300 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFN  300 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCEE
Confidence            5899999999999999999987 79999999               122  1378999998865422        35799


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       301 lIlsN  305 (378)
T PRK15001        301 AVLCN  305 (378)
T ss_pred             EEEEC
Confidence            99985

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.67  E-value=1.5e-07  Score=68.90  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.++...  ..+|+++|               .++ ++++++.+|+.+.++..      ..+||
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~------~~~fD  123 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP------GTPHN  123 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc------CCCce
Confidence            35699999999999999754433  36899999               344 47999999998876532      35799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +||+|-.
T Consensus       124 lV~~DPP  130 (199)
T PRK10909        124 VVFVDPP  130 (199)
T ss_pred             EEEECCC
Confidence            9999866

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.66  E-value=1.2e-07  Score=73.46  Aligned_cols=63  Identities=11%  Similarity=0.063  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++.+|+.   ..+|+++|               .++ ++++++.+|+.+..+..      .++||
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D  242 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVPD  242 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCCe
Confidence            4679999999999999999984   57899999               355 68999999998875432      35799


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++|-..
T Consensus       243 ~Vv~dPPr  250 (315)
T PRK03522        243 LVLVNPPR  250 (315)
T ss_pred             EEEECCCC
Confidence            99998543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.65  E-value=1e-07  Score=70.53  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++.+++..+ +.+++++|               .++ ++++++.+|+.+.++        .++||
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLP--------GGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCc--------CCcee
Confidence            345899999999999999999887 68999999               344 479999999876432        47899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       157 ~Vi~n  161 (251)
T TIGR03534       157 LIVSN  161 (251)
T ss_pred             EEEEC
Confidence            99985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02366 spermidine synthase

Probab=98.65  E-value=2.2e-07  Score=72.13  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++++||+||||.|..+.++++. ++..+|+.+|            .     ++ .+|++++.+|+.+.+...     +.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~  163 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PE  163 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cC
Confidence            46899999999999999999886 4357899999            1     12 358999999999887643     13


Q ss_pred             CceeEEEEcCCCc
Q 042171           65 VNFDYAFMDADKD   77 (125)
Q Consensus        65 ~~fD~v~id~~~~   77 (125)
                      ++||+|++|+..+
T Consensus       164 ~~yDvIi~D~~dp  176 (308)
T PLN02366        164 GTYDAIIVDSSDP  176 (308)
T ss_pred             CCCCEEEEcCCCC
Confidence            6799999998764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.64  E-value=1.5e-07  Score=75.01  Aligned_cols=63  Identities=24%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ...+||||||+|..++.+|+..| +..++++|               .++ .++.++.+|+.+.+..+     +++++|.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~-----~~~s~D~  195 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELL-----PSNSVEK  195 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhC-----CCCceeE
Confidence            35899999999999999999997 79999999               345 57999999998765544     2578999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++..
T Consensus       196 I~lnF  200 (390)
T PRK14121        196 IFVHF  200 (390)
T ss_pred             EEEeC
Confidence            99843

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.64  E-value=1.6e-07  Score=71.10  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..|+.+++.+++.++|+++|               .++ .+|+++.+|+... +..      ..+||.
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~-~~~------~~~fD~  143 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVF-GAA------VPKFDA  143 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHh-hhh------ccCCCE
Confidence            46899999999999999999987678999999               445 4699999998765 222      356999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|+.
T Consensus       144 Vl~D~P  149 (264)
T TIGR00446       144 ILLDAP  149 (264)
T ss_pred             EEEcCC
Confidence            999964

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.64  E-value=1.3e-07  Score=80.43  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++|||+|||+|..+++++++ + ..+|+++|               .++. ++++++++|+.+.++.+      ..+|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~f  609 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQF  609 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCc
Confidence            4689999999999999999985 2 34799999               4564 58999999999887654      3689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|-.
T Consensus       610 DlIilDPP  617 (702)
T PRK11783        610 DLIFIDPP  617 (702)
T ss_pred             CEEEECCC
Confidence            99999843

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.63  E-value=7.2e-08  Score=70.34  Aligned_cols=65  Identities=22%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|.++..+++..+ ..+++++|          ....++++++.+|..+. + +     ..++||+|++.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~vi~~  105 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-P-L-----EDSSFDLIVSN  105 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-C-C-----CCCceeEEEEh
Confidence            457999999999999999999886 68899999          22335789999998765 2 1     15789999987


Q ss_pred             CCC
Q 042171           74 ADK   76 (125)
Q Consensus        74 ~~~   76 (125)
                      ...
T Consensus       106 ~~l  108 (240)
T TIGR02072       106 LAL  108 (240)
T ss_pred             hhh
Confidence            543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01581 speE spermidine synthase; Validated

Probab=98.62  E-value=2.6e-07  Score=73.18  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------C-----------CC-CCcEEEEecchHHHHHHHhhcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------A-----------RV-DHKINFIESEALSVLDQLLKDS   61 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~-----------~~-~~~i~~~~gd~~~~l~~~~~~~   61 (125)
                      .+|++||+||||+|+.+..+++. ++..+|+++|         .           .+ .+|++++.+|+.+.++..    
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~----  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP----  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence            57899999999999988888875 3368999999         1           11 469999999999987653    


Q ss_pred             CCCCceeEEEEcCCC
Q 042171           62 ENEVNFDYAFMDADK   76 (125)
Q Consensus        62 ~~~~~fD~v~id~~~   76 (125)
                        .++||+|++|...
T Consensus       224 --~~~YDVIIvDl~D  236 (374)
T PRK01581        224 --SSLYDVIIIDFPD  236 (374)
T ss_pred             --CCCccEEEEcCCC
Confidence              4689999999653

>PRK04266 fibrillarin; Provisional

Probab=98.61  E-value=1.3e-07  Score=70.35  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHH--HHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVL--DQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l--~~~~~~~~~~~~fD~   69 (125)
                      +..+|||+|||+|+.++.+++.++ .++|+++|            +.-..+|.++.+|+.+..  ..+      .++||+
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l------~~~~D~  144 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV------VEKVDV  144 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc------cccCCE
Confidence            345999999999999999999997 78999999            111257899999986421  112      356999


Q ss_pred             EEEcCCC
Q 042171           70 AFMDADK   76 (125)
Q Consensus        70 v~id~~~   76 (125)
                      ||+|...
T Consensus       145 i~~d~~~  151 (226)
T PRK04266        145 IYQDVAQ  151 (226)
T ss_pred             EEECCCC
Confidence            9998654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.61  E-value=1.7e-07  Score=71.84  Aligned_cols=69  Identities=14%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||.|..++++|+..  +.+|++++               .|+..+|+++..|..+.          .++||
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e~fD  139 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EEPFD  139 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------ccccc
Confidence            45699999999999999999998  69999999               67878999999988765          35699


Q ss_pred             EEEEcC-----CCcCCHHHHh
Q 042171           69 YAFMDA-----DKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~-----~~~~~~~~~~   84 (125)
                      -|++=+     .+++|+.||+
T Consensus       140 rIvSvgmfEhvg~~~~~~ff~  160 (283)
T COG2230         140 RIVSVGMFEHVGKENYDDFFK  160 (283)
T ss_pred             eeeehhhHHHhCcccHHHHHH
Confidence            999743     3567888988

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.60  E-value=5.4e-08  Score=74.22  Aligned_cols=69  Identities=26%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEE----ecchHHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFI----ESEALSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~----~gd~~~~l~~~~~~~~~   63 (125)
                      .++..+||+|||+|+.++.|++.+| +++++|||               .++..++.++    ++|+.+..+.+      
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~------  219 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLL------  219 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccc------
Confidence            3556899999999999999999999 89999999               5567788887    45554443322      


Q ss_pred             CCceeEEEEcCCCcCCHHHHh
Q 042171           64 EVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        64 ~~~fD~v~id~~~~~~~~~~~   84 (125)
                      .+++|++++      +|+|+.
T Consensus       220 ~~~~dllvs------NPPYI~  234 (328)
T KOG2904|consen  220 EGKIDLLVS------NPPYIR  234 (328)
T ss_pred             cCceeEEec------CCCccc
Confidence            588999995      777766

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.60  E-value=1e-07  Score=69.79  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++|||||||+|..+..+++..+ +.+++++|               .++.++++++.+|..+. + +      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999999886 68999999               45677899999998644 2 1      3579999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      ++.
T Consensus        72 ~~~   74 (224)
T smart00828       72 FGF   74 (224)
T ss_pred             ehH
Confidence            964

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.60  E-value=1.6e-07  Score=71.65  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||.|..++++|+..  +.+|++|.               .|+.+++++...|..+.          ..+||
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD  129 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PGKFD  129 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------S-S
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CCCCC
Confidence            34699999999999999999987  58999999               78888999999998754          35899


Q ss_pred             EEEEcC-----CCcCCHHHHh
Q 042171           69 YAFMDA-----DKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~-----~~~~~~~~~~   84 (125)
                      .|++=.     .+++|+.||+
T Consensus       130 ~IvSi~~~Ehvg~~~~~~~f~  150 (273)
T PF02353_consen  130 RIVSIEMFEHVGRKNYPAFFR  150 (273)
T ss_dssp             EEEEESEGGGTCGGGHHHHHH
T ss_pred             EEEEEechhhcChhHHHHHHH
Confidence            988632     2346677887

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.59  E-value=7.4e-07  Score=67.25  Aligned_cols=64  Identities=17%  Similarity=0.317  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..++.+++.+++.++|+++|               .++ ++++++.+|..+. + +     .+++||
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~-----~~~~fD  148 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-V-----ADNSVD  148 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-C-----CCCcee
Confidence            456999999999999999898877678999999               234 5899999998654 3 2     146899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       149 ~Vi~~~v  155 (272)
T PRK11873        149 VIISNCV  155 (272)
T ss_pred             EEEEcCc
Confidence            9998754

>PRK06922 hypothetical protein; Provisional

Probab=98.57  E-value=4.3e-07  Score=76.36  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHH-HhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQ-LLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~-~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..| +++++++|             .....++.++.+|+.+. |. +     +.++||+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f-----edeSFDv  490 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF-----EKESVDT  490 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc-----CCCCEEE
Confidence            457999999999999999999887 79999999             11224688899999864 42 3     2578999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++..
T Consensus       491 VVsn~  495 (677)
T PRK06922        491 IVYSS  495 (677)
T ss_pred             EEEch
Confidence            99754

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.56  E-value=1.1e-07  Score=76.36  Aligned_cols=62  Identities=19%  Similarity=0.274  Sum_probs=48.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ..+|||+|||+|..++.+++..+ +.+++++|             .....+++++++|..+..  +.    ...+||+|+
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~----~~~~FDLIV  324 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MP----SEGKWDIIV  324 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--cc----cCCCccEEE
Confidence            45899999999999999998876 78999999             123347999999986531  10    135799999


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      ++
T Consensus       325 SN  326 (423)
T PRK14966        325 SN  326 (423)
T ss_pred             EC
Confidence            84

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.56  E-value=2e-07  Score=67.60  Aligned_cols=60  Identities=17%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..+++||+.   +.+|+++|               .++ .+++++.+|..+. + +      .++||
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~------~~~fD   97 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNL-T-F------DGEYD   97 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhC-C-c------CCCcC
Confidence            4579999999999999999985   57999999               233 4588888887654 2 2      35799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus        98 ~I~~~~~  104 (197)
T PRK11207         98 FILSTVV  104 (197)
T ss_pred             EEEEecc
Confidence            9997544

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=2.3e-07  Score=74.82  Aligned_cols=67  Identities=18%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..|+.+++.+++.++|+++|               .|+ .+|+++.+|+.+.......   ..++||.
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~---~~~~fD~  328 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQ---WRGYFDR  328 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhccccccc---ccccCCE
Confidence            46899999999999999999987678999999               455 4699999999865321100   1367999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|+.
T Consensus       329 Vl~DaP  334 (434)
T PRK14901        329 ILLDAP  334 (434)
T ss_pred             EEEeCC
Confidence            999964

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.55  E-value=3.1e-07  Score=68.74  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ...+|||||||+|..++.+++.+ .++++++++|               .+...+++++++|+.+. +        ...+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~  126 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IENA  126 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CCCC
Confidence            45689999999999999999864 2478999999               24556899999998765 2        2458


Q ss_pred             eEEEEcC
Q 042171           68 DYAFMDA   74 (125)
Q Consensus        68 D~v~id~   74 (125)
                      |+|++..
T Consensus       127 D~vv~~~  133 (247)
T PRK15451        127 SMVVLNF  133 (247)
T ss_pred             CEEehhh
Confidence            9988753

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.55  E-value=2.8e-07  Score=71.89  Aligned_cols=70  Identities=11%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEe-cchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIE-SEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~-gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ..++||||||+|.....++...+ +.+++++|               . ++.++|+++. .+..+.+..+..   ..+.|
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~f  190 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNERF  190 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCce
Confidence            46899999999999999988776 68999999               4 5778898864 455444332211   14689


Q ss_pred             eEEEEcCCCcCCHHHHh
Q 042171           68 DYAFMDADKDNYCNYMR   84 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~   84 (125)
                      |+|++      +|+|+.
T Consensus       191 Dlivc------NPPf~~  201 (321)
T PRK11727        191 DATLC------NPPFHA  201 (321)
T ss_pred             EEEEe------CCCCcC
Confidence            99997      777776

>PLN02672 methionine S-methyltransferase

Probab=98.55  E-value=1.8e-07  Score=82.36  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC---------------CCcEEEEecchHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV---------------DHKINFIESEALSVL   54 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~---------------~~~i~~~~gd~~~~l   54 (125)
                      ..+|||+|||+|+.++.+++..+ .++|+++|               .++               .++++++++|+.+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            46899999999999999999987 68999999               111               257999999998765


Q ss_pred             HHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171           55 DQLLKDSENEVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        55 ~~~~~~~~~~~~fD~v~id~~~~~~~~~~~   84 (125)
                      +..      ..+||+|++      +|+|+.
T Consensus       198 ~~~------~~~fDlIVS------NPPYI~  215 (1082)
T PLN02672        198 RDN------NIELDRIVG------CIPQIL  215 (1082)
T ss_pred             ccc------CCceEEEEE------CCCcCC
Confidence            321      237999996      666665

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.55  E-value=9.7e-07  Score=68.77  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.++|||||||+|+.+..|++.-  ..+|+++|               .+...+++++.+++.+. |.       .++||
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~FD  191 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAFD  191 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCcC
Confidence            46799999999999999999873  35799999               12235799999988755 32       36799


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++-+
T Consensus       192 ~V~s~~  197 (322)
T PRK15068        192 TVFSMG  197 (322)
T ss_pred             EEEECC
Confidence            999743

>PHA03412 putative methyltransferase; Provisional

Probab=98.55  E-value=3.7e-07  Score=68.50  Aligned_cols=68  Identities=15%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCC--CCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIP--EDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~--~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ..+|||+|||+|..++.+++.++  +..+|+++|         .....++.++.+|..+. + +      ..+||+|++ 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~-~-~------~~~FDlIIs-  120 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTT-E-F------DTLFDMAIS-  120 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcc-c-c------cCCccEEEE-
Confidence            56999999999999999998763  357999999         11224688999998754 1 2      368999996 


Q ss_pred             CCCcCCHHHHhhh
Q 042171           74 ADKDNYCNYMREQ   86 (125)
Q Consensus        74 ~~~~~~~~~~~~~   86 (125)
                           +|+|+...
T Consensus       121 -----NPPY~~~~  128 (241)
T PHA03412        121 -----NPPFGKIK  128 (241)
T ss_pred             -----CCCCCCcc
Confidence                 88888744

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.53  E-value=2.9e-07  Score=69.21  Aligned_cols=61  Identities=20%  Similarity=0.377  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ++.+|||+|||+|..++.+++..+ ..+++++|             . ....+++++.+|+.+.++        .++||+
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--------~~~fD~  178 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--------GGRFDL  178 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------CCceeE
Confidence            456899999999999999999987 78999999             1 344689999999854322        368999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |+++
T Consensus       179 Iv~n  182 (275)
T PRK09328        179 IVSN  182 (275)
T ss_pred             EEEC
Confidence            9974

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.52  E-value=5.2e-07  Score=63.73  Aligned_cols=61  Identities=16%  Similarity=0.062  Sum_probs=47.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||||||+|..+..+++.   .++++++|            ....++++++++|+.+....       ..+||.|+.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~-------~~~~d~vi~   83 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP-------KLQPYKVVG   83 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc-------ccCCCEEEE
Confidence            458999999999999999987   47899999            11135899999999876321       346999998


Q ss_pred             cCC
Q 042171           73 DAD   75 (125)
Q Consensus        73 d~~   75 (125)
                      +-.
T Consensus        84 n~P   86 (169)
T smart00650       84 NLP   86 (169)
T ss_pred             CCC
Confidence            644

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.50  E-value=2.8e-07  Score=57.72  Aligned_cols=58  Identities=22%  Similarity=0.314  Sum_probs=44.0

Q ss_pred             EEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            9 IEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         9 LeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ||+|||+|..+..+++. + ..+++++|           .....++.++.+|..+. | +     ++++||+|++-..
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~   69 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-P-F-----PDNSFDVVFSNSV   69 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-S-S------TT-EEEEEEESH
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-c-c-----ccccccccccccc
Confidence            89999999999999998 4 79999999           12235577999998876 4 2     2689999997433

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.49  E-value=5.2e-07  Score=66.02  Aligned_cols=59  Identities=19%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++.   ..+++++|               .+..++++++.+|.    +..      .++||
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~------~~~fD  129 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL----ESL------LGRFD  129 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhc------cCCcC
Confidence            4569999999999999999876   45699999               23435799999983    222      47899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       130 ~v~~~~~  136 (230)
T PRK07580        130 TVVCLDV  136 (230)
T ss_pred             EEEEcch
Confidence            9998544

>PRK06202 hypothetical protein; Provisional

Probab=98.49  E-value=2e-07  Score=68.92  Aligned_cols=69  Identities=17%  Similarity=0.072  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC---CCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP---EDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~---~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ++.+|||||||+|..+..|++..+   .+.+|+++|          ... ..++++..+++.+. +.      ..++||+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-~~------~~~~fD~  132 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-VA------EGERFDV  132 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-cc------cCCCccE
Confidence            567999999999999999987543   246999999          111 23466666665433 32      1478999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++....++.
T Consensus       133 V~~~~~lhh~  142 (232)
T PRK06202        133 VTSNHFLHHL  142 (232)
T ss_pred             EEECCeeecC
Confidence            9997654443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.49  E-value=6.1e-07  Score=65.70  Aligned_cols=57  Identities=25%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+.++++.   +.+|+++|               .+..+++++..+|+.+.          .++||
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~fD  121 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEFD  121 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCcC
Confidence            4679999999999999999875   56899999               22335799999998654          26799


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|++-
T Consensus       122 ~ii~~  126 (219)
T TIGR02021       122 IVVCM  126 (219)
T ss_pred             EEEEh
Confidence            99863

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.49  E-value=1.3e-06  Score=70.26  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++++|+..   .+|+++|               .++ ++++++.+|+.+.++.+..   ...+||+
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~---~~~~~D~  365 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPW---AGQIPDV  365 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHh---cCCCCCE
Confidence            4689999999999999999863   5899999               344 5899999999987765421   1357999


Q ss_pred             EEEcCCCcC-CHHHHh
Q 042171           70 AFMDADKDN-YCNYMR   84 (125)
Q Consensus        70 v~id~~~~~-~~~~~~   84 (125)
                      |++|..... ....++
T Consensus       366 vi~dPPr~G~~~~~l~  381 (431)
T TIGR00479       366 LLLDPPRKGCAAEVLR  381 (431)
T ss_pred             EEECcCCCCCCHHHHH
Confidence            999976533 455554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.49  E-value=3.7e-07  Score=73.48  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||+|||+|..|+.+++..+ +++|+++|             ....-.++++.+|+.+..+.+     ..++||.|
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~-----~~~~fD~V  317 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW-----DGQPFDRI  317 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc-----ccCCCCEE
Confidence            456899999999999999999886 48999999             112224789999997643222     14679999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++|+.
T Consensus       318 l~D~P  322 (427)
T PRK10901        318 LLDAP  322 (427)
T ss_pred             EECCC
Confidence            99874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.49  E-value=4e-07  Score=65.97  Aligned_cols=59  Identities=17%  Similarity=0.249  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++++++.   +.+|+++|               .++  ++++...|.... + +      .++||
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~~fD   96 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-L------NEDYD   96 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-c------cCCCC
Confidence            5679999999999999999985   57999999               123  366777776432 2 2      35799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus        97 ~I~~~~~  103 (195)
T TIGR00477        97 FIFSTVV  103 (195)
T ss_pred             EEEEecc
Confidence            9997543

Part of a tellurite-reducing operon tehA and tehB

>PRK05785 hypothetical protein; Provisional

Probab=98.49  E-value=1.3e-07  Score=70.11  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C-----CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A-----RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~-----~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      .+.+|||||||||..+..+++..  +++|+++| +     -...+..++++|+.+. | +     ++++||+|++....
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~l-p-~-----~d~sfD~v~~~~~l  120 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDKVVGSFEAL-P-F-----RDKSFDVVMSSFAL  120 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccceEEechhhC-C-C-----CCCCEEEEEecChh
Confidence            36799999999999999999876  47999999 0     0112345678888764 4 2     26889999986544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.48  E-value=7.2e-07  Score=63.99  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC--CCCcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR--VDHKINFIESEALSV--LDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~--~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      +..+|||+|||+|..+..+++...+.++|+++| ..  -..+++++.+|+.+.  ++.+... .+.++||+|++|+.
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~~~~~  107 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVMSDAA  107 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHH-hCCCCccEEEcCCC
Confidence            457899999999999999998876578999999 22  124688888887542  1111100 01467999999864

>PRK08317 hypothetical protein; Provisional

Probab=98.48  E-value=4.4e-07  Score=66.00  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||+|||+|.++..+++.+++.++++++|             .....+++++.+|+.+. + +     ..++||+|
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v   91 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-P-F-----PDGSFDAV   91 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-C-C-----CCCCceEE
Confidence            456999999999999999999885578999999             12345799999988653 2 2     14789999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++...
T Consensus        92 ~~~~~   96 (241)
T PRK08317         92 RSDRV   96 (241)
T ss_pred             EEech
Confidence            98654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.48  E-value=4.4e-07  Score=66.31  Aligned_cols=65  Identities=15%  Similarity=0.286  Sum_probs=51.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..+..+++..++..+++++|               .++..+++++.+|+.+. + +     ..++||+
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~  124 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-P-F-----PDNSFDA  124 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-C-C-----CCCCccE
Confidence            46999999999999999999886568999999               12345789999998764 2 1     1468999


Q ss_pred             EEEcCCC
Q 042171           70 AFMDADK   76 (125)
Q Consensus        70 v~id~~~   76 (125)
                      |++....
T Consensus       125 I~~~~~l  131 (239)
T PRK00216        125 VTIAFGL  131 (239)
T ss_pred             EEEeccc
Confidence            9986543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.48  E-value=1.3e-06  Score=63.55  Aligned_cols=64  Identities=16%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ...+|||+|||.|....+|.+. + +.+.+++|       +-+..-+.++++|+.+.|+.+.     +++||.|++.-
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k-~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~-----d~sFD~VIlsq   83 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-K-QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFP-----DQSFDYVILSQ   83 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-c-CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCC-----CCCccEEehHh
Confidence            4579999999999999888875 2 78899999       2233457799999999988773     78999999743

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00417 speE spermidine synthase

Probab=98.48  E-value=1.1e-06  Score=66.69  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------CC-C-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------AR-V-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------~~-~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||+||||+|..+..+++..+ ..+++++|                .+ + ..+++++.+|+.+.+...      .
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~  143 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------E  143 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------C
Confidence            3578999999999999998887653 57899999                11 1 257999999999887653      4


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       144 ~~yDvIi~D~~~  155 (270)
T TIGR00417       144 NTFDVIIVDSTD  155 (270)
T ss_pred             CCccEEEEeCCC
Confidence            789999999763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00740 methyltransferase, putative

Probab=98.47  E-value=8e-07  Score=65.93  Aligned_cols=63  Identities=13%  Similarity=0.174  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||||||+|..+..+++.++ ++++++++|               .+...+++++++|+.+. +        ...+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~  123 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IKNA  123 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-C--------CCCC
Confidence            346899999999999999999763 479999999               23345799999999765 2        2458


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++...
T Consensus       124 d~v~~~~~  131 (239)
T TIGR00740       124 SMVILNFT  131 (239)
T ss_pred             CEEeeecc
Confidence            98887654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.47  E-value=3.9e-07  Score=73.26  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..|+.+++.++ +++|+++|               .++..++++..+|+.+... +.    ..++||
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-~~----~~~~fD  311 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-WA----ENEQFD  311 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-cc----cccccC
Confidence            346899999999999999999987 79999999               4554345557777654321 10    146799


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|++|+
T Consensus       312 ~VllDa  317 (426)
T TIGR00563       312 RILLDA  317 (426)
T ss_pred             EEEEcC
Confidence            999995

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.47  E-value=3.7e-07  Score=69.18  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCC--CEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPED--GQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~--~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|+.+..+++.++..  .+++++|         .....++++..+|+.+. | +     ++++||+|+.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p-~-----~~~sfD~I~~  157 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-P-F-----ADQSLDAIIR  157 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-C-C-----cCCceeEEEE
Confidence            44689999999999999999987642  3799999         11225688999998764 4 2     2578999997


Q ss_pred             cCCCcCCHHHHh
Q 042171           73 DADKDNYCNYMR   84 (125)
Q Consensus        73 d~~~~~~~~~~~   84 (125)
                      -.......++.+
T Consensus       158 ~~~~~~~~e~~r  169 (272)
T PRK11088        158 IYAPCKAEELAR  169 (272)
T ss_pred             ecCCCCHHHHHh
Confidence            655544444444

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.47  E-value=4.1e-07  Score=64.66  Aligned_cols=62  Identities=24%  Similarity=0.316  Sum_probs=45.2

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +.|+|+.||.|-.|+.+|+..   .+|++||               .|+.++|+++.||+.+.++.+..    ...||+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            368999999999999999984   5799999               78889999999999998766521    1228999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      |++-
T Consensus        74 FlSP   77 (163)
T PF09445_consen   74 FLSP   77 (163)
T ss_dssp             EE--
T ss_pred             EECC
Confidence            9863

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.46  E-value=1e-06  Score=64.13  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      .+||||||.|.+.+.+|+..| +..++++|               .++ .++.++.+|+...++.+..    .+++|-|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CCchheEE
Confidence            689999999999999999998 89999999               455 7999999999998887642    47899999


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      +.
T Consensus        94 i~   95 (195)
T PF02390_consen   94 IN   95 (195)
T ss_dssp             EE
T ss_pred             Ee
Confidence            84

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.45  E-value=7.1e-07  Score=67.23  Aligned_cols=63  Identities=13%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +.+|||+|||+|..++.+++..+ +.+|+++|          .... ..++++++|+.+.++...     .++||+|++|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~-----~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL-----RGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc-----CCCEeEEEEC
Confidence            35899999999999999999876 57999999          1110 125789999887654321     3579999975

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.43  E-value=1e-06  Score=71.20  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+|+..   .+|+++|               .++ ++++++.+|+.+.++.+.-   ...+||+
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~---~~~~fD~  370 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPW---ALGGFDK  370 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhh---hcCCCCE
Confidence            4689999999999999999873   6899999               344 4799999999876543210   1357999


Q ss_pred             EEEcCCCcCCHHHH
Q 042171           70 AFMDADKDNYCNYM   83 (125)
Q Consensus        70 v~id~~~~~~~~~~   83 (125)
                      |++|-.-......+
T Consensus       371 Vi~dPPr~g~~~~~  384 (443)
T PRK13168        371 VLLDPPRAGAAEVM  384 (443)
T ss_pred             EEECcCCcChHHHH
Confidence            99986543333333

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.42  E-value=4.8e-06  Score=62.53  Aligned_cols=63  Identities=16%  Similarity=0.320  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCC-EEEEEe--------C-------C-CCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDG-QITAID--------A-------R-VDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~-~v~~iD--------~-------~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +..+|||.|+|-||.++..+++   ++ +|+++|        +       + ...+|+++.||+.+..+.+     ++++
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~s  205 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDES  205 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cccc
Confidence            4579999999999999998876   56 899999        1       1 2236899999999999888     3688


Q ss_pred             eeEEEEcC
Q 042171           67 FDYAFMDA   74 (125)
Q Consensus        67 fD~v~id~   74 (125)
                      ||+|+-|-
T Consensus       206 fDaIiHDP  213 (287)
T COG2521         206 FDAIIHDP  213 (287)
T ss_pred             cceEeeCC
Confidence            99999764

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.42  E-value=1.9e-06  Score=62.41  Aligned_cols=68  Identities=10%  Similarity=-0.008  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..++||++||+|..++.++.+-  ..+|+++|               .++.++++++.+|+.+.++.+.+.   ...||
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~---~~~~d  123 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK---PTFDN  123 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc---CCCce
Confidence            45789999999999999998873  24899999               455568999999998877654221   23589


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +||+|-.-
T Consensus       124 vv~~DPPy  131 (189)
T TIGR00095       124 VIYLDPPF  131 (189)
T ss_pred             EEEECcCC
Confidence            99988653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.42  E-value=8.7e-07  Score=64.09  Aligned_cols=65  Identities=23%  Similarity=0.395  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ++.+|||+|||+|..+..+++..+..++++++|            .....+++++.+|+.+. + +     ..++||+|+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~i~  111 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-P-F-----EDNSFDAVT  111 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-C-C-----CCCcEEEEE
Confidence            467999999999999999999987448999999            11345789999999865 2 2     146899998


Q ss_pred             EcCC
Q 042171           72 MDAD   75 (125)
Q Consensus        72 id~~   75 (125)
                      +...
T Consensus       112 ~~~~  115 (223)
T TIGR01934       112 IAFG  115 (223)
T ss_pred             Eeee
Confidence            8654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.41  E-value=6e-07  Score=72.76  Aligned_cols=64  Identities=17%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..++.+++..  +.+|+++|             .+...+++++.+|+.+. + +     +.++||+|
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~I  336 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-T-Y-----PDNSFDVI  336 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-C-C-----CCCCEEEE
Confidence            35699999999999999999876  57999999             24456899999998764 2 2     14689999


Q ss_pred             EEcCCC
Q 042171           71 FMDADK   76 (125)
Q Consensus        71 ~id~~~   76 (125)
                      ++....
T Consensus       337 ~s~~~l  342 (475)
T PLN02336        337 YSRDTI  342 (475)
T ss_pred             EECCcc
Confidence            986543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.41  E-value=1e-06  Score=67.77  Aligned_cols=62  Identities=16%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++.| +.+++++|              .++.+||+++.+|..+. + +       ..+|+
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~-~-------~~~D~  218 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-Y-------PEADA  218 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC-C-C-------CCCCE
Confidence            457999999999999999999998 78999999              46778999999998753 1 2       34799


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++..-
T Consensus       219 v~~~~~  224 (306)
T TIGR02716       219 VLFCRI  224 (306)
T ss_pred             EEeEhh
Confidence            887543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.41  E-value=6e-07  Score=63.86  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++.+|||+|||+|+.+..+++..   .+|+++|             .....+++++.+|+.+..         .++||+|
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------~~~fD~V   86 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---------RGKFDVI   86 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------CCcccEE
Confidence            46789999999999999999864   3899999             111125888999986542         3589999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      +++.
T Consensus        87 i~n~   90 (179)
T TIGR00537        87 LFNP   90 (179)
T ss_pred             EECC
Confidence            9863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.41  E-value=7.6e-07  Score=68.06  Aligned_cols=58  Identities=21%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++++++.   +.+|+++|               .++  ++++...|..+. + +      .++||
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~-~-~------~~~fD  186 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA-S-I------QEEYD  186 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc-c-c------cCCcc
Confidence            5679999999999999999984   58999999               223  578888887653 1 2      46899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++..
T Consensus       187 ~I~~~~  192 (287)
T PRK12335        187 FILSTV  192 (287)
T ss_pred             EEEEcc
Confidence            999754

>PRK14967 putative methyltransferase; Provisional

Probab=98.40  E-value=8.8e-07  Score=65.24  Aligned_cols=60  Identities=13%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ..+|||+|||+|..++.+++. + ..+++++|             .....+++++.+|..+.++        .++||+|+
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--------~~~fD~Vi  106 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--------FRPFDVVV  106 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--------CCCeeEEE
Confidence            469999999999999999975 3 36999999             1112358899999876432        46899999


Q ss_pred             EcC
Q 042171           72 MDA   74 (125)
Q Consensus        72 id~   74 (125)
                      ++.
T Consensus       107 ~np  109 (223)
T PRK14967        107 SNP  109 (223)
T ss_pred             ECC
Confidence            863

>PLN02823 spermine synthase

Probab=98.40  E-value=2e-06  Score=67.49  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-----C-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-----V-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-----~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||.||+|.|.++.++++.-+ ..+|+.+|            .+     + .+|++++.+|+.+.+...      .
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~  174 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------D  174 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------C
Confidence            3688999999999999999888544 57899999            11     1 478999999999987542      4


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+||+|...
T Consensus       175 ~~yDvIi~D~~d  186 (336)
T PLN02823        175 EKFDVIIGDLAD  186 (336)
T ss_pred             CCccEEEecCCC
Confidence            689999999643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.39  E-value=9.1e-07  Score=66.98  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++..  +++|+++|            ....++++++.+|+.+. | +     +.++||+|+
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~-~-----~~~~FD~V~  122 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-D-F-----PENTFDMIY  122 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-C-C-----CCCCeEEEE
Confidence            34699999999999999998764  57999999            12235799999998753 2 2     257899999


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      +-
T Consensus       123 s~  124 (263)
T PTZ00098        123 SR  124 (263)
T ss_pred             Eh
Confidence            83

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.39  E-value=7e-07  Score=66.87  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C---CCCC--cEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A---RVDH--KINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~---~~~~--~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...+|||||||-|..+.+||+.   +.+|+++|        +   ...+  .+.....++++....       .++||+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~-------~~~FDvV  128 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA-------GGQFDVV  128 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc-------CCCccEE
Confidence            4579999999999999999996   69999999        1   1111  355777777766432       4799999


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      .+
T Consensus       129 ~c  130 (243)
T COG2227         129 TC  130 (243)
T ss_pred             EE
Confidence            97

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.38  E-value=1.3e-06  Score=66.96  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|               .++..++++..++...   ..      .++||
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~------~~~fD  227 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PI------EGKAD  227 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---cc------CCCce
Confidence            4579999999999999988864 4 46999999               3455677777776321   11      46899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|+++.....+..+++
T Consensus       228 lVvan~~~~~l~~ll~  243 (288)
T TIGR00406       228 VIVANILAEVIKELYP  243 (288)
T ss_pred             EEEEecCHHHHHHHHH
Confidence            9998765433334443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.34  E-value=8e-06  Score=60.93  Aligned_cols=62  Identities=23%  Similarity=0.370  Sum_probs=53.4

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..+||||||.|-+.+.+|+..| +.-+++||               .++. ++.++.+||.+.++.+..    .++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence            4789999999999999999998 68999999               4553 999999999999988742    4589999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      ++.
T Consensus       124 ~i~  126 (227)
T COG0220         124 YIN  126 (227)
T ss_pred             EEE
Confidence            883

>PRK03612 spermidine synthase; Provisional

Probab=98.34  E-value=3.2e-06  Score=69.73  Aligned_cols=67  Identities=21%  Similarity=0.369  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------C--C--------C-CCcEEEEecchHHHHHHHhhcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------A--R--------V-DHKINFIESEALSVLDQLLKDS   61 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~--~--------~-~~~i~~~~gd~~~~l~~~~~~~   61 (125)
                      .++++||+||||+|..+..+++. ++..+|+.+|          .  .        + .+|++++.+|+.+.+...    
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence            36889999999999999998874 4247999999          1  1        1 258999999999887643    


Q ss_pred             CCCCceeEEEEcCCC
Q 042171           62 ENEVNFDYAFMDADK   76 (125)
Q Consensus        62 ~~~~~fD~v~id~~~   76 (125)
                        .++||+|++|...
T Consensus       371 --~~~fDvIi~D~~~  383 (521)
T PRK03612        371 --AEKFDVIIVDLPD  383 (521)
T ss_pred             --CCCCCEEEEeCCC
Confidence              4689999999654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.34  E-value=2.3e-06  Score=67.84  Aligned_cols=62  Identities=11%  Similarity=0.093  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..++.+|..   ..+|+++|               .++ ++++++.+|+.+.++..      ..+||
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~------~~~~D  302 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQ------MSAPE  302 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhc------CCCCC
Confidence            3578999999999999999954   47899999               344 48999999998876532      24699


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|-.
T Consensus       303 ~vi~DPP  309 (374)
T TIGR02085       303 LVLVNPP  309 (374)
T ss_pred             EEEECCC
Confidence            9999854

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00452 methyltransferase, putative

Probab=98.34  E-value=6.2e-06  Score=64.20  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.++|||||||+|+.+..++..-  ..+|+++|               .....++.+..++..+. +.       ..+||
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~FD  190 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAFD  190 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCcC
Confidence            45799999999999999988753  25799999               12235678888887654 32       35799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .||+-+.
T Consensus       191 ~V~s~gv  197 (314)
T TIGR00452       191 TVFSMGV  197 (314)
T ss_pred             EEEEcch
Confidence            9998543

Known examples to date are restricted to the proteobacteria.

>PHA03411 putative methyltransferase; Provisional

Probab=98.32  E-value=1.6e-06  Score=66.43  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ..+|||+|||+|..++.+++..+ ..+|+++|          ..+ .+++++.+|+.+...        ..+||+|+++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-~~v~~v~~D~~e~~~--------~~kFDlIIsN  133 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-PEAEWITSDVFEFES--------NEKFDVVISN  133 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-cCCEEEECchhhhcc--------cCCCcEEEEc
Confidence            46899999999999999988765 57999999          122 478999999987632        3679999984

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=3.8e-06  Score=64.15  Aligned_cols=68  Identities=13%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ...|+|-|||+|..+.++++++.+.|++++.|               .++.+++++.+-|.... -...    ++..+|.
T Consensus       106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~-GF~~----ks~~aDa  180 (314)
T KOG2915|consen  106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS-GFLI----KSLKADA  180 (314)
T ss_pred             CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC-Cccc----cccccce
Confidence            35899999999999999999998899999999               68899999999988754 1111    1578999


Q ss_pred             EEEcCCCc
Q 042171           70 AFMDADKD   77 (125)
Q Consensus        70 v~id~~~~   77 (125)
                      ||+|-..+
T Consensus       181 VFLDlPaP  188 (314)
T KOG2915|consen  181 VFLDLPAP  188 (314)
T ss_pred             EEEcCCCh
Confidence            99986543

>PRK14968 putative methyltransferase; Provisional

Probab=98.31  E-value=2.4e-06  Score=60.44  Aligned_cols=60  Identities=17%  Similarity=0.370  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCc-EEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK-INFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~-i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++|||+|||+|+.+..+++.   +.+++++|               .++.++ +.++.+|..+.++        ..+|
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~   91 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GDKF   91 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------ccCc
Confidence            4568999999999999999987   58999999               233333 8899998866432        3479


Q ss_pred             eEEEEcC
Q 042171           68 DYAFMDA   74 (125)
Q Consensus        68 D~v~id~   74 (125)
                      |+|+.+.
T Consensus        92 d~vi~n~   98 (188)
T PRK14968         92 DVILFNP   98 (188)
T ss_pred             eEEEECC
Confidence            9999764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.30  E-value=1.8e-06  Score=67.89  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ..+|||||||+|..++.+++.++ +.+++++|          ... ..+++++.+|+.+. + +     ..++||+|++.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p-~-----~~~sFDvVIs~  185 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-P-F-----PTDYADRYVSA  185 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-C-C-----CCCceeEEEEc
Confidence            45999999999999999999886 58999999          111 24788999999764 3 2     14789999986


Q ss_pred             CC
Q 042171           74 AD   75 (125)
Q Consensus        74 ~~   75 (125)
                      ..
T Consensus       186 ~~  187 (340)
T PLN02490        186 GS  187 (340)
T ss_pred             Ch
Confidence            54

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.29  E-value=1.1e-06  Score=65.50  Aligned_cols=63  Identities=21%  Similarity=0.308  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ++.+|||+|||+|..+..+++.   +.+++++|         ......+.++.+|+.+. | +     .+++||+|++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~V~s~~  111 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESL-P-L-----ATATFDLAWSNL  111 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-c-C-----CCCcEEEEEECc
Confidence            3578999999999999888763   57999999         11112356888998764 3 2     256899999865


Q ss_pred             CC
Q 042171           75 DK   76 (125)
Q Consensus        75 ~~   76 (125)
                      ..
T Consensus       112 ~l  113 (251)
T PRK10258        112 AV  113 (251)
T ss_pred             hh
Confidence            43

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.29  E-value=1.5e-06  Score=64.05  Aligned_cols=61  Identities=7%  Similarity=-0.031  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQL   57 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~   57 (125)
                      ...+|||+|||.|..++|||+.   +-+|+++|            +++              ..+|+++++|..+.-+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            3469999999999999999975   68899999            122              236899999998763221


Q ss_pred             hhcCCCCCceeEEEEc
Q 042171           58 LKDSENEVNFDYAFMD   73 (125)
Q Consensus        58 ~~~~~~~~~fD~v~id   73 (125)
                            ..+||.|+--
T Consensus       111 ------~~~fD~i~D~  120 (213)
T TIGR03840       111 ------LGPVDAVYDR  120 (213)
T ss_pred             ------CCCcCEEEec
Confidence                  3568988743

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.25  E-value=2.3e-06  Score=63.27  Aligned_cols=59  Identities=5%  Similarity=0.031  Sum_probs=46.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHHh
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQLL   58 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~~   58 (125)
                      ..+||++|||.|..++|||+.   +.+|+++|            .++              ..+|++.++|..+..+.. 
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~-  113 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD-  113 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence            469999999999999999984   68999999            122              257899999998764321 


Q ss_pred             hcCCCCCceeEEEE
Q 042171           59 KDSENEVNFDYAFM   72 (125)
Q Consensus        59 ~~~~~~~~fD~v~i   72 (125)
                           ...||+|+-
T Consensus       114 -----~~~fd~v~D  122 (218)
T PRK13255        114 -----LADVDAVYD  122 (218)
T ss_pred             -----CCCeeEEEe
Confidence                 357999984

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.6e-06  Score=63.97  Aligned_cols=74  Identities=11%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCE-EEEEe-----------------------CCC-CCcEEEEecchHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQ-ITAID-----------------------ARV-DHKINFIESEALSVLDQLL   58 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-v~~iD-----------------------~~~-~~~i~~~~gd~~~~l~~~~   58 (125)
                      +..+.||+|+|+||.|.++++-+...|. .++||                       ..+ ..++.+++||.....+.  
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e--  159 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE--  159 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence            3458999999999999999988765555 49999                       011 13678999999987664  


Q ss_pred             hcCCCCCceeEEEEcCCCcCCHH-HHh
Q 042171           59 KDSENEVNFDYAFMDADKDNYCN-YMR   84 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~~~~~~~-~~~   84 (125)
                           ..+||.|++.|+...-++ +++
T Consensus       160 -----~a~YDaIhvGAaa~~~pq~l~d  181 (237)
T KOG1661|consen  160 -----QAPYDAIHVGAAASELPQELLD  181 (237)
T ss_pred             -----cCCcceEEEccCccccHHHHHH
Confidence                 589999999988776654 555

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.24  E-value=3.8e-06  Score=61.17  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.++||+|||.|-.+++||+.   +-.|+++|               .++  .|+....|..+.-  +      ...||
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~--~------~~~yD   96 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFD--F------PEEYD   96 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS---------TTTEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcc--c------cCCcC
Confidence            6789999999999999999997   78999999               334  3888888876542  2      36799


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|++.
T Consensus        97 ~I~st  101 (192)
T PF03848_consen   97 FIVST  101 (192)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99864

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.23  E-value=3.1e-06  Score=61.83  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=42.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      -.++||+|||.|..|..||...   .+++++|             .+. ++|++++++..+..|        .++||+|+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P--------~~~FDLIV  111 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP--------EGRFDLIV  111 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT-----------SS-EEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC--------CCCeeEEE
Confidence            3589999999999999999985   5799999             444 689999999987755        58999999


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      +.
T Consensus       112 ~S  113 (201)
T PF05401_consen  112 LS  113 (201)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.23  E-value=2.2e-06  Score=67.34  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+++..| ..+|+++|               .++  ..+++.+|..+.   .      .++||+
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~---~------~~~fDl  264 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD---I------KGRFDM  264 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc---c------CCCccE
Confidence            45899999999999999999877 68999999               223  246677776542   2      367999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++-
T Consensus       265 IvsNP  269 (342)
T PRK09489        265 IISNP  269 (342)
T ss_pred             EEECC
Confidence            99854

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.23  E-value=6.5e-06  Score=51.05  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=47.9

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +|+|+|||+|..+..+++ . ...+++++|              .....+++++.+|..+..+.      ...+||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE------ADESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc------cCCceEEEEE
Confidence            489999999999999988 3 368999999              12335789999999877431      1467999998


Q ss_pred             cCCC
Q 042171           73 DADK   76 (125)
Q Consensus        73 d~~~   76 (125)
                      +..-
T Consensus        73 ~~~~   76 (107)
T cd02440          73 DPPL   76 (107)
T ss_pred             ccce
Confidence            6654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.23  E-value=1.5e-06  Score=62.61  Aligned_cols=65  Identities=18%  Similarity=0.246  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ...+|||||||+|..+..+++..  +.+++++| +      ....+++++.+|+.+.++.+     ..++||+|++...
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~-----~~~sfD~Vi~~~~   84 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAF-----PDKSFDYVILSQT   84 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhccccc-----CCCCcCEEEEhhH
Confidence            35689999999999999988764  45789999 1      01245788999987644323     2478999998654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.23  E-value=5.7e-06  Score=63.83  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..|..+++.   ..+|+++|               .+..++++++.+|+.+. +        ..+||
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-~--------~~~~d  103 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-E--------FPYFD  103 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-c--------ccccC
Confidence            3468999999999999999986   46799999               23346899999999865 1        24689


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .|+.+
T Consensus       104 ~VvaN  108 (294)
T PTZ00338        104 VCVAN  108 (294)
T ss_pred             EEEec
Confidence            88864

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.22  E-value=9.8e-06  Score=62.64  Aligned_cols=72  Identities=13%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC--CCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV--DHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ...+||.+||.|.-|..+++.++++++|+++|          ..+  .+++++++++..+....+..+   ..++|.|++
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~---~~~vDgIl~   96 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG---LGKVDGILL   96 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC---CCccCEEEE
Confidence            34899999999999999999998789999999          223  358999999999875544210   137999999


Q ss_pred             cCCCcCC
Q 042171           73 DADKDNY   79 (125)
Q Consensus        73 d~~~~~~   79 (125)
                      |-...++
T Consensus        97 DLGvSs~  103 (296)
T PRK00050         97 DLGVSSP  103 (296)
T ss_pred             CCCcccc
Confidence            9776543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.22  E-value=6.5e-06  Score=65.10  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCC--------
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSE--------   62 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~--------   62 (125)
                      .+|||++||+|..++.+++..   .+|+++|               .++ ++++++.+|+.+.++.+.+...        
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccc
Confidence            579999999999999999874   4899999               345 4899999999998776532100        


Q ss_pred             -CCCceeEEEEcCCC
Q 042171           63 -NEVNFDYAFMDADK   76 (125)
Q Consensus        63 -~~~~fD~v~id~~~   76 (125)
                       ...+||+||+|-.-
T Consensus       284 ~~~~~~D~v~lDPPR  298 (362)
T PRK05031        284 LKSYNFSTIFVDPPR  298 (362)
T ss_pred             ccCCCCCEEEECCCC
Confidence             01259999998763

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.22  E-value=3.7e-06  Score=65.48  Aligned_cols=59  Identities=19%  Similarity=0.100  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-C------CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-V------DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-~------~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +..+|||||||+|..++.+++.   +.+|+++|            .. .      ..++++..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            4569999999999999999985   57999999            11 0      23578888886432          3


Q ss_pred             CceeEEEEcCC
Q 042171           65 VNFDYAFMDAD   75 (125)
Q Consensus        65 ~~fD~v~id~~   75 (125)
                      ++||+|++-..
T Consensus       211 ~~fD~Vv~~~v  221 (315)
T PLN02585        211 GKYDTVTCLDV  221 (315)
T ss_pred             CCcCEEEEcCE
Confidence            67999987443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=98.22  E-value=5.2e-06  Score=61.06  Aligned_cols=74  Identities=24%  Similarity=0.368  Sum_probs=42.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHh---hCCCCCEEEEEe-------------CCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTAL---TIPEDGQITAID-------------ARVDHKINFIESEALSV--LDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~---~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~--l~~~~~~~~~~   64 (125)
                      .+|..|+|+|+..|-|++|+|.   .++..++|++||             .++.++|++++||+.+.  +..... ....
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~-~~~~  109 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRE-LASP  109 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGS-S---
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHH-hhcc
Confidence            5899999999999999999886   444579999999             24558999999999864  111100 0012


Q ss_pred             CceeEEEEcCCCc
Q 042171           65 VNFDYAFMDADKD   77 (125)
Q Consensus        65 ~~fD~v~id~~~~   77 (125)
                      ..-.+|+.|+.+.
T Consensus       110 ~~~vlVilDs~H~  122 (206)
T PF04989_consen  110 PHPVLVILDSSHT  122 (206)
T ss_dssp             -SSEEEEESS---
T ss_pred             CCceEEEECCCcc
Confidence            3466999999864

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.18  E-value=3.9e-06  Score=64.85  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+.++|||+|||||..++..++ ++ ..+|+++|               .++.+++++.  ...+.         ...+|
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~k-lG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~  226 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAK-LG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKF  226 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHH-TT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-E
T ss_pred             cCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccC
Confidence            4567999999999999999887 44 46899999               6777777663  11111         14789


Q ss_pred             eEEEEcC
Q 042171           68 DYAFMDA   74 (125)
Q Consensus        68 D~v~id~   74 (125)
                      |+|+.+-
T Consensus       227 dlvvANI  233 (295)
T PF06325_consen  227 DLVVANI  233 (295)
T ss_dssp             EEEEEES
T ss_pred             CEEEECC
Confidence            9999743

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=3.4e-06  Score=65.09  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+|||+|||.|+.++.+++..| ..+++.+|               .++ ++..+..+|..+-.         .++||+|
T Consensus       160 ~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~-~~~~v~~s~~~~~v---------~~kfd~I  228 (300)
T COG2813         160 GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGV-ENTEVWASNLYEPV---------EGKFDLI  228 (300)
T ss_pred             CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCC-CccEEEEecccccc---------cccccEE
Confidence            3899999999999999999998 89999999               222 33366777776542         3489999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      +++
T Consensus       229 isN  231 (300)
T COG2813         229 ISN  231 (300)
T ss_pred             EeC
Confidence            974

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.15  E-value=7.5e-06  Score=61.78  Aligned_cols=58  Identities=26%  Similarity=0.273  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..|..+++.   ..+|+++|            ....++++++.+|+.+. + +       ..||.|+
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-~-~-------~~~d~Vv   96 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-D-L-------PEFNKVV   96 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-C-c-------hhceEEE
Confidence            3568999999999999999987   36899999            11136899999999864 2 2       3478888


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      .+
T Consensus        97 ~N   98 (258)
T PRK14896         97 SN   98 (258)
T ss_pred             Ec
Confidence            64

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.15  E-value=4.9e-07  Score=58.07  Aligned_cols=27  Identities=33%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             EEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            9 IEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         9 LeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ||||||+|..+..+++..+ ..+++++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D   27 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVD   27 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEE
Confidence            7999999999999999996 89999999

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.15  E-value=9.5e-06  Score=64.90  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=54.1

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCC-EEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDG-QITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~-~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++||++-|+||..++..|.+   ++ +|++||               .++. +++.++++|+.+++......   ..+|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CCcc
Confidence            679999999999999998886   55 899999               5654 57999999999999887432   4589


Q ss_pred             eEEEEcC
Q 042171           68 DYAFMDA   74 (125)
Q Consensus        68 D~v~id~   74 (125)
                      |+|++|-
T Consensus       292 DlIilDP  298 (393)
T COG1092         292 DLIILDP  298 (393)
T ss_pred             cEEEECC
Confidence            9999984

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.14  E-value=4.7e-06  Score=67.58  Aligned_cols=62  Identities=23%  Similarity=0.245  Sum_probs=48.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v~   71 (125)
                      ..+|||||||+|..+..+++.   ..+|+++|            .+..++++++.+|+.+. ++ +     +.++||+|+
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~I~  108 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-I-----SDGSVDLIF  108 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-C-----CCCCEEEEe
Confidence            468999999999999999986   46899999            22346799999998642 22 2     247899999


Q ss_pred             EcCC
Q 042171           72 MDAD   75 (125)
Q Consensus        72 id~~   75 (125)
                      +...
T Consensus       109 ~~~~  112 (475)
T PLN02336        109 SNWL  112 (475)
T ss_pred             hhhh
Confidence            8654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=5.2e-06  Score=64.19  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      .++++|||+|||+|..++.+++ ++ ..+++++|
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~D  192 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVD  192 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHH-cC-CceEEEec
Confidence            4688999999999999999887 44 46799999

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.13  E-value=1.7e-05  Score=60.95  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-CCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-VDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +|++||-||-|.|..+..+++..+ --+++.+|                 .+ ..+|++++.+|+.+++...      ..
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~  148 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EE  148 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CC
Confidence            567999999999999999998765 68899998                 12 2589999999999998764      35


Q ss_pred             ceeEEEEcCCCc
Q 042171           66 NFDYAFMDADKD   77 (125)
Q Consensus        66 ~fD~v~id~~~~   77 (125)
                      +||+|++|....
T Consensus       149 ~fDvIi~D~tdp  160 (282)
T COG0421         149 KFDVIIVDSTDP  160 (282)
T ss_pred             cCCEEEEcCCCC
Confidence            899999997654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.12  E-value=3.4e-06  Score=63.98  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------------CCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------------ARVDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++|||+|||+|..+..||+.   +.+|++||                    .++.-++++...++.+.          .+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999996   68999999                    11222466666666544          46


Q ss_pred             ceeEEEEc
Q 042171           66 NFDYAFMD   73 (125)
Q Consensus        66 ~fD~v~id   73 (125)
                      .||.|++.
T Consensus       158 ~fDaVvcs  165 (282)
T KOG1270|consen  158 KFDAVVCS  165 (282)
T ss_pred             ccceeeeH
Confidence            69999974

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.11  E-value=7e-06  Score=63.57  Aligned_cols=63  Identities=25%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+.++|||||||.||.+..|+.+-  ...|+++|               .+.. ...+......+.+|.       .+.|
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-------~~~F  183 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-------LGAF  183 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-------cCCc
Confidence            467899999999999999999872  35799999               2332 223333345555554       3789


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |.||+=+-
T Consensus       184 DtVF~MGV  191 (315)
T PF08003_consen  184 DTVFSMGV  191 (315)
T ss_pred             CEEEEeee
Confidence            99998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.10  E-value=1.7e-05  Score=57.19  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...++||+-+|||..++..+.+-  ..+|+.||               .++.++++++.+|+...++.+...   ..+||
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~---~~~fD  116 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK---GEKFD  116 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC---TS-EE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc---CCCce
Confidence            45789999999999999765541  35899999               455568999999999888776432   57899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +||+|-.
T Consensus       117 iIflDPP  123 (183)
T PF03602_consen  117 IIFLDPP  123 (183)
T ss_dssp             EEEE--S
T ss_pred             EEEECCC
Confidence            9999854

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.10  E-value=1.6e-05  Score=62.68  Aligned_cols=76  Identities=12%  Similarity=0.111  Sum_probs=53.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhc------CC-
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKD------SE-   62 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~------~~-   62 (125)
                      +.+|||++||+|..++.+++..   .+|+++|               .++ ++++++.+|+.+.++...+.      .+ 
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  273 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGI  273 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhcccccccccc
Confidence            3479999999999999999885   4899999               344 47999999999887642110      00 


Q ss_pred             --CCCceeEEEEcCCCcC-CHHHHh
Q 042171           63 --NEVNFDYAFMDADKDN-YCNYMR   84 (125)
Q Consensus        63 --~~~~fD~v~id~~~~~-~~~~~~   84 (125)
                        ....||+||+|-.... .+..++
T Consensus       274 ~~~~~~~d~v~lDPPR~G~~~~~l~  298 (353)
T TIGR02143       274 DLKSYNCSTIFVDPPRAGLDPDTCK  298 (353)
T ss_pred             ccccCCCCEEEECCCCCCCcHHHHH
Confidence              0123899999976332 344444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.09  E-value=1e-05  Score=60.69  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giD  149 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVD  149 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEE
Confidence            5679999999999999987764 3 35799999

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.09  E-value=2.6e-05  Score=59.19  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=56.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCC-----CEEEEEe------------C---CCCC--cEEEEecchHHHHHHHhhcCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPED-----GQITAID------------A---RVDH--KINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~-----~~v~~iD------------~---~~~~--~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      ..++||+++|||..|..+.+.++..     ++|+.+|            +   ++.+  ++.++.+||+++ | +     
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F-----  173 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F-----  173 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C-----
Confidence            3589999999999999999999742     8999999            2   4544  499999999866 5 5     


Q ss_pred             CCCceeEEEEcCCCcCCHH
Q 042171           63 NEVNFDYAFMDADKDNYCN   81 (125)
Q Consensus        63 ~~~~fD~v~id~~~~~~~~   81 (125)
                      ++.+||...+...-++++.
T Consensus       174 dd~s~D~yTiafGIRN~th  192 (296)
T KOG1540|consen  174 DDDSFDAYTIAFGIRNVTH  192 (296)
T ss_pred             CCCcceeEEEecceecCCC
Confidence            3689999999877766543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.08  E-value=1.3e-05  Score=57.11  Aligned_cols=66  Identities=20%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CC--CCCcEEEEecchHHHH-HHHhhcCCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------AR--VDHKINFIESEALSVL-DQLLKDSENEV   65 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~--~~~~i~~~~gd~~~~l-~~~~~~~~~~~   65 (125)
                      .+.++|||+|||+|..++.+++..+ ..+|+..|              .+  ...++++..-++.+.. +...    ...
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~~  118 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EPH  118 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S-S
T ss_pred             cCCceEEEECCccchhHHHHHhccC-CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc----ccc
Confidence            4678999999999999999999854 68999999              22  4567888887775533 2221    146


Q ss_pred             ceeEEEEc
Q 042171           66 NFDYAFMD   73 (125)
Q Consensus        66 ~fD~v~id   73 (125)
                      +||+|+..
T Consensus       119 ~~D~Ilas  126 (173)
T PF10294_consen  119 SFDVILAS  126 (173)
T ss_dssp             SBSEEEEE
T ss_pred             cCCEEEEe
Confidence            89999963

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.07  E-value=1.6e-05  Score=63.33  Aligned_cols=58  Identities=12%  Similarity=0.053  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ...+|||||||+|..++.+++..  +.+|+++|          ... ...+++..+|..+.          .++||.|++
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l----------~~~fD~Ivs  234 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL----------NGQFDRIVS  234 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc----------CCCCCEEEE
Confidence            34699999999999999999876  47999999          111 12478888887543          367999986


Q ss_pred             c
Q 042171           73 D   73 (125)
Q Consensus        73 d   73 (125)
                      -
T Consensus       235 ~  235 (383)
T PRK11705        235 V  235 (383)
T ss_pred             e
Confidence            4

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.06  E-value=1.9e-05  Score=58.10  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++.   ..+++++|             .....+++++.++..+.....      .++||+|
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~fD~I  118 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH------PGQFDVV  118 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc------CCCccEE
Confidence            4568999999999999998875   46899999             111235788888887664321      4789999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      ++..
T Consensus       119 i~~~  122 (233)
T PRK05134        119 TCME  122 (233)
T ss_pred             EEhh
Confidence            9853

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.05  E-value=2e-05  Score=54.00  Aligned_cols=67  Identities=19%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC--CC--CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR--VD--HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDN   78 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~--~~--~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~   78 (125)
                      .+..+|||||||+|..+..|++.   +.+++++|..  ..  .++....-+..+. +..      .++||+|++...-.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~~~~~~~~~~~~~~-~~~------~~~fD~i~~~~~l~~   90 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEKRNVVFDNFDAQDP-PFP------DGSFDLIICNDVLEH   90 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHHTTSEEEEEECHTH-HCH------SSSEEEEEEESSGGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhhhhhhhhhhhhhhh-hcc------ccchhhHhhHHHHhh
Confidence            45679999999999999999665   3599999911  00  2233333322222 111      589999998655443


Q ss_pred             C
Q 042171           79 Y   79 (125)
Q Consensus        79 ~   79 (125)
                      .
T Consensus        91 ~   91 (161)
T PF13489_consen   91 L   91 (161)
T ss_dssp             S
T ss_pred             c
Confidence            3

...

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.05  E-value=4.3e-05  Score=58.83  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++||++-|+||..++..+.. + ..+|++||               .++. ++++++.+|+.+.+..+..    .++|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~~f  196 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GGRF  196 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT-E
T ss_pred             CCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CCCC
Confidence            4679999999999999987764 1 24799999               5664 6899999999998877643    4689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|-.
T Consensus       197 D~IIlDPP  204 (286)
T PF10672_consen  197 DLIILDPP  204 (286)
T ss_dssp             EEEEE--S
T ss_pred             CEEEECCC
Confidence            99999854

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.05  E-value=1.2e-05  Score=60.98  Aligned_cols=87  Identities=23%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccH----HHHHHHhhCCC----CCEEEEEe----------CCC--------------------------
Q 042171            4 KLKKTIEIGVFTGY----SLFLTALTIPE----DGQITAID----------ARV--------------------------   39 (125)
Q Consensus         4 ~~~~vLeiG~g~G~----~t~~la~~~~~----~~~v~~iD----------~~~--------------------------   39 (125)
                      ++.+|+++|||||.    .++.+++..+.    +.+|+++|          .+.                          
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            34699999999996    45566665542    47899999          221                          


Q ss_pred             -----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhc
Q 042171           40 -----DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVD  108 (125)
Q Consensus        40 -----~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (125)
                           .++|+|.++|..+..+.       .++||+|++    ++...||+       .....+.++++.+.|+.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~c----rnvl~yf~-------~~~~~~~l~~l~~~L~p  234 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFC----RNVLIYFD-------EPTQRKLLNRFAEALKP  234 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEe----chhHHhCC-------HHHHHHHHHHHHHHhCC
Confidence                 24688999998865221       478999997    23334443       11134456666666643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.04  E-value=1.8e-05  Score=57.67  Aligned_cols=62  Identities=16%  Similarity=0.110  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||+|||+|.++..+++.   ..+++++|             .... .++++..+++.+.....      .++||+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~D~  115 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------AKSFDV  115 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC------CCCccE
Confidence            4679999999999999998875   35699999             1111 26889999988763321      368999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++..
T Consensus       116 i~~~~  120 (224)
T TIGR01983       116 VTCME  120 (224)
T ss_pred             EEehh
Confidence            99853

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.02  E-value=1.1e-05  Score=63.35  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+.+.|||+|||||..+++.|++-  ..+|+++|              .++.+.|++++|...+.  .|+     .++.|
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eKVD  129 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEKVD  129 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE--ecC-----cccee
Confidence            467899999999999999999974  46899999              67888899999999986  331     47899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .|++.
T Consensus       130 iIvSE  134 (346)
T KOG1499|consen  130 IIVSE  134 (346)
T ss_pred             EEeeh
Confidence            99963

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.00  E-value=2.9e-05  Score=63.52  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|+++|.=|..||..++..|.|+|+|               .|+ .++.+...|+....+.+      ...||
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~------~~~fD  185 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAAL------PETFD  185 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhc------hhhcC
Confidence            456899999999999999999998789999999               556 56888889987653333      35799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       186 ~ILvDaP  192 (470)
T PRK11933        186 AILLDAP  192 (470)
T ss_pred             eEEEcCC
Confidence            9999965

>TIGR03438 probable methyltransferase

Probab=97.97  E-value=3.6e-05  Score=59.35  Aligned_cols=74  Identities=14%  Similarity=0.028  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCC-CCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARV-DHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+.+|||+|||+|..|..+++++++..+++++|              ... ..+|..+.+|..+.++... ++ ...+..
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~-~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EP-AAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-cc-ccCCeE
Confidence            347899999999999999999986568999999              111 1357788999987544321 10 012455


Q ss_pred             EEEEcCCCcCC
Q 042171           69 YAFMDADKDNY   79 (125)
Q Consensus        69 ~v~id~~~~~~   79 (125)
                      +++++..-.++
T Consensus       141 ~~~~gs~~~~~  151 (301)
T TIGR03438       141 GFFPGSTIGNF  151 (301)
T ss_pred             EEEecccccCC
Confidence            66666654444

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.96  E-value=2.3e-05  Score=61.74  Aligned_cols=63  Identities=13%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..++|||||++|-+|-.+++.   +++|++|| ..      -..+|+.+++|.....|.       ..++|++++|...
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-------~~~vDwvVcDmve  280 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-------RKNVDWLVCDMVE  280 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCC-------CCCCCEEEEeccc
Confidence            4569999999999999999986   67999999 11      236899999999877553       3689999999874

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.94  E-value=2.3e-05  Score=59.55  Aligned_cols=47  Identities=23%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..+++..   .+|+++|          ..+ .++++++++|+.+.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~   99 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV   99 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence            45689999999999999999984   4899999          112 25899999999875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.94  E-value=6.6e-05  Score=58.48  Aligned_cols=58  Identities=14%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.++..   +.+++++|               .++.+ ++++.+|+.+. |..      .++||.
T Consensus       183 g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~~------~~~~D~  251 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PLS------SESVDA  251 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Ccc------cCCCCE
Confidence            458999999999998886653   68999999               35544 88999999864 321      468999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |++|
T Consensus       252 Iv~d  255 (329)
T TIGR01177       252 IATD  255 (329)
T ss_pred             EEEC
Confidence            9986

This family is found exclusively in the Archaea.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=5.2e-05  Score=55.73  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEecchHH--HHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIESEALS--VLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~gd~~~--~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +...|+|+|+.+|.|+-.+++.++++++|+++|    ... ..|.++++|..+  .+..+... -...++|+|.+|++.
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-~~V~~iq~d~~~~~~~~~l~~~-l~~~~~DvV~sD~ap  121 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-PGVIFLQGDITDEDTLEKLLEA-LGGAPVDVVLSDMAP  121 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-CCceEEeeeccCccHHHHHHHH-cCCCCcceEEecCCC
Confidence            457899999999999999999998888999999    233 459999998874  22222111 024568999999886

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.93  E-value=2.7e-05  Score=57.72  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +.++|||||.|+|..+..++++.| +.+++..|       +.-.+||+++.||..+.+|         . +|++++-.-.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P---------~-~D~~~l~~vL  168 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLP---------V-ADVYLLRHVL  168 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCS---------S-ESEEEEESSG
T ss_pred             CccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhccccccccccccccHHhhhc---------c-ccceeeehhh
Confidence            457899999999999999999999 89999999       1116899999999984432         3 9999985444


Q ss_pred             cCC
Q 042171           77 DNY   79 (125)
Q Consensus        77 ~~~   79 (125)
                      +++
T Consensus       169 h~~  171 (241)
T PF00891_consen  169 HDW  171 (241)
T ss_dssp             GGS
T ss_pred             hhc
Confidence            443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.91  E-value=3.4e-05  Score=57.94  Aligned_cols=47  Identities=26%  Similarity=0.244  Sum_probs=38.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..|++..+   +++++|            .....+++++.+|+.+.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~   87 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV   87 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence            457899999999999999999853   599999            12236899999999865

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.88  E-value=6.9e-05  Score=56.38  Aligned_cols=67  Identities=18%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-CCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-VDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +|++||-||-|.|..+..+.+.-+ ..+|+.+|                 .+ -.+|++++.+|+...+...      .+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE  148 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred             CcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence            689999999999999999887543 57899999                 11 2469999999999987763      34


Q ss_pred             -ceeEEEEcCCCc
Q 042171           66 -NFDYAFMDADKD   77 (125)
Q Consensus        66 -~fD~v~id~~~~   77 (125)
                       +||+|++|...+
T Consensus       149 ~~yDvIi~D~~dp  161 (246)
T PF01564_consen  149 EKYDVIIVDLTDP  161 (246)
T ss_dssp             T-EEEEEEESSST
T ss_pred             CcccEEEEeCCCC
Confidence             899999998753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.86  E-value=2.8e-05  Score=55.30  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-C--CCcEEEEecchHHH--HHHHhhcCC-CCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-V--DHKINFIESEALSV--LDQLLKDSE-NEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-~--~~~i~~~~gd~~~~--l~~~~~~~~-~~~~fD~v~id~~~   76 (125)
                      +..+|||+||++|.|+-++++...+.++|+++|-+ .  ...+..+.+|..+.  ...+..... ...+||+|++|+..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~  101 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP  101 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence            35799999999999999999998557999999922 1  15677777775531  111211000 12689999999953

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.84  E-value=5.5e-05  Score=61.54  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI---PEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      ...|++||||+|......+++.   ....+|+|||               .++.++|+++++|..++-  +      ..+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--l------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--L------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--H------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--C------CCc
Confidence            4679999999999998877764   2246899999               567789999999999872  2      368


Q ss_pred             eeEEEEc
Q 042171           67 FDYAFMD   73 (125)
Q Consensus        67 fD~v~id   73 (125)
                      .|+|++-
T Consensus       259 vDIIVSE  265 (448)
T PF05185_consen  259 VDIIVSE  265 (448)
T ss_dssp             EEEEEE-
T ss_pred             eeEEEEe
Confidence            9999974

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=7.1e-05  Score=54.43  Aligned_cols=101  Identities=17%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..+.|+|+|||||..++..+. ++ ..+|+++|             ..+..+|.++.+|..+.          ...+|.+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~-lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~----------~~~~dtv  112 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAAL-LG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF----------RGKFDTV  112 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHh-cC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc----------CCccceE
Confidence            346799999999999998775 44 47899999             23556899999999765          4778988


Q ss_pred             EEcCCC-----cCCHHHHhhhC--CCCCCcchHHHHHHHHHHhhcCCCeEEEE
Q 042171           71 FMDADK-----DNYCNYMREQV--PDHFRGSSKQAILDLNRSLVDDPCVQLSH  116 (125)
Q Consensus        71 ~id~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (125)
                      +.+-.-     +.=.++++...  .+....-+..+.++|.++-..+-++++++
T Consensus       113 imNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~  165 (198)
T COG2263         113 IMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTH  165 (198)
T ss_pred             EECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEE
Confidence            875221     11122333111  11111113334788888887777765554

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=5.9e-05  Score=54.72  Aligned_cols=61  Identities=25%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-CCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-VDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+.-++|||||+|+.+..+++.+.++....++|            +. ...++..+..|....+.        .++.|++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--------~~~VDvL  114 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--------NESVDVL  114 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--------cCCccEE
Confidence            477899999999999999999998788899999            11 22357788888887654        4789988


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      +.
T Consensus       115 vf  116 (209)
T KOG3191|consen  115 VF  116 (209)
T ss_pred             EE
Confidence            85

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.81  E-value=8.5e-05  Score=59.29  Aligned_cols=61  Identities=18%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .+|||++||+|..++.+|+..+ ..+|+++|               .++ ++++++.+|+.+.++.       ..+||+|
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-------~~~fD~V  129 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHE-------ERKFDVV  129 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-------cCCCCEE
Confidence            4899999999999999998875 46899999               344 4577999999877642       2569999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++|--
T Consensus       130 ~lDP~  134 (382)
T PRK04338        130 DIDPF  134 (382)
T ss_pred             EECCC
Confidence            99864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.81  E-value=0.00021  Score=58.89  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=50.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ...+||||||.|-+++.+|+..| +..++++|               .++ .++.++.+|+......+.     ++++|-
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~sv~~  420 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NNSLDG  420 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----cccccE
Confidence            45789999999999999999998 78999999               445 588899998866554442     578999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |++.
T Consensus       421 i~i~  424 (506)
T PRK01544        421 IYIL  424 (506)
T ss_pred             EEEE
Confidence            9984

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=8e-05  Score=56.60  Aligned_cols=58  Identities=19%  Similarity=0.118  Sum_probs=45.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v~   71 (125)
                      ..+|||||+|.|..|..|++.   ..+|++||            ....+++++++||++.. ++.+       ..++.|+
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l-------~~~~~vV  100 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL-------AQPYKVV  100 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh-------cCCCEEE
Confidence            468999999999999999998   46699999            22457899999999975 2211       1577787


Q ss_pred             E
Q 042171           72 M   72 (125)
Q Consensus        72 i   72 (125)
                      .
T Consensus       101 a  101 (259)
T COG0030         101 A  101 (259)
T ss_pred             E
Confidence            5

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.71  E-value=0.00013  Score=52.87  Aligned_cols=60  Identities=23%  Similarity=0.334  Sum_probs=48.1

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +++|||||-|.=++.+|-..| +.+++.+|               -++ ++++++.+.+.+  +..      ..+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~------~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEY------RESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTT------TT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--ccc------CCCccEEE
Confidence            799999999999999999998 79999999               466 589999999998  221      57899999


Q ss_pred             EcCCC
Q 042171           72 MDADK   76 (125)
Q Consensus        72 id~~~   76 (125)
                      +-|-.
T Consensus       121 aRAv~  125 (184)
T PF02527_consen  121 ARAVA  125 (184)
T ss_dssp             EESSS
T ss_pred             eehhc
Confidence            86654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.70  E-value=0.00027  Score=51.30  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ....++||+=+|+|..++..+.+-  ..+++.||               .++..+++++..|+...++.+..    .++|
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~----~~~F  115 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT----REPF  115 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----CCcc
Confidence            346799999999999998866652  36899999               45568899999999987776632    2469


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+||+|-.-
T Consensus       116 DlVflDPPy  124 (187)
T COG0742         116 DLVFLDPPY  124 (187)
T ss_pred             cEEEeCCCC
Confidence            999998654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.66  E-value=0.00019  Score=52.57  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +...|+|.-||.|+.++.+|+.-+ ..+|+|+|               .++.++|+.+.+|+.+.++        ...||
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~d  171 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKFD  171 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EE
T ss_pred             cceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccC
Confidence            456899999999999999998544 67899999               6788889999999998865        37899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      -|+++-.+
T Consensus       172 rvim~lp~  179 (200)
T PF02475_consen  172 RVIMNLPE  179 (200)
T ss_dssp             EEEE--TS
T ss_pred             EEEECChH
Confidence            99986543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.63  E-value=0.00024  Score=53.70  Aligned_cols=59  Identities=12%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C------C--CCCcEEEEecchHHHHHHHhhcCCC
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A------R--VDHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~------~--~~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      +|||.-+|+|.-++.++..   +++|+.+|               +      +  +..|++++.+|+.+++...      
T Consensus        91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------  161 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------  161 (250)
T ss_pred             EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------
Confidence            7999999999999999987   68899999               1      1  2257999999999998764      


Q ss_pred             CCceeEEEEcC
Q 042171           64 EVNFDYAFMDA   74 (125)
Q Consensus        64 ~~~fD~v~id~   74 (125)
                      ..+||+||+|-
T Consensus       162 ~~~fDVVYlDP  172 (250)
T PRK10742        162 TPRPQVVYLDP  172 (250)
T ss_pred             CCCCcEEEECC
Confidence            35799999984

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.57  E-value=0.00062  Score=54.29  Aligned_cols=71  Identities=17%  Similarity=0.117  Sum_probs=55.2

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      -+|||.-||+|.-++.+++..+.-.+|+++|               .++ .+++++.+|+...+...      ..+||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHh------CCCCCEE
Confidence            4899999999999999999864246899999               223 36889999999887653      3679999


Q ss_pred             EEcCCCcCCHHHHh
Q 042171           71 FMDADKDNYCNYMR   84 (125)
Q Consensus        71 ~id~~~~~~~~~~~   84 (125)
                      ++|- .....++++
T Consensus       119 dlDP-fGs~~~fld  131 (374)
T TIGR00308       119 DIDP-FGTPAPFVD  131 (374)
T ss_pred             EeCC-CCCcHHHHH
Confidence            9998 334345655

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.54  E-value=6.9e-05  Score=55.50  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC--------------CCCcEEEEecchHHHHHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR--------------VDHKINFIESEALSVLDQL   57 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~--------------~~~~i~~~~gd~~~~l~~~   57 (125)
                      ...+||..|||.|+-.+|||..   +-+|+++|            .+              -..+|++.+||..+.-+..
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            3459999999999999999986   67999999            11              1246899999998763321


Q ss_pred             hhcCCCCCceeEEEE
Q 042171           58 LKDSENEVNFDYAFM   72 (125)
Q Consensus        58 ~~~~~~~~~fD~v~i   72 (125)
                            .++||+|+=
T Consensus       114 ------~g~fD~iyD  122 (218)
T PF05724_consen  114 ------VGKFDLIYD  122 (218)
T ss_dssp             ------HHSEEEEEE
T ss_pred             ------cCCceEEEE
Confidence                  357999994

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.53  E-value=0.00021  Score=52.92  Aligned_cols=62  Identities=18%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc-ee
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVN-FD   68 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~-fD   68 (125)
                      +.+++|||+|.|.=++-+|-..| +.+|+-+|               -++ ++++++++.+++.-+.        .+ ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc--------cccCc
Confidence            68999999999999999997777 67799999               345 6799999999887432        23 99


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|.+-|-.
T Consensus       138 ~vtsRAva  145 (215)
T COG0357         138 VVTSRAVA  145 (215)
T ss_pred             EEEeehcc
Confidence            99986543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.52  E-value=0.00025  Score=56.11  Aligned_cols=60  Identities=17%  Similarity=0.288  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.+-|||+|||+|..+...|.+-  ..+|+++|              ..+.+||+++.|..+++  ++      .++.|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~Dv  246 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKVDV  246 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhccE
Confidence            45778999999999999988862  46899999              45789999999999887  34      367999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      +++.
T Consensus       247 iISE  250 (517)
T KOG1500|consen  247 IISE  250 (517)
T ss_pred             EEec
Confidence            9864

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.52  E-value=0.00026  Score=52.83  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++..|+|.=||.|-.|+.+|..   ...|++||               .|+.+||+|++||.+++...+...   ...+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~~~  167 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIKYD  167 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hheee
Confidence            5678999999999999999987   45699999               688899999999999987665321   34488


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +||...
T Consensus       168 ~vf~sp  173 (263)
T KOG2730|consen  168 CVFLSP  173 (263)
T ss_pred             eeecCC
Confidence            998753

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.51  E-value=0.001  Score=50.98  Aligned_cols=66  Identities=21%  Similarity=0.229  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||.+++.|-=|..+|..++..|+|++.|               .|+ .++..+..|+....+...     ...||
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~-----~~~fd  158 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKP-----ESKFD  158 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHH-----TTTEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccc-----ccccc
Confidence            345899999999999999999998789999999               565 567777788887755442     34699


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       159 ~VlvDaP  165 (283)
T PF01189_consen  159 RVLVDAP  165 (283)
T ss_dssp             EEEEECS
T ss_pred             hhhcCCC
Confidence            9999964

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.51  E-value=0.00012  Score=50.52  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=40.2

Q ss_pred             CCCEEEEEcCcccH-HHHHHHhhCCCCCEEEEEeCC-------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGY-SLFLTALTIPEDGQITAIDAR-------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~-~t~~la~~~~~~~~v~~iD~~-------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|. .+..|++.   +..|+++|..       ....+.++.+|..+--..+      -..+|+|+.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~------y~~a~liys   83 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI------YKNAKLIYS   83 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH------HhcCCEEEE
Confidence            34689999999997 66666643   5799999911       1123567888877643333      255888874

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.50  E-value=0.0005  Score=49.38  Aligned_cols=74  Identities=19%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +...|||+|.|||..|-.+.++--++..+++||         ...-+-+.+++||+.+.-..+...  +...||.|++.-
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~--~gq~~D~viS~l  125 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH--KGQFFDSVISGL  125 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc--CCCeeeeEEecc
Confidence            345899999999999999888765578899999         122245679999999763233211  245699999754


Q ss_pred             CCcCC
Q 042171           75 DKDNY   79 (125)
Q Consensus        75 ~~~~~   79 (125)
                      ...+.
T Consensus       126 Pll~~  130 (194)
T COG3963         126 PLLNF  130 (194)
T ss_pred             ccccC
Confidence            44443

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.47  E-value=0.00017  Score=53.46  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=43.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEE-EEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKIN-FIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~-~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ...|||||||||..=-..--  .+..+|+++|              .....+++ |+.+++.+. |++.     +.++|.
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~-----d~s~Dt  148 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLA-----DGSYDT  148 (252)
T ss_pred             ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccc-----cCCeee
Confidence            34679999999987544221  1578999999              12334666 899998766 6663     689999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |+..
T Consensus       149 VV~T  152 (252)
T KOG4300|consen  149 VVCT  152 (252)
T ss_pred             EEEE
Confidence            9864

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.43  E-value=0.0003  Score=52.47  Aligned_cols=64  Identities=8%  Similarity=0.033  Sum_probs=47.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC--------------CCCcEEEEecchHHHHHHHh
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR--------------VDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~--------------~~~~i~~~~gd~~~~l~~~~   58 (125)
                      ..+||..|||.|.-++|||..   +-+|+++|            .+              -..+|+++++|..+.-+.- 
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-  119 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-  119 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence            469999999999999999986   67899999            11              1247899999998762210 


Q ss_pred             hcCCCCCceeEEEEcCC
Q 042171           59 KDSENEVNFDYAFMDAD   75 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~   75 (125)
                      .   ..++||+|+--+.
T Consensus       120 ~---~~~~fD~VyDra~  133 (226)
T PRK13256        120 N---NLPVFDIWYDRGA  133 (226)
T ss_pred             c---ccCCcCeeeeehh
Confidence            0   1367999885444

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.43  E-value=0.0004  Score=51.06  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=42.9

Q ss_pred             EEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            8 TIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      |.||||--||..++|.+.-. -.+++++|               .++.++|++..||.++.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999999754 46799999               78889999999999987653       234788888


Q ss_pred             cC
Q 042171           73 DA   74 (125)
Q Consensus        73 d~   74 (125)
                      .+
T Consensus        73 AG   74 (205)
T PF04816_consen   73 AG   74 (205)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.40  E-value=0.00021  Score=52.11  Aligned_cols=60  Identities=22%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||-|.....|++.== .++++++|               .++.+.|+|.+.|..+- ..+      ..+||
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~------~~qfd  138 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL------SGQFD  138 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc------cccee
Confidence            456999999999999999888522 36799999               46766799999998763 222      35566


Q ss_pred             EEE
Q 042171           69 YAF   71 (125)
Q Consensus        69 ~v~   71 (125)
                      +|+
T Consensus       139 lvl  141 (227)
T KOG1271|consen  139 LVL  141 (227)
T ss_pred             EEe
Confidence            665

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.34  E-value=0.00032  Score=52.35  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +.+.|||+|||||.+|.++++. + ..+|+++|
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD  105 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVD  105 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEe
Confidence            4568999999999999999986 3 47899999

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.32  E-value=6.2e-05  Score=56.21  Aligned_cols=60  Identities=20%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCc--EEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHK--INFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~--i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ++.-|||||||+|.|+-.+...   +-..+++|       ..+...  -.++.+|.-+-+|.      ..++||-+++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpf------rpGtFDg~IS  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPF------RPGTFDGVIS  118 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCC------CCCccceEEE
Confidence            4678999999999999776553   56689999       112111  24777787777774      3689999986

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.29  E-value=0.0009  Score=51.39  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+..|||||-|||..|..|.++   +.+|+|+|               .+.+.+.++++||....         +...||
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd  125 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFD  125 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---------CCcccc
Confidence            3558999999999999999997   67899999               34558899999998754         124588


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .++.+
T Consensus       126 ~cVsN  130 (315)
T KOG0820|consen  126 GCVSN  130 (315)
T ss_pred             eeecc
Confidence            88853

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.21  E-value=0.00066  Score=53.55  Aligned_cols=68  Identities=15%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhc---------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKD---------   60 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~---------   60 (125)
                      +.+|||+-||+|..++.||+..   .+|++||               .++ ++++++.+++.+....+...         
T Consensus       197 ~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~  272 (352)
T PF05958_consen  197 KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGI  272 (352)
T ss_dssp             TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS
T ss_pred             CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhh
Confidence            3489999999999999999874   6799999               355 68999999887653322100         


Q ss_pred             CCCCCceeEEEEcCCC
Q 042171           61 SENEVNFDYAFMDADK   76 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~   76 (125)
                      ......+|.|++|-.-
T Consensus       273 ~~~~~~~d~vilDPPR  288 (352)
T PF05958_consen  273 DLKSFKFDAVILDPPR  288 (352)
T ss_dssp             -GGCTTESEEEE---T
T ss_pred             hhhhcCCCEEEEcCCC
Confidence            0012368999998553

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.14  E-value=0.00067  Score=45.97  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=26.0

Q ss_pred             EEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            8 TIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +|||||+.|+.++++++..+ +++++++|
T Consensus         2 vlDiGa~~G~~~~~~~~~~~-~~~v~~~E   29 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGA-EGRVIAFE   29 (143)
T ss_pred             EEEccCCccHHHHHHHHhCC-CCEEEEEe
Confidence            79999999999999999876 67999999

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.14  E-value=0.0008  Score=50.85  Aligned_cols=47  Identities=15%  Similarity=0.099  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      +...|||||.|+|..|..|++..   .+++++|            ....++++++.+|+.++
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW   88 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred             CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence            45789999999999999999985   7899999            23457899999999875

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.13  E-value=0.0018  Score=49.09  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ..+..+|||||-+|..|+.||+.+. ...|.++|
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvD   89 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVD   89 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhc-cceeeEee
Confidence            3578899999999999999999997 57799999

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.0056  Score=44.86  Aligned_cols=67  Identities=12%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEec-chHH------HHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIES-EALS------VLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~g-d~~~------~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||+|+.+|.|+--..+.+.++|.|.+||    .+. +-++++.+ |..+      +...+     ++.+.|.|++
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~-~Ga~~i~~~dvtdp~~~~ki~e~l-----p~r~VdvVlS  142 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP-EGATIIQGNDVTDPETYRKIFEAL-----PNRPVDVVLS  142 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC-CCcccccccccCCHHHHHHHHHhC-----CCCcccEEEe
Confidence            346999999999999999999997799999999    333 33555555 3322      12222     3578999999


Q ss_pred             cCCC
Q 042171           73 DADK   76 (125)
Q Consensus        73 d~~~   76 (125)
                      |..+
T Consensus       143 DMap  146 (232)
T KOG4589|consen  143 DMAP  146 (232)
T ss_pred             ccCC
Confidence            9875

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.001  Score=54.74  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee-E
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD-Y   69 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD-~   69 (125)
                      +.+||+.||||.+++++|+.+   .+|++||               .|+ ++.+|+.|-+++.++.+.+++  ..+=+ +
T Consensus       385 k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~~~sl~~~~--~~~~~~v  458 (534)
T KOG2187|consen  385 KTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDLFPSLLTPC--CDSETLV  458 (534)
T ss_pred             cEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc-cceeeeecchhhccchhcccC--CCCCceE
Confidence            567999999999999999985   5799999               234 689999999999888875432  12345 5


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      +++|-.
T Consensus       459 ~iiDPp  464 (534)
T KOG2187|consen  459 AIIDPP  464 (534)
T ss_pred             EEECCC
Confidence            666644

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.91  E-value=0.0019  Score=44.33  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=28.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC---CCCEEEEEe
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIP---EDGQITAID   36 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~---~~~~v~~iD   36 (125)
                      .++..|+|+|||-||.+..++..++   .+.+|++||
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD   60 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGID   60 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEE
Confidence            4577999999999999999999431   368999999

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.0047  Score=50.21  Aligned_cols=67  Identities=10%  Similarity=0.131  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..++||+=||.|..++++|+.   ..+|+++|               .++ ++++|+.+++.+..+...    ....+|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~~----~~~~~d  364 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAWW----EGYKPD  364 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhcc----ccCCCC
Confidence            3468999999999999999965   47899999               455 459999999999877642    135799


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      .|++|-.-.-
T Consensus       365 ~VvvDPPR~G  374 (432)
T COG2265         365 VVVVDPPRAG  374 (432)
T ss_pred             EEEECCCCCC
Confidence            9999965433

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.84  E-value=0.002  Score=49.51  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID----------------ARVDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      .|++|+=||+| .-.++++|++....+..|+++|                .++..+++|+.+|..+....       -..
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~  192 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE  192 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence            36799999999 5677788887655478999999                35778999999999865222       267


Q ss_pred             eeEEEEcCCCc
Q 042171           67 FDYAFMDADKD   77 (125)
Q Consensus        67 fD~v~id~~~~   77 (125)
                      ||.||+.+-..
T Consensus       193 ~DvV~lAalVg  203 (276)
T PF03059_consen  193 YDVVFLAALVG  203 (276)
T ss_dssp             -SEEEE-TT-S
T ss_pred             CCEEEEhhhcc
Confidence            99999987654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.0012  Score=46.54  Aligned_cols=62  Identities=19%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..+.++|+|||+|...  ++-.+++.-.|+++|             ..+.-++.+++.+..+..+.       .+.||-+
T Consensus        48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~-------~g~fDta  118 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK-------GGIFDTA  118 (185)
T ss_pred             cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc-------CCeEeeE
Confidence            4678999999999988  444566567899999             12344678899888876443       5789999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      +++-
T Consensus       119 viNp  122 (185)
T KOG3420|consen  119 VINP  122 (185)
T ss_pred             EecC
Confidence            9874

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0036  Score=47.29  Aligned_cols=29  Identities=17%  Similarity=0.123  Sum_probs=23.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      .+.++|+|||+|-.++-+|....   +|+++|
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k---~VIatD   62 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYK---EVIATD   62 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhh---hheeec
Confidence            34789999999977777887754   599999

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.59  E-value=0.009  Score=50.63  Aligned_cols=74  Identities=19%  Similarity=0.176  Sum_probs=53.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC-------CC----CCEEEEEe-C---------------------------------CC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI-------PE----DGQITAID-A---------------------------------RV   39 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~-------~~----~~~v~~iD-~---------------------------------~~   39 (125)
                      .-+|+|+|=|+|++.+...+..       ++    .-+++++| .                                 ++
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999999877655       21    24789999 0                                 11


Q ss_pred             ------CC--cEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC-CcCCHHHHh
Q 042171           40 ------DH--KINFIESEALSVLDQLLKDSENEVNFDYAFMDAD-KDNYCNYMR   84 (125)
Q Consensus        40 ------~~--~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~-~~~~~~~~~   84 (125)
                            ..  +++++.||+.+.++.+      ...||.+|+|+- ...+|+.|.
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~  185 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWS  185 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhcc
Confidence                  11  4567889999998876      356999999985 345665555

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.57  E-value=0.024  Score=44.19  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ...++|.-+|.|--|..|+++++ +|+|+++|             ..+..++++++++-.+....+...  ...++|.|+
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~--~~~~vDgIl   97 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL--LVTKIDGIL   97 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc--CCCcccEEE
Confidence            35789999999999999999998 49999999             234468999999998875444211  135799999


Q ss_pred             EcCCCcC
Q 042171           72 MDADKDN   78 (125)
Q Consensus        72 id~~~~~   78 (125)
                      .|-..++
T Consensus        98 ~DLGvSS  104 (305)
T TIGR00006        98 VDLGVSS  104 (305)
T ss_pred             EeccCCH
Confidence            9976544

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.50  E-value=0.024  Score=45.51  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------------CCCCCcEEEEecchHHHHHHHhhcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------------ARVDHKINFIESEALSVLDQLLKDS   61 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------------~~~~~~i~~~~gd~~~~l~~~~~~~   61 (125)
                      .+.++||-+|.|-|.....+.+. |.-.+|+-+|                     +=-+.|++++..|+.+++..-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            35789999999999999888874 4368899998                     112469999999999998754    


Q ss_pred             CCCCceeEEEEcCCCcCC
Q 042171           62 ENEVNFDYAFMDADKDNY   79 (125)
Q Consensus        62 ~~~~~fD~v~id~~~~~~   79 (125)
                        .+.||+|++|-..++.
T Consensus       363 --~~~fD~vIVDl~DP~t  378 (508)
T COG4262         363 --ADMFDVVIVDLPDPST  378 (508)
T ss_pred             --cccccEEEEeCCCCCC
Confidence              4689999999765544

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=96.45  E-value=0.022  Score=43.09  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhC---C-CCCEEEEEe-----------------------------------------CC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTI---P-EDGQITAID-----------------------------------------AR   38 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~---~-~~~~v~~iD-----------------------------------------~~   38 (125)
                      -|..|+|.||.-|.+++.|+..+   . ++-+++..|                                         .+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            36789999999999998775433   2 245799999                                         22


Q ss_pred             -CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh------hh--------CCCCCCcchHHHHHHHH
Q 042171           39 -VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR------EQ--------VPDHFRGSSKQAILDLN  103 (125)
Q Consensus        39 -~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~~  103 (125)
                       ..+++++++|...+++|...     ..++-++.+|++.  |.+-..      ..        +.++.-+.-.+++.+|.
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~  226 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR  226 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred             CCcccEEEECCcchhhhccCC-----CccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence             23689999999999988642     5789999999876  544333      11        12332223566777776


Q ss_pred             HHh
Q 042171          104 RSL  106 (125)
Q Consensus       104 ~~l  106 (125)
                      ++.
T Consensus       227 ~~~  229 (248)
T PF05711_consen  227 AEH  229 (248)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            653

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.43  E-value=0.014  Score=43.70  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------C--CCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            2 RLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------A--RVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         2 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~--~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.+..+||+||=|.|.....+-++-| . +=+-||           .  +-.++|.+++|.+++.++.+.     ++.||
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p-~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~-----d~~FD  171 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPP-D-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLP-----DKHFD  171 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCC-c-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccc-----ccCcc
Confidence            35788999999999999988877655 3 334455           2  234789999999999999884     56799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      -|+-|.-.+.|.+...
T Consensus       172 GI~yDTy~e~yEdl~~  187 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRH  187 (271)
T ss_pred             eeEeechhhHHHHHHH
Confidence            9999987766665544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.39  E-value=0.00051  Score=51.69  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      .+++||+|||||..+..+....   .+++++|         ..-...=++.++++...++..     ..++||+|..
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~-----~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDL-----TQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhc-----cCCcccchhh
Confidence            5799999999999998877653   5688999         111112345667777665533     2578999974

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.38  E-value=0.0097  Score=42.60  Aligned_cols=62  Identities=23%  Similarity=0.174  Sum_probs=43.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCC--------EEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDG--------QITAID---------------ARVDHKINFIESEALSVLDQLLKDS   61 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~--------~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~   61 (125)
                      ...+||--||+|...+..|.....-.        ++++.|               +++...|.+.+.|+.+. + +    
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~-~----  102 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P-L----  102 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G-G----
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c-c----
Confidence            45899999999999988776544222        499999               77878899999999877 3 2    


Q ss_pred             CCCCceeEEEEc
Q 042171           62 ENEVNFDYAFMD   73 (125)
Q Consensus        62 ~~~~~fD~v~id   73 (125)
                       ..+++|.|+.|
T Consensus       103 -~~~~~d~Ivtn  113 (179)
T PF01170_consen  103 -PDGSVDAIVTN  113 (179)
T ss_dssp             -TTSBSCEEEEE
T ss_pred             -ccCCCCEEEEC
Confidence             15789999974

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.38  E-value=0.0094  Score=44.39  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..++.||||-.+|.++++.+..+ ..++++.|               +++.++++...+|.+..+..       +..+|
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d   87 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID   87 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence            345699999999999999999877 68899999               67889999999999655431       45799


Q ss_pred             EEEEcCCCc-CCHHHHh
Q 042171           69 YAFMDADKD-NYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~-~~~~~~~   84 (125)
                      .+++.+=-. .-...++
T Consensus        88 ~ivIAGMGG~lI~~ILe  104 (226)
T COG2384          88 VIVIAGMGGTLIREILE  104 (226)
T ss_pred             EEEEeCCcHHHHHHHHH
Confidence            999865432 2345555

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.36  E-value=0.0073  Score=46.19  Aligned_cols=88  Identities=17%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCcccH----HHHHHHhhCCC----CCEEEEEe---------------------------------------
Q 042171            4 KLKKTIEIGVFTGY----SLFLTALTIPE----DGQITAID---------------------------------------   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~----~t~~la~~~~~----~~~v~~iD---------------------------------------   36 (125)
                      ++-+|.-+||+||-    .++.+.+..+.    .-+|+|.|                                       
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36799999999993    44555556653    46899999                                       


Q ss_pred             ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcC
Q 042171           37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDD  109 (125)
Q Consensus        37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (125)
                          ..+...|+|...|..+..+ .      .+.||+|||    +|..-||+       ++...+.++.|.+.|+..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfC----RNVLIYFd-------~~~q~~il~~f~~~L~~g  234 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFC----RNVLIYFD-------EETQERILRRFADSLKPG  234 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEE----cceEEeeC-------HHHHHHHHHHHHHHhCCC
Confidence                1123567888888776543 2      477999998    55555655       222455566666666543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.30  E-value=0.014  Score=46.26  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCC-CEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPED-GQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~-~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ..+|||.+++.|-=|..||..+++. +.|+++|               .|+. ++.++..|+........    ...+||
T Consensus       157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~----~~~~fD  231 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP----GGEKFD  231 (355)
T ss_pred             cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc----ccCcCc
Confidence            4699999999999999999999753 4569999               4553 47777777754422221    123699


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       232 ~iLlDaP  238 (355)
T COG0144         232 RILLDAP  238 (355)
T ss_pred             EEEECCC
Confidence            9999964

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.27  E-value=0.027  Score=48.30  Aligned_cols=99  Identities=14%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhh---CCC--------------------------------------CCEEEEEe-------
Q 042171            5 LKKTIEIGVFTGYSLFLTALT---IPE--------------------------------------DGQITAID-------   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~---~~~--------------------------------------~~~v~~iD-------   36 (125)
                      ...++|-+||+|...+..|..   .++                                      ..+++++|       
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            468999999999999887652   111                                      23799999       


Q ss_pred             --------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhc
Q 042171           37 --------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVD  108 (125)
Q Consensus        37 --------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (125)
                              +|+.++|++.++|+.+..+..     ..++||+|++      +|+|.+....+  . ......++|.+.++.
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~Ivt------NPPYg~r~~~~--~-~l~~lY~~lg~~lk~  336 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVIS------NPPYGERLGEE--P-ALIALYSQLGRRLKQ  336 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEE------CCCCcCccCch--H-HHHHHHHHHHHHHHH
Confidence                    688888999999998763211     1357999996      56665521110  1 123334555555543


Q ss_pred             -CCCeEEEEe
Q 042171          109 -DPCVQLSHV  117 (125)
Q Consensus       109 -~~~~~~~~l  117 (125)
                       .++++..++
T Consensus       337 ~~~g~~~~ll  346 (702)
T PRK11783        337 QFGGWNAALF  346 (702)
T ss_pred             hCCCCeEEEE
Confidence             355555444

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.24  E-value=0.022  Score=42.94  Aligned_cols=70  Identities=19%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC---------CCCCcEEEEecc-hHHHHHHHhhcCCCCCceeEEEE
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA---------RVDHKINFIESE-ALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~---------~~~~~i~~~~gd-~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      .+.+.+||||+.||-.|-++.+.=  ..+|+|+|.         ...+||...+.. +...-|.-.     .+..|++++
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-----~~~~d~~v~  150 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-----TEKPDLIVI  150 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-----ccCCCeEEE
Confidence            356789999999999999998851  368999992         234677776554 333322211     347899999


Q ss_pred             cCCCcCC
Q 042171           73 DADKDNY   79 (125)
Q Consensus        73 d~~~~~~   79 (125)
                      |.+.-+.
T Consensus       151 DvSFISL  157 (245)
T COG1189         151 DVSFISL  157 (245)
T ss_pred             EeehhhH
Confidence            9875443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.24  E-value=0.0015  Score=48.99  Aligned_cols=58  Identities=21%  Similarity=0.382  Sum_probs=41.2

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------------CCC----CCcEEEEecchHHHHHHHhhcCCC
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID-------------------ARV----DHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------------~~~----~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      +|||.-+|.|.=++.+|..   +++|+++|                   ...    ..||+++++|+.++|+ .     .
T Consensus        78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~-----~  148 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-Q-----P  148 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-C-----H
T ss_pred             EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-h-----c
Confidence            8999999999999999964   57999999                   111    2589999999999876 2     1


Q ss_pred             CCceeEEEEc
Q 042171           64 EVNFDYAFMD   73 (125)
Q Consensus        64 ~~~fD~v~id   73 (125)
                      ..+||+|++|
T Consensus       149 ~~s~DVVY~D  158 (234)
T PF04445_consen  149 DNSFDVVYFD  158 (234)
T ss_dssp             SS--SEEEE-
T ss_pred             CCCCCEEEEC
Confidence            5899999987

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PHA01634 hypothetical protein

Probab=95.95  E-value=0.011  Score=40.78  Aligned_cols=31  Identities=13%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +.++|+|||.+.|.|+++++..-  .-+|+++|
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E   58 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYE   58 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC--ccEEEEec
Confidence            56899999999999999999762  35799999

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=95.93  E-value=0.011  Score=43.49  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=42.0

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..+.|+|+|+|..+...|++   .-+|++||               .|+ .+++++.||+.+.  .+       +.-|.|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e~ADvv  100 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------ENADVV  100 (252)
T ss_pred             hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------ccccee
Confidence            35789999999999999988   35799999               223 6899999999876  22       446777


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      ++
T Consensus       101 ic  102 (252)
T COG4076         101 IC  102 (252)
T ss_pred             HH
Confidence            64

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.90  E-value=0.014  Score=44.11  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC----CC----EEEEEe----CCCCCcEEEEecchH------HHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE----DG----QITAID----ARVDHKINFIESEAL------SVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~----~~----~v~~iD----~~~~~~i~~~~gd~~------~~l~~~~~~~~~~~   65 (125)
                      ..++++|++...|.|+-.+++.+-.    .+    +|++||    +++ +-|..+++|..      .++..|.     .+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-~GV~qlq~DIT~~stae~Ii~hfg-----ge  114 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-EGVIQLQGDITSASTAEAIIEHFG-----GE  114 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-CceEEeecccCCHhHHHHHHHHhC-----CC
Confidence            3578999999999999999998632    22    399999    566 45666677654      3455552     46


Q ss_pred             ceeEEEEcCCCc-----CCHHHHh
Q 042171           66 NFDYAFMDADKD-----NYCNYMR   84 (125)
Q Consensus        66 ~fD~v~id~~~~-----~~~~~~~   84 (125)
                      +-|+|++|++..     ...+|++
T Consensus       115 kAdlVvcDGAPDvTGlHd~DEy~Q  138 (294)
T KOG1099|consen  115 KADLVVCDGAPDVTGLHDLDEYVQ  138 (294)
T ss_pred             CccEEEeCCCCCccccccHHHHHH
Confidence            899999998854     3456666

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.85  E-value=0.013  Score=43.22  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +|||||||||--+.++|+++| .-+-...|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD   56 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSD   56 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCC
Confidence            599999999999999999998 45555555

The function of this family is unknown.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.80  E-value=0.014  Score=45.35  Aligned_cols=69  Identities=13%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEecchH-HHHHHHhhcCCCCCcee
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIESEAL-SVLDQLLKDSENEVNFD   68 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~gd~~-~~l~~~~~~~~~~~~fD   68 (125)
                      -++||||||.-+.=..|+.+.. +=+++|.|               . .+.++|+++..... .+++.+..   ..+.||
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d  179 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD  179 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence            4789999977655433444443 57999999               3 78899999865433 23333321   246899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      |.++      +|++++
T Consensus       180 ftmC------NPPFy~  189 (299)
T PF05971_consen  180 FTMC------NPPFYS  189 (299)
T ss_dssp             EEEE-----------S
T ss_pred             EEec------CCcccc
Confidence            9997      666666

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.80  E-value=0.043  Score=43.40  Aligned_cols=64  Identities=20%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ....|||.=+|.|+.|+.+|+.-.  .+|+|+|               .++..+|+.++||+.+..+.+       ..+|
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD  258 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD  258 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence            467899999999999999999743  3399999               567778999999999997753       7899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      -|++..-+
T Consensus       259 rIim~~p~  266 (341)
T COG2520         259 RIIMGLPK  266 (341)
T ss_pred             EEEeCCCC
Confidence            99997665

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.68  E-value=0.062  Score=41.02  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..++||||+|.|-.|..|+....   +|++.|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE  123 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATE  123 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeec
Confidence            567899999999999999999875   399999

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.64  E-value=0.016  Score=44.25  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      .+|++|||+|+|+|..+.......+.-.+++++|
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd   65 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVD   65 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeec
Confidence            4789999999999987777766677456799999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.64  E-value=0.031  Score=47.38  Aligned_cols=76  Identities=16%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEecchH-H----HHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIESEAL-S----VLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~gd~~-~----~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ++..|||+||.+|.|.-..++.+|.++-|+++|    -++..-+++++ |.. +    .+....    ...+.|+|+.|+
T Consensus        44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~-dIttd~cr~~l~k~l----~t~~advVLhDg  118 (780)
T KOG1098|consen   44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVE-DITTDECRSKLRKIL----KTWKADVVLHDG  118 (780)
T ss_pred             ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhh-hhhHHHHHHHHHHHH----HhCCCcEEeecC
Confidence            456789999999999999999999889999999    33333334333 332 2    222222    247789999999


Q ss_pred             CCcCCHHHHh
Q 042171           75 DKDNYCNYMR   84 (125)
Q Consensus        75 ~~~~~~~~~~   84 (125)
                      ++.--..|..
T Consensus       119 apnVg~~w~~  128 (780)
T KOG1098|consen  119 APNVGGNWVQ  128 (780)
T ss_pred             CCccchhHHH
Confidence            9865444444

>PRK00536 speE spermidine synthase; Provisional

Probab=95.60  E-value=0.06  Score=41.08  Aligned_cols=60  Identities=8%  Similarity=0.057  Sum_probs=44.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||-||.|-|..+..+++. +  .+|+-+|                 .++ .+|++++..    . ...     ..
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~-----~~  137 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL-----DI  137 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc-----cC
Confidence            46899999999999999999987 3  3898888                 122 368888861    1 111     13


Q ss_pred             CceeEEEEcCC
Q 042171           65 VNFDYAFMDAD   75 (125)
Q Consensus        65 ~~fD~v~id~~   75 (125)
                      ++||+|++|..
T Consensus       138 ~~fDVIIvDs~  148 (262)
T PRK00536        138 KKYDLIICLQE  148 (262)
T ss_pred             CcCCEEEEcCC
Confidence            68999999964

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.52  E-value=0.055  Score=39.89  Aligned_cols=73  Identities=26%  Similarity=0.310  Sum_probs=51.8

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe---------CCCCCcEEEEecchHHH-----HHHHhhcCCCC
Q 042171            2 RLKLKKTIEIGVFTGYSLFLTALTI---PEDGQITAID---------ARVDHKINFIESEALSV-----LDQLLKDSENE   64 (125)
Q Consensus         2 ~~~~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD---------~~~~~~i~~~~gd~~~~-----l~~~~~~~~~~   64 (125)
                      ..+|..|+|+|+-.|-|+++.|.-+   +...+|+++|         +.-.++|.|++|+..+.     ...+ ++   .
T Consensus        67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~-~~---~  142 (237)
T COG3510          67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL-KN---E  142 (237)
T ss_pred             hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH-hc---C
Confidence            4689999999999999999988743   3346899999         11136899999988752     1222 11   2


Q ss_pred             CceeEEEEcCCCcC
Q 042171           65 VNFDYAFMDADKDN   78 (125)
Q Consensus        65 ~~fD~v~id~~~~~   78 (125)
                      .+-=||++|+++..
T Consensus       143 y~kIfvilDsdHs~  156 (237)
T COG3510         143 YPKIFVILDSDHSM  156 (237)
T ss_pred             CCcEEEEecCCchH
Confidence            34457788988764

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.46  E-value=0.044  Score=40.98  Aligned_cols=76  Identities=17%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+||=+|.++|..--.++.-++++|.|+++|            +.-..||--+.+|+..-. ...   .--+..|+||.
T Consensus        74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~---~lv~~VDvI~~  149 (229)
T PF01269_consen   74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYR---MLVEMVDVIFQ  149 (229)
T ss_dssp             T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGT---TTS--EEEEEE
T ss_pred             CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-Hhh---cccccccEEEe
Confidence            46999999999999999999998899999999            223467888888887421 111   11468999999


Q ss_pred             cCCCcCCHHHHh
Q 042171           73 DADKDNYCNYMR   84 (125)
Q Consensus        73 d~~~~~~~~~~~   84 (125)
                      |-+.+.-.+.+-
T Consensus       150 DVaQp~Qa~I~~  161 (229)
T PF01269_consen  150 DVAQPDQARIAA  161 (229)
T ss_dssp             E-SSTTHHHHHH
T ss_pred             cCCChHHHHHHH
Confidence            999877655555

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.42  E-value=0.013  Score=43.49  Aligned_cols=51  Identities=22%  Similarity=0.270  Sum_probs=43.1

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------------CCCCCcEEEEecchHHHHHHH
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------------ARVDHKINFIESEALSVLDQL   57 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------------~~~~~~i~~~~gd~~~~l~~~   57 (125)
                      -.+.|||||.|-..+.++...| +.-|.+.|                     .+.-.++.+...++.-.+|++
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~  133 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF  133 (249)
T ss_pred             ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence            3579999999999999999998 78899999                     233467889999999888875

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.30  E-value=0.033  Score=45.68  Aligned_cols=45  Identities=22%  Similarity=0.281  Sum_probs=35.7

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHH
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS   52 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~   52 (125)
                      ..|||||||||..++..+++..  -.|+++|               .|+.++|+++.-...+
T Consensus        68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            3689999999999999888753  4599999               6788888887654443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.86  E-value=0.12  Score=40.18  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +|-+||||.||.|---+-.....|. .-.|.-.|               .|+.+.++|.++||.+.- .+..   -....
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~---l~p~P  210 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA---LDPAP  210 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc---cCCCC
Confidence            6779999999999999988888874 35788888               678777899999999852 2221   13457


Q ss_pred             eEEEEcCCCcCCH
Q 042171           68 DYAFMDADKDNYC   80 (125)
Q Consensus        68 D~v~id~~~~~~~   80 (125)
                      +++++.+-.+.++
T Consensus       211 ~l~iVsGL~ElF~  223 (311)
T PF12147_consen  211 TLAIVSGLYELFP  223 (311)
T ss_pred             CEEEEecchhhCC
Confidence            9999877655444

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.70  E-value=0.019  Score=41.92  Aligned_cols=70  Identities=23%  Similarity=0.251  Sum_probs=39.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhC----C----CCCEEEEEe---------------------------------------
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTI----P----EDGQITAID---------------------------------------   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~----~----~~~~v~~iD---------------------------------------   36 (125)
                      ++-+|.-.||+||-=+-.||-.+    +    .+-+|+|.|                                       
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999995443333222    1    135899999                                       


Q ss_pred             ---CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171           37 ---ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        37 ---~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~   84 (125)
                         ..+.++|+|...|..+..+.       .+.||+||+    +|..-||+
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~C----RNVlIYF~  150 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFC----RNVLIYFD  150 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-----SSGGGS-
T ss_pred             eEChHHcCceEEEecccCCCCcc-------cCCccEEEe----cCEEEEeC
Confidence               01236899999999882222       478999998    66666776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.59  E-value=0.074  Score=40.32  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||+|+|+|.-++.+|...  .++++.-|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD  116 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTD  116 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCC
Confidence            35689999999999999988865  47777777

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.45  E-value=0.045  Score=45.23  Aligned_cols=32  Identities=19%  Similarity=-0.018  Sum_probs=26.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-------CCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-------DGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-------~~~v~~iD   36 (125)
                      ..+|||.|||+|...+.+++.++.       .-.++++|
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~D   70 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFAD   70 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeec
Confidence            458999999999999999987742       14578888

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.28  E-value=0.041  Score=40.56  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +.++|||+|+|+|.-++..+++-  ...|++.|             .-..-.|.+...|....          ...||++
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~----------~~~~Dl~  146 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS----------PPAFDLL  146 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC----------CcceeEE
Confidence            56899999999999999988873  35677777             11123466776666431          4679999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      +..
T Consensus       147 Lag  149 (218)
T COG3897         147 LAG  149 (218)
T ss_pred             Eee
Confidence            874

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.23  E-value=0.067  Score=43.46  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..||||.++.+|-=|.+||.-+...|.|+|.|               .|+ .+..+...|..+. |.  +..  ..+||-
T Consensus       242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef-~~--~~~--~~~fDR  315 (460)
T KOG1122|consen  242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREF-PE--KEF--PGSFDR  315 (460)
T ss_pred             CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccc-cc--ccc--Ccccce
Confidence            45999999999999999999999889999999               344 3444555666543 21  000  237999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++||.
T Consensus       316 VLLDAP  321 (460)
T KOG1122|consen  316 VLLDAP  321 (460)
T ss_pred             eeecCC
Confidence            999975

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.22  E-value=0.16  Score=37.36  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------------CCC-CCcEEEEecchHHH--HHHHhhc
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------------ARV-DHKINFIESEALSV--LDQLLKD   60 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------------~~~-~~~i~~~~gd~~~~--l~~~~~~   60 (125)
                      ...+|||||.|-..++.|...+ -.+.++||                      .+. ..++++.+||..+.  ...+   
T Consensus        44 dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~---  119 (205)
T PF08123_consen   44 DVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI---  119 (205)
T ss_dssp             -EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH---
T ss_pred             CEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh---
Confidence            4679999999999999887764 45699999                      232 35789999998753  2222   


Q ss_pred             CCCCCceeEEEEcCC
Q 042171           61 SENEVNFDYAFMDAD   75 (125)
Q Consensus        61 ~~~~~~fD~v~id~~   75 (125)
                         -..-|+||++..
T Consensus       120 ---~s~AdvVf~Nn~  131 (205)
T PF08123_consen  120 ---WSDADVVFVNNT  131 (205)
T ss_dssp             ---GHC-SEEEE--T
T ss_pred             ---hcCCCEEEEecc
Confidence               134799998543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=94.12  E-value=0.039  Score=42.32  Aligned_cols=64  Identities=20%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC------CCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI------PEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~------~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      ..+|+|-+||+|...+.+.+.+      ....+++++|               .+... ...+..+|.... +...    
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~-~~~~----  121 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN-DKFI----  121 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS-HSCT----
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc-cccc----
Confidence            4579999999999999988754      1268899999               23222 346888887754 2210    


Q ss_pred             CCCceeEEEEc
Q 042171           63 NEVNFDYAFMD   73 (125)
Q Consensus        63 ~~~~fD~v~id   73 (125)
                      ....||+|+.+
T Consensus       122 ~~~~~D~ii~N  132 (311)
T PF02384_consen  122 KNQKFDVIIGN  132 (311)
T ss_dssp             ST--EEEEEEE
T ss_pred             cccccccccCC
Confidence            13689999974

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.06  E-value=0.38  Score=37.62  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ...++|.--|.|--|..+++++++ ++|+++|             ....+|+.+++++-.+....+... .....+|.|+
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL   98 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL-NGINKVDGIL   98 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT-TTTS-EEEEE
T ss_pred             CceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc-cCCCccCEEE
Confidence            447799888999999999999995 9999999             345689999999987764444321 1236899999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +|-..+.+
T Consensus        99 ~DLGvSS~  106 (310)
T PF01795_consen   99 FDLGVSSM  106 (310)
T ss_dssp             EE-S--HH
T ss_pred             EccccCHH
Confidence            99876543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.28  Score=36.45  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHH--HHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVL--DQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l--~~~~~~~~~~~~fD~   69 (125)
                      +..+||=+|..+|...-.++.-++ +|.++++|            +.-..|+--+.+||..-.  ..+      -+..|+
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~------Ve~VDv  148 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL------VEKVDV  148 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhh------cccccE
Confidence            456999999999999999999998 89999999            222456777888886421  222      367999


Q ss_pred             EEEcCCCcCCHHHHhhh
Q 042171           70 AFMDADKDNYCNYMREQ   86 (125)
Q Consensus        70 v~id~~~~~~~~~~~~~   86 (125)
                      ||.|-+.++-.+.+..|
T Consensus       149 iy~DVAQp~Qa~I~~~N  165 (231)
T COG1889         149 IYQDVAQPNQAEILADN  165 (231)
T ss_pred             EEEecCCchHHHHHHHH
Confidence            99999998877766644

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.78  E-value=0.033  Score=45.97  Aligned_cols=62  Identities=8%  Similarity=0.030  Sum_probs=37.8

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--CCCCCcEEEEecch---------HHHHHHHhhcCCCCCceeEEEEcC
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--ARVDHKINFIESEA---------LSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--~~~~~~i~~~~gd~---------~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +.+||||||+|.++..|.+.   +-..+++-  .....+++|...-.         ..-||.      .++.||+|.+..
T Consensus       119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf------p~~~fDmvHcsr  189 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF------PSNAFDMVHCSR  189 (506)
T ss_pred             EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC------Cccchhhhhccc
Confidence            46799999999999998876   44455554  12223344432111         112332      368999999865


Q ss_pred             CC
Q 042171           75 DK   76 (125)
Q Consensus        75 ~~   76 (125)
                      +.
T Consensus       190 c~  191 (506)
T PF03141_consen  190 CL  191 (506)
T ss_pred             cc
Confidence            43

; GO: 0008168 methyltransferase activity

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.50  E-value=0.035  Score=42.08  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-DGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD   36 (125)
                      +.+|||||||.|-+..-+.+..++ +-+|+++|
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acD  104 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACD  104 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcC
Confidence            347999999999999999988763 37899999

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=93.40  E-value=0.31  Score=38.39  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCcccH-HHHHHHhhCCCCCEEEEEe------------C-----C-------CCCcEEEEecchHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGY-SLFLTALTIPEDGQITAID------------A-----R-------VDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         4 ~~~~vLeiG~g~G~-~t~~la~~~~~~~~v~~iD------------~-----~-------~~~~i~~~~gd~~~~l~~~~   58 (125)
                      +..+|||+|||-|- ..-|....   -.+++++|            .     +       ..-...++.+|+...  .+.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--~l~  136 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK---IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--SLR  136 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--HHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--hhh
Confidence            46799999999555 55565432   47899999            1     1       123567788888642  111


Q ss_pred             hcCCC-CCceeEEEEc
Q 042171           59 KDSEN-EVNFDYAFMD   73 (125)
Q Consensus        59 ~~~~~-~~~fD~v~id   73 (125)
                      ....+ ..+||+|-+=
T Consensus       137 ~~~~~~~~~FDvVScQ  152 (331)
T PF03291_consen  137 EKLPPRSRKFDVVSCQ  152 (331)
T ss_dssp             CTSSSTTS-EEEEEEE
T ss_pred             hhccccCCCcceeehH
Confidence            11111 2589999863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.94  E-value=1.5  Score=34.40  Aligned_cols=72  Identities=14%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ...+|.--|-|--+-.+.+.+++.++++++|             ..+.+|+++++++-.+....+...  ....+|-|+.
T Consensus        25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~--~i~~vDGiL~  102 (314)
T COG0275          25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKEL--GIGKVDGILL  102 (314)
T ss_pred             cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhc--CCCceeEEEE
Confidence            4668887888888999999998889999999             445689999999887664433221  2468999999


Q ss_pred             cCCCcCC
Q 042171           73 DADKDNY   79 (125)
Q Consensus        73 d~~~~~~   79 (125)
                      |-..+++
T Consensus       103 DLGVSS~  109 (314)
T COG0275         103 DLGVSSP  109 (314)
T ss_pred             eccCCcc
Confidence            9776554

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=92.75  E-value=0.67  Score=36.29  Aligned_cols=109  Identities=15%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV-DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +|++||-||-|-|-...--++. +.=+.+.-+|                 .+. .++|.++.||....+...     +.+
T Consensus       121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----~~~  194 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----KEN  194 (337)
T ss_pred             CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----ccC
Confidence            6889999999988877666665 4335555555                 333 368999999999988765     268


Q ss_pred             ceeEEEEcCCCcCCH-------HHHhhh---C---------CCC---CCcchHHHHHHHHHHhhcCCCeEEEEeec
Q 042171           66 NFDYAFMDADKDNYC-------NYMREQ---V---------PDH---FRGSSKQAILDLNRSLVDDPCVQLSHVAL  119 (125)
Q Consensus        66 ~fD~v~id~~~~~~~-------~~~~~~---~---------~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  119 (125)
                      +||.|+.|.+..--+       +|++..   .         .+.   ... ..+.+++|-..+..--.+-.+..|+
T Consensus       195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~-~i~e~r~~~~~~f~~t~ya~ttvPT  269 (337)
T KOG1562|consen  195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLD-YIKEGRSFCYVIFDLTAYAITTVPT  269 (337)
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHH-HHHHHHHhHHHhcCccceeeecCCC
Confidence            999999998765432       344421   1         111   111 4555777777787777788888775

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=92.18  E-value=0.52  Score=35.12  Aligned_cols=63  Identities=11%  Similarity=0.113  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+.||.|+|.|-.|--+...+  --+|..+|             . +.....++...-.+++-|.       ..+||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~-------~~~YDl  125 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE-------EGKYDL  125 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------TT-EEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC-------CCcEeE
Confidence            45689999999999998765433  35788888             1 1223466777777777664       478999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++--.
T Consensus       126 IW~QW~  131 (218)
T PF05891_consen  126 IWIQWC  131 (218)
T ss_dssp             EEEES-
T ss_pred             EEehHh
Confidence            998544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=92.07  E-value=0.25  Score=37.55  Aligned_cols=60  Identities=15%  Similarity=0.011  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .|.+|+|||||.=-.++...... ++..++++|             .-+..+.++...|.....|        ..+.|+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~--------~~~~Dla  175 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP--------KEPADLA  175 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT--------TSEESEE
T ss_pred             CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC--------CCCcchh
Confidence            37899999999888887655433 368999999             1233345555556654422        4678888


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      ++
T Consensus       176 Ll  177 (251)
T PF07091_consen  176 LL  177 (251)
T ss_dssp             EE
T ss_pred             hH
Confidence            85

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=91.75  E-value=0.28  Score=33.30  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=26.7

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC-CcCCHHHHh
Q 042171           41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD-KDNYCNYMR   84 (125)
Q Consensus        41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~-~~~~~~~~~   84 (125)
                      -++++..||+.+.++.+      ...||.+|.|+- ...+|+.+.
T Consensus        31 v~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs   69 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWS   69 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSS
T ss_pred             EEEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCC
Confidence            46889999999999987      478999999974 455665544

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.64  E-value=0.43  Score=38.33  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCC-------------------------------CC-------EEEEEe-----------
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPE-------------------------------DG-------QITAID-----------   36 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~-------------------------------~~-------~v~~iD-----------   36 (125)
                      ..++|-=||+|...+-.|...++                               .+       .++++|           
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            46788899999999987765431                               11       378999           


Q ss_pred             ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171           37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus        37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                          +|+.+.|+|.++|+...-+.       -+.+|+|++
T Consensus       273 NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~  305 (381)
T COG0116         273 NARAAGVGDLIEFKQADATDLKEP-------LEEYGVVIS  305 (381)
T ss_pred             HHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEe
Confidence                89999999999999866221       268999996

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=89.84  E-value=0.62  Score=29.27  Aligned_cols=58  Identities=26%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             EEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC--CCc--EEEEecchHHH-HHHHhhcCCCC-CceeEEE
Q 042171            8 TIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV--DHK--INFIESEALSV-LDQLLKDSENE-VNFDYAF   71 (125)
Q Consensus         8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~--~~~--i~~~~gd~~~~-l~~~~~~~~~~-~~fD~v~   71 (125)
                      ++|+|||+|..+ .++...+....++++|          ...  ...  +.+..++.... ++..      . ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE------DSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCC------CCCceeEEe
Confidence            999999999988 4454443224888899          000  111  57777777652 3321      2 3799994


Q ss_pred             E
Q 042171           72 M   72 (125)
Q Consensus        72 i   72 (125)
                      .
T Consensus       125 ~  125 (257)
T COG0500         125 S  125 (257)
T ss_pred             e
Confidence            3

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=89.59  E-value=1.7  Score=30.70  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +.-|||+|-|-|-.==.|.+.+| +-+|+.+|       +-..+.-.++.||+.++++.+..-   ..+.-++..|-..
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~---g~~a~laHaD~G~  103 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARF---GAGAALAHADIGT  103 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH----S-EEEEEE----
T ss_pred             CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhc---CCceEEEEeecCC
Confidence            46799999999999889999998 79999999       222344568999999998873211   3567777777554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=89.45  E-value=1.4  Score=35.39  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=50.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +-+|||.=+|+|.=++..++.++...+|++-|               .++.+ ++++.+.|+...+..      ....||
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD  123 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFD  123 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCC
Confidence            44899999999999999999986557899999               56666 799999999987642      157899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|=+|.-- ...+|++
T Consensus       124 ~IDlDPfG-Sp~pfld  138 (377)
T PF02005_consen  124 VIDLDPFG-SPAPFLD  138 (377)
T ss_dssp             EEEE--SS---HHHHH
T ss_pred             EEEeCCCC-CccHhHH
Confidence            99998654 3345555

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=88.62  E-value=1.1  Score=28.12  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             CCCCEEEEEcCcccHHHH-HHHhhCCCCCEEEEE
Q 042171            3 LKLKKTIEIGVFTGYSLF-LTALTIPEDGQITAI   35 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~-~la~~~~~~~~v~~i   35 (125)
                      ..|++||-||+.+||-.. .++.++.-++.-++|
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV   70 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV   70 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence            468999999999999654 355555545555444

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.59  E-value=1.1  Score=34.05  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC----CCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP----EDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~----~~~~v~~iD   36 (125)
                      +...++|.|||.|..+.|++..++    +...++.||
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lID   54 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLID   54 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEe
Confidence            345789999999999999999985    247899999

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.49  E-value=0.16  Score=36.59  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +.++|||+|.| +|.+++.+|...+ ...|.-.|
T Consensus        29 rg~~ilelgggft~laglmia~~a~-~~~v~ltd   61 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAP-DSSVWLTD   61 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecC-CceEEEec
Confidence            45789999976 6888888888887 67888888

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=87.23  E-value=0.58  Score=36.18  Aligned_cols=32  Identities=19%  Similarity=0.043  Sum_probs=21.3

Q ss_pred             CCEEEEEcCcccHHHHH----HHhhCC---CCCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFL----TALTIP---EDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~----la~~~~---~~~~v~~iD   36 (125)
                      +-+|.-.||+||-=+-.    +.+..+   .+-+|+|+|
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atD  154 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASD  154 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence            45899999999954333    333332   135799999

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=86.24  E-value=1.1  Score=34.34  Aligned_cols=73  Identities=16%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ...+||=+|+++|.+--..+..+.+++-|+++|            +.-..+|.-+..|+.---.    ...--.-.|.||
T Consensus       156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~K----YRmlVgmVDvIF  231 (317)
T KOG1596|consen  156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAK----YRMLVGMVDVIF  231 (317)
T ss_pred             CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchh----eeeeeeeEEEEe
Confidence            346899999999999999999998899999999            2233556556667653211    001135689999


Q ss_pred             EcCCCcCCH
Q 042171           72 MDADKDNYC   80 (125)
Q Consensus        72 id~~~~~~~   80 (125)
                      .|-+++...
T Consensus       232 aDvaqpdq~  240 (317)
T KOG1596|consen  232 ADVAQPDQA  240 (317)
T ss_pred             ccCCCchhh
Confidence            998876543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=85.55  E-value=1.9  Score=33.14  Aligned_cols=30  Identities=10%  Similarity=-0.041  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+||--|||.|-.+.-+|+.   +-.+.+.|
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE   85 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNE   85 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc---cceEEEEE
Confidence            4569999999999999999987   67899999

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=84.27  E-value=2.9  Score=33.35  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------------CCCCCcEEEEecchHHH-HHHHhhc
Q 042171            2 RLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------------ARVDHKINFIESEALSV-LDQLLKD   60 (125)
Q Consensus         2 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------------~~~~~~i~~~~gd~~~~-l~~~~~~   60 (125)
                      +.+...++++|||-|--.+-.-++-  -++++++|                    ..+.-.+.|+.+|+... |-.+.. 
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-  191 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-  191 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-
Confidence            4456788999999888777666542  37899999                    11223578899998753 222211 


Q ss_pred             CCCCCceeEEEEcCC
Q 042171           61 SENEVNFDYAFMDAD   75 (125)
Q Consensus        61 ~~~~~~fD~v~id~~   75 (125)
                       .++.+||+|-+-.+
T Consensus       192 -~~dp~fDivScQF~  205 (389)
T KOG1975|consen  192 -FKDPRFDIVSCQFA  205 (389)
T ss_pred             -CCCCCcceeeeeee
Confidence             12344999987444

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=84.00  E-value=3.5  Score=30.75  Aligned_cols=95  Identities=14%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC--CcCCHHH
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD--KDNYCNY   82 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~--~~~~~~~   82 (125)
                      ..|-|+|||-+-.+    ++++..-+|.+.| ....++|  +..|.... |.      ++++.|+++.--+  ..+|+.|
T Consensus        74 ~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n~~V--tacdia~v-PL------~~~svDv~VfcLSLMGTn~~~f  140 (219)
T PF05148_consen   74 LVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPNPRV--TACDIANV-PL------EDESVDVAVFCLSLMGTNWPDF  140 (219)
T ss_dssp             S-EEEES-TT-HHH----HH--S---EEEEESS-SSTTE--EES-TTS--S--------TT-EEEEEEES---SS-HHHH
T ss_pred             EEEEECCCchHHHH----HhcccCceEEEeeccCCCCCE--EEecCccC-cC------CCCceeEEEEEhhhhCCCcHHH
Confidence            47899999998766    5565456899999 3333454  44777544 53      2688999987544  3467777


Q ss_pred             Hhhh---C-C------CCCCcchHHHHHHHHHHhhcCCCeEEE
Q 042171           83 MREQ---V-P------DHFRGSSKQAILDLNRSLVDDPCVQLS  115 (125)
Q Consensus        83 ~~~~---~-~------~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (125)
                      +++.   + +      ...+ +....+++|.+.+..- +|+..
T Consensus       141 i~EA~RvLK~~G~L~IAEV~-SRf~~~~~F~~~~~~~-GF~~~  181 (219)
T PF05148_consen  141 IREANRVLKPGGILKIAEVK-SRFENVKQFIKALKKL-GFKLK  181 (219)
T ss_dssp             HHHHHHHEEEEEEEEEEEEG-GG-S-HHHHHHHHHCT-TEEEE
T ss_pred             HHHHHheeccCcEEEEEEec-ccCcCHHHHHHHHHHC-CCeEE
Confidence            7743   1 1      0112 2444578888888654 55443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=83.30  E-value=1.8  Score=35.23  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ....|+|+|.|.|+.+..|+...  +-.|++||
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIe  183 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIE  183 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc--CceEEEec
Confidence            45689999999999999999876  58899999

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=83.23  E-value=9.9  Score=29.85  Aligned_cols=76  Identities=11%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC---CCEEEEEe----------CCCC----CcEEE--EecchHHHHHHHhhcCCCCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE---DGQITAID----------ARVD----HKINF--IESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~---~~~v~~iD----------~~~~----~~i~~--~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ...++|+|||.|.=+..|.+++.+   ..+.+++|          ..+.    +.+++  +.||-.+.+..+.+......
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~  156 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR  156 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence            347999999999999888888742   35789999          1222    34555  78888776543321000122


Q ss_pred             ceeEEEEcCCCcCCH
Q 042171           66 NFDYAFMDADKDNYC   80 (125)
Q Consensus        66 ~fD~v~id~~~~~~~   80 (125)
                      +--+.|....-.|+.
T Consensus       157 ~r~~~flGSsiGNf~  171 (319)
T TIGR03439       157 PTTILWLGSSIGNFS  171 (319)
T ss_pred             ccEEEEeCccccCCC
Confidence            334445555555554

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=82.53  E-value=0.86  Score=36.73  Aligned_cols=21  Identities=10%  Similarity=0.086  Sum_probs=16.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGYSLFLTAL   24 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~   24 (125)
                      ++-+|+|+|||+|..|+.+..
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs   83 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIID   83 (386)
T ss_pred             cceeEEEecCCCCccHHHHHH
Confidence            356899999999999876543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=81.65  E-value=2.3  Score=28.65  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=18.0

Q ss_pred             EEcCccc--HHHHHHHh-hCCCCCEEEEEe
Q 042171           10 EIGVFTG--YSLFLTAL-TIPEDGQITAID   36 (125)
Q Consensus        10 eiG~g~G--~~t~~la~-~~~~~~~v~~iD   36 (125)
                      |||+..|  .++.++++ ...++++|+++|
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~E   30 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFE   30 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE-
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEE
Confidence            7999999  77776653 455579999999

; PDB: 2PY6_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=81.54  E-value=4.2  Score=32.43  Aligned_cols=68  Identities=22%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             EEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEE
Q 042171            8 TIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYA   70 (125)
Q Consensus         8 vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v   70 (125)
                      -+|||+  |.+.++-+.... .+-..+++|               .++.+++.+++-+.... ++...+. ..+..|||+
T Consensus       106 GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFc  182 (419)
T KOG2912|consen  106 GIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFC  182 (419)
T ss_pred             eeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEE
Confidence            367776  677776655442 234566666               45667888888766553 2221111 123569999


Q ss_pred             EEcCCCcCCHHHHh
Q 042171           71 FMDADKDNYCNYMR   84 (125)
Q Consensus        71 ~id~~~~~~~~~~~   84 (125)
                      .+      +|++|+
T Consensus       183 Mc------NPPFfe  190 (419)
T KOG2912|consen  183 MC------NPPFFE  190 (419)
T ss_pred             ec------CCchhh
Confidence            85      677776

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=81.18  E-value=4  Score=31.52  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CEEEEEcCcc----cHHHHHHHhhCCCCCEEEEEe--CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            6 KKTIEIGVFT----GYSLFLTALTIPEDGQITAID--ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         6 ~~vLeiG~g~----G~~t~~la~~~~~~~~v~~iD--~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      .+||-+|.|+    .--+.-|.+-+|+++.++-.|  .-+.+.-..+.+|.....+        +..||+||+|.-
T Consensus        63 MrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~--------~~k~DlIiSDmY  130 (299)
T PF06460_consen   63 MRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP--------PDKFDLIISDMY  130 (299)
T ss_dssp             -EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE--------SS-EEEEEE---
T ss_pred             cEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC--------CCcccEEEEecc
Confidence            4899999764    335667788889888999999  2234455678899986633        578999999854

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=81.13  E-value=1.7  Score=36.05  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=53.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCC--CcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVD--HKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~--~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...+|-||-|.|....++-..+| ..+++++|            .++.  .|..++..|+.+.+..+.+...+..-||++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            45678888888999999888888 79999999            2332  357788888988877776542235679999


Q ss_pred             EEcCCCc
Q 042171           71 FMDADKD   77 (125)
Q Consensus        71 ~id~~~~   77 (125)
                      +.|.+-.
T Consensus       375 ~~dvds~  381 (482)
T KOG2352|consen  375 MVDVDSK  381 (482)
T ss_pred             EEECCCC
Confidence            9986643

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=80.81  E-value=5.5  Score=29.95  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=36.1

Q ss_pred             cccHHHHHHHhh--C-CCCCEEEEEe-----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171           14 FTGYSLFLTALT--I-PEDGQITAID-----------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus        14 g~G~~t~~la~~--~-~~~~~v~~iD-----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      |.|-+|..++.+  + ..+.+|.-||                 ..+.+++.+...+-...+....... ....||||++|
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a-~~~~~d~VlvD   90 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAA-EASGFDFVLVD   90 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHH-HhcCCCEEEEe
Confidence            667777765553  3 2478999999                 1234566666655443433321100 12459999999


Q ss_pred             CCC
Q 042171           74 ADK   76 (125)
Q Consensus        74 ~~~   76 (125)
                      ...
T Consensus        91 leG   93 (231)
T PF07015_consen   91 LEG   93 (231)
T ss_pred             CCC
Confidence            754

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=80.27  E-value=2.1  Score=32.75  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCC---cEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDH---KINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~---~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ...++||||+-|+....+...-  -.+++-+|         .+.++   .+....+|-+ .|+ +     .++++|+|+.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE-~Ld-f-----~ens~DLiis  143 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEE-FLD-F-----KENSVDLIIS  143 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchh-ccc-c-----cccchhhhhh
Confidence            3568999999999988776542  36788888         22221   2444566654 445 4     2689999997


Q ss_pred             cCC---CcCCHHHHh
Q 042171           73 DAD---KDNYCNYMR   84 (125)
Q Consensus        73 d~~---~~~~~~~~~   84 (125)
                      .-.   ....|.++.
T Consensus       144 SlslHW~NdLPg~m~  158 (325)
T KOG2940|consen  144 SLSLHWTNDLPGSMI  158 (325)
T ss_pred             hhhhhhhccCchHHH
Confidence            643   334455554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		3e-27
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		7e-23
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		9e-12
3cbg_A	232	Functional And Structural Characterization Of A Cat		1e-10
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		6e-08
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-07
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		6e-07
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		8e-05

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 43/160 (26%)
Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTAL+IP+DG+ITAID               A V+HKINFIES+A
Sbjct: 72  KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA 131
Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE------------------------- 85
           +  LD LL+  E+E ++D+ F+DADK NY  Y                            
Sbjct: 132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQP 191
Query: 86  --QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123
             +VPD F   +++A+++LN+ L  DP +++ H+ LG+ +
Sbjct: 192 ESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 45/170 (26%)
Query: 1   MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
           M LKL   K T+EIGV+TGYSL  TAL IPEDG+I A+D               A VDHK
Sbjct: 73  MLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHK 132
Query: 43  INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
           I+F E  AL VLD+++KD +N  ++D+ F+DADKDNY NY +  +               
Sbjct: 133 IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL 192
Query: 88  --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
                   PD     +    +  +L+LN++L  DP +++  + +G+ + I
Sbjct: 193 WNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITI 242

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 4   KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES 48
           + KK +E+G FTGYS    +L +P+DGQ+   D               A+ +HKI     
Sbjct: 60  RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119
Query: 49  EALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
            AL  L  LL +   E  FD+ F+DADK NY NY
Sbjct: 120 PALDTLHSLLNEG-GEHQFDFIFIDADKTNYLNY 152

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 37/156 (23%)
Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K+ +EIGVF GYS    AL +P DGQI A D               A V  KI+     A
Sbjct: 74  KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRG----------------- 93
           L+ L+QL +  +    FD  F+DADK NY  Y    +    RG                 
Sbjct: 134 LATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEV 192
Query: 94  ----SSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
               +  Q +   NR L  D  V++S + LG+ + +
Sbjct: 193 DPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTL 228

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 3   LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
           ++ KK +++G FTGYS    AL +P DG++   +               A  +HKI+   
Sbjct: 68  IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL 127
Query: 48  SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
             AL  LD+LL   E    FD A +DADK+N   Y
Sbjct: 128 KPALETLDELLAAGEAG-TFDVAVVDADKENCSAY 161

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 27/103 (26%)
Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESE-------A 50
           K+ IEIG FTGYS    A  +PEDG+I   D        AR   K N +E++       A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 51  LSVLDQLLKDSENEVNF--DYA---------FMDADKDNYCNY 82
           L  L Q+L DS++  ++  D+A         F+DADK+NY NY
Sbjct: 122 LETL-QVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNY 163

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 4   KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES 48
           + K+ +EIG   GYS    A  +P DGQ+  ++               A VD ++   E 
Sbjct: 63  QAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
Query: 49  EALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR 84
            AL  L+ L +       FD  F+DADK N  +Y+R
Sbjct: 123 PALQSLESLGECPA----FDLIFIDADKPNNPHYLR 154

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KK I+IG FTGYS     L +P+DG +   D               A +  KI    S A
Sbjct: 66  KKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA 125
Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV 87
              L +L+   +    +D  ++DADK N   Y  E +
Sbjct: 126 KDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESL 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	1e-29
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-29
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	2e-27
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	4e-27
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-26
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	2e-26
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	6e-26
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-25
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	2e-25
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	4e-25
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	3e-24
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-24
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	8e-24
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	9e-24

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  105 bits (265), Expect = 1e-29
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 42/157 (26%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K T+EIGV+TGYSL  TAL IPEDG+I A+D               A VDHKI+F E  A
Sbjct: 81  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 140

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L VLD+++KD +N  ++D+ F+DADKDNY NY                            
Sbjct: 141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP 200

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
            +     +    +  +L+LN++L  DP +++  + +G
Sbjct: 201 PDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG 237

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  105 bits (264), Expect = 2e-29
 Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 43/157 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KKTIE+GVFTGYSL LTAL+IP+DG+ITAID               A V+HKINFIES+A
Sbjct: 72  KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA 131

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           +  LD LL+  E+E ++D+ F+DADK NY  Y                            
Sbjct: 132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQP 191

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
             +VPD  + +  +A+++LN+ L  DP +++ H+ LG
Sbjct: 192 ESEVPDFMKENR-EAVIELNKLLAADPRIEIVHLPLG 227

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 99.6 bits (249), Expect = 2e-27
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 37/151 (24%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KK I+IG FTGYS     L +P+DG +   D               A +  KI    S A
Sbjct: 66  KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA 125

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
              L +L+   +    +D  ++DADK N   Y  E +                      +
Sbjct: 126 KDTLAELIHAGQAWQ-YDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADE 184

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
             +  + Q I   N+ +  D  V +  + +G
Sbjct: 185 ENQSENNQLIRLFNQKVYKDERVDMILIPIG 215

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 99.3 bits (248), Expect = 4e-27
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 37/151 (24%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KK +E+G FTGYS    +L +P+DGQ+   D               A+ +HKI      A
Sbjct: 62  KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
           L  L  LL +      FD+ F+DADK NY NY    +                       
Sbjct: 122 LDTLHSLLNEGGEHQ-FDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDP 180

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
           +      + I  LN+ + +D  V +S +A+ 
Sbjct: 181 NDTSGQTREIKKLNQVIKNDSRVFVSLLAIA 211

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 98.1 bits (245), Expect = 1e-26
 Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 37/151 (24%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K+ +EIGVF GYS    AL +P DGQI A D               A V  KI+     A
Sbjct: 74  KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
           L+ L+QL +       FD  F+DADK NY  Y    +                       
Sbjct: 134 LATLEQLTQGKPLP-EFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEV 192

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
             + +  Q +   NR L  D  V++S + LG
Sbjct: 193 DPQEAQTQVLQQFNRDLAQDERVRISVIPLG 223

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 97.4 bits (243), Expect = 2e-26
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 37/151 (24%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           KK +++G FTGYS    AL +P DG++   +               A  +HKI+     A
Sbjct: 71  KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA 130

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
           L  LD+LL   E    FD A +DADK+N   Y    +                       
Sbjct: 131 LETLDELLAAGEAG-TFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQP 189

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
                + + + +LN  +  D  V +S + LG
Sbjct: 190 PKGDVAAECVRNLNERIRRDVRVYISLLPLG 220

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 96.6 bits (241), Expect = 6e-26
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 40/148 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K+ +EIG   GYS    A  +P DGQ+  ++               A VD ++   E  A
Sbjct: 65  KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA 124

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
           L  L+ L         FD  F+DADK N  +Y+R  +                       
Sbjct: 125 LQSLESL----GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNP 180

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLSHV 117
                  Q +      +  +P +  + +
Sbjct: 181 QSADERVQGVRQFIEMMGAEPRLTATAL 208

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 95.0 bits (237), Expect = 2e-25
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 38/146 (26%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           +  +EIG   GYS    A  +   G++  ++               A ++ ++      A
Sbjct: 60  RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA 119

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVP---------------------D 89
           L  L Q+  ++E    FD+ F+DADK N   Y    +                      +
Sbjct: 120 LDSLQQI--ENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDN 177

Query: 90  HFRGSSKQAILDLNRSLVDDPCVQLS 115
                  Q I      +  +P V  +
Sbjct: 178 TSNDPRVQGIRRFYELIAAEPRVSAT 203

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 95.1 bits (237), Expect = 2e-25
 Identities = 40/161 (24%), Positives = 55/161 (34%), Gaps = 46/161 (28%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K+ IEIG FTGYS    A  +PEDG+I   D                 +++KI      A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121

Query: 51  LSVLDQLLKDSENEVN----------FDYAFMDADKDNYCNYMREQVP------------ 88
           L  L  L+                   D  F+DADK+NY NY    +             
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181

Query: 89  ---------DHFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
                       +  S   I   N  + +D  V +S V + 
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIA 222

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 93.9 bits (234), Expect = 4e-25
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
              +E+G + GYS    A  +    ++  ++               A +  K+  +   +
Sbjct: 60  SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS 119

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
             ++ QL K  + +   D  F+D  KD Y   
Sbjct: 120 QDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPD 150

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 91.6 bits (228), Expect = 3e-24
 Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 42/152 (27%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------AR--------VDHKINFIESE 49
              I I    G         + ++  +T ID        A+           ++ F+ S 
Sbjct: 58  TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR 117

Query: 50  ALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE--------------------QVPD 89
            L V+ +L  DS     +   F      +    +                       + D
Sbjct: 118 PLDVMSRLANDS-----YQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIAD 172

Query: 90  -HFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
              +    QA  D +  +       ++ + LG
Sbjct: 173 QTRKDRDTQAARDADEYIRSIEGAHVARLPLG 204

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 90.7 bits (226), Expect = 5e-24
 Identities = 19/150 (12%), Positives = 37/150 (24%), Gaps = 42/150 (28%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           +  +  G   G + +  A  I    ++  ID                 +  ++     + 
Sbjct: 58  QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP 117

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE--------------------QVPDH 90
           L +              D  FMD D  N  + +                       V + 
Sbjct: 118 LGIAAGQRD-------IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES 170

Query: 91  FRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
                  A+ + N  L        + V +G
Sbjct: 171 HEDPETAALREFNHHLSRRRDFFTTIVPVG 200

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 90.8 bits (226), Expect = 8e-24
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 45/155 (29%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
            + +EIG   GYS    A  +P +  I +I+                 ++ +I  +  +A
Sbjct: 56  ARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR-------------------------E 85
           L + ++L    E    FD  F+DA K  Y  +                            
Sbjct: 115 LQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAET 170

Query: 86  QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
            +           I   N+ L++ P        +G
Sbjct: 171 DIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVG 205

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 90.4 bits (225), Expect = 9e-24
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 49/157 (31%)

Query: 6   KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
           K  +EIG   GYS    A  I +D  +T I+                  ++++  IE  A
Sbjct: 73  KNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA 131

Query: 51  LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM--------------------------- 83
           L   + +         +D  F+DA K     +                            
Sbjct: 132 LEQFENVNDKV-----YDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDI 186

Query: 84  REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALG 120
                 + R   K  + D N  L+  P    + + + 
Sbjct: 187 GIVRSRNVRQMVK-KVQDYNEWLIKQPGYTTNFLNID 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.91
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.9
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.88
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.86
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.86
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.85
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.85
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.84
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.84
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.83
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.79
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.78
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.76
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.67
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.41
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.37
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.3
2o07_A	304	Spermidine synthase; structural genomics, structur	99.25
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.18
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.14
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.1
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.08
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.07
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.06
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.03
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.03
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.02
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.02
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.01
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.01
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.01
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.0
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.99
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.99
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.98
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.98
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.98
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.98
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.97
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.94
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.94
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.94
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.93
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.93
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.92
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.92
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.91
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.91
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.91
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.89
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.89
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.89
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.89
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.88
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.88
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.87
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.87
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.87
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.87
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.86
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.86
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.86
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.86
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.86
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.85
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.85
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.84
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.84
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.84
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.84
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.83
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.83
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.82
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.82
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.82
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.82
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.81
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.81
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.8
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.8
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.8
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.79
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.79
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.79
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.79
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.78
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.78
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.78
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.77
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.77
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.77
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.77
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.77
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.77
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.76
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.75
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.75
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.74
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.73
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.73
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.73
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.73
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.72
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.72
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.72
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.72
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.72
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.72
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.72
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.71
3ocj_A	305	Putative exported protein; structural genomics, PS	98.71
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.71
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.71
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.71
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	98.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.71
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.7
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.7
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.69
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.68
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.68
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.67
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.67
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.67
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.67
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.67
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.66
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.66
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.66
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.65
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.65
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.65
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.64
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.64
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.64
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.64
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.64
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.64
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.64
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.63
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.63
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.63
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.62
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.62
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.62
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.62
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.62
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.61
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.61
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.6
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.6
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.6
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.6
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.59
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.59
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.58
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.57
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.57
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.56
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.56
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.55
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.55
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.55
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.54
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.53
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.53
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.53
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.53
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.52
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.52
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.52
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.52
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.5
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.5
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.5
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.5
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.5
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.5
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.49
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.49
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.49
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.48
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.47
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.47
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.47
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.47
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.45
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.45
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.45
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.45
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.45
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.44
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.44
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.44
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.44
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.42
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.4
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.39
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.39
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.39
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.38
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.37
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.37
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.36
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.36
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.35
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.34
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.34
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.32
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.3
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.3
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.29
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.29
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.28
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.28
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.26
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.24
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.23
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.22
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.22
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.22
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.21
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.19
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.18
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.18
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.16
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.15
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.15
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.15
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.15
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.14
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.14
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.12
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.07
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.06
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.06
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.06
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.06
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.06
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.04
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.04
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.02
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.02
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.02
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.98
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.93
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.93
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.91
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.91
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.89
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.85
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.81
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.79
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.79
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.7
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.67
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.66
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.6
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.55
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.52
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.45
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.45
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.44
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.37
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.36
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.34
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.3
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.29
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.05
3lkd_A	542	Type I restriction-modification system methyltrans	96.99
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.97
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.96
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.92
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.66
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	96.54
3khk_A	544	Type I restriction-modification system methylation	96.52
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.35
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.05
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.94
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.28
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.81
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.23
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.73
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.7
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	92.61
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	91.41
3ufb_A	530	Type I restriction-modification system methyltran	89.54
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.61
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	87.33
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	86.32
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.76
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	85.68
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	85.65
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	85.39
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	84.82
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.51
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	84.01
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	82.85
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	81.72
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	81.28
2zig_A	297	TTHA0409, putative modification methylase; methylt	81.2
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	80.07

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.91  E-value=5.6e-24  Score=155.47  Aligned_cols=114  Identities=17%  Similarity=0.267  Sum_probs=96.7

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +|||||||+|+++++||++++++++|+++|               .++. ++|+++.+|+.+.++.+.     .++||+|
T Consensus        59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~~fD~V  133 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----NDSYQLV  133 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TTCEEEE
T ss_pred             CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CCCcCeE
Confidence            999999999999999999998789999999               5776 799999999999877642     4789999


Q ss_pred             EEcCCCcCCHHHHhhh--------------C------CCC-CCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           71 FMDADKDNYCNYMREQ--------------V------PDH-FRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        71 ~id~~~~~~~~~~~~~--------------~------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      |+|+++.+|+.+++..              +      .+. .+.....++++|++.+.++|++++++||+|||++|
T Consensus       134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~  209 (221)
T 3dr5_A          134 FGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTV  209 (221)
T ss_dssp             EECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEE
T ss_pred             EEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHH
Confidence            9999999999888721              1      111 12236678999999999999999999999999974

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.90  E-value=9e-23  Score=150.78  Aligned_cols=121  Identities=36%  Similarity=0.618  Sum_probs=99.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++++|||||||+|++|++||++++++++|+++|               .++.++|+++.+|+.+.++.+... +..++||
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~-~~~~~fD  138 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE-GGEHQFD  138 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH-HCSSCEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc-cCCCCEe
Confidence            578999999999999999999998789999999               466679999999999988765321 0136899


Q ss_pred             EEEEcCCCcCCHHHHhhh--------------C------CC-CCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           69 YAFMDADKDNYCNYMREQ--------------V------PD-HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~--------------~------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      +||+|+++..|..+++..              +      .+ .......+++++|++.|.++++|+++++|++||+.|
T Consensus       139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~  216 (242)
T 3r3h_A          139 FIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFL  216 (242)
T ss_dssp             EEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEE
T ss_pred             EEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCceEE
Confidence            999999998898888721              1      11 111246788999999999999999999999999974

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.88  E-value=6.5e-22  Score=145.40  Aligned_cols=123  Identities=50%  Similarity=0.849  Sum_probs=99.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++++|||||||+|+++++++++++++++|+++|               .++.++|+++.+|+.+.++.+..+....++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3678999999999999999999998789999999               5776789999999999887663210013689


Q ss_pred             eEEEEcCCCcCCHHHHhhh--------------C------CCC--CCc----chHHHHHHHHHHhhcCCCeEEEEeecCC
Q 042171           68 DYAFMDADKDNYCNYMREQ--------------V------PDH--FRG----SSKQAILDLNRSLVDDPCVQLSHVALGE  121 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~~--------------~------~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~lp~~~  121 (125)
                      |+||+|+++..|..+++..              +      ...  ...    ...+.+++|++.|.++++|.++++|++|
T Consensus       149 D~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~d  228 (237)
T 3c3y_A          149 DFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGD  228 (237)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTT
T ss_pred             CEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC
Confidence            9999999999999888821              1      000  000    1467899999999999999999999999


Q ss_pred             cccC
Q 042171          122 SVDI  125 (125)
Q Consensus       122 G~~i  125 (125)
                      |+.|
T Consensus       229 G~~~  232 (237)
T 3c3y_A          229 GITF  232 (237)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            9864

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.86  E-value=6.3e-21  Score=141.23  Aligned_cols=123  Identities=47%  Similarity=0.811  Sum_probs=98.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++++|||||||+|+++++++++++++++|+++|               .++.++|+++.+|+.+.++.+.......++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3678999999999999999999998789999999               5676789999999999887653210003689


Q ss_pred             eEEEEcCCCcCCHHHHhhh--------------C--------CCCCCc-----chHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171           68 DYAFMDADKDNYCNYMREQ--------------V--------PDHFRG-----SSKQAILDLNRSLVDDPCVQLSHVALG  120 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~~--------------~--------~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~  120 (125)
                      |+||+|+++..|..+++..              +        +.....     ...+++++|++.|.+++++.++++|++
T Consensus       158 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~  237 (247)
T 1sui_A          158 DFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG  237 (247)
T ss_dssp             SEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECST
T ss_pred             EEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecC
Confidence            9999999998998888721              0        000011     135689999999999999999999999


Q ss_pred             CcccC
Q 042171          121 ESVDI  125 (125)
Q Consensus       121 ~G~~i  125 (125)
                      ||+.|
T Consensus       238 dG~~l  242 (247)
T 1sui_A          238 DGITI  242 (247)
T ss_dssp             TCEEE
T ss_pred             CccEE
Confidence            99864

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.86  E-value=7.2e-21  Score=139.16  Aligned_cols=121  Identities=39%  Similarity=0.594  Sum_probs=98.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|+++++++++++++++|+++|               .++.++++++.+|+.+.++.+... ...++||
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~-~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG-KPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS-SSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-CCCCCcC
Confidence            578999999999999999999998678999999               366678999999999887766321 0016899


Q ss_pred             EEEEcCCCcCCHHHHhhh--------------C------CCC-CCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           69 YAFMDADKDNYCNYMREQ--------------V------PDH-FRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~--------------~------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      +||+|+.+..|..+++..              +      .+. ......+.+++|++.|.++++++++++|++||+.+
T Consensus       151 ~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~  228 (232)
T 3cbg_A          151 LIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTL  228 (232)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEE
Confidence            999999988888888721              0      000 11247788999999999999999999999999864

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.85  E-value=1.3e-20  Score=135.88  Aligned_cols=121  Identities=31%  Similarity=0.508  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|++++++++.++++++|+++|               .++.++++++++|+.+.++.+... ...++||
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD  142 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-GQAWQYD  142 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-TCTTCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-cCCCCcc
Confidence            567999999999999999999998779999999               567778999999999887765321 0017899


Q ss_pred             EEEEcCCCcCCHHHHhhh--------------C------C-CCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           69 YAFMDADKDNYCNYMREQ--------------V------P-DHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~--------------~------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      +||+|+.+..+..+++..              +      . ...+....+++++|++.+.++++++++++|+++|+.+
T Consensus       143 ~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~  220 (225)
T 3tr6_A          143 LIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTL  220 (225)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEE
Confidence            999999988888887721              1      0 1112236778999999999999999999999999874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.85  E-value=2.4e-20  Score=134.86  Aligned_cols=121  Identities=33%  Similarity=0.547  Sum_probs=98.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|+++++++++++++++|+++|               .++.++++++.+|+.+.++.+.... ..++||
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~~~D  147 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAGTFD  147 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTTCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCCCcc
Confidence            578999999999999999999987678999999               4666799999999998877663210 016899


Q ss_pred             EEEEcCCCcCCHHHHhhh--------------C------C-CCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           69 YAFMDADKDNYCNYMREQ--------------V------P-DHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~--------------~------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      +||+|+.+..|..+++..              +      . +.......+++++|++.+.++++++++++|++||+.|
T Consensus       148 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~  225 (229)
T 2avd_A          148 VAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTL  225 (229)
T ss_dssp             EEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCceEE
Confidence            999999988888888721              0      0 1112247889999999999999999999999999974

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.84  E-value=3e-20  Score=134.01  Aligned_cols=120  Identities=22%  Similarity=0.366  Sum_probs=98.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|+++++++++++++++|+++|               .++.++++++.+|+.+.++.+...  ...+||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--KYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--TCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--CCCCcC
Confidence            578999999999999999999998779999999               577778999999999887776432  126799


Q ss_pred             EEEEcCCCcCCHHHHhhh---CC------------------CCCCcchHHHHHHHHHHhhcCCCeEEEEeec-----CCc
Q 042171           69 YAFMDADKDNYCNYMREQ---VP------------------DHFRGSSKQAILDLNRSLVDDPCVQLSHVAL-----GES  122 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-----~~G  122 (125)
                      +||+|+.+..++.+++..   +.                  ........+++++|++.+.++++++++++|+     +||
T Consensus       136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG  215 (223)
T 3duw_A          136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDG  215 (223)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEE
T ss_pred             EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCe
Confidence            999999988888888732   10                  0111236788999999999999999999999     999


Q ss_pred             ccC
Q 042171          123 VDI  125 (125)
Q Consensus       123 ~~i  125 (125)
                      +.+
T Consensus       216 ~~~  218 (223)
T 3duw_A          216 FIM  218 (223)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            864

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.84  E-value=2.3e-20  Score=136.36  Aligned_cols=115  Identities=23%  Similarity=0.353  Sum_probs=95.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHH-HHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLD-QLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~-~~~~~~~~~~~f   67 (125)
                      ++.+|||||||+|++++++++..+ +++|+++|               .++.++++++.+|+.+.++ .+      .++|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCc
Confidence            578999999999999999999776 79999999               5676799999999998877 55      4789


Q ss_pred             eEEEEcCCCcCCHHHHhhh--------------C------CCCCC------cchHHHHHHHHHHhhcCCCeEEEEeecCC
Q 042171           68 DYAFMDADKDNYCNYMREQ--------------V------PDHFR------GSSKQAILDLNRSLVDDPCVQLSHVALGE  121 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~~--------------~------~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~~  121 (125)
                      |+||+|+++..+..+++..              +      .+...      ....+++++|++.+.++++++++++|++|
T Consensus       144 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d  223 (232)
T 3ntv_A          144 DMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDD  223 (232)
T ss_dssp             EEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTT
T ss_pred             cEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence            9999999999998888732              1      00000      01356899999999999999999999999


Q ss_pred             cccC
Q 042171          122 SVDI  125 (125)
Q Consensus       122 G~~i  125 (125)
                      |+.|
T Consensus       224 G~~i  227 (232)
T 3ntv_A          224 GLAI  227 (232)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            9874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.83  E-value=5.5e-20  Score=135.79  Aligned_cols=118  Identities=28%  Similarity=0.470  Sum_probs=97.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|+++++++++++++++|+++|               .++.++|+++.+|+.+.++.+.    ..++||
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~fD  138 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAFD  138 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCeE
Confidence            578999999999999999999998779999999               5777799999999999877651    135899


Q ss_pred             EEEEcCCCcCCHHHHhhh---C-----------------C-CCCCcchHHHHHHHHHHhhcCCCeEEEEe-ecC----Cc
Q 042171           69 YAFMDADKDNYCNYMREQ---V-----------------P-DHFRGSSKQAILDLNRSLVDDPCVQLSHV-ALG----ES  122 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~---~-----------------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-p~~----~G  122 (125)
                      +||+|+.+..++.+++..   +                 . +..+....+++++|++.+.++++|+++++ |++    ||
T Consensus       139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG  218 (248)
T 3tfw_A          139 LIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDG  218 (248)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEE
T ss_pred             EEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCe
Confidence            999999998999888732   1                 0 11112367889999999999999999998 776    99


Q ss_pred             ccC
Q 042171          123 VDI  125 (125)
Q Consensus       123 ~~i  125 (125)
                      +.|
T Consensus       219 ~~i  221 (248)
T 3tfw_A          219 FTL  221 (248)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.79  E-value=3.2e-18  Score=125.05  Aligned_cols=122  Identities=34%  Similarity=0.476  Sum_probs=96.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhc--------
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKD--------   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~--------   60 (125)
                      ++.+|||||||+|++++++++.++++++|+++|               .++.++++++.+|+.+.++.+...        
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            567999999999999999999998678999999               456567999999999877755210        


Q ss_pred             -CCCC-CceeEEEEcCCCcCCHHHHhhh-----------CC----------CCCCcchHHHHHHHHHHhhcCCCeEEEEe
Q 042171           61 -SENE-VNFDYAFMDADKDNYCNYMREQ-----------VP----------DHFRGSSKQAILDLNRSLVDDPCVQLSHV  117 (125)
Q Consensus        61 -~~~~-~~fD~v~id~~~~~~~~~~~~~-----------~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  117 (125)
                       .... ++||+||+++....++.+++..           +.          +.........+++|++.+.+++++.++++
T Consensus       140 ~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLV  219 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             cccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEE
Confidence             0001 6899999999888888777721           00          11112467889999999999999999999


Q ss_pred             ecCCcccC
Q 042171          118 ALGESVDI  125 (125)
Q Consensus       118 p~~~G~~i  125 (125)
                      |+++|+.+
T Consensus       220 p~~~g~~~  227 (239)
T 2hnk_A          220 PIADGVSL  227 (239)
T ss_dssp             CSTTCEEE
T ss_pred             EcCCceEe
Confidence            99999864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.78  E-value=6.6e-19  Score=126.19  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=91.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|+++++++++++++++|+++|               .++.++++++.+|+.+.++.+      .+ ||
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-fD  128 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-ID  128 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-EE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-CC
Confidence            578999999999999999999987679999999               355568999999999876643      35 99


Q ss_pred             EEEEcCCCcCCHHHHhhhC-----------CC--CC-------CcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           69 YAFMDADKDNYCNYMREQV-----------PD--HF-------RGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~~-----------~~--~~-------~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      +||+|+.+..+..+++...           .+  +.       .....+.+++|++.+.+++++.++++|+++|+.+
T Consensus       129 ~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~  205 (210)
T 3c3p_A          129 ILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLL  205 (210)
T ss_dssp             EEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC------------CCCHHHHHHTTCTTEEEEEECSTTCEEE
T ss_pred             EEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCcccchHHHHHHHHHHHHhhCCCeEEEEEecCCceEE
Confidence            9999998888888887321           00  00       1125566899999999999999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.76  E-value=1.2e-18  Score=125.93  Aligned_cols=121  Identities=16%  Similarity=0.251  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|++++++|++++++++|+++|               .++.++|+++.+|+.+.++.+.... ..++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~-~~~~fD  136 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY-DVDTLD  136 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTS-CCCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhc-CCCceE
Confidence            578999999999999999999987789999999               4676789999999998877652110 116899


Q ss_pred             EEEEcCCCcCCHHHHh---hh--CCCC----CCcchHHHHHHHHHHhhcCCCeEEEEee-------cCCcccC
Q 042171           69 YAFMDADKDNYCNYMR---EQ--VPDH----FRGSSKQAILDLNRSLVDDPCVQLSHVA-------LGESVDI  125 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~---~~--~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~lp-------~~~G~~i  125 (125)
                      +||+|+.+..|.++++   ..  +.+.    ..+....+.++|++.++++++|+++.+|       ++||+.+
T Consensus       137 ~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~  209 (221)
T 3u81_A          137 MVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEK  209 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCcccchHHHHHHHhccccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEE
Confidence            9999999888876543   11  1110    0111223358999999999999999999       7999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.67  E-value=1.9e-16  Score=114.98  Aligned_cols=117  Identities=23%  Similarity=0.376  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|++++++++.+| +++|+++|               .++.++++++.+|+.+.++.+.    ..++||
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~fD  128 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----LYPLFD  128 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----TSCCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----cCCCcc
Confidence            467999999999999999999997 79999999               4666789999999998766542    136899


Q ss_pred             EEEEcCCCcCCHHHHhhh-----------CCC--CC----------Cc--chHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171           69 YAFMDADKDNYCNYMREQ-----------VPD--HF----------RG--SSKQAILDLNRSLVDDPCVQLSHVALGESV  123 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~-----------~~~--~~----------~~--~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~  123 (125)
                      +|+++.....+..+++..           +..  ..          +.  .....+++|++.+.++++|.++++|+++|+
T Consensus       129 ~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG~  208 (233)
T 2gpy_A          129 VLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGI  208 (233)
T ss_dssp             EEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC-------------------------CTTTTCTTEEEEEECSTTCE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccccccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCeE
Confidence            999999887777777721           000  00          00  124668899999999999999999999998


Q ss_pred             cC
Q 042171          124 DI  125 (125)
Q Consensus       124 ~i  125 (125)
                      .+
T Consensus       209 ~~  210 (233)
T 2gpy_A          209 AI  210 (233)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.41  E-value=2.4e-13  Score=102.91  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC----CCCEEEEEe--CC--------------------------------------
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIP----EDGQITAID--AR--------------------------------------   38 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~----~~~~v~~iD--~~--------------------------------------   38 (125)
                      ..|.+|||+||+.|+|+++||+.++    ++++|+++|  .+                                      
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3588999999999999999998874    378999999  12                                      


Q ss_pred             -C-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC-cCCHHHHhhhC----------CCCCC--cchHHHHHHHH
Q 042171           39 -V-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK-DNYCNYMREQV----------PDHFR--GSSKQAILDLN  103 (125)
Q Consensus        39 -~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~-~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~  103 (125)
                       + .++|++++|++.+.+|.+.     .++|||||+|+++ ..+..+++...          -+...  ....+++++|+
T Consensus       185 gl~~~~I~li~Gda~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~  259 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYR  259 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHH
T ss_pred             CCCcCceEEEEeCHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence             1 2789999999999988752     4689999999997 34556666321          12111  11455555555


Q ss_pred             HHhhcCCCeEEEEeecCCc
Q 042171          104 RSLVDDPCVQLSHVALGES  122 (125)
Q Consensus       104 ~~l~~~~~~~~~~lp~~~G  122 (125)
                      +.    .+++..++++..+
T Consensus       260 ~~----~~i~~~i~~~~~~  274 (282)
T 2wk1_A          260 AK----FDIADELITIDRD  274 (282)
T ss_dssp             HH----TTCCSCCEECSSS
T ss_pred             Hh----cCCceEEEEecCE
Confidence            44    4566677777643

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.37  E-value=7.6e-13  Score=95.89  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=72.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC--CCcEEEEecchHHH-------------
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV--DHKINFIESEALSV-------------   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~--~~~i~~~~gd~~~~-------------   53 (125)
                      ++++||||||  ||||+|||+. + +++|++||               +++  .++|+++.||+.+.             
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence            5789999998  7999999994 4 79999999               677  78999999997643             


Q ss_pred             -HHHHhhc---CCCCCceeEEEEcCCCcCCHHHHhhh----------CCCC-CCcchHHHHHHHHHHhhcCCCeEEEE
Q 042171           54 -LDQLLKD---SENEVNFDYAFMDADKDNYCNYMREQ----------VPDH-FRGSSKQAILDLNRSLVDDPCVQLSH  116 (125)
Q Consensus        54 -l~~~~~~---~~~~~~fD~v~id~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (125)
                       ++.+..+   ....++||+||+|+.++.  .++...          +-++ .....-..+.+|...+..+++.-.-.
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~  181 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQ  181 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEE
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEE
Confidence             3322110   011378999999999863  333311          1122 11124455788888887777744433

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=1.4e-12  Score=95.66  Aligned_cols=77  Identities=25%  Similarity=0.358  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhh---CCCCCEEEEEe---------CCCCCcEEEEecchHHH--HHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALT---IPEDGQITAID---------ARVDHKINFIESEALSV--LDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~---~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~   69 (125)
                      ++.+|||||||+|++|++|++.   +.++++|++||         .++.++|+++++|+.+.  ++.+     ...+||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~-----~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL-----REMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG-----SSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhh-----ccCCCCE
Confidence            4679999999999999999998   44479999999         12346899999999875  4433     1347999


Q ss_pred             EEEcCCCcCCHHHHhh
Q 042171           70 AFMDADKDNYCNYMRE   85 (125)
Q Consensus        70 v~id~~~~~~~~~~~~   85 (125)
                      |++|+.+..++.++..
T Consensus       156 I~~d~~~~~~~~~l~~  171 (236)
T 2bm8_A          156 IFIDNAHANTFNIMKW  171 (236)
T ss_dssp             EEEESSCSSHHHHHHH
T ss_pred             EEECCchHhHHHHHHH
Confidence            9999998777777763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.30  E-value=1.3e-11  Score=94.40  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++++|||||||+|.++.++++..+ ..+|+++|            .     ++ .++++++.+|+.+.++..      .
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~  179 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------K  179 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------T
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------C
Confidence            3578999999999999999998755 68999999            1     22 468999999999877642      4


Q ss_pred             CceeEEEEcCCCc------CC-HHHHhhh-----------C-C--CCCCcchHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171           65 VNFDYAFMDADKD------NY-CNYMREQ-----------V-P--DHFRGSSKQAILDLNRSLVDDPCVQLSHVALG  120 (125)
Q Consensus        65 ~~fD~v~id~~~~------~~-~~~~~~~-----------~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  120 (125)
                      ++||+|++|....      .| ..+++..           + .  .+........+.++++.+..+.++..+.+|+.
T Consensus       180 ~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~  256 (314)
T 2b2c_A          180 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTY  256 (314)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTS
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCc
Confidence            7899999998432      23 4455521           0 1  11122356678888888888888888888884

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.25  E-value=3e-11  Score=91.91  Aligned_cols=111  Identities=12%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++++|||||||+|..+.++++..+ ..+|+++|            .     ++ .++++++.+|+.+.++..      .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~  166 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------Q  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------S
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------C
Confidence            3678999999999999999998754 68999999            1     22 468999999999877642      4


Q ss_pred             CceeEEEEcCCCcC-------CHHHHhhh---C-----------CCCCCcchHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171           65 VNFDYAFMDADKDN-------YCNYMREQ---V-----------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVALG  120 (125)
Q Consensus        65 ~~fD~v~id~~~~~-------~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  120 (125)
                      ++||+|++|.....       +..+++..   +           ..+......+.++++++.+..+.++..+.+|+-
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~  243 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTY  243 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTS
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccc
Confidence            78999999987532       23445421   0           111111256778999999998888888888874

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.18  E-value=1.2e-10  Score=88.80  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----C-C-CCcEEEEecchHHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----R-V-DHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~-~-~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      .++++|||||||+|..+..+++..+ ..+|+++|            .     + + .++++++.+|+.+.++..      
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------  148 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------
Confidence            3578999999999999999998755 68999999            1     1 2 468999999999876652      


Q ss_pred             CCceeEEEEcCCCcC----------CHHHHhhh---C-----------CCC-CCcchHHHHHHHHHHhhcCCCeEEEEee
Q 042171           64 EVNFDYAFMDADKDN----------YCNYMREQ---V-----------PDH-FRGSSKQAILDLNRSLVDDPCVQLSHVA  118 (125)
Q Consensus        64 ~~~fD~v~id~~~~~----------~~~~~~~~---~-----------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp  118 (125)
                      .++||+|++|...+.          ...+++.+   +           ... ......+.+.+..+.+..+..+..+.+|
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP  228 (314)
T 1uir_A          149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIP  228 (314)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEG
T ss_pred             CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecC
Confidence            578999999987644          34555521   0           011 1112555666666666666667777788


Q ss_pred             cCCc
Q 042171          119 LGES  122 (125)
Q Consensus       119 ~~~G  122 (125)
                      ..+|
T Consensus       229 ~~~g  232 (314)
T 1uir_A          229 GFFL  232 (314)
T ss_dssp             GGTE
T ss_pred             CCCC
Confidence            8776

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.14  E-value=2.8e-10  Score=85.30  Aligned_cols=110  Identities=12%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C----CC--------CCcEEEEecchHHHHHHHhh
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A----RV--------DHKINFIESEALSVLDQLLK   59 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~----~~--------~~~i~~~~gd~~~~l~~~~~   59 (125)
                      ++++|||||||+|..+..+++. + ..+|+++|            .    ++        .++++++.+|+.+.++.   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~---  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc---
Confidence            5789999999999999999998 5 78999999            2    33        46899999999987654   


Q ss_pred             cCCCCCceeEEEEcCCCc------C-CHHHHhhh---C-----------CCCCCcchHHHHHHHHHHhhcCCCeEEEEee
Q 042171           60 DSENEVNFDYAFMDADKD------N-YCNYMREQ---V-----------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVA  118 (125)
Q Consensus        60 ~~~~~~~fD~v~id~~~~------~-~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp  118 (125)
                          .++||+|++|....      . ...+++..   +           .........+.+.++.+.+..+..+..+.+|
T Consensus       150 ----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP  225 (281)
T 1mjf_A          150 ----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVI  225 (281)
T ss_dssp             ----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCT
T ss_pred             ----cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecC
Confidence                26799999998632      1 24555521   1           0111112455566666666666666667788


Q ss_pred             cCCc
Q 042171          119 LGES  122 (125)
Q Consensus       119 ~~~G  122 (125)
                      ..+|
T Consensus       226 ~~~g  229 (281)
T 1mjf_A          226 GYAS  229 (281)
T ss_dssp             TSSS
T ss_pred             CCCc
Confidence            8766

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.10  E-value=3.6e-10  Score=78.11  Aligned_cols=63  Identities=14%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|               .++.++++++.+|+.+.++..      .++||
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~fD  102 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGRFD  102 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSCEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCCCC
Confidence            5679999999999999999987 4 57999999               345568999999999876653      46799


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|+++.
T Consensus       103 ~i~~~~  108 (177)
T 2esr_A          103 LVFLDP  108 (177)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999864

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.08  E-value=1.8e-10  Score=80.90  Aligned_cols=65  Identities=9%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.+++.++++++|               .++.++++++.+|+.+..+..      .++||
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~fD   95 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCPVK   95 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSCEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCCce
Confidence            346999999999999999999985578999999               455578999999997763322      47899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|+++.
T Consensus        96 ~v~~~~  101 (197)
T 3eey_A           96 AVMFNL  101 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.07  E-value=2.6e-10  Score=83.25  Aligned_cols=67  Identities=18%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|+++.++++..+  .++++||             .....+++++.+++.+.++.+     ++++||.|
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~FD~i  132 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----PDGHFDGI  132 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----CTTCEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-----cccCCceE
Confidence            456999999999999999998754  6899999             233467999999999886655     26789999


Q ss_pred             EEcCCCc
Q 042171           71 FMDADKD   77 (125)
Q Consensus        71 ~id~~~~   77 (125)
                      +.|....
T Consensus       133 ~~D~~~~  139 (236)
T 3orh_A          133 LYDTYPL  139 (236)
T ss_dssp             EECCCCC
T ss_pred             EEeeeec
Confidence            9997643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.06  E-value=3.5e-10  Score=80.00  Aligned_cols=73  Identities=16%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++..+ .++|+++|               .++ ++++++.+|+.+.++.       ..+||
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD-------LPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT-------SCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc-------CCCCC
Confidence            456999999999999999999976 79999999               345 6899999999766443       36799


Q ss_pred             EEEEcCCCcCCHHHHhh
Q 042171           69 YAFMDADKDNYCNYMRE   85 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~   85 (125)
                      +|+++.....+..+++.
T Consensus       111 ~i~~~~~~~~~~~~l~~  127 (204)
T 3e05_A          111 RVFIGGSGGMLEEIIDA  127 (204)
T ss_dssp             EEEESCCTTCHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHH
Confidence            99999876666666663

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.06  E-value=2.3e-10  Score=84.01  Aligned_cols=73  Identities=8%  Similarity=0.006  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+ .++|+++|               .++.++|+++.+|+.+.++.       ..+||
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~~~D   86 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TDQVS   86 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-------CcCCC
Confidence            456899999999999999999765 68999999               67878999999999876542       23699


Q ss_pred             EEEEcCCCc-CCHHHHh
Q 042171           69 YAFMDADKD-NYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~-~~~~~~~   84 (125)
                      .|++.+... .....++
T Consensus        87 ~IviaG~Gg~~i~~Il~  103 (225)
T 3kr9_A           87 VITIAGMGGRLIARILE  103 (225)
T ss_dssp             EEEEEEECHHHHHHHHH
T ss_pred             EEEEcCCChHHHHHHHH
Confidence            999754322 2344444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.05  E-value=8.9e-10  Score=79.79  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|.+++.+|+..| +.+|++||               .++ .+++++.+|+.+.++...    +.++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHc----CCCChh
Confidence            457899999999999999999987 78999999               345 579999999999877532    257899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .|++.
T Consensus       108 ~v~~~  112 (218)
T 3dxy_A          108 MVQLF  112 (218)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            99985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.03  E-value=3.4e-10  Score=83.34  Aligned_cols=63  Identities=16%  Similarity=0.098  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+ ..+|+++|               .++.++|+++.+|+.+.++.       .++||
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~~~D   92 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-------ADNID   92 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-------ccccC
Confidence            456899999999999999999755 67999999               67888999999999887432       24799


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|++.+
T Consensus        93 ~IviaG   98 (230)
T 3lec_A           93 TITICG   98 (230)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998743

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.03  E-value=2.3e-09  Score=75.03  Aligned_cols=66  Identities=8%  Similarity=0.012  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+..+|||+|||+|..++.+++. + ..+|+++|               .++ ++++++++|+.+.++.+     ..++|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~f  114 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAG-----TTSPV  114 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHC-----CSSCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhc-----cCCCc
Confidence            35679999999999999988874 3 56899999               345 68999999999886654     14789


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|++|...
T Consensus       115 D~i~~~~p~  123 (189)
T 3p9n_A          115 DLVLADPPY  123 (189)
T ss_dssp             SEEEECCCT
T ss_pred             cEEEECCCC
Confidence            999997553

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.02  E-value=6.6e-10  Score=82.02  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+|...| +++|+++|               .++ .+|+++++|+.+..+.-.    ..++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l-~~v~~~~~d~~~~~~~~~----~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGL-KGARALWGRAEVLAREAG----HREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEECCHHHHTTSTT----TTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEECcHHHhhcccc----cCCCce
Confidence            467999999999999999999887 79999999               355 359999999987632100    137899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++.+.. ....+++
T Consensus       154 ~I~s~a~~-~~~~ll~  168 (249)
T 3g89_A          154 RAVARAVA-PLCVLSE  168 (249)
T ss_dssp             EEEEESSC-CHHHHHH
T ss_pred             EEEECCcC-CHHHHHH
Confidence            99997653 3445555

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.02  E-value=4.4e-10  Score=83.46  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+ ..+|+++|               .++.++|+++.+|+.+.++.       ..+||
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~~~D   92 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KDAID   92 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-------ccccc
Confidence            456899999999999999999755 67999999               67888999999999876432       23699


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .|++.
T Consensus        93 ~Ivia   97 (244)
T 3gnl_A           93 TIVIA   97 (244)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.01  E-value=6.1e-10  Score=77.44  Aligned_cols=60  Identities=12%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.   +++|+++|               .++ +++++++++..+. +.+     ..++||
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l-~~~-----~~~~fD   91 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL-DHY-----VREPIR   91 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG-GGT-----CCSCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH-Hhh-----ccCCcC
Confidence            4579999999999999999987   68999999               355 7899999877654 222     147899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus        92 ~v~~~   96 (185)
T 3mti_A           92 AAIFN   96 (185)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99987

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.01  E-value=8.4e-10  Score=84.07  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHH-HHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSL-FLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t-~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ++.+|||||||+|..+ +.+|+. + +++|+++|               .++ ++++++++|+.+. +        .++|
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~-~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------d~~F  189 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHV-Y-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------GLEF  189 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHT-T-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------GCCC
T ss_pred             CcCEEEEECCCccHHHHHHHHHc-c-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------CCCc
Confidence            5679999999998654 666654 4 79999999               467 8999999999874 3        3789


Q ss_pred             eEEEEcCCCcCCHHHHh
Q 042171           68 DYAFMDADKDNYCNYMR   84 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~   84 (125)
                      |+||+++........++
T Consensus       190 DvV~~~a~~~d~~~~l~  206 (298)
T 3fpf_A          190 DVLMVAALAEPKRRVFR  206 (298)
T ss_dssp             SEEEECTTCSCHHHHHH
T ss_pred             CEEEECCCccCHHHHHH
Confidence            99999887655555555

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.01  E-value=8.4e-10  Score=80.27  Aligned_cols=74  Identities=12%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+ +++|+++|               .++ .+++++++|+.+..... .   ..++||
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-~---~~~~fD  143 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRK-D---VRESYD  143 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCT-T---TTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEeccHHHhcccc-c---ccCCcc
Confidence            467999999999999999998766 78999999               245 36999999998752100 0   036899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++++. ..+..+++
T Consensus       144 ~V~~~~~-~~~~~~l~  158 (240)
T 1xdz_A          144 IVTARAV-ARLSVLSE  158 (240)
T ss_dssp             EEEEECC-SCHHHHHH
T ss_pred             EEEEecc-CCHHHHHH
Confidence            9999874 45556666

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.00  E-value=9.1e-10  Score=75.66  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++..+ +.+|+++|               .++.+++ ++.+|+.+.++..      .++||
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~------~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV------PDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC------CSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc------CCCCC
Confidence            345999999999999999999886 78999999               3565588 8889987665532      37899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|+++..... ..+++
T Consensus        97 ~i~~~~~~~~-~~~l~  111 (178)
T 3hm2_A           97 VIFIGGGLTA-PGVFA  111 (178)
T ss_dssp             EEEECC-TTC-TTHHH
T ss_pred             EEEECCcccH-HHHHH
Confidence            9999876544 44454

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.00  E-value=1.7e-09  Score=74.83  Aligned_cols=67  Identities=13%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|               .++.++++++.+|+.+.++.+..   ..++||
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~fD  118 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQFD  118 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---cCCCCC
Confidence            4679999999999999998883 3 57999999               34556899999999987664421   146899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       119 ~i~~~~~  125 (187)
T 2fhp_A          119 LVLLDPP  125 (187)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998644

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.99  E-value=2.6e-09  Score=81.99  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=54.6

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--CCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--DHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      .+|||||||+|..+.++++..| +.+|++||            .+.  .++++++.+|+.+.+..+     ..++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-----~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-----TPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-----CTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-----cCCCCCEEE
Confidence            3999999999999999999887 67999999            222  468999999999887643     146899999


Q ss_pred             EcCCCc
Q 042171           72 MDADKD   77 (125)
Q Consensus        72 id~~~~   77 (125)
                      +|....
T Consensus       165 ~D~~~~  170 (317)
T 3gjy_A          165 RDVFAG  170 (317)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            997644

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.99  E-value=1.3e-09  Score=77.86  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++.   +++|+++|               .++.++++++.+|+.+.++.       ..+||
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-------~~~~D  124 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-------LPLPE  124 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-------SCCCS
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-------CCCCC
Confidence            4569999999999999999997   68999999               45655899999999886543       35799


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +||++...
T Consensus       125 ~v~~~~~~  132 (204)
T 3njr_A          125 AVFIGGGG  132 (204)
T ss_dssp             EEEECSCC
T ss_pred             EEEECCcc
Confidence            99998744

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.98  E-value=3.2e-09  Score=75.61  Aligned_cols=111  Identities=16%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC----cEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH----KINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~----~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      ++.+|||||||+|..+..+++..+ ..+++++|               .++..    +++++.+|+... +.      ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~  100 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DK------RF  100 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CG------GG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-cc------cC
Confidence            567999999999999999999765 58999999               23332    799999998533 21      13


Q ss_pred             CceeEEEEcCCCcCCH-----HHHhhh---C---------------------CC-------CCCcchHHHHHHHHHHhhc
Q 042171           65 VNFDYAFMDADKDNYC-----NYMREQ---V---------------------PD-------HFRGSSKQAILDLNRSLVD  108 (125)
Q Consensus        65 ~~fD~v~id~~~~~~~-----~~~~~~---~---------------------~~-------~~~~~~~~~~~~~~~~l~~  108 (125)
                      ++||+|++.......+     .+++..   +                     +.       +......+.++++.+.+.+
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  180 (217)
T 3jwh_A          101 HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITE  180 (217)
T ss_dssp             CSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHH
T ss_pred             CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHH
Confidence            6899999876544322     233310   0                     00       0011356678888889988


Q ss_pred             CCCeEEEEeecCCc
Q 042171          109 DPCVQLSHVALGES  122 (125)
Q Consensus       109 ~~~~~~~~lp~~~G  122 (125)
                      .-+|++...++|+.
T Consensus       181 ~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          181 RFAYNVQFQPIGEA  194 (217)
T ss_dssp             HSSEEEEECCCSCC
T ss_pred             HcCceEEEEecCCc
Confidence            88999999988875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.98  E-value=1.8e-09  Score=76.93  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC----cEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH----KINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~----~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      ++.+|||||||+|..+..+++..+ ..+++++|               .++.+    +++++.+|+... +.      ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~  100 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DK------RF  100 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CG------GG
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-cc------cc
Confidence            567999999999999999999765 58999999               22322    899999998533 21      14


Q ss_pred             CceeEEEEcCCCcCCH-----HHHhhh---C-C-----------------C----------CCCcchHHHHHHHHHHhhc
Q 042171           65 VNFDYAFMDADKDNYC-----NYMREQ---V-P-----------------D----------HFRGSSKQAILDLNRSLVD  108 (125)
Q Consensus        65 ~~fD~v~id~~~~~~~-----~~~~~~---~-~-----------------~----------~~~~~~~~~~~~~~~~l~~  108 (125)
                      ++||+|++.......+     .+++..   + +                 .          +........++++.+.+.+
T Consensus       101 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  180 (219)
T 3jwg_A          101 SGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAE  180 (219)
T ss_dssp             TTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHH
Confidence            7899999876544332     233311   0 0                 0          0001256678888888888


Q ss_pred             CCCeEEEEeecCCcc
Q 042171          109 DPCVQLSHVALGESV  123 (125)
Q Consensus       109 ~~~~~~~~lp~~~G~  123 (125)
                      .-+|++...+++++-
T Consensus       181 ~~Gf~v~~~~~g~~~  195 (219)
T 3jwg_A          181 KYGYSVRFLQIGEID  195 (219)
T ss_dssp             HHTEEEEEEEESCCC
T ss_pred             HCCcEEEEEecCCcc
Confidence            889999999888763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.98  E-value=2.3e-09  Score=82.56  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++++|||||||+|..+.++++..+ ..+|+++|            .     ++ .++++++.+|+.+.++.+     ..
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~  192 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AE  192 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cC
Confidence            3578999999999999999998755 68999999            1     23 368999999999886643     14


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       193 ~~fDlIi~d~~~  204 (334)
T 1xj5_A          193 GSYDAVIVDSSD  204 (334)
T ss_dssp             TCEEEEEECCCC
T ss_pred             CCccEEEECCCC
Confidence            689999998763

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.98  E-value=1.3e-09  Score=77.10  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.+..+++.   .++|+++|               .++ .+++++.+|+.+.++.       .++||
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~~D  145 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDL-HNVSTRHGDGWQGWQA-------RAPFD  145 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC-CceEEEECCcccCCcc-------CCCcc
Confidence            4579999999999999999998   58999999               345 4799999999875432       47899


Q ss_pred             EEEEcCCCcCCHH
Q 042171           69 YAFMDADKDNYCN   81 (125)
Q Consensus        69 ~v~id~~~~~~~~   81 (125)
                      +|+++......++
T Consensus       146 ~i~~~~~~~~~~~  158 (210)
T 3lbf_A          146 AIIVTAAPPEIPT  158 (210)
T ss_dssp             EEEESSBCSSCCT
T ss_pred             EEEEccchhhhhH
Confidence            9999987766554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.97  E-value=4.1e-09  Score=78.84  Aligned_cols=67  Identities=12%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++++|||||||+|..+..+++..+ ..+|+++|            .     ++ .++++++.+|+.+.++..      .+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~  147 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------EN  147 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CS
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC
Confidence            578999999999999999998644 68999999            1     34 468999999999877642      47


Q ss_pred             ceeEEEEcCCCc
Q 042171           66 NFDYAFMDADKD   77 (125)
Q Consensus        66 ~fD~v~id~~~~   77 (125)
                      +||+|++|....
T Consensus       148 ~fD~Ii~d~~~~  159 (275)
T 1iy9_A          148 QYDVIMVDSTEP  159 (275)
T ss_dssp             CEEEEEESCSSC
T ss_pred             CeeEEEECCCCC
Confidence            899999997653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.94  E-value=3.4e-09  Score=76.05  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..++.+|+..| +.+++++|               .++ .+++++.+|+.+....+     +.++||
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~-----~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVF-----EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CcCCcC
Confidence            356899999999999999999987 78999999               345 57999999998743223     246899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|++..
T Consensus       111 ~v~~~~  116 (213)
T 2fca_A          111 RVYLNF  116 (213)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            999854

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.94  E-value=2.2e-09  Score=76.90  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC----CCCEEEEEe---------------CCC----CCcEEEEecchHHHHHHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP----EDGQITAID---------------ARV----DHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~----~~~~v~~iD---------------~~~----~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      +..+|||||||+|+.++.+++..+    +.++|+++|               .++    ..+++++.+|+.+.++.... 
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  158 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK-  158 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH-
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc-
Confidence            456999999999999999999875    468999999               231    36899999999875411000 


Q ss_pred             CCCCCceeEEEEcCCCcCCH
Q 042171           61 SENEVNFDYAFMDADKDNYC   80 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~~~~~   80 (125)
                        ..++||+|+++......+
T Consensus       159 --~~~~fD~I~~~~~~~~~~  176 (227)
T 2pbf_A          159 --ELGLFDAIHVGASASELP  176 (227)
T ss_dssp             --HHCCEEEEEECSBBSSCC
T ss_pred             --cCCCcCEEEECCchHHHH
Confidence              036899999987765543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.94  E-value=1.2e-09  Score=79.60  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.+.+.++++++|               .++.++++++.+|+.+.++        .++||
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D  164 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--------EENVD  164 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--------CCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--------CCCcC
Confidence            456999999999999999999965579999999               3666779999999986532        46799


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++|...
T Consensus       165 ~v~~~~~~  172 (255)
T 3mb5_A          165 HVILDLPQ  172 (255)
T ss_dssp             EEEECSSC
T ss_pred             EEEECCCC
Confidence            99997543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.93  E-value=1.6e-09  Score=77.35  Aligned_cols=65  Identities=18%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++..| +.+++++|               .++ ++++++.+|+.+....+     ..++||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCCC
Confidence            356899999999999999999987 78999999               345 68999999998742112     146899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       114 ~i~~~~~  120 (214)
T 1yzh_A          114 RLYLNFS  120 (214)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9999754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.93  E-value=1.9e-09  Score=79.27  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++..+  ++|+++|               .++.++++++++|+.+..+.+     ..++||
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fD  121 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-----PKERAD  121 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-----CTTCEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-----ccCCcc
Confidence            467999999999999999999854  4999999               567778999999999875433     147899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       122 ~Ii~n  126 (259)
T 3lpm_A          122 IVTCN  126 (259)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.92  E-value=1.3e-09  Score=80.18  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC-----------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR-----------VDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~-----------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|+.|..+|+.+++.|+|+++| +.           -..+++++.+|+..... ...   ..++||+||
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~-~~~---~~~~~D~I~  151 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS-YKS---VVENVDVLY  151 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG-TTT---TCCCEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh-hhc---cccceEEEE
Confidence            346999999999999999999987789999999 11           12579999999875321 100   136899999


Q ss_pred             EcCCCcCCHH
Q 042171           72 MDADKDNYCN   81 (125)
Q Consensus        72 id~~~~~~~~   81 (125)
                      +|.....-..
T Consensus       152 ~d~a~~~~~~  161 (232)
T 3id6_C          152 VDIAQPDQTD  161 (232)
T ss_dssp             ECCCCTTHHH
T ss_pred             ecCCChhHHH
Confidence            9987754433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.92  E-value=3.2e-09  Score=79.11  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhC-------CC----CCEEEEEe-CC---------------------------------
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTI-------PE----DGQITAID-AR---------------------------------   38 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~-------~~----~~~v~~iD-~~---------------------------------   38 (125)
                      ++.+|||||+|+|+++++++++.       |.    ..+++++| .+                                 
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            45699999999999999988763       42    25899999 22                                 


Q ss_pred             -----CC---CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171           39 -----VD---HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus        39 -----~~---~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                           +.   .+++++.||+.+.++.+...  ...+||+||+|+..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fs  183 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFA  183 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCC
Confidence                 22   36889999999988875210  01379999999863

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.91  E-value=2.7e-09  Score=77.13  Aligned_cols=62  Identities=24%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.   +.+|+++|               .++.++++++++|+.+..+        .++||
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D  146 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--------FLKAD  146 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------GCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------cCCCC
Confidence            4679999999999999999986   48999999               4555689999999988742        47899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|+++..-
T Consensus       147 ~v~~~~~~  154 (241)
T 3gdh_A          147 VVFLSPPW  154 (241)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.91  E-value=3.6e-09  Score=75.30  Aligned_cols=63  Identities=16%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++++++..  ..+|+++|               .++ ++++++++|+.+.++..      .++||
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~fD  124 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPHN  124 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCCC
Confidence            45799999999999999877653  35899999               344 68999999998875531      46899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|..
T Consensus       125 ~V~~~~p  131 (202)
T 2fpo_A          125 IVFVDPP  131 (202)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999755

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.91  E-value=4.5e-09  Score=78.13  Aligned_cols=64  Identities=16%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ...+|||||||+|..++.|++.++ ++.+|+++|               .+...+|+++++|+.+. |        .++|
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~--------~~~~  140 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IENA  140 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C--------CCSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c--------cccc
Confidence            456999999999999999999875 357999999               35667899999999764 2        3679


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|++....
T Consensus       141 d~v~~~~~l  149 (261)
T 4gek_A          141 SMVVLNFTL  149 (261)
T ss_dssp             EEEEEESCG
T ss_pred             ccceeeeee
Confidence            999986553

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.89  E-value=9.7e-09  Score=70.76  Aligned_cols=71  Identities=20%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..+..+++..   .+++++|               .++.++++++.+|+.+.++.       .++||
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~D  102 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IPDID  102 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-------CCCCC
Confidence            45699999999999999999875   7999999               34546899999999875432       25899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|+++........+++
T Consensus       103 ~v~~~~~~~~~~~~l~  118 (192)
T 1l3i_A          103 IAVVGGSGGELQEILR  118 (192)
T ss_dssp             EEEESCCTTCHHHHHH
T ss_pred             EEEECCchHHHHHHHH
Confidence            9999877555566665

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.89  E-value=9.5e-09  Score=70.42  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++  + ..+++++|               .++ ++++++.+|+.+.++        .++||
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLD--------KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGG--------GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccccc--------CCCCc
Confidence            456999999999999999998  3 78999999               344 579999999987432        36899


Q ss_pred             EEEEcCCCcCCHHHHhhh--CCCCC---CcchHHHHHHHHHHhhcCCCeEEEE
Q 042171           69 YAFMDADKDNYCNYMREQ--VPDHF---RGSSKQAILDLNRSLVDDPCVQLSH  116 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~  116 (125)
                      +|+++.. .....+++..  ++.-.   .........++.+.+.+.. +.+..
T Consensus       103 ~i~~~~~-~~~~~~l~~~~~~~gG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~  153 (183)
T 2yxd_A          103 KAFIGGT-KNIEKIIEILDKKKINHIVANTIVLENAAKIINEFESRG-YNVDA  153 (183)
T ss_dssp             EEEECSC-SCHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHHHHTT-CEEEE
T ss_pred             EEEECCc-ccHHHHHHHHhhCCCCEEEEEecccccHHHHHHHHHHcC-CeEEE
Confidence            9999877 4455555532  22210   0113445666777776654 44443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.89  E-value=4e-09  Score=76.26  Aligned_cols=65  Identities=18%  Similarity=0.105  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++..  ..+|+++|             .....+++++++|+.+.++.+     .+++||+|
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~fD~V  132 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----PDGHFDGI  132 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----CTTCEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-----CCCceEEE
Confidence            35699999999999999997643  35899999             122368999999999875434     25789999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++|..
T Consensus       133 ~~d~~  137 (236)
T 1zx0_A          133 LYDTY  137 (236)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.89  E-value=6.3e-09  Score=79.53  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-----C-CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-----V-DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-----~-~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++++|||||||+|..+..+++..+ ..+|+++|            ..     + .++++++.+|+.+.++..      .+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~  188 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TN  188 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CS
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CC
Confidence            578999999999999999998655 68999999            11     2 468999999999876643      47


Q ss_pred             ceeEEEEcCC
Q 042171           66 NFDYAFMDAD   75 (125)
Q Consensus        66 ~fD~v~id~~   75 (125)
                      +||+|++|..
T Consensus       189 ~fDvIi~d~~  198 (321)
T 2pt6_A          189 TYDVIIVDSS  198 (321)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEECCc
Confidence            8999999974

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.88  E-value=5.9e-09  Score=73.16  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe-CCC--CCcEEEEecchHHHH-------------------HHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID-ARV--DHKINFIESEALSVL-------------------DQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD-~~~--~~~i~~~~gd~~~~l-------------------~~~~~~   60 (125)
                      +..+|||+|||+|..+..+++.+++ +++|+++| +..  ..+++++++|+.+..                   +.+...
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  101 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEI  101 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHhh
Confidence            3468999999999999999999874 68999999 221  257999999987542                   000000


Q ss_pred             CCCCCceeEEEEcCCC
Q 042171           61 SENEVNFDYAFMDADK   76 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~   76 (125)
                      . +..+||+|+++...
T Consensus       102 ~-~~~~fD~v~~~~~~  116 (201)
T 2plw_A          102 L-QDKKIDIILSDAAV  116 (201)
T ss_dssp             H-TTCCEEEEEECCCC
T ss_pred             c-CCCcccEEEeCCCc
Confidence            0 14689999998754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.88  E-value=5.9e-09  Score=78.74  Aligned_cols=67  Identities=15%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++.+|||||||+|..+..+++..+ ..+|+++|            .     ++ .++++++.+|+.+.++..      .+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~  162 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KN  162 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SS
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CC
Confidence            568999999999999999998765 68999999            1     12 468999999999876542      46


Q ss_pred             ceeEEEEcCCCc
Q 042171           66 NFDYAFMDADKD   77 (125)
Q Consensus        66 ~fD~v~id~~~~   77 (125)
                      +||+|++|....
T Consensus       163 ~fD~Ii~d~~~~  174 (296)
T 1inl_A          163 EFDVIIIDSTDP  174 (296)
T ss_dssp             CEEEEEEEC---
T ss_pred             CceEEEEcCCCc
Confidence            899999987543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.87  E-value=2e-09  Score=77.41  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC-----------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR-----------VDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~-----------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|..+..+++.++ +++|+++| +.           -..++.++.+|+.+......    ..++||+|+
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~----~~~~fD~V~  131 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG----IVEKVDLIY  131 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT----TCCCEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcc----cccceeEEE
Confidence            346999999999999999999988 78999999 11           12578899998875311000    136899999


Q ss_pred             EcCCCc
Q 042171           72 MDADKD   77 (125)
Q Consensus        72 id~~~~   77 (125)
                      ++...+
T Consensus       132 ~~~~~~  137 (210)
T 1nt2_A          132 QDIAQK  137 (210)
T ss_dssp             ECCCST
T ss_pred             EeccCh
Confidence            986543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.87  E-value=4.7e-09  Score=74.61  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCc-
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVN-   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~-   66 (125)
                      +..+|||+|||+|..++.++..-  ..+|+++|               .++. ++++++.+|+.+.++.+     ..++ 
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~~  125 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----QNQPH  125 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----CSSCC
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----ccCCC
Confidence            45799999999999999877652  36899999               3443 68999999998875432     1367 


Q ss_pred             eeEEEEcCC
Q 042171           67 FDYAFMDAD   75 (125)
Q Consensus        67 fD~v~id~~   75 (125)
                      ||+|++|..
T Consensus       126 fD~I~~~~~  134 (201)
T 2ift_A          126 FDVVFLDPP  134 (201)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999998654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.87  E-value=2.2e-08  Score=74.54  Aligned_cols=67  Identities=25%  Similarity=0.293  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..|+.+++.++..++|+++|               .++ .+++++.+|+.+..+.+..   ..++||
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~---~~~~fD  158 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-LNTIIINADMRKYKDYLLK---NEIFFD  158 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH---TTCCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-CcEEEEeCChHhcchhhhh---ccccCC
Confidence            456999999999999999999887459999999               355 4899999999877443211   136899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      .|++|.
T Consensus       159 ~Vl~d~  164 (274)
T 3ajd_A          159 KILLDA  164 (274)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999994

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.87  E-value=3.6e-09  Score=77.61  Aligned_cols=64  Identities=17%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++. + .++|+++|               .++.++++++.+|+.+. + +     ..++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD  116 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P-F-----RNEELD  116 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C-C-----CCCCEE
Confidence            4679999999999999999998 4 67999999               46667899999999764 3 2     257899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       117 ~i~~~~~~  124 (267)
T 3kkz_A          117 LIWSEGAI  124 (267)
T ss_dssp             EEEESSCG
T ss_pred             EEEEcCCc
Confidence            99987653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.86  E-value=2.7e-09  Score=79.37  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++.+|||||||+|.++..+++.+|++.+|+++|             .....+++++.+|+.+. + +      .++||+|
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD~v   93 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-E-L------NDKYDIA   93 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-C-C------SSCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-C-c------CCCeeEE
Confidence            567999999999999999999988668999999             12334899999999864 3 1      3689999


Q ss_pred             EEcCCCc
Q 042171           71 FMDADKD   77 (125)
Q Consensus        71 ~id~~~~   77 (125)
                      ++.....
T Consensus        94 ~~~~~l~  100 (284)
T 3gu3_A           94 ICHAFLL  100 (284)
T ss_dssp             EEESCGG
T ss_pred             EECChhh
Confidence            9976543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.86  E-value=2.3e-09  Score=78.28  Aligned_cols=67  Identities=18%  Similarity=0.329  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHH-HHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS-VLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~-~l~~~~~~~~~~~~f   67 (125)
                      ++.+|||+|||+|..++.+++..+ +.+|+++|               .++.++++++++|+.+ .+..+...  ..++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcc--cCCcc
Confidence            456999999999999999998876 68999999               4666789999999875 22222100  01579


Q ss_pred             eEEEEc
Q 042171           68 DYAFMD   73 (125)
Q Consensus        68 D~v~id   73 (125)
                      |+|+++
T Consensus       142 D~i~~n  147 (254)
T 2h00_A          142 DFCMCN  147 (254)
T ss_dssp             SEEEEC
T ss_pred             cEEEEC
Confidence            999997

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.86  E-value=1.9e-09  Score=75.69  Aligned_cols=67  Identities=15%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCC---CcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVD---HKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~---~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      .++.+|||+|||+|..++.+++..+ +.+++++|          ..+.   .+++++++|+.+.++....   ..++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE---RGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHH---TTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh---ccCcccE
Confidence            3567999999999999999999986 68999999          0111   1688999999885543111   1378999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |+++
T Consensus       105 i~~n  108 (215)
T 4dzr_A          105 IVSN  108 (215)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9985

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.86  E-value=8.8e-09  Score=75.91  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ...+|||+|||+|+.+..+|+.++++|+|+++|            +.-..++..+.+|+.+... ..   ...+++|+||
T Consensus        77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~-~~---~~~~~vDvVf  152 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK-YR---HLVEGVDGLY  152 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG-GT---TTCCCEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc-cc---cccceEEEEE
Confidence            346999999999999999999998899999999            2223579999998875311 11   1257899999


Q ss_pred             EcCCCcC
Q 042171           72 MDADKDN   78 (125)
Q Consensus        72 id~~~~~   78 (125)
                      +|...+.
T Consensus       153 ~d~~~~~  159 (233)
T 4df3_A          153 ADVAQPE  159 (233)
T ss_dssp             ECCCCTT
T ss_pred             EeccCCh
Confidence            9877654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.86  E-value=1.4e-08  Score=76.16  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-----C-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-----V-DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-----~-~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++++|||||||+|..+..+++..+ ..+|+++|            ..     + .++++++.+|+.+.++..      .
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~  149 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------T  149 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------C
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------C
Confidence            3678999999999999999998654 68999999            11     1 468999999999886653      4


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       150 ~~fD~Ii~d~~~  161 (283)
T 2i7c_A          150 NTYDVIIVDSSD  161 (283)
T ss_dssp             SCEEEEEEECCC
T ss_pred             CCceEEEEcCCC
Confidence            789999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.85  E-value=9.8e-09  Score=69.85  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++..+   +++++|               .++  +++++++|+.+.++.+...   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            567999999999999999998743   499999               233  7999999999876655321   24799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       113 ~i~~~~~  119 (171)
T 1ws6_A          113 VAFMAPP  119 (171)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.85  E-value=5e-09  Score=74.36  Aligned_cols=70  Identities=21%  Similarity=0.258  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.+..+++..++.++|+++|               .++ ++++++.+|+.+.++.       .++||
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYEP-------LAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCGG-------GCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCC-------CCCee
Confidence            456999999999999999999885468999999               234 4699999998654331       36899


Q ss_pred             EEEEcCCCcCCHH
Q 042171           69 YAFMDADKDNYCN   81 (125)
Q Consensus        69 ~v~id~~~~~~~~   81 (125)
                      +|+++......++
T Consensus       149 ~v~~~~~~~~~~~  161 (215)
T 2yxe_A          149 RIYTTAAGPKIPE  161 (215)
T ss_dssp             EEEESSBBSSCCH
T ss_pred             EEEECCchHHHHH
Confidence            9999877655543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.84  E-value=7.4e-09  Score=76.62  Aligned_cols=65  Identities=20%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++.   +.+|+++|               .++.++++++.+|+.+..+ +     ..++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~-----~~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-H-----LETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-G-----CSSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-h-----cCCCce
Confidence            4569999999999999999987   57999999               3555789999999987642 2     157899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++.....
T Consensus       139 ~v~~~~~l~  147 (285)
T 4htf_A          139 LILFHAVLE  147 (285)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECchhh
Confidence            999976543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.84  E-value=5.7e-09  Score=74.85  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|..++.+++.+++.++|+++|            +....+++++.+|+.+... +..   ..++||+|+
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~---~~~~~D~v~  148 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE-YRA---LVPKVDVIF  148 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG-GTT---TCCCEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch-hhc---ccCCceEEE
Confidence            356899999999999999999876578999999            1112689999999986421 100   135799999


Q ss_pred             EcCCCc
Q 042171           72 MDADKD   77 (125)
Q Consensus        72 id~~~~   77 (125)
                      +|....
T Consensus       149 ~~~~~~  154 (227)
T 1g8a_A          149 EDVAQP  154 (227)
T ss_dssp             ECCCST
T ss_pred             ECCCCH
Confidence            987743

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=8e-09  Score=76.34  Aligned_cols=69  Identities=12%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CC-----CCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------AR-----VDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~-----~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +..+|||+|||+|..++.+++..+ +.+|+++|             ..     +.++++++++|+.+..+......-..+
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            456999999999999999999987 68999999             11     234799999999887542210000146


Q ss_pred             ceeEEEEc
Q 042171           66 NFDYAFMD   73 (125)
Q Consensus        66 ~fD~v~id   73 (125)
                      +||+|+++
T Consensus       115 ~fD~Vv~n  122 (260)
T 2ozv_A          115 HFHHVIMN  122 (260)
T ss_dssp             CEEEEEEC
T ss_pred             CcCEEEEC
Confidence            89999986

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.84  E-value=8.2e-09  Score=74.91  Aligned_cols=66  Identities=24%  Similarity=0.280  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..+  ++|+++|               .++.++++++.+|+.+. | +     ..++||
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD  116 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F-----QNEELD  116 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S-----CTTCEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C-----CCCCEE
Confidence            346999999999999999999985  4999999               56767899999999654 3 2     257899


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      +|++......
T Consensus       117 ~v~~~~~l~~  126 (257)
T 3f4k_A          117 LIWSEGAIYN  126 (257)
T ss_dssp             EEEEESCSCC
T ss_pred             EEEecChHhh
Confidence            9999866443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.83  E-value=6.9e-09  Score=74.26  Aligned_cols=70  Identities=14%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC----CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV----DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~----~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +..+|||||||+|+.+..+++.+++.++|+++|               .++    .++++++.+|+.+..+.       .
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~  149 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------E  149 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------G
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------C
Confidence            456999999999999999999875568999999               122    35899999998754221       3


Q ss_pred             CceeEEEEcCCCcCCH
Q 042171           65 VNFDYAFMDADKDNYC   80 (125)
Q Consensus        65 ~~fD~v~id~~~~~~~   80 (125)
                      ++||+|+++......+
T Consensus       150 ~~fD~i~~~~~~~~~~  165 (226)
T 1i1n_A          150 APYDAIHVGAAAPVVP  165 (226)
T ss_dssp             CCEEEEEECSBBSSCC
T ss_pred             CCcCEEEECCchHHHH
Confidence            6799999987765543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.83  E-value=7.1e-09  Score=75.18  Aligned_cols=62  Identities=21%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..  +.+++++|               .++.++++++.+|+.+..+        .++||
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  105 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NEKCD  105 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--------CCCCC
Confidence            45699999999999999999987  47999999               4666789999999986521        37899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       106 ~V~~~~~  112 (256)
T 1nkv_A          106 VAACVGA  112 (256)
T ss_dssp             EEEEESC
T ss_pred             EEEECCC
Confidence            9998544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.82  E-value=8.9e-09  Score=77.33  Aligned_cols=59  Identities=20%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce-
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF-   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f-   67 (125)
                      +..+|||+|||+|..++.+++. + +.+|+++|               .++.++++++++|+.+.++         ++| 
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---------~~f~  191 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---------EKFA  191 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---------GGTT
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---------cccC
Confidence            3469999999999999999999 5 79999999               4666679999999987532         457 


Q ss_pred             --eEEEEc
Q 042171           68 --DYAFMD   73 (125)
Q Consensus        68 --D~v~id   73 (125)
                        |+|+++
T Consensus       192 ~~D~Ivsn  199 (284)
T 1nv8_A          192 SIEMILSN  199 (284)
T ss_dssp             TCCEEEEC
T ss_pred             CCCEEEEc
Confidence              999985

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.82  E-value=1.1e-08  Score=72.63  Aligned_cols=70  Identities=21%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC--CCCcEEEEecchHHHH--HHHhhcCC--CCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR--VDHKINFIESEALSVL--DQLLKDSE--NEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~--~~~~i~~~~gd~~~~l--~~~~~~~~--~~~~fD~v~id~~~   76 (125)
                      +..+|||+|||+|.++..+++.   .++|+++| ..  ...+++++++|+.+..  ..+.....  ..++||+|++|+..
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMA  101 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCC
T ss_pred             CCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCc
Confidence            4579999999999999999987   68999999 22  2258999999987531  11100000  01489999999764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.82  E-value=7.6e-09  Score=76.64  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=52.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+++.+.+.++++++|               .++.++++++.+|+.+.++        .++||+
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~  184 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EKDVDA  184 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CCSEEE
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--------CCccCE
Confidence            46999999999999999999976579999999               3555689999999987622        468999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|..
T Consensus       185 V~~~~~  190 (277)
T 1o54_A          185 LFLDVP  190 (277)
T ss_dssp             EEECCS
T ss_pred             EEECCc
Confidence            999754

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.81  E-value=9.3e-09  Score=81.37  Aligned_cols=71  Identities=23%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcCc------ccHHHHHHHhhCCCCCEEEEEe-----CCCCCcEEEEecchHHH--HHHHhhcCCCCCceeE
Q 042171            3 LKLKKTIEIGVF------TGYSLFLTALTIPEDGQITAID-----ARVDHKINFIESEALSV--LDQLLKDSENEVNFDY   69 (125)
Q Consensus         3 ~~~~~vLeiG~g------~G~~t~~la~~~~~~~~v~~iD-----~~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~   69 (125)
                      .++.+|||||||      +|.+++.+++...++++|+++|     ....++|+++++|+.+.  +..+..   ..++||+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~---~d~sFDl  291 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIAR---RYGPFDI  291 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHH---HHCCEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhc---ccCCccE
Confidence            467899999999      7788888887653379999999     22346899999999864  111111   0378999


Q ss_pred             EEEcCCC
Q 042171           70 AFMDADK   76 (125)
Q Consensus        70 v~id~~~   76 (125)
                      |++|+.+
T Consensus       292 VisdgsH  298 (419)
T 3sso_A          292 VIDDGSH  298 (419)
T ss_dssp             EEECSCC
T ss_pred             EEECCcc
Confidence            9999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.81  E-value=8.6e-09  Score=78.11  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++..+++++|+++|               .++ ++++++.+|+.+.++.       .++||
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPE-------FSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEECChhhcccc-------CCCeE
Confidence            456999999999999999999876458999999               355 3599999999875432       36899


Q ss_pred             EEEEcCCCcCCH
Q 042171           69 YAFMDADKDNYC   80 (125)
Q Consensus        69 ~v~id~~~~~~~   80 (125)
                      +|+++...+..+
T Consensus       147 ~Iv~~~~~~~~~  158 (317)
T 1dl5_A          147 VIFVTVGVDEVP  158 (317)
T ss_dssp             EEEECSBBSCCC
T ss_pred             EEEEcCCHHHHH
Confidence            999987765544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.80  E-value=2.9e-08  Score=77.50  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+|+. + ..+|+++|               .++.+ +++++.+|+.+.++.+...   ..+|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~f  286 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLTY  286 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCCc
Confidence            4579999999999999999985 2 35899999               45655 8999999999987765321   3589


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       287 D~Ii~DPP  294 (385)
T 2b78_A          287 DIIIIDPP  294 (385)
T ss_dssp             EEEEECCC
T ss_pred             cEEEECCC
Confidence            99999854

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=76.25  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +.++|||||||+|..++.+++.++ ..+|+++|
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvD   77 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLD   77 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEEC
Confidence            467999999999999999999987 68999999

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.80  E-value=5.4e-09  Score=75.45  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C-----------CCCCcEEEEecchHHH--HHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A-----------RVDHKINFIESEALSV--LDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~-----------~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~   69 (125)
                      ...+|||+|||+|..+.++++.+++.++|+++| +           ....+++++.+|+.+.  ++..      .++||+
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~------~~~~D~  150 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRML------IAMVDV  150 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGG------CCCEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhccc------CCcEEE
Confidence            346999999999999999999985478999999 1           1126899999999874  2322      468999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|..
T Consensus       151 V~~~~~  156 (233)
T 2ipx_A          151 IFADVA  156 (233)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999876

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.79  E-value=1.5e-08  Score=81.28  Aligned_cols=64  Identities=11%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.+|+.++..++|+++|               .++.  ++++.+|+.+..+.+      .++||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~~FD  172 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF------GTYFH  172 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH------CSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc------cccCC
Confidence            456999999999999999999998679999999               3563  999999998874433      47899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       173 ~Il~D~P  179 (464)
T 3m6w_A          173 RVLLDAP  179 (464)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999865

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.79  E-value=2e-08  Score=67.93  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCC--CCcEEEEecchHHH-----HHH-HhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARV--DHKINFIESEALSV-----LDQ-LLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~--~~~i~~~~gd~~~~-----l~~-~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||+|||+|..+..+++.++++.+++++| ...  ..+++++.+|+.+.     ++. +     +.++||+|+++.
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~D~i~~~~   96 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERV-----GDSKVQVVMSDM   96 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHH-----TTCCEEEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccC-----CCCceeEEEECC
Confidence            456999999999999999999875468999999 222  15799999999764     111 2     146899999976


Q ss_pred             CC
Q 042171           75 DK   76 (125)
Q Consensus        75 ~~   76 (125)
                      ..
T Consensus        97 ~~   98 (180)
T 1ej0_A           97 AP   98 (180)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.79  E-value=8.1e-09  Score=72.76  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+++..| +.+++++|               .++. +++++.+|+.+..+        .++||+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--------~~~~D~  135 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFDG  135 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--------cCCcCE
Confidence            57999999999999999999887 78999999               3443 49999999986521        468999


Q ss_pred             EEEcCCCcCCHHHHh
Q 042171           70 AFMDADKDNYCNYMR   84 (125)
Q Consensus        70 v~id~~~~~~~~~~~   84 (125)
                      |++.+. ..+..+++
T Consensus       136 i~~~~~-~~~~~~l~  149 (207)
T 1jsx_A          136 VISRAF-ASLNDMVS  149 (207)
T ss_dssp             EECSCS-SSHHHHHH
T ss_pred             EEEecc-CCHHHHHH
Confidence            997543 34455555

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.79  E-value=1.6e-08  Score=73.92  Aligned_cols=66  Identities=18%  Similarity=0.156  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C------------CCCCcEEEEecchHHHHHHHhhcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A------------RVDHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~------------~~~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      +..+|||||||+|..++.||+..| +.+++++|        +            ....+++++.+|+.+.++...    +
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~----~  120 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF----Y  120 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC----C
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC----C
Confidence            345899999999999999999887 78999999        0            123689999999987556421    2


Q ss_pred             CCceeEEEEcC
Q 042171           64 EVNFDYAFMDA   74 (125)
Q Consensus        64 ~~~fD~v~id~   74 (125)
                      .++||.|++..
T Consensus       121 ~~~~D~v~~~~  131 (235)
T 3ckk_A          121 KGQLTKMFFLF  131 (235)
T ss_dssp             TTCEEEEEEES
T ss_pred             CcCeeEEEEeC
Confidence            57899999854

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.78  E-value=1.4e-08  Score=81.21  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.+|+.++..++|+++|               .++ .+++++.+|+.+..+.+      .++||
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~~~Da~~l~~~~------~~~FD  177 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTNHAPAELVPHF------SGFFD  177 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEECCCHHHHHHHH------TTCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhhhc------cccCC
Confidence            456999999999999999999987679999999               456 47999999998875444      47899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       178 ~Il~DaP  184 (456)
T 3m4x_A          178 RIVVDAP  184 (456)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999975

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.78  E-value=1.3e-08  Score=75.35  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+|||+|..++.+++..+ +.+|+++|               .++ ++++++++|+.+.++        .++||
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~v~~~~~d~~~~~~--------~~~fD  178 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALA--------GQQFA  178 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGT--------TCCEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEcchhhhcc--------cCCcc
Confidence            456999999999999999999887 78999999               244 379999999987532        36899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      +|+++
T Consensus       179 ~Iv~n  183 (276)
T 2b3t_A          179 MIVSN  183 (276)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.78  E-value=8.2e-09  Score=78.58  Aligned_cols=68  Identities=15%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------C--C----------CCCcEEEEecchHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------A--R----------VDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~--~----------~~~~i~~~~gd~~~~l~~~~   58 (125)
                      +..+|||+|||+|+.++.+++.+++.++|+++|             .  +          ...+++++.+|+.+.++.+.
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~  184 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK  184 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence            456999999999999999999875579999999             1  1          23689999999987643331


Q ss_pred             hcCCCCCceeEEEEcCCC
Q 042171           59 KDSENEVNFDYAFMDADK   76 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~~   76 (125)
                           .++||+|++|...
T Consensus       185 -----~~~fD~V~~~~~~  197 (336)
T 2b25_A          185 -----SLTFDAVALDMLN  197 (336)
T ss_dssp             --------EEEEEECSSS
T ss_pred             -----CCCeeEEEECCCC
Confidence                 3579999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.77  E-value=1.6e-08  Score=72.43  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ++.+|||||||+|..+..+++..| +.+++++|            .....+++++.+|+.+. + +      .++||+|+
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~-~------~~~fD~v~  114 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-D-F------EEKYDMVV  114 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-C-C------CSCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-C-C------CCCceEEE
Confidence            567999999999999999999987 78999999            11223899999999765 2 1      37899999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +.......
T Consensus       115 ~~~~l~~~  122 (234)
T 3dtn_A          115 SALSIHHL  122 (234)
T ss_dssp             EESCGGGS
T ss_pred             EeCccccC
Confidence            97654433

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.77  E-value=2.1e-08  Score=85.35  Aligned_cols=111  Identities=12%  Similarity=0.076  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------C-----------CCCCcEEEEecchHHHHHHHhhcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------A-----------RVDHKINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~-----------~~~~~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      ++.+|||||||+|..++.|++..++..+|+++|          .           ++ .+++++++|+.+. +.      
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dL-p~------  792 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEF-DS------  792 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSC-CT------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhC-Cc------
Confidence            567999999999999999999875468999999          1           23 5899999999875 22      


Q ss_pred             CCCceeEEEEcCCCcCCHH-----HHhh-------------------h--CCC----------------------CCCcc
Q 042171           63 NEVNFDYAFMDADKDNYCN-----YMRE-------------------Q--VPD----------------------HFRGS   94 (125)
Q Consensus        63 ~~~~fD~v~id~~~~~~~~-----~~~~-------------------~--~~~----------------------~~~~~   94 (125)
                      ..++||+|++.....+.++     +++.                   +  ...                      +.-..
T Consensus       793 ~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEW  872 (950)
T 3htx_A          793 RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEW  872 (950)
T ss_dssp             TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCB
T ss_pred             ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchhhhhhhhcccccccccccccccccccccCcceee
Confidence            1578999999766554432     2220                   0  000                      00114


Q ss_pred             hHHHHHHHHHHhhcCCCeEEEEeecCCc
Q 042171           95 SKQAILDLNRSLVDDPCVQLSHVALGES  122 (125)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~lp~~~G  122 (125)
                      ..+..+++.+.+.+..+|++.+.++|+|
T Consensus       873 TReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          873 TREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            5677888889999999999999999998

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.77  E-value=1.6e-08  Score=76.97  Aligned_cols=64  Identities=25%  Similarity=0.303  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.+++.+++.++|+++|               .++ .+++++.+|+.+..+ .      .++||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D~~~~~~-~------~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGE-L------NVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGG-G------CCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECChhhccc-c------cccCC
Confidence            346999999999999999999987679999999               355 479999999987632 2      46899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       190 ~Il~d~P  196 (315)
T 1ixk_A          190 KILLDAP  196 (315)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999854

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.9e-08  Score=75.03  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEecchHHHHHHHhh-cCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIESEALSVLDQLLK-DSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~gd~~~~l~~~~~-~~~~~~~   66 (125)
                      +..+|||||||+|..+..+++.+++..+|+++|               . +...+++++++|+.+. + +.. .....++
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~~~~~~~  113 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF-K-FLGADSVDKQK  113 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC-G-GGCTTTTTSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC-C-ccccccccCCC
Confidence            567999999999999999999874479999999               1 3467999999999865 2 210 0000268


Q ss_pred             eeEEEEcCCC
Q 042171           67 FDYAFMDADK   76 (125)
Q Consensus        67 fD~v~id~~~   76 (125)
                      ||+|++....
T Consensus       114 fD~V~~~~~l  123 (299)
T 3g5t_A          114 IDMITAVECA  123 (299)
T ss_dssp             EEEEEEESCG
T ss_pred             eeEEeHhhHH
Confidence            9999997553

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.77  E-value=2.5e-08  Score=81.33  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||.|..+.+||+.   +++|++||               .+. -+|++.++++.+....+     ..++||
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~-----~~~~fD  136 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAAL-----EEGEFD  136 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHC-----CTTSCS
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhc-----cCCCcc
Confidence            5779999999999999999986   78999999               222 37999999999875543     247899


Q ss_pred             EEEE
Q 042171           69 YAFM   72 (125)
Q Consensus        69 ~v~i   72 (125)
                      +|++
T Consensus       137 ~v~~  140 (569)
T 4azs_A          137 LAIG  140 (569)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.77  E-value=2.6e-08  Score=74.37  Aligned_cols=61  Identities=7%  Similarity=-0.068  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++..+  .+|+++|               .++.++++++.+|+.+.          .++||
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD  139 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPVD  139 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CCCCS
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CCCcc
Confidence            345999999999999999999875  7899999               46767899999999754          37899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       140 ~v~~~~~~  147 (302)
T 3hem_A          140 RIVSLGAF  147 (302)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchH
Confidence            99986543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.76  E-value=2.6e-08  Score=76.50  Aligned_cols=66  Identities=18%  Similarity=0.360  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+++.   +.+|+++|               .++.+ +++++++|+.+.++.+...   .++|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~---~~~f  226 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GSTY  226 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TCCB
T ss_pred             CCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc---CCCc
Confidence            3569999999999999999985   45999999               35554 5999999999987654211   3689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       227 D~Ii~dPP  234 (332)
T 2igt_A          227 DIILTDPP  234 (332)
T ss_dssp             SEEEECCC
T ss_pred             eEEEECCc
Confidence            99999754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.75  E-value=9.5e-09  Score=72.31  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++. + +.+++++|               .++.++++++.+|+.+. + +     ..++||
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D  113 (219)
T 3dlc_A           43 TAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-I-----EDNYAD  113 (219)
T ss_dssp             CEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-S-----CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-C-----Cccccc
Confidence            3459999999999999999998 4 68999999               45667899999999764 2 2     257899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++.....
T Consensus       114 ~v~~~~~l~  122 (219)
T 3dlc_A          114 LIVSRGSVF  122 (219)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECchHh
Confidence            999976543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.75  E-value=3.5e-08  Score=68.81  Aligned_cols=72  Identities=11%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCC--------CEEEEEe-CCC--CCcEEEE-ecchHHHHHH--HhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPED--------GQITAID-ARV--DHKINFI-ESEALSVLDQ--LLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~--------~~v~~iD-~~~--~~~i~~~-~gd~~~~l~~--~~~~~~~~~~fD~   69 (125)
                      +..+|||+|||+|..++.+++.++..        ++|+++| ...  ..+++++ .+|..+....  +... .+.++||+
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~fD~  100 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEV-LPGRRADV  100 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHH-SGGGCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHh-cCCCCCcE
Confidence            45799999999999999999998743        8999999 221  2578999 9987643110  0000 01357999


Q ss_pred             EEEcCCC
Q 042171           70 AFMDADK   76 (125)
Q Consensus        70 v~id~~~   76 (125)
                      |+++...
T Consensus       101 V~~~~~~  107 (196)
T 2nyu_A          101 ILSDMAP  107 (196)
T ss_dssp             EEECCCC
T ss_pred             EEeCCCC
Confidence            9998643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.74  E-value=7.6e-09  Score=73.64  Aligned_cols=63  Identities=3%  Similarity=-0.140  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQL   57 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~   57 (125)
                      +..+|||+|||+|..+.+|++.   +.+|+++|            ...              ..+++++++|+.+..+.-
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            4679999999999999999996   57999999            221              357999999998763210


Q ss_pred             hhcCCCCCceeEEEEcCC
Q 042171           58 LKDSENEVNFDYAFMDAD   75 (125)
Q Consensus        58 ~~~~~~~~~fD~v~id~~   75 (125)
                            .++||+|++.+.
T Consensus        99 ------~~~fD~v~~~~~  110 (203)
T 1pjz_A           99 ------IGHCAAFYDRAA  110 (203)
T ss_dssp             ------HHSEEEEEEESC
T ss_pred             ------CCCEEEEEECcc
Confidence                  168999997544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.73  E-value=7.9e-09  Score=71.64  Aligned_cols=60  Identities=15%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      .+..+|||+|||+|..++.+++..    +|+++|     .....+++++++|+.+.++        .++||+|+++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~--------~~~fD~i~~n~   86 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALESHRGGNLVRADLLCSIN--------QESVDVVVFNP   86 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHTCSSSCEEECSTTTTBC--------GGGCSEEEECC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhcccCCeEEECChhhhcc--------cCCCCEEEECC
Confidence            356799999999999999999864    999999     1125789999999987422        37899999854

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.73  E-value=3.4e-08  Score=74.73  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C------CCCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A------RVDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~------~~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .++.+|||||||+|..+..+++..+ ..+|+++|            .      ....+++++.+|+.+.+...     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            3578999999999999999998654 68999999            1      12368999999999875421     14


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       168 ~~fDvIi~d~~~  179 (304)
T 3bwc_A          168 NTYDVVIIDTTD  179 (304)
T ss_dssp             TCEEEEEEECC-
T ss_pred             CceeEEEECCCC
Confidence            789999998754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.73  E-value=3.2e-08  Score=71.36  Aligned_cols=67  Identities=18%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|..++++++.++ .++|+++|            +...++++++.+|+.+....+.    ..++||+|+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~D~v~  148 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN----IVEKVDVIY  148 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT----TSCCEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc----cCccEEEEE
Confidence            356899999999999999999987 78999999            2223689999999976211010    036799999


Q ss_pred             EcCC
Q 042171           72 MDAD   75 (125)
Q Consensus        72 id~~   75 (125)
                      .+..
T Consensus       149 ~~~~  152 (230)
T 1fbn_A          149 EDVA  152 (230)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            7643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.73  E-value=1.7e-08  Score=72.95  Aligned_cols=68  Identities=15%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++.+++..+  ++|+++|               .++ .+++++.+|+...++.       ..+||
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPP-------KAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcccCCCC-------CCCcc
Confidence            456899999999999999999875  7899999               344 3599999998433221       34699


Q ss_pred             EEEEcCCCcCCHH
Q 042171           69 YAFMDADKDNYCN   81 (125)
Q Consensus        69 ~v~id~~~~~~~~   81 (125)
                      +|+++......++
T Consensus       161 ~Ii~~~~~~~~~~  173 (235)
T 1jg1_A          161 VIIVTAGAPKIPE  173 (235)
T ss_dssp             EEEECSBBSSCCH
T ss_pred             EEEECCcHHHHHH
Confidence            9999877655543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.72  E-value=2.3e-08  Score=80.41  Aligned_cols=65  Identities=12%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.+|+.++..++|+++|               .++ .+++++++|+.+..+..      .++||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~~------~~~fD  189 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAAV------PEMFD  189 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHHS------TTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhhc------cccCC
Confidence            456999999999999999999997679999999               355 47999999998763322      46899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       190 ~Il~D~P  196 (479)
T 2frx_A          190 AILLDAP  196 (479)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999854

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.72  E-value=6.4e-08  Score=70.96  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ++.+|||||||+|..+..+++  + +.+|+++|        +.-..+++++.+|+.+. + +     +.++||+|++...
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~  103 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENL-A-L-----PDKSVDGVISILA  103 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCTTEEEECCCTTSC-C-S-----CTTCBSEEEEESC
T ss_pred             CCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhccCCEEEECchhhC-C-C-----CCCCEeEEEEcch
Confidence            567999999999999999997  3 68999999        22223899999999764 3 2     2578999998543


Q ss_pred             CcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCeEEEEe
Q 042171           76 KDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHV  117 (125)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  117 (125)
                      ..+.            .+ ....++++.+.|+ ...+.....
T Consensus       104 l~~~------------~~-~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          104 IHHF------------SH-LEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             GGGC------------SS-HHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             Hhhc------------cC-HHHHHHHHHHHhC-CcEEEEEEc
Confidence            2211            12 4566777777777 544544443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.72  E-value=1.1e-08  Score=76.46  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+|+..+ . +|+++|               .++.++++++.+|+.+.++        .++||
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD  194 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIAD  194 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEE
T ss_pred             CCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCcc
Confidence            367999999999999999999854 2 899999               4676779999999987643        37899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++|...
T Consensus       195 ~Vi~~~p~  202 (278)
T 2frn_A          195 RILMGYVV  202 (278)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCch
Confidence            99997553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.72  E-value=2.2e-08  Score=72.68  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+++.+++.++++++|               . + .++++++.+|+.+. + +     +.++|
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~-~-~-----~~~~~  167 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA-E-L-----EEAAY  167 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC-C-C-----CTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc-C-C-----CCCCc
Confidence            456999999999999999999865578999999               1 5 46899999999865 1 2     14689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       168 D~v~~~~~  175 (258)
T 2pwy_A          168 DGVALDLM  175 (258)
T ss_dssp             EEEEEESS
T ss_pred             CEEEECCc
Confidence            99999754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.72  E-value=3.3e-08  Score=70.79  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++..   .+|+++|             .... +++++.+|+.+.++.       .++||+|
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~v  138 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGYEE-------EKPYDRV  138 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCCGG-------GCCEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCccccccc-------CCCccEE
Confidence            45699999999999999999974   7999999             1222 799999999874332       4689999


Q ss_pred             EEcCCCcCCH
Q 042171           71 FMDADKDNYC   80 (125)
Q Consensus        71 ~id~~~~~~~   80 (125)
                      +++......+
T Consensus       139 ~~~~~~~~~~  148 (231)
T 1vbf_A          139 VVWATAPTLL  148 (231)
T ss_dssp             EESSBBSSCC
T ss_pred             EECCcHHHHH
Confidence            9987655543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.72  E-value=5.2e-08  Score=75.95  Aligned_cols=67  Identities=21%  Similarity=0.389  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+|+. + ..+|+++|               .++.++++++.+|+.+.++.+...   ..+||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CCCCC
Confidence            5679999999999999999986 3 46999999               456458999999999987765321   46899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|..
T Consensus       292 ~Vi~dpP  298 (396)
T 2as0_A          292 IVVLDPP  298 (396)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.72  E-value=1.8e-08  Score=75.01  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+|+..+ .++|+++|               .++ ++++++.+|+.+. +.       .++||
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~~~~d~~~~-~~-------~~~~D  188 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKL-NNVIPILADNRDV-EL-------KDVAD  188 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTC-SSEEEEESCGGGC-CC-------TTCEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEECChHHc-Cc-------cCCce
Confidence            456999999999999999999876 68999999               345 4688999999876 42       36799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++|... .+..+++
T Consensus       189 ~Vi~d~p~-~~~~~l~  203 (272)
T 3a27_A          189 RVIMGYVH-KTHKFLD  203 (272)
T ss_dssp             EEEECCCS-SGGGGHH
T ss_pred             EEEECCcc-cHHHHHH
Confidence            99998764 4444444

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.71  E-value=8.9e-09  Score=76.60  Aligned_cols=65  Identities=18%  Similarity=0.171  Sum_probs=51.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C---------------------CCCCcEEEEecchHHHHHHHhhcCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A---------------------RVDHKINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~---------------------~~~~~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      ..+|||+|||+|..++.+|+.   +++|+++| .                     ++.++++++.+|+.+.++.+...  
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~--  158 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT--  158 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH--
T ss_pred             cCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc--
Confidence            468999999999999999995   57999999 1                     23356999999999987765310  


Q ss_pred             CCCceeEEEEcCC
Q 042171           63 NEVNFDYAFMDAD   75 (125)
Q Consensus        63 ~~~~fD~v~id~~   75 (125)
                       .++||+|++|..
T Consensus       159 -~~~fD~V~~dP~  170 (258)
T 2r6z_A          159 -QGKPDIVYLDPM  170 (258)
T ss_dssp             -HCCCSEEEECCC
T ss_pred             -CCCccEEEECCC
Confidence             167999999853

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.71  E-value=7.1e-09  Score=77.78  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.++.+..++.+|+++|               .++.++++++.+|+.+. + +      .++||
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD  189 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-T------REGYD  189 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-C------CSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-c------cCCeE
Confidence            467899999999999999974444478999999               45566799999999875 2 2      37899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       190 ~v~~~~~  196 (305)
T 3ocj_A          190 LLTSNGL  196 (305)
T ss_dssp             EEECCSS
T ss_pred             EEEECCh
Confidence            9998654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.71  E-value=1.8e-08  Score=72.15  Aligned_cols=60  Identities=18%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+||| +|..++.+++..  +.+|+++|               .++  +++++++|+....+ +     ..++|
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~-----~~~~f  124 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-V-----VEGTF  124 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-T-----CCSCE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-c-----ccCce
Confidence            56799999999 999999999986  58999999               334  79999999753322 2     14789


Q ss_pred             eEEEEc
Q 042171           68 DYAFMD   73 (125)
Q Consensus        68 D~v~id   73 (125)
                      |+|+++
T Consensus       125 D~I~~n  130 (230)
T 3evz_A          125 DVIFSA  130 (230)
T ss_dssp             EEEEEC
T ss_pred             eEEEEC
Confidence            999987

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.71  E-value=3.6e-08  Score=67.92  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..+..+++.   ..+++++|               .++.. +++++.+|+.+.++        .++|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  120 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKY  120 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--------cCCc
Confidence            4569999999999999999987   58999999               34533 59999999986532        4689


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|+++...
T Consensus       121 D~v~~~~~~  129 (194)
T 1dus_A          121 NKIITNPPI  129 (194)
T ss_dssp             EEEEECCCS
T ss_pred             eEEEECCCc
Confidence            999997653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.71  E-value=2.6e-08  Score=73.91  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ...+|||||||+|..+..|++.   ..+|+++|        +.-..+++++++++.+. | +     ++++||+|++...
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~-~-~-----~~~sfD~v~~~~~  108 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRHPRVTYAVAPAEDT-G-L-----PPASVDVAIAAQA  108 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCCTTEEEEECCTTCC-C-C-----CSSCEEEEEECSC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhcCCceeehhhhhhh-c-c-----cCCcccEEEEeee
Confidence            3468999999999999999986   47899999        33346899999999765 3 2     2689999999655


Q ss_pred             Cc
Q 042171           76 KD   77 (125)
Q Consensus        76 ~~   77 (125)
                      .+
T Consensus       109 ~h  110 (257)
T 4hg2_A          109 MH  110 (257)
T ss_dssp             CT
T ss_pred             hh
Confidence            43

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=98.71  E-value=1.4e-07  Score=70.36  Aligned_cols=118  Identities=13%  Similarity=0.038  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhh------CCCCCEEEEEe------C----------------------------------
Q 042171            4 KLKKTIEIGVFTGYSLFLTALT------IPEDGQITAID------A----------------------------------   37 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~------~~~~~~v~~iD------~----------------------------------   37 (125)
                      -|..|+|+|+..|.+++.++..      ...+.+|+++|      .                                  
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            4779999999999999998763      12368999999      0                                  


Q ss_pred             -----CC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC-cCCHHHHhhhC-----------CCCCCcchHHHH
Q 042171           38 -----RV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK-DNYCNYMREQV-----------PDHFRGSSKQAI   99 (125)
Q Consensus        38 -----~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~   99 (125)
                           +. .++|+++.|++.+.+|.+..+. +..+|||||+|+++ ..+..+++...           .+.... ..+++
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~-~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~-~w~G~  226 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAEN-PQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNP-KWPGE  226 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHC-TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCT-TCTHH
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhC-CCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCC-CChHH
Confidence                 01 2679999999999999864321 24579999999986 23344566321           122111 33478


Q ss_pred             HHHHHHhhcCCCeEEEEeecCCcc
Q 042171          100 LDLNRSLVDDPCVQLSHVALGESV  123 (125)
Q Consensus       100 ~~~~~~l~~~~~~~~~~lp~~~G~  123 (125)
                      ++.++......+.+...+|+..+.
T Consensus       227 ~~A~~ef~~~~~~~i~~~p~~~~~  250 (257)
T 3tos_A          227 NIAMRKVLGLDHAPLRLLPGRPAP  250 (257)
T ss_dssp             HHHHHHHTCTTSSCCEECTTCSCC
T ss_pred             HHHHHHHHhhCCCeEEEccCCCCC
Confidence            888888888889999999987654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.71  E-value=1.7e-08  Score=79.85  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C--CCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A--RVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~--~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ..+|||+|||+|..++++++.   .++|+++|               .  ++ ++++++++|+.+.++.+.     ..+|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCc
Confidence            579999999999999999986   57999999               2  66 789999999998766532     2579


Q ss_pred             eEEEEcC
Q 042171           68 DYAFMDA   74 (125)
Q Consensus        68 D~v~id~   74 (125)
                      |+||+|-
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999984

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.70  E-value=2.5e-08  Score=76.72  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++ + ..+|+++|              .++.++++++.+|+.+. + +     +.++||+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~  136 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-E-L-----PVEKVDI  136 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C-----SSSCEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-c-C-----CCCceEE
Confidence            4579999999999999999997 4 57999999              46667899999999876 2 2     2478999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++.
T Consensus       137 Iis~~  141 (349)
T 3q7e_A          137 IISEW  141 (349)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99864

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.70  E-value=8.1e-09  Score=74.23  Aligned_cols=69  Identities=13%  Similarity=0.162  Sum_probs=53.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-----CCEEEEEe---------------CCC----CCcEEEEecchHHHHHHHhhc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-----DGQITAID---------------ARV----DHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-----~~~v~~iD---------------~~~----~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      ..+|||||||+|+.+..+++..+.     .++|+++|               .+.    ..+++++.+|+.+.++.    
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----  160 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP----  160 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG----
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc----
Confidence            469999999999999999997652     36999999               110    35799999999874332    


Q ss_pred             CCCCCceeEEEEcCCCcCCH
Q 042171           61 SENEVNFDYAFMDADKDNYC   80 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~~~~~   80 (125)
                         .++||+|+++......+
T Consensus       161 ---~~~fD~I~~~~~~~~~~  177 (227)
T 1r18_A          161 ---NAPYNAIHVGAAAPDTP  177 (227)
T ss_dssp             ---GCSEEEEEECSCBSSCC
T ss_pred             ---CCCccEEEECCchHHHH
Confidence               36899999988765554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.69  E-value=3.4e-08  Score=72.27  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..  +.+|+++|               .++.++++++.+|+.+. | +     +.++||
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD  131 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-P-F-----EDASFD  131 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-S-----CTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-C-C-----CCCCcc
Confidence            45699999999999999999976  58999999               36667899999999764 3 2     247899


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      +|++......
T Consensus       132 ~v~~~~~l~~  141 (273)
T 3bus_A          132 AVWALESLHH  141 (273)
T ss_dssp             EEEEESCTTT
T ss_pred             EEEEechhhh
Confidence            9998765433

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.68  E-value=3.1e-08  Score=72.75  Aligned_cols=64  Identities=25%  Similarity=0.393  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..| +.+++++|               .++ ++++++.+|+.+. + +     +.++||
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~-~-~-----~~~~fD  107 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSL-P-F-----EDSSFD  107 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGC-C-S-----CTTCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccC-C-C-----CCCCee
Confidence            456999999999999999999976 78999999               234 4799999999864 2 2     257899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       108 ~v~~~~~l  115 (276)
T 3mgg_A          108 HIFVCFVL  115 (276)
T ss_dssp             EEEEESCG
T ss_pred             EEEEechh
Confidence            99987654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.68  E-value=4.1e-08  Score=72.56  Aligned_cols=63  Identities=8%  Similarity=-0.010  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC-------------------CCcEEEEecchHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV-------------------DHKINFIESEALS   52 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~-------------------~~~i~~~~gd~~~   52 (125)
                      +..+|||+|||+|..+.+||+.   +.+|++||            .+.                   ..+|+++++|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            5679999999999999999986   57999999            221                   2579999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEcCC
Q 042171           53 VLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus        53 ~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ..+.      ..++||+|+.-+.
T Consensus       145 l~~~------~~~~FD~V~~~~~  161 (252)
T 2gb4_A          145 LPRA------NIGKFDRIWDRGA  161 (252)
T ss_dssp             GGGG------CCCCEEEEEESSS
T ss_pred             CCcc------cCCCEEEEEEhhh
Confidence            5321      1278999997544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.68  E-value=8.8e-08  Score=74.85  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C---------------CCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A---------------RVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~---------------~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||+|||+|..++.+|+..+ ..+|+++|               .               ++. +++++++|+.+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHH
Confidence            457899999999999999999987 57899999               3               553 499999999988


Q ss_pred             HHHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171           54 LDQLLKDSENEVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        54 l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~   84 (125)
                      +...      ..+||+|++|.- ....++++
T Consensus       125 ~~~~------~~~fD~I~lDP~-~~~~~~l~  148 (378)
T 2dul_A          125 MAER------HRYFHFIDLDPF-GSPMEFLD  148 (378)
T ss_dssp             HHHS------TTCEEEEEECCS-SCCHHHHH
T ss_pred             HHhc------cCCCCEEEeCCC-CCHHHHHH
Confidence            6643      357999999863 23345555

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.67  E-value=3.5e-08  Score=71.97  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C--------CCCCcEEEEecchHHHHHHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A--------RVDHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~--------~~~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      +..+|||||||+|..++.+++..+ +.+++++|               .        ++ .+++++.+|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhc--
Confidence            456899999999999999999987 68999999               1        55 589999999987655421  


Q ss_pred             CCCCCceeEEEEcC
Q 042171           61 SENEVNFDYAFMDA   74 (125)
Q Consensus        61 ~~~~~~fD~v~id~   74 (125)
                        +.+++|.|++..
T Consensus       125 --~~~~~d~v~~~~  136 (246)
T 2vdv_E          125 --EKGQLSKMFFCF  136 (246)
T ss_dssp             --CTTCEEEEEEES
T ss_pred             --cccccCEEEEEC
Confidence              257899998754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.67  E-value=3e-08  Score=69.89  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. + ..+++++|               .++. +++++.+|+.+..         .++||
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~---------~~~fD  127 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV---------DGKFD  127 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC---------CSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC---------CCCce
Confidence            4579999999999999998874 4 57999999               3443 3999999987541         47899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|+++.....+..+++
T Consensus       128 ~i~~~~~~~~~~~~l~  143 (205)
T 3grz_A          128 LIVANILAEILLDLIP  143 (205)
T ss_dssp             EEEEESCHHHHHHHGG
T ss_pred             EEEECCcHHHHHHHHH
Confidence            9999765443344444

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.67  E-value=5.8e-08  Score=69.95  Aligned_cols=58  Identities=14%  Similarity=0.078  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+.+|||+|||+|..++.++...| ..+++++|               .|...++++  .|..+..+        .++||
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~~~D  117 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KGTYD  117 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TSEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CCCcC
Confidence            578999999999999999999887 67999999               466557777  45544422        57899


Q ss_pred             EEEE
Q 042171           69 YAFM   72 (125)
Q Consensus        69 ~v~i   72 (125)
                      +|++
T Consensus       118 vVLa  121 (200)
T 3fzg_A          118 VVFL  121 (200)
T ss_dssp             EEEE
T ss_pred             hhhH
Confidence            9996

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.67  E-value=7.6e-08  Score=67.79  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|               .++  +++++.+|+.+.          ..+||
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~----------~~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NSRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CCCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc----------CCCCC
Confidence            4579999999999999999986 3 35899999               122  799999999763          24799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|..
T Consensus       115 ~v~~~~p  121 (207)
T 1wy7_A          115 IVIMNPP  121 (207)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999864

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.67  E-value=1e-07  Score=74.34  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC-CCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV-DHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+|+.-  ..+|+++|               .++ .++++++.+|+.+.++.+...   ..+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---~~~f  294 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GEKF  294 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---CCCC
Confidence            46799999999999999999852  46899999               456 558999999999987765321   3689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       295 D~Ii~dpP  302 (396)
T 3c0k_A          295 DVIVMDPP  302 (396)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99999853

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.66  E-value=2.9e-08  Score=77.39  Aligned_cols=62  Identities=15%  Similarity=0.249  Sum_probs=50.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC--cEEEEecchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH--KINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~--~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ..+|||+|||+|..++.+++..| +.+|+++|               .++.+  +++++.+|+.+.++        .++|
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~~f  293 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF  293 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TTCE
T ss_pred             CCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CCCe
Confidence            37999999999999999999987 78999999               23332  58899999987432        4689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|+++..
T Consensus       294 D~Ii~npp  301 (375)
T 4dcm_A          294 NAVLCNPP  301 (375)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99998644

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.66  E-value=4.1e-08  Score=76.83  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.+.|||||||+|..++.+|++ + ..+|++||              .++.++|+++++++.+.  .+      .++||+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe~~Dv  152 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PEQVDA  152 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee--cC------CccccE
Confidence            5678999999999999988876 2 35899999              57889999999999876  22      468999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |++.
T Consensus       153 ivsE  156 (376)
T 4hc4_A          153 IVSE  156 (376)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            9974

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.66  E-value=1.7e-08  Score=71.61  Aligned_cols=67  Identities=21%  Similarity=0.367  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..+..+++..++..+++++|               .++ ++++++.+|+.+. + +     ..++||
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~-~-~-----~~~~fD  108 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKI-P-L-----PDNTVD  108 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECBTTBC-S-S-----CSSCEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEecccccC-C-C-----CCCCee
Confidence            456999999999999999999975578999999               234 3799999999764 2 2     257899


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      +|++......
T Consensus       109 ~v~~~~~l~~  118 (219)
T 3dh0_A          109 FIFMAFTFHE  118 (219)
T ss_dssp             EEEEESCGGG
T ss_pred             EEEeehhhhh
Confidence            9999766443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.65  E-value=3.4e-08  Score=73.22  Aligned_cols=63  Identities=14%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+++.+.++++|+++|               . +. ++++++.+|+.+.++        .++|
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~--------~~~f  180 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS--------DQMY  180 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC--------SCCE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc--------CCCc
Confidence            346999999999999999999854478999999               2 42 689999999986322        4689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|+++..
T Consensus       181 D~Vi~~~~  188 (275)
T 1yb2_A          181 DAVIADIP  188 (275)
T ss_dssp             EEEEECCS
T ss_pred             cEEEEcCc
Confidence            99999654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.65  E-value=6.6e-08  Score=75.13  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++ + ..+|+++|              .++.++++++++|+.+..  +      .++||+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~D~  132 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS--L------PEKVDV  132 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SSCEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CCcceE
Confidence            5679999999999999999987 3 35999999              456678999999998652  2      378999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++.
T Consensus       133 Iv~~~  137 (376)
T 3r0q_C          133 IISEW  137 (376)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99965

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.65  E-value=5e-08  Score=68.75  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|..+..+++.   +.+++++|           .+. .+++++.+|+.+..        ..++||+|++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~d~~~~~--------~~~~~D~v~~  113 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGRHGL-DNVEFRQQDLFDWT--------PDRQWDAVFF  113 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGGGCC-TTEEEEECCTTSCC--------CSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHhcCC-CCeEEEecccccCC--------CCCceeEEEE
Confidence            3469999999999999999998   57999999           222 67999999998661        1578999999


Q ss_pred             cCCCcC
Q 042171           73 DADKDN   78 (125)
Q Consensus        73 d~~~~~   78 (125)
                      ......
T Consensus       114 ~~~l~~  119 (218)
T 3ou2_A          114 AHWLAH  119 (218)
T ss_dssp             ESCGGG
T ss_pred             echhhc
Confidence            765443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.64  E-value=1.5e-08  Score=72.86  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++.   +.+|+++|               .+...+++++.+|+.+..+        ..+||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--------TELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--------SSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--------CCCee
Confidence            4569999999999999999762   68999999               1244679999999987521        46899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       135 ~v~~~~~l  142 (235)
T 3lcc_A          135 LIFDYVFF  142 (235)
T ss_dssp             EEEEESST
T ss_pred             EEEEChhh
Confidence            99986554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.64  E-value=3.7e-08  Score=74.06  Aligned_cols=63  Identities=10%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..++.+++..  +.+|+++|               .++.++++++.+|+.+. + +     ..++||
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD  187 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-F-----DKGAVT  187 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-C-----CCCCEe
Confidence            35699999999999999999976  47999999               45667899999999764 3 2     247899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       188 ~V~~~~~  194 (312)
T 3vc1_A          188 ASWNNES  194 (312)
T ss_dssp             EEEEESC
T ss_pred             EEEECCc
Confidence            9998644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.64  E-value=1.3e-07  Score=79.15  Aligned_cols=64  Identities=22%  Similarity=0.337  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++|||+|||+|..++.+++. + ..+|+++|               .++. ++++++++|+.+.++..      .++|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~~f  610 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------NEQF  610 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CCCE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------CCCc
Confidence            4679999999999999999984 2 35799999               5665 58999999999987753      4789


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       611 D~Ii~DPP  618 (703)
T 3v97_A          611 DLIFIDPP  618 (703)
T ss_dssp             EEEEECCC
T ss_pred             cEEEECCc
Confidence            99999864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.64  E-value=8.8e-08  Score=67.33  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +..+|||+|||+|..++.+++. + ..+|+++|          .... +++++++|+.+.          .++||+|+++
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~d~~~~----------~~~~D~v~~~  117 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG-GVNFMVADVSEI----------SGKYDTWIMN  117 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT-TSEEEECCGGGC----------CCCEEEEEEC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC-CCEEEECcHHHC----------CCCeeEEEEC
Confidence            5679999999999999999987 3 46899999          1122 799999999863          2579999998


Q ss_pred             CC
Q 042171           74 AD   75 (125)
Q Consensus        74 ~~   75 (125)
                      ..
T Consensus       118 ~p  119 (200)
T 1ne2_A          118 PP  119 (200)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.64  E-value=9e-08  Score=75.26  Aligned_cols=73  Identities=16%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCc-EEEEecchHHHHH-HHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK-INFIESEALSVLD-QLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~-i~~~~gd~~~~l~-~~~~~~~~~~~f   67 (125)
                      ..+|||++||+|..++.+|+..+..++|+++|               .++.++ ++++.+|+.+.+. .+      ..+|
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~f  126 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFGF  126 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSCE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCCC
Confidence            46899999999999999999875236899999               577666 9999999998876 54      3679


Q ss_pred             eEEEEcCCCcCCHHHHh
Q 042171           68 DYAFMDADKDNYCNYMR   84 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~   84 (125)
                      |+|++|. .....++++
T Consensus       127 D~V~lDP-~g~~~~~l~  142 (392)
T 3axs_A          127 DYVDLDP-FGTPVPFIE  142 (392)
T ss_dssp             EEEEECC-SSCCHHHHH
T ss_pred             cEEEECC-CcCHHHHHH
Confidence            9999998 333344554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.64  E-value=5.6e-08  Score=74.05  Aligned_cols=67  Identities=21%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.||+.+++.++|+++|               .++ .+++++.+|+.+..+...    ...+||
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~----~~~~fD  176 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDP----RYHEVH  176 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCG----GGTTEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCcccc----ccCCCC
Confidence            346999999999999999999886579999999               455 579999999987533210    015799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       177 ~Vl~D~P  183 (309)
T 2b9e_A          177 YILLDPS  183 (309)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999854

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.63  E-value=1.7e-08  Score=72.63  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCC-CCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSEN-EVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~-~~~fD~v~id   73 (125)
                      +..+|||||||+|..+..+++.   +.+|+++|         .....+++++.+|+.+.+|.      . .++||+|++.
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~------~~~~~fD~v~~~  118 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPA------GLGAPFGLIVSR  118 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCT------TCCCCEEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCC------cCCCCEEEEEeC
Confidence            4679999999999999999987   57999999         11135799999999655442      2 4789999997


Q ss_pred             CCC
Q 042171           74 ADK   76 (125)
Q Consensus        74 ~~~   76 (125)
                      ...
T Consensus       119 ~~~  121 (226)
T 3m33_A          119 RGP  121 (226)
T ss_dssp             SCC
T ss_pred             CCH
Confidence            443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.63  E-value=5.7e-08  Score=74.11  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++ + ..+|+++|              .++.++|+++.+|+.+. + +     +.++||+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~  108 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-H-L-----PFPKVDI  108 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SSSCEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-c-C-----CCCcccE
Confidence            4679999999999999999986 3 46999999              46667899999999865 2 2     1478999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++.
T Consensus       109 Ivs~~  113 (328)
T 1g6q_1          109 IISEW  113 (328)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99863

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.63  E-value=4.1e-08  Score=72.32  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-C-CCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-R-VDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +..+|||+|||+|..++.+++.+.+.++++++|               . + +.++++++.+|+.+. + +     +.++
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~-~-----~~~~  171 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-E-L-----PDGS  171 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-C-C-----CTTC
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-C-C-----CCCc
Confidence            346999999999999999999875579999999               1 3 357899999999865 1 2     1468


Q ss_pred             eeEEEEcCC
Q 042171           67 FDYAFMDAD   75 (125)
Q Consensus        67 fD~v~id~~   75 (125)
                      ||+|+++..
T Consensus       172 ~D~v~~~~~  180 (280)
T 1i9g_A          172 VDRAVLDML  180 (280)
T ss_dssp             EEEEEEESS
T ss_pred             eeEEEECCc
Confidence            999999764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.62  E-value=6.8e-08  Score=74.12  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++ + ..+|+++|              .++.++++++.+|+.+. + +     +.++||+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~  134 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-H-L-----PVEKVDV  134 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SCSCEEE
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-c-C-----CCCcEEE
Confidence            4679999999999999999987 3 46999999              45667899999999865 2 2     1478999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++.
T Consensus       135 Ivs~~  139 (340)
T 2fyt_A          135 IISEW  139 (340)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.62  E-value=7.6e-08  Score=73.29  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +.+|||||||+|..+..+++..| +.+++++|              .++.++++++.+|..+..+..      ..+||+|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~v  252 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADVV  252 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccEE
Confidence            67999999999999999999998 68999999              356678999999998653212      3569999


Q ss_pred             EEcCCCcC
Q 042171           71 FMDADKDN   78 (125)
Q Consensus        71 ~id~~~~~   78 (125)
                      ++....+.
T Consensus       253 ~~~~vlh~  260 (352)
T 3mcz_A          253 MLNDCLHY  260 (352)
T ss_dssp             EEESCGGG
T ss_pred             EEeccccc
Confidence            99655443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.62  E-value=2.8e-08  Score=71.07  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|..+..+++..   .+|+++|          .....+++++.+|+.+..        ..++||+|++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--------~~~~fD~v~~~  110 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--------LPRRYDNIVLT  110 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--------CSSCEEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--------cCCcccEEEEh
Confidence            46789999999999999999864   4799999          112228999999998762        15789999986


Q ss_pred             CCC
Q 042171           74 ADK   76 (125)
Q Consensus        74 ~~~   76 (125)
                      ...
T Consensus       111 ~~l  113 (250)
T 2p7i_A          111 HVL  113 (250)
T ss_dssp             SCG
T ss_pred             hHH
Confidence            553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.62  E-value=1.2e-07  Score=73.67  Aligned_cols=64  Identities=20%  Similarity=0.362  Sum_probs=52.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+|+.   ..+|+++|               .++. +++++.+|+.+.++.+...   ..+||+
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~---~~~fD~  282 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---GERFDL  282 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---TCCEEE
T ss_pred             CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhc---CCCeeE
Confidence            468999999999999999997   47899999               4553 4999999999987765321   468999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|..
T Consensus       283 Ii~dpP  288 (382)
T 1wxx_A          283 VVLDPP  288 (382)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.62  E-value=2.8e-08  Score=71.78  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..+++.   +.+|+++|      .....+++++.+|+.+.+..+     ..++||+|++....
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~-----~~~~fD~i~~~~~l  111 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSL-----PDKYLDGVMISHFV  111 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTS-----CTTCBSEEEEESCG
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhc-----CCCCeeEEEECCch
Confidence            4579999999999999999987   56899999      111234899999999875433     25789999986543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.62  E-value=3.7e-08  Score=69.77  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++.   ..+++++|            ..-..+++++.+|+.+..+        .++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--------~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFST--------AELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCC--------SCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCC--------CCCccEEE
Confidence            3568999999999999999987   46899999            1222479999999987631        57899999


Q ss_pred             EcCCC
Q 042171           72 MDADK   76 (125)
Q Consensus        72 id~~~   76 (125)
                      +....
T Consensus       120 ~~~~l  124 (216)
T 3ofk_A          120 VAEVL  124 (216)
T ss_dssp             EESCG
T ss_pred             EccHH
Confidence            97554

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.62  E-value=1.6e-08  Score=73.26  Aligned_cols=66  Identities=18%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC---------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA---------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~---------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ++.+|||||||+|..+..+++..| +++++++|.         ....+++++.+|+.+. + .      .++||+|++..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~-~-~------~~~fD~v~~~~  103 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRLPNTNFGKADLATW-K-P------AQKADLLYANA  103 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTC-C-C------SSCEEEEEEES
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhc-C-c------cCCcCEEEEeC
Confidence            457999999999999999999886 789999991         1135799999999765 2 1      47899999976


Q ss_pred             CCcC
Q 042171           75 DKDN   78 (125)
Q Consensus        75 ~~~~   78 (125)
                      ....
T Consensus       104 ~l~~  107 (259)
T 2p35_A          104 VFQW  107 (259)
T ss_dssp             CGGG
T ss_pred             chhh
Confidence            5443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.61  E-value=5.5e-08  Score=75.48  Aligned_cols=63  Identities=27%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++..+ .++|+++|               +++.++++++++|+.+. +.      ..++||
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~-~~------~~~~fD  288 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL-SQ------YVDSVD  288 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG-GG------TCSCEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC-Cc------ccCCcC
Confidence            456899999999999999998765 57999999               56767899999999876 32      147899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++|.
T Consensus       289 ~Ii~np  294 (373)
T 3tm4_A          289 FAISNL  294 (373)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.61  E-value=3.5e-08  Score=73.23  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..  +.+++++|               .++.++++++.+|+.+. | +     +.++||
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD  152 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNSYD  152 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCCCEe
Confidence            45699999999999999999986  36999999               35667899999999764 3 2     257899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++.....
T Consensus       153 ~v~~~~~l~  161 (297)
T 2o57_A          153 FIWSQDAFL  161 (297)
T ss_dssp             EEEEESCGG
T ss_pred             EEEecchhh
Confidence            999875543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.60  E-value=1.3e-07  Score=71.82  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...+|||+|||+|..++.+++.++ +++|+++|             ....++++++++|..+....+...  ...+||.|
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~--g~~~~D~V  102 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL--GIEKVDGI  102 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT--TCSCEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc--CCCCCCEE
Confidence            346899999999999999999987 79999999             112268999999987653222210  12579999


Q ss_pred             EEcCCC
Q 042171           71 FMDADK   76 (125)
Q Consensus        71 ~id~~~   76 (125)
                      ++|...
T Consensus       103 l~D~gv  108 (301)
T 1m6y_A          103 LMDLGV  108 (301)
T ss_dssp             EEECSC
T ss_pred             EEcCcc
Confidence            998754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.60  E-value=9.3e-08  Score=69.27  Aligned_cols=67  Identities=21%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++..  +.+|+++|            .....+++++.+|+.+. + +     +.++||+|+
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~  125 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-E-F-----PENNFDLIY  125 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-C-C-----CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-C-C-----CCCcEEEEe
Confidence            45699999999999999999976  57999999            11116899999999865 2 2     257899999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +.......
T Consensus       126 ~~~~l~~~  133 (266)
T 3ujc_A          126 SRDAILAL  133 (266)
T ss_dssp             EESCGGGS
T ss_pred             HHHHHHhc
Confidence            97654443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.60  E-value=1.6e-08  Score=75.51  Aligned_cols=61  Identities=11%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C---------------------C-CCCcEEEEecchHHHHHHHhhcCC
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-A---------------------R-VDHKINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~---------------------~-~~~~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      .+|||+|||+|..++++|+.   +++|+++| .                     + +.++++++++|+.+.++.+     
T Consensus        90 ~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-----  161 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-----
Confidence            68999999999999999997   57899999 0                     1 2257999999999887654     


Q ss_pred             CCCceeEEEEcCC
Q 042171           63 NEVNFDYAFMDAD   75 (125)
Q Consensus        63 ~~~~fD~v~id~~   75 (125)
                       ..+||+||+|-.
T Consensus       162 -~~~fDvV~lDP~  173 (258)
T 2oyr_A          162 -TPRPQVVYLDPM  173 (258)
T ss_dssp             -SSCCSEEEECCC
T ss_pred             -cccCCEEEEcCC
Confidence             347999999854

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.60  E-value=1.1e-07  Score=72.95  Aligned_cols=62  Identities=21%  Similarity=0.281  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.++++ + ..+|+++|              .++.++++++.+|+.+. + +      .++||+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~------~~~~D~  119 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-L------PEQVDI  119 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C------SSCEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-C-C------CCceeE
Confidence            5679999999999999999986 3 46999999              35667899999999865 2 2      367999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++...
T Consensus       120 Ivs~~~  125 (348)
T 2y1w_A          120 IISEPM  125 (348)
T ss_dssp             EEECCC
T ss_pred             EEEeCc
Confidence            999743

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.59  E-value=1.6e-07  Score=72.73  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=55.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCC-------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSE-------   62 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~-------   62 (125)
                      ..+|||+|||+|..++.+|+.   ..+|+++|               .++ ++++++.+|+.+.++.+.....       
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~  289 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGI  289 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhcccccccccc
Confidence            468999999999999999985   46899999               455 5899999999998776531100       


Q ss_pred             --CCCceeEEEEcCCCcC-CHHHHh
Q 042171           63 --NEVNFDYAFMDADKDN-YCNYMR   84 (125)
Q Consensus        63 --~~~~fD~v~id~~~~~-~~~~~~   84 (125)
                        +..+||+|++|-.... ....++
T Consensus       290 ~~~~~~fD~Vv~dPPr~g~~~~~~~  314 (369)
T 3bt7_A          290 DLKSYQCETIFVDPPRSGLDSETEK  314 (369)
T ss_dssp             CGGGCCEEEEEECCCTTCCCHHHHH
T ss_pred             ccccCCCCEEEECcCccccHHHHHH
Confidence              0037999999865432 334444

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.59  E-value=6.1e-08  Score=74.69  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHH-HHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVL-DQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l-~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..++++.| +.+++++|              .++.++|+++.+|..+.. | +      .++||
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------p~~~D  250 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F------PTGFD  250 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHST-TCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C------CCCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCC-C------CCCcC
Confidence            568999999999999999999988 78999999              345578999999987641 1 1      25799


Q ss_pred             EEEEcCCCcCC
Q 042171           69 YAFMDADKDNY   79 (125)
Q Consensus        69 ~v~id~~~~~~   79 (125)
                      +|++....+.+
T Consensus       251 ~v~~~~vlh~~  261 (363)
T 3dp7_A          251 AVWMSQFLDCF  261 (363)
T ss_dssp             EEEEESCSTTS
T ss_pred             EEEEechhhhC
Confidence            99986654433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.58  E-value=1.3e-07  Score=69.88  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..+..+++.   +.+|+++|               .++  +++++.+|+.+...        .++||
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cCCcc
Confidence            5679999999999999999987   56999999               233  89999999986521        47899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       187 ~i~~~~~  193 (286)
T 3m70_A          187 FIVSTVV  193 (286)
T ss_dssp             EEEECSS
T ss_pred             EEEEccc
Confidence            9998764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.58  E-value=1.5e-07  Score=69.45  Aligned_cols=60  Identities=5%  Similarity=-0.036  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..+  .+|+++|               .++.++++++.+|+.+.          .++||
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~~fD  131 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DEPVD  131 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCS
T ss_pred             CcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----------CCCee
Confidence            346999999999999999997664  5999999               35567899999998643          26799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++...
T Consensus       132 ~v~~~~~  138 (287)
T 1kpg_A          132 RIVSIGA  138 (287)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCc
Confidence            9998754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.57  E-value=1.5e-07  Score=70.61  Aligned_cols=61  Identities=8%  Similarity=-0.027  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..  +.+|+++|               .++.++++++.+|+.+.          .++||
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD  157 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVD  157 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCS
T ss_pred             CcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----------CCCcC
Confidence            35699999999999999999886  46999999               35667899999998643          26799


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       158 ~v~~~~~l  165 (318)
T 2fk8_A          158 RIVSIEAF  165 (318)
T ss_dssp             EEEEESCG
T ss_pred             EEEEeChH
Confidence            99987543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.57  E-value=4.9e-08  Score=70.49  Aligned_cols=66  Identities=9%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC----CCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV----DHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~----~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ++.+|||||||+|..+..+++..  ..+++++|          ...    ..+++++.+|+.+. + +     ..++||+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~  149 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-T-P-----EPDSYDV  149 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-C-C-----CSSCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc-C-C-----CCCCEEE
Confidence            46799999999999999988875  46999999          111    24699999998764 2 1     1468999


Q ss_pred             EEEcCCCcC
Q 042171           70 AFMDADKDN   78 (125)
Q Consensus        70 v~id~~~~~   78 (125)
                      |+++.....
T Consensus       150 v~~~~~l~~  158 (241)
T 2ex4_A          150 IWIQWVIGH  158 (241)
T ss_dssp             EEEESCGGG
T ss_pred             EEEcchhhh
Confidence            999865433

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.56  E-value=1.1e-07  Score=68.26  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|..+..+++.   +.+++++|           .....+++++.+|+.+. + +     +.++||+|++
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~  122 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-P-F-----ENEQFEAIMA  122 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-S-S-----CTTCEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-C-C-----CCCCccEEEE
Confidence            4679999999999999999987   57999999           12346899999999864 2 2     2578999998


Q ss_pred             cCCCc
Q 042171           73 DADKD   77 (125)
Q Consensus        73 d~~~~   77 (125)
                      .....
T Consensus       123 ~~~l~  127 (242)
T 3l8d_A          123 INSLE  127 (242)
T ss_dssp             ESCTT
T ss_pred             cChHh
Confidence            76544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.56  E-value=8.3e-08  Score=69.94  Aligned_cols=63  Identities=10%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++..   .+|+++|               .++ .+++++.+|+.+. | +     +.++||
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l-~-~-----~~~~fD  105 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-F-----TDERFH  105 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-S-----CTTCEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhC-C-C-----CCCCEE
Confidence            46799999999999999999874   4899999               233 4799999999764 3 2     257899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++.....
T Consensus       106 ~V~~~~~l~  114 (260)
T 1vl5_A          106 IVTCRIAAH  114 (260)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEhhhhH
Confidence            999876543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.55  E-value=1.1e-07  Score=73.84  Aligned_cols=73  Identities=12%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------C----------C-CC-CcEEEEecchHHHHHHHhhcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------A----------R-VD-HKINFIESEALSVLDQLLKDS   61 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~----------~-~~-~~i~~~~gd~~~~l~~~~~~~   61 (125)
                      +..+|||||||+|..++.+++..+++++|+++|          .          | +. .+++++++|+.+... +....
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~-~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT-AEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG-CBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh-cccCC
Confidence            467999999999999999999885578999999          1          2 22 689999999986521 00000


Q ss_pred             CCCCceeEEEEcCCCc
Q 042171           62 ENEVNFDYAFMDADKD   77 (125)
Q Consensus        62 ~~~~~fD~v~id~~~~   77 (125)
                      -+.++||+|++.....
T Consensus       162 ~~~~~fD~V~~~~~l~  177 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCN  177 (383)
T ss_dssp             CCTTCEEEEEEESCGG
T ss_pred             CCCCCEEEEEEccchh
Confidence            0257899999976543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.55  E-value=1.2e-07  Score=68.38  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..++.+++.   .++++++|               .++.++++++.+|+.+.+.       ...+||
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~D  160 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-------PEGIFH  160 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-------CTTCBS
T ss_pred             CCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-------CCCccc
Confidence            4569999999999999999998   58999999               3555789999999986531       136799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       161 ~v~~~~~  167 (248)
T 2yvl_A          161 AAFVDVR  167 (248)
T ss_dssp             EEEECSS
T ss_pred             EEEECCc
Confidence            9999654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.55  E-value=1.4e-07  Score=72.35  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..| +.+++++|              .++.++|+++.+|..+.+|         ..||+
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~D~  251 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLP---------VTADV  251 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---------CCEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---------CCCCE
Confidence            457999999999999999999987 78999999              4566789999999875322         34999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++....+.+
T Consensus       252 v~~~~vl~~~  261 (374)
T 1qzz_A          252 VLLSFVLLNW  261 (374)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEeccccCC
Confidence            9997654433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.55  E-value=2e-07  Score=68.54  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++. .  .+|+++|               .++.  ++++.+|+.+.++        .++||
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~~fD  186 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FGPFD  186 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GCCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CCCCC
Confidence            4679999999999999998885 2  3999999               2332  8999999987532        36899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|+++...+....+++
T Consensus       187 ~Vv~n~~~~~~~~~l~  202 (254)
T 2nxc_A          187 LLVANLYAELHAALAP  202 (254)
T ss_dssp             EEEEECCHHHHHHHHH
T ss_pred             EEEECCcHHHHHHHHH
Confidence            9998754333333333

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.54  E-value=1.6e-07  Score=69.88  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC--------CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV--------DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~--------~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++++|||||||+|+.+..+++. +  .+|+++|          ..+        .++++++.+|+.+.+          +
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~  138 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------K  138 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------C
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------h
Confidence            5789999999999999999987 4  8999999          112        358999999997652          4


Q ss_pred             ceeEEEEcCCC
Q 042171           66 NFDYAFMDADK   76 (125)
Q Consensus        66 ~fD~v~id~~~   76 (125)
                      +||+|++|...
T Consensus       139 ~fD~Ii~d~~d  149 (262)
T 2cmg_A          139 KYDLIFCLQEP  149 (262)
T ss_dssp             CEEEEEESSCC
T ss_pred             hCCEEEECCCC
Confidence            69999999754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.54  E-value=2.6e-07  Score=65.58  Aligned_cols=63  Identities=25%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC----CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV----DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~----~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +..+|||||||+|..+..+++.   +.+++++|               .++    ..+++++.+|+.+. + +     ..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~   99 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S-F-----HD   99 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C-S-----CT
T ss_pred             CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C-C-----CC
Confidence            4679999999999999999987   57999999               122    23789999998754 2 2     25


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++....
T Consensus       100 ~~~D~v~~~~~l  111 (235)
T 3sm3_A          100 SSFDFAVMQAFL  111 (235)
T ss_dssp             TCEEEEEEESCG
T ss_pred             CceeEEEEcchh
Confidence            789999986543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.53  E-value=1e-07  Score=69.03  Aligned_cols=65  Identities=18%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++.   +.+++++|            . +...+++++.+|+.+. + +     ..++||+|
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v  108 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-P-L-----PDESVHGV  108 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-C-S-----CTTCEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-C-C-----CCCCeeEE
Confidence            4579999999999999999986   57999999            1 2346899999999754 3 2     25789999


Q ss_pred             EEcCCCcC
Q 042171           71 FMDADKDN   78 (125)
Q Consensus        71 ~id~~~~~   78 (125)
                      ++......
T Consensus       109 ~~~~~l~~  116 (263)
T 2yqz_A          109 IVVHLWHL  116 (263)
T ss_dssp             EEESCGGG
T ss_pred             EECCchhh
Confidence            99765433

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.53  E-value=2e-07  Score=67.55  Aligned_cols=63  Identities=10%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++..+  .+++++|            .. ..+++++.+|+.+. + +     ..++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~-~-~-----~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDI-A-I-----EPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGC-C-C-----CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhC-C-C-----CCCCeEEEE
Confidence            567999999999999999998743  3999999            22 46899999999754 3 2     257899999


Q ss_pred             EcCCC
Q 042171           72 MDADK   76 (125)
Q Consensus        72 id~~~   76 (125)
                      +....
T Consensus       114 ~~~~l  118 (253)
T 3g5l_A          114 SSLAL  118 (253)
T ss_dssp             EESCG
T ss_pred             Echhh
Confidence            87643

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.53  E-value=1.2e-07  Score=71.76  Aligned_cols=64  Identities=14%  Similarity=0.067  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..++++.| +.+++++|              .++.++|+++.+|..+.+         ..+||+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D~  238 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAGG  238 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCcE
Confidence            357999999999999999999998 78999999              467789999999997332         137999


Q ss_pred             EEEcCCCc
Q 042171           70 AFMDADKD   77 (125)
Q Consensus        70 v~id~~~~   77 (125)
                      |++-...+
T Consensus       239 v~~~~vlh  246 (332)
T 3i53_A          239 YVLSAVLH  246 (332)
T ss_dssp             EEEESCGG
T ss_pred             EEEehhhc
Confidence            99865443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.53  E-value=8.8e-08  Score=67.19  Aligned_cols=62  Identities=11%  Similarity=0.012  Sum_probs=49.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ..+|||||||+|..+..+++.   +.+++++|         .....+++++.+|+.+. + +     ..++||+|++...
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTHPSVTFHHGTITDL-S-D-----SPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGG-G-G-----SCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCCCCeEEeCccccc-c-c-----CCCCeEEEEehhh
Confidence            578999999999999999987   56899999         11125799999999875 3 2     2578999999765


Q ss_pred             C
Q 042171           76 K   76 (125)
Q Consensus        76 ~   76 (125)
                      .
T Consensus       112 l  112 (203)
T 3h2b_A          112 L  112 (203)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.53  E-value=1.3e-07  Score=67.11  Aligned_cols=62  Identities=11%  Similarity=0.025  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C-----------------CCCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A-----------------RVDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~-----------------~~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +..+|||||||+|..+..+++..| +++|+++| +                 .-.++++++++|+.+. |.      ..+
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-~~------~~~   98 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-PP------LSG   98 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-CS------CCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-CC------CCC
Confidence            456899999999999999999887 79999999 0                 1114799999999874 32      134


Q ss_pred             ceeEEEEcC
Q 042171           66 NFDYAFMDA   74 (125)
Q Consensus        66 ~fD~v~id~   74 (125)
                      + |.|++..
T Consensus        99 ~-d~v~~~~  106 (218)
T 3mq2_A           99 V-GELHVLM  106 (218)
T ss_dssp             E-EEEEEES
T ss_pred             C-CEEEEEc
Confidence            4 7777543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.52  E-value=3.2e-07  Score=72.04  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||+|||+|..++.+|+.   +.+|+++|               .++..  ++.++|+.+.++.+      .+.||+
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD~  283 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFHH  283 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEEE
T ss_pred             CCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCCE
Confidence            679999999999999999986   45699999               34543  45699999887654      234999


Q ss_pred             EEEcCC
Q 042171           70 AFMDAD   75 (125)
Q Consensus        70 v~id~~   75 (125)
                      |++|..
T Consensus       284 Ii~dpP  289 (393)
T 4dmg_A          284 VLLDPP  289 (393)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999864

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.52  E-value=1.6e-07  Score=70.50  Aligned_cols=59  Identities=8%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCC--------CC------cEEEE--ecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARV--------DH------KINFI--ESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~--------~~------~i~~~--~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +..+|||+|||+|.++..+++.    ++|+++| ...        ..      +++++  ++|+.+. |        .++
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~~  148 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PFQ  148 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CCC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CCC
Confidence            3468999999999999999986    6899999 111        11      68899  8998763 2        468


Q ss_pred             eeEEEEcCC
Q 042171           67 FDYAFMDAD   75 (125)
Q Consensus        67 fD~v~id~~   75 (125)
                      ||+|++|..
T Consensus       149 fD~Vvsd~~  157 (276)
T 2wa2_A          149 ADTVLCDIG  157 (276)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEECCC
Confidence            999999876

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.52  E-value=1.5e-07  Score=68.84  Aligned_cols=67  Identities=19%  Similarity=0.230  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC--------------------CCCcEEEEecc-hHH-HHHHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR--------------------VDHKINFIESE-ALS-VLDQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~--------------------~~~~i~~~~gd-~~~-~l~~~~~~   60 (125)
                      +..+|||||||+|..+..+++..+++++|+++| +.                    +.++++++.+| ... .+| +   
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~---  118 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-I---  118 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-G---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-C---
Confidence            456999999999999999999875468999999 22                    22579999998 221 122 2   


Q ss_pred             CCCCCceeEEEEcCCC
Q 042171           61 SENEVNFDYAFMDADK   76 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~   76 (125)
                        ..++||+|++....
T Consensus       119 --~~~~fD~v~~~~~l  132 (275)
T 3bkx_A          119 --ADQHFDRVVLAHSL  132 (275)
T ss_dssp             --TTCCCSEEEEESCG
T ss_pred             --CCCCEEEEEEccch
Confidence              14789999986553

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.52  E-value=1.7e-07  Score=74.13  Aligned_cols=74  Identities=9%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+|+.   ..+|+++|               .++ .+++++.+|+.+.++.+..   ..++||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l~~~~~---~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPW---AKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGG---GTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHhhhhhh---hcCCCC
Confidence            4569999999999999999987   58999999               345 4899999999875432110   146799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++|-........++
T Consensus       359 ~Vv~dPPr~g~~~~~~  374 (433)
T 1uwv_A          359 KVLLDPARAGAAGVMQ  374 (433)
T ss_dssp             EEEECCCTTCCHHHHH
T ss_pred             EEEECCCCccHHHHHH
Confidence            9999866544444444

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.50  E-value=1.5e-07  Score=70.15  Aligned_cols=58  Identities=10%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCC--------CC------cEEEE--ecchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARV--------DH------KINFI--ESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~--------~~------~i~~~--~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ..+|||+|||+|.++..+++.    ++|++|| ...        ..      +++++  ++|+.+. +        .++|
T Consensus        75 g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~~f  141 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------VERT  141 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS----TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------CCCC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc----CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------CCCC
Confidence            468999999999999999986    7899999 111        11      68888  8888753 2        4689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|..
T Consensus       142 D~V~sd~~  149 (265)
T 2oxt_A          142 DVIMCDVG  149 (265)
T ss_dssp             SEEEECCC
T ss_pred             cEEEEeCc
Confidence            99999876

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.50  E-value=2.7e-07  Score=64.03  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||||||+|..+..+++.   +.+++++|               .++ .+++++.+|+.+. + +      .++||
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~-~-~------~~~~D   99 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNL-T-F------DRQYD   99 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGC-C-C------CCCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhC-C-C------CCCce
Confidence            4679999999999999999987   57999999               233 4699999998764 2 1      36899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       100 ~v~~~~~l  107 (199)
T 2xvm_A          100 FILSTVVL  107 (199)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchh
Confidence            99987543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.50  E-value=9.3e-08  Score=72.55  Aligned_cols=61  Identities=25%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|+.|..+++.   ..+|+++|            ..-.++++++++|+.+. + +.     ..+||.|+
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~-~-~~-----~~~fD~Iv  119 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV-D-LN-----KLDFNKVV  119 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS-C-GG-----GSCCSEEE
T ss_pred             CcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC-C-cc-----cCCccEEE
Confidence            3469999999999999999997   57999999            11126899999999875 1 21     35799999


Q ss_pred             EcC
Q 042171           72 MDA   74 (125)
Q Consensus        72 id~   74 (125)
                      .+.
T Consensus       120 ~Nl  122 (295)
T 3gru_A          120 ANL  122 (295)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            753

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.50  E-value=2e-07  Score=71.96  Aligned_cols=66  Identities=9%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..++++.| +.+++++|              .++.++|+++.+|..+.   +      ..+||+
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~------p~~~D~  271 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET---I------PDGADV  271 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC---C------CSSCSE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC---C------CCCceE
Confidence            467999999999999999999987 78999999              46678999999999732   2      237999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++......+
T Consensus       272 v~~~~vlh~~  281 (369)
T 3gwz_A          272 YLIKHVLHDW  281 (369)
T ss_dssp             EEEESCGGGS
T ss_pred             EEhhhhhccC
Confidence            9986654433

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.50  E-value=1.3e-07  Score=68.40  Aligned_cols=63  Identities=16%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++..   .+++++|               .++ .+++++.+|+.+. + +     ..++||
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD   89 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL-P-F-----PDDSFD   89 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC-C-S-----CTTCEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccC-C-C-----CCCcEE
Confidence            45799999999999999999874   5899999               233 4799999998753 3 2     247899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++.....
T Consensus        90 ~v~~~~~l~   98 (239)
T 1xxl_A           90 IITCRYAAH   98 (239)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECCchh
Confidence            999975543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.50  E-value=1.6e-07  Score=72.01  Aligned_cols=63  Identities=14%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.++...+++.+++++|               +++. +++++++|+.+..+.       ..+||
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~-------~~~~D  274 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRF-------FPEVD  274 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGT-------CCCCS
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccc-------cCCCC
Confidence            356899999999999999999873378999999               5675 899999999876322       45699


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++|.
T Consensus       275 ~Ii~np  280 (354)
T 3tma_A          275 RILANP  280 (354)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.49  E-value=1.4e-07  Score=74.89  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..|+.+++.++..++|+++|               .++ .+++++.+|+.+..+.+     ..++||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEII-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSS-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhh-----ccCCCC
Confidence            346999999999999999999987459999999               355 47999999997652222     126799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       333 ~Vl~D~P  339 (450)
T 2yxl_A          333 KVLLDAP  339 (450)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9999853

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.49  E-value=2.4e-07  Score=73.72  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C--------------CCC-CcEEEEecchHHH---HHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A--------------RVD-HKINFIESEALSV---LDQL   57 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~--------------~~~-~~i~~~~gd~~~~---l~~~   57 (125)
                      +..+|||||||+|+.++.+|+..+ ..+|+++|        +              ++. .+++++++|....   ++..
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            456999999999999999999876 57899999        2              332 6899999865421   2211


Q ss_pred             hhcCCCCCceeEEEEc
Q 042171           58 LKDSENEVNFDYAFMD   73 (125)
Q Consensus        58 ~~~~~~~~~fD~v~id   73 (125)
                            .++||+|++.
T Consensus       321 ------~~~FDvIvvn  330 (433)
T 1u2z_A          321 ------IPQCDVILVN  330 (433)
T ss_dssp             ------GGGCSEEEEC
T ss_pred             ------cCCCCEEEEe
Confidence                  3689999985

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.49  E-value=2.2e-07  Score=69.70  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..|..+++.   ..+|+++|               .+..++++++++|+.+. +        ..+||
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-~--------~~~fD   95 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-D--------LPFFD   95 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-C--------CCCCS
T ss_pred             CCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-c--------chhhc
Confidence            4568999999999999999997   46899999               22336899999999864 2        24799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|+++..
T Consensus        96 ~vv~nlp  102 (285)
T 1zq9_A           96 TCVANLP  102 (285)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9998543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.49  E-value=2.4e-07  Score=74.36  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..++.+++. + ..+|+++|              .++.++|+++.+|+.+. + +      .++||+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-~------~~~fD~  227 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-L------PEQVDI  227 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C------SSCEEE
T ss_pred             CCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-c-c------CCCeEE
Confidence            4579999999999999999884 4 57999999              46778999999999864 1 2      367999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |+++.
T Consensus       228 Ivs~~  232 (480)
T 3b3j_A          228 IISEP  232 (480)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            99854

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.48  E-value=2.7e-07  Score=70.42  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..+ +.+++++|              .++.++++++.+|..+.+|         ..||+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~D~  252 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---------RKADA  252 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---------SCEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC---------CCccE
Confidence            457999999999999999999987 68999999              3565689999999875322         34999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++....+++
T Consensus       253 v~~~~vl~~~  262 (360)
T 1tw3_A          253 IILSFVLLNW  262 (360)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEcccccCC
Confidence            9987654433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.47  E-value=1e-07  Score=69.84  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||||||+|..+..+++.++ +.+++++|         .....+++++.+|+.+. + +     ..++||+|++..
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~  156 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-P-F-----SDTSMDAIIRIY  156 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-S-B-----CTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhC-C-C-----CCCceeEEEEeC
Confidence            467999999999999999999886 68999999         11125688999998754 3 2     147899999865


Q ss_pred             CCcCCHHHHh
Q 042171           75 DKDNYCNYMR   84 (125)
Q Consensus        75 ~~~~~~~~~~   84 (125)
                      ......++.+
T Consensus       157 ~~~~l~~~~~  166 (269)
T 1p91_A          157 APCKAEELAR  166 (269)
T ss_dssp             CCCCHHHHHH
T ss_pred             ChhhHHHHHH
Confidence            5444444433

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.47  E-value=1.1e-07  Score=71.56  Aligned_cols=63  Identities=13%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|+.++.+|+.-  ..+|+++|               .++.++++++++|+.+..+        .+.||
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~~D  194 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIAD  194 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccCCC
Confidence            45789999999999999999862  46899999               6788899999999987632        57899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      .|+++-..
T Consensus       195 ~Vi~~~p~  202 (278)
T 3k6r_A          195 RILMGYVV  202 (278)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCCC
Confidence            99997544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.47  E-value=1.7e-07  Score=73.18  Aligned_cols=60  Identities=15%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+++.   +.+|+++|               .++  .++++.+|+.+..+.       .++||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~-------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTE-------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCT-------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhcccc-------CCCeE
Confidence            4569999999999999999987   57999999               223  489999999876321       37899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|+++..
T Consensus       301 ~Ii~npp  307 (381)
T 3dmg_A          301 IIVTNPP  307 (381)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999743

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.47  E-value=2.2e-07  Score=67.22  Aligned_cols=60  Identities=18%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++.+|||+|||+|..++.+++.   +.+++++|             .....+++++.+|+.+. + +      .++||+|
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD~v  109 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-A-F------KNEFDAV  109 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-C-C------CSCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc-c-c------CCCccEE
Confidence            4579999999999999999986   57999999             11223699999999864 2 1      3679999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      ++..
T Consensus       110 ~~~~  113 (252)
T 1wzn_A          110 TMFF  113 (252)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9753

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.45  E-value=3.8e-07  Score=71.88  Aligned_cols=64  Identities=17%  Similarity=0.176  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..|+.+++..+ +++|+++|               .++  +++++.+|+.+..+.+.     .++||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~-----~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCG-----EQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHT-----TCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcc-----cCCCC
Confidence            346999999999999999999987 59999999               233  47899999987644341     36899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       318 ~Vl~D~P  324 (429)
T 1sqg_A          318 RILLDAP  324 (429)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999864

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.45  E-value=1.7e-07  Score=66.50  Aligned_cols=62  Identities=19%  Similarity=0.300  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...+|||||||+|..+..+++..+   +++++|             .....+++++.+|+.+. + +     ..++||+|
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v  107 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-S-F-----EDKTFDYV  107 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-C-S-----CTTCEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-C-C-----CCCcEEEE
Confidence            357999999999999999998743   899999             11126799999998764 2 2     14689999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++...
T Consensus       108 ~~~~~  112 (227)
T 1ve3_A          108 IFIDS  112 (227)
T ss_dssp             EEESC
T ss_pred             EEcCc
Confidence            98755

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.45  E-value=3.9e-07  Score=70.70  Aligned_cols=62  Identities=11%  Similarity=-0.027  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +..+|||+|||+|..++.+++..+...+++++|     ..+..+++++++|..+..+        .++||+|+++
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~--------~~~fD~Ii~N  105 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP--------GEAFDLILGN  105 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC--------SSCEEEEEEC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc--------cCCCCEEEEC
Confidence            356999999999999999999874468999999     2333689999999986521        4689999985

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.45  E-value=3e-07  Score=67.73  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++. + ..+++++|               .++..+++++.+|+.+. + +.    ..++||
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~~fD  135 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H-MD----LGKEFD  135 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C-CC----CSSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c-cC----CCCCcC
Confidence            5679999999999999998886 3 46999999               34446899999999865 2 10    147899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++....
T Consensus       136 ~v~~~~~l  143 (298)
T 1ri5_A          136 VISSQFSF  143 (298)
T ss_dssp             EEEEESCG
T ss_pred             EEEECchh
Confidence            99987653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.45  E-value=1.3e-07  Score=66.90  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +..+|||||||+|..+..+++.   +.+++++|          .....+++++.+|+.+. + +      .++||+|++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~-~-~------~~~fD~v~~~  113 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF-E-V------PTSIDTIVST  113 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC-C-C------CSCCSEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc-C-C------CCCeEEEEEC
Confidence            4679999999999999999987   57999999          11225799999999865 2 1      3789999997


Q ss_pred             CCCcC
Q 042171           74 ADKDN   78 (125)
Q Consensus        74 ~~~~~   78 (125)
                      .....
T Consensus       114 ~~l~~  118 (220)
T 3hnr_A          114 YAFHH  118 (220)
T ss_dssp             SCGGG
T ss_pred             cchhc
Confidence            65443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.44  E-value=1.3e-07  Score=70.44  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCC----CcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVD----HKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~----~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      ++.+|||||||+|..+..+++.   +.+|+++|             ....    .+++++.+|+.+. + +      .++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-L------DKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-C------SCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-c------CCC
Confidence            4569999999999999999987   57899999             1111    6799999999874 2 1      478


Q ss_pred             eeEEEEc
Q 042171           67 FDYAFMD   73 (125)
Q Consensus        67 fD~v~id   73 (125)
                      ||+|++.
T Consensus       151 fD~v~~~  157 (299)
T 3g2m_A          151 FGTVVIS  157 (299)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEC
Confidence            9999964

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.44  E-value=1.6e-07  Score=72.74  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|||+| |+|..++.+++..+ .++|+++|               .++. +++++.+|+.+.+|..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            467999999 99999999998754 58999999               3564 8999999998744421     035899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++|.
T Consensus       244 ~Vi~~~  249 (373)
T 2qm3_A          244 TFITDP  249 (373)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999985

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.44  E-value=4.7e-07  Score=64.78  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CC-CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------AR-VDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|..+..+++. + ..+++++|          .. ...+++++.+|+.+. + +     ..++||+|++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~  113 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-H-L-----PQDSFDLAYS  113 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-C-C-----CTTCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-c-C-----CCCCceEEEE
Confidence            4679999999999999999987 2 24999999          11 124799999999764 2 2     1478999998


Q ss_pred             cCCC
Q 042171           73 DADK   76 (125)
Q Consensus        73 d~~~   76 (125)
                      ....
T Consensus       114 ~~~l  117 (243)
T 3bkw_A          114 SLAL  117 (243)
T ss_dssp             ESCG
T ss_pred             eccc
Confidence            7553

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.44  E-value=3e-07  Score=66.32  Aligned_cols=67  Identities=9%  Similarity=-0.000  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++..  ..+++++|            ..-..+++++.+|+.+. + +     ..++||+|+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~  163 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-T-L-----PPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-C-C-----CSSCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-C-C-----CCCCeEEEE
Confidence            46799999999999999999875  46899999            11116899999999764 3 2     247899999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +.......
T Consensus       164 ~~~~l~~~  171 (254)
T 1xtp_A          164 IQWTAIYL  171 (254)
T ss_dssp             EESCGGGS
T ss_pred             EcchhhhC
Confidence            87654433

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.44  E-value=2.4e-07  Score=68.29  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +..+|||||||+|..+..+++  + +++|+++|          ... .+++++.+|+.+. + +      .++||+|++.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~d~~~~-~-~------~~~fD~v~~~  124 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY-PHLHFDVADARNF-R-V------DKPLDAVFSN  124 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC-TTSCEEECCTTTC-C-C------SSCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC-CCCEEEECChhhC-C-c------CCCcCEEEEc
Confidence            457999999999999999998  3 78999999          112 5789999999764 3 2      4789999987


Q ss_pred             CCC
Q 042171           74 ADK   76 (125)
Q Consensus        74 ~~~   76 (125)
                      ...
T Consensus       125 ~~l  127 (279)
T 3ccf_A          125 AML  127 (279)
T ss_dssp             SCG
T ss_pred             chh
Confidence            654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.42  E-value=3e-07  Score=64.87  Aligned_cols=75  Identities=11%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ++.+|||||||+|..+..+++.   +.+++++|        +.-..+++++.++..+......   ....+||+|++...
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~v~~~~~  125 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKV---PVGKDYDLICANFA  125 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCS---CCCCCEEEEEEESC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhccccc---ccCCCccEEEECch
Confidence            5689999999999999999987   57999999        1111567889999877621110   12456999999755


Q ss_pred             C--cCCHHHHh
Q 042171           76 K--DNYCNYMR   84 (125)
Q Consensus        76 ~--~~~~~~~~   84 (125)
                      .  .....+++
T Consensus       126 l~~~~~~~~l~  136 (227)
T 3e8s_A          126 LLHQDIIELLS  136 (227)
T ss_dssp             CCSSCCHHHHH
T ss_pred             hhhhhHHHHHH
Confidence            3  23344544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.42  E-value=4.4e-07  Score=68.36  Aligned_cols=67  Identities=19%  Similarity=0.283  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      .+..+|||||||+|..+..+++..| +.+++++|              .++.++++++.+|..+. + +      ...||
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~~D  234 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV-D-Y------GNDYD  234 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-C------CSCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCc
Confidence            3567999999999999999999987 68999999              34566899999998764 2 2      23499


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      +|++......
T Consensus       235 ~v~~~~~l~~  244 (335)
T 2r3s_A          235 LVLLPNFLHH  244 (335)
T ss_dssp             EEEEESCGGG
T ss_pred             EEEEcchhcc
Confidence            9998554433

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.40  E-value=2e-07  Score=70.50  Aligned_cols=64  Identities=11%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      .+|||||||+|..+..+++..| +.+++++|              .++.++++++.+|..+.   +      ..+||+|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v~  238 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIYL  238 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEEE
Confidence            7999999999999999999987 68999999              12346899999998762   2      25699999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +....+++
T Consensus       239 ~~~vl~~~  246 (334)
T 2ip2_A          239 LSRIIGDL  246 (334)
T ss_dssp             EESCGGGC
T ss_pred             EchhccCC
Confidence            87665443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.39  E-value=5.1e-07  Score=65.41  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C------------------CCCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A------------------RVDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~------------------~~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +..+|||||||+|..++.+++..+ +.+|+++| +                  ++ .+++++.+|+.+. |..     ..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l-~~~-----~~   95 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESL-PFE-----LK   95 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBC-CGG-----GT
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHh-hhh-----cc
Confidence            456899999999999999998765 78999999 2                  12 4799999999876 321     02


Q ss_pred             CceeEEEEc
Q 042171           65 VNFDYAFMD   73 (125)
Q Consensus        65 ~~fD~v~id   73 (125)
                      ..+|.|++.
T Consensus        96 d~v~~i~~~  104 (225)
T 3p2e_A           96 NIADSISIL  104 (225)
T ss_dssp             TCEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            568888774

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.39  E-value=3.5e-07  Score=64.10  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++..+  .+++++|            ..-..+++++.+|+.+. + +     ..++||+|+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~fD~v~  112 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-D-F-----PSASFDVVL  112 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-C-S-----CSSCEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-C-C-----CCCcccEEE
Confidence            456999999999999999998743  3899999            11125799999998764 2 2     247899999


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      +.
T Consensus       113 ~~  114 (215)
T 2pxx_A          113 EK  114 (215)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.39  E-value=6.2e-07  Score=68.64  Aligned_cols=57  Identities=23%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++. |+  + ..+|+++|               .++.++++++.+|+.+.+          .+||
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD  260 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKGN  260 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEE
T ss_pred             CCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCCc
Confidence            457999999999999999 77  3 68999999               456678999999998652          5699


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +|++|.
T Consensus       261 ~Vi~dp  266 (336)
T 2yx1_A          261 RVIMNL  266 (336)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999974

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.39  E-value=2.9e-07  Score=68.33  Aligned_cols=61  Identities=13%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..|..+++.   .++|+++|            ..-.++++++++|+.+. ++.+.    ...+|| |
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~----~~~~~~-v  100 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVK----TDKPLR-V  100 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSC----CSSCEE-E
T ss_pred             CcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhc----cCCCeE-E
Confidence            3568999999999999999986   47999999            11136899999999876 22221    135788 4


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      +.
T Consensus       101 v~  102 (255)
T 3tqs_A          101 VG  102 (255)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.38  E-value=5.1e-08  Score=71.08  Aligned_cols=32  Identities=22%  Similarity=0.081  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhh--CCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALT--IPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~--~~~~~~v~~iD   36 (125)
                      ++.+|||+|||+|..++.+++.  .+ ..+|+++|
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvD   84 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASD   84 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEE
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEE
Confidence            4569999999999999999998  44 57999999

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.37  E-value=2e-07  Score=68.04  Aligned_cols=59  Identities=14%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|..+..+++.   ..+|+++|          ... .+++++.+|+.+. +.       .++||+|++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~d~~~~-~~-------~~~fD~v~~~  117 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRN-PDAVLHHGDMRDF-SL-------GRRFSAVTCM  117 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHC-TTSEEEECCTTTC-CC-------SCCEEEEEEC
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC-CCCEEEECChHHC-Cc-------cCCcCEEEEc
Confidence            4579999999999999999886   46899999          112 3799999999864 21       4789999986


Q ss_pred             C
Q 042171           74 A   74 (125)
Q Consensus        74 ~   74 (125)
                      .
T Consensus       118 ~  118 (263)
T 3pfg_A          118 F  118 (263)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.37  E-value=2.5e-07  Score=69.86  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..|..+++.   .++|+++|               .++ ++++++.+|+.+. +        ..+||
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~-~--------~~~~D  108 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT-V--------FPKFD  108 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS-C--------CCCCS
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC-C--------cccCC
Confidence            4569999999999999999986   57999999               234 6899999998754 2        25799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|+++..
T Consensus       109 ~Vv~n~p  115 (299)
T 2h1r_A          109 VCTANIP  115 (299)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9998654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.36  E-value=6.3e-07  Score=68.47  Aligned_cols=65  Identities=17%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..++++.| +.+++++|            .++.++|+++.+|..+.   +      . +||+|+
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~------p-~~D~v~  252 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLRE---V------P-HADVHV  252 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTC---C------C-CCSEEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCC-CCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCC---C------C-CCcEEE
Confidence            456999999999999999999998 78999999            23456899999999622   2      3 799999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +....+.+
T Consensus       253 ~~~vlh~~  260 (348)
T 3lst_A          253 LKRILHNW  260 (348)
T ss_dssp             EESCGGGS
T ss_pred             EehhccCC
Confidence            86654433

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.36  E-value=6.1e-07  Score=68.12  Aligned_cols=59  Identities=8%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC-----C--C-----C----CcEEEEec-chHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA-----R--V-----D----HKINFIES-EALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~-----~--~-----~----~~i~~~~g-d~~~~l~~~~~~~~~~~~f   67 (125)
                      ..+|||+|||+|.++..+++.    ++|+++|.     .  +     .    ++++++++ |+.+. +        ..+|
T Consensus        83 g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l-~--------~~~f  149 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI-P--------PERC  149 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS-C--------CCCC
T ss_pred             CCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC-C--------cCCC
Confidence            469999999999999999987    57999982     1  1     1    46899998 77643 2        3689


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|++|...
T Consensus       150 D~V~sd~~~  158 (305)
T 2p41_A          150 DTLLCDIGE  158 (305)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999775

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.35  E-value=9.9e-07  Score=67.49  Aligned_cols=66  Identities=15%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..| +.+++++|              .++.++++++.+|..+. + +       ..+|+
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-------~~~D~  259 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-Y-------PEADA  259 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C-C-------CCCSE
T ss_pred             CCCEEEEECCcccHHHHHHHHHCC-CCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC-C-C-------CCCCE
Confidence            457999999999999999999987 78999999              35667899999999765 2 2       23499


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++......+
T Consensus       260 v~~~~vlh~~  269 (359)
T 1x19_A          260 VLFCRILYSA  269 (359)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEechhccC
Confidence            9986654443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.35  E-value=1e-06  Score=65.66  Aligned_cols=30  Identities=17%  Similarity=0.117  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..++.+++.   +.+|+++|
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD   74 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER---GASVTVFD   74 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT---TCEEEEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhc---CCEEEEEE
Confidence            3569999999999999999986   57999999

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.34  E-value=3.2e-07  Score=67.81  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C-------CC---CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A-------RV---DHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~-------~~---~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ++.+|||||||+|..+..+++.   +.+|+++|        +       +.   ..++.+..+|+.+....+.    ..+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~  129 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP----AGD  129 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC----CTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc----cCC
Confidence            4579999999999999999987   46999999        1       11   1468899999987632210    157


Q ss_pred             ceeEEEEc
Q 042171           66 NFDYAFMD   73 (125)
Q Consensus        66 ~fD~v~id   73 (125)
                      +||+|++.
T Consensus       130 ~fD~V~~~  137 (293)
T 3thr_A          130 GFDAVICL  137 (293)
T ss_dssp             CEEEEEEC
T ss_pred             CeEEEEEc
Confidence            89999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.34  E-value=3.4e-07  Score=63.02  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||||||+|..+..+++.   +.+++++|         .....+++++.+|+.+. + +     +.++||+|++..
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVD-Q-I-----SETDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTS-C-C-----CCCCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccC-C-C-----CCCceeEEEECC
Confidence            5679999999999999999987   57999999         11124689999998764 2 2     147899999963

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.32  E-value=4.6e-07  Score=63.42  Aligned_cols=60  Identities=17%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +.+|||||||+|..+..+++.   +.+++++|             .....+++++.+|+.+. + +     +.++||+|+
T Consensus        30 ~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~   99 (202)
T 2kw5_A           30 QGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF-D-I-----VADAWEGIV   99 (202)
T ss_dssp             SSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB-S-C-----CTTTCSEEE
T ss_pred             CCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc-C-C-----CcCCccEEE
Confidence            349999999999999999986   57999999             00112799999998765 2 2     147899999


Q ss_pred             EcC
Q 042171           72 MDA   74 (125)
Q Consensus        72 id~   74 (125)
                      +..
T Consensus       100 ~~~  102 (202)
T 2kw5_A          100 SIF  102 (202)
T ss_dssp             EEC
T ss_pred             EEh
Confidence            853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.32  E-value=8.3e-07  Score=63.93  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHH--HhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQ--LLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~--~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..+   +|+++|            .. ..+++++++|+.+....  +..    ..+||+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~~~----~~~~d~  127 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIHS----EIGDAN  127 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHHHH----HHCSCE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc-ccCceEEECccccccccccccc----ccCccE
Confidence            346899999999999999999854   799999            22 24899999999875221  110    235999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++.......
T Consensus       128 v~~~~~~~~~  137 (245)
T 3ggd_A          128 IYMRTGFHHI  137 (245)
T ss_dssp             EEEESSSTTS
T ss_pred             EEEcchhhcC
Confidence            9997665433

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.30  E-value=1.2e-06  Score=69.62  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C--------------CC-CCcEEEEecchHHHHHHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A--------------RV-DHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~--------------~~-~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      +..+|||||||+|..++.+|+..+ ..++++||        +              ++ ..+|++++||+.+. +.. ..
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l-p~~-d~  249 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-EWR-ER  249 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH-HHH-HH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC-ccc-cc
Confidence            456899999999999999998876 45799999        0              23 26899999999875 321 00


Q ss_pred             CCCCCceeEEEEcC
Q 042171           61 SENEVNFDYAFMDA   74 (125)
Q Consensus        61 ~~~~~~fD~v~id~   74 (125)
                         -..||+||+..
T Consensus       250 ---~~~aDVVf~Nn  260 (438)
T 3uwp_A          250 ---IANTSVIFVNN  260 (438)
T ss_dssp             ---HHTCSEEEECC
T ss_pred             ---cCCccEEEEcc
Confidence               14699999853

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.30  E-value=7e-07  Score=63.78  Aligned_cols=60  Identities=12%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++.+|||||||+|..+..+++.   +.+++++|             .....+++++.+|+.+. + +      .++||+|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~------~~~fD~v  105 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-N-I------NRKFDLI  105 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-C-C------SCCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC-C-c------cCCceEE
Confidence            5679999999999999999987   46899999             11112799999999764 2 1      3689999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      ++..
T Consensus       106 ~~~~  109 (246)
T 1y8c_A          106 TCCL  109 (246)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            9865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.29  E-value=7.4e-07  Score=63.74  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++.    .+++++|             .....+++++.+|+.+. + +      .++||+|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~------~~~fD~v  100 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL-E-L------PEPVDAI  100 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC-C-C------SSCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc-C-C------CCCcCEE
Confidence            3479999999999999998876    6899999             11225799999998764 2 1      3689999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      ++..
T Consensus       101 ~~~~  104 (243)
T 3d2l_A          101 TILC  104 (243)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            9864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.29  E-value=5.2e-07  Score=63.63  Aligned_cols=63  Identities=16%  Similarity=0.026  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC--------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA--------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~--------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      +..+|||||||+|..+..+++.   +.+++++|.        .-..+++++.+|..+. + .      .++||+|++...
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~-~-~------~~~fD~v~~~~~  111 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRLGRPVRTMLFHQL-D-A------IDAYDAVWAHAC  111 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGC-C-C------CSCEEEEEECSC
T ss_pred             CCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhcCCceEEeeeccC-C-C------CCcEEEEEecCc
Confidence            4569999999999999999987   579999991        0001567888888765 2 1      588999998765


Q ss_pred             Cc
Q 042171           76 KD   77 (125)
Q Consensus        76 ~~   77 (125)
                      ..
T Consensus       112 l~  113 (211)
T 3e23_A          112 LL  113 (211)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.28  E-value=1.5e-06  Score=65.15  Aligned_cols=58  Identities=14%  Similarity=0.047  Sum_probs=45.0

Q ss_pred             EEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            7 KTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +|||||||+|..|..+++.   .++|+++|            .. ..+++++++|+.+.-  +.    +...+|.|+.+-
T Consensus        49 ~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~-~~~v~vi~~D~l~~~--~~----~~~~~~~iv~Nl  118 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS-GLPVRLVFQDALLYP--WE----EVPQGSLLVANL  118 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT-TSSEEEEESCGGGSC--GG----GSCTTEEEEEEE
T ss_pred             eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC-CCCEEEEECChhhCC--hh----hccCccEEEecC
Confidence            8999999999999999997   47899999            22 258999999998751  21    013688888643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.28  E-value=3.9e-07  Score=62.15  Aligned_cols=63  Identities=10%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||+|||+|..+.++++..   .+++++|         ....++++++.+|    ++ +     ..++||+|++..
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~-~-----~~~~~D~v~~~~   83 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP----KE-I-----PDNSVDFILFAN   83 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG----GG-S-----CTTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC----CC-C-----CCCceEEEEEcc
Confidence            44599999999999999999875   4999999         1113689999998    23 2     257899999876


Q ss_pred             CCcCC
Q 042171           75 DKDNY   79 (125)
Q Consensus        75 ~~~~~   79 (125)
                      .....
T Consensus        84 ~l~~~   88 (170)
T 3i9f_A           84 SFHDM   88 (170)
T ss_dssp             CSTTC
T ss_pred             chhcc
Confidence            65433

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.26  E-value=1.1e-06  Score=69.58  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.+|+.   ..+|+++|               .++.  ++++.+|+.+.++         .+||
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~---------~~fD  355 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV---------KGFD  355 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC---------TTCS
T ss_pred             CCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc---------cCCC
Confidence            4579999999999999999986   46899999               2453  9999999987632         3799


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++|...
T Consensus       356 ~Vv~dPPr  363 (425)
T 2jjq_A          356 TVIVDPPR  363 (425)
T ss_dssp             EEEECCCT
T ss_pred             EEEEcCCc
Confidence            99998664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.24  E-value=6.8e-07  Score=63.77  Aligned_cols=59  Identities=12%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|..+..+++..   .+++++|          ..+ .+++++.+|+.+. + +      .++||+|++.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-~~~~~~~~d~~~~-~-~------~~~~D~v~~~  107 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-PDATLHQGDMRDF-R-L------GRKFSAVVSM  107 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-TTCEEEECCTTTC-C-C------SSCEEEEEEC
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-CCCEEEECCHHHc-c-c------CCCCcEEEEc
Confidence            46799999999999999999874   3899999          112 4689999998764 2 1      3689999963


Q ss_pred             C
Q 042171           74 A   74 (125)
Q Consensus        74 ~   74 (125)
                      .
T Consensus       108 ~  108 (239)
T 3bxo_A          108 F  108 (239)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.23  E-value=1.9e-06  Score=65.77  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..+++..| +.+++++|       +.-..+++++.+|..+.   +       ..||+|++....
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~-------p~~D~v~~~~~l  256 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS---I-------PNADAVLLKYIL  256 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCBTTEEEEECCTTTC---C-------CCCSEEEEESCG
T ss_pred             cCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeCHHHHhhcccCCCcEEEeccccCC---C-------CCccEEEeehhh
Confidence            457999999999999999999987 68999999       21124699999998652   2       239999986544


Q ss_pred             c
Q 042171           77 D   77 (125)
Q Consensus        77 ~   77 (125)
                      +
T Consensus       257 h  257 (352)
T 1fp2_A          257 H  257 (352)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.22  E-value=2.1e-06  Score=66.21  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..++++.| +.+++++|       +.-.++|+++.+|..+.+|        ..  |+|++....
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p--------~~--D~v~~~~vl  271 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP--------KG--DAIFIKWIC  271 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCC--------CC--SEEEEESCG
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCC--------CC--CEEEEechh
Confidence            357999999999999999999998 78999999       3333689999999875322        22  999986654


Q ss_pred             c
Q 042171           77 D   77 (125)
Q Consensus        77 ~   77 (125)
                      +
T Consensus       272 h  272 (368)
T 3reo_A          272 H  272 (368)
T ss_dssp             G
T ss_pred             h
Confidence            4

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.22  E-value=1.1e-06  Score=68.70  Aligned_cols=63  Identities=8%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCC------CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARV------DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      ...++||+||++|.||..+++.   +++|++|| ..+      ..+|+++++|+....|.       ..+||.|++|...
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~-------~~~~D~vvsDm~~  280 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPT-------RSNISWMVCDMVE  280 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCC-------SSCEEEEEECCSS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcChhhccCCCeEEEeCccccccCC-------CCCcCEEEEcCCC
Confidence            3568999999999999999886   68999999 333      35899999999876432       4689999999876

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.22  E-value=2.2e-06  Score=64.88  Aligned_cols=61  Identities=13%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             CCEEEEEcC------cccHHHHHHHhhCCCCCEEEEEe-CCCCCcEEE-EecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            5 LKKTIEIGV------FTGYSLFLTALTIPEDGQITAID-ARVDHKINF-IESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         5 ~~~vLeiG~------g~G~~t~~la~~~~~~~~v~~iD-~~~~~~i~~-~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ..+|||+||      |+|.  ..+++.++++++|+++| ...-+++++ +++|+.+. + +      .++||+|++|..
T Consensus        64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~-~-~------~~~fD~Vvsn~~  132 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATV-H-T------ANKWDLIISDMY  132 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGC-C-C------SSCEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccC-C-c------cCcccEEEEcCC
Confidence            459999999      4466  55677787679999999 222357889 99999764 2 1      367999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.21  E-value=2.1e-06  Score=64.99  Aligned_cols=74  Identities=18%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--CC-C------CCcEEEEe-cchHHHHH-HHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--AR-V------DHKINFIE-SEALSVLD-QLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--~~-~------~~~i~~~~-gd~~~~l~-~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||||..|.++++. + .++|+++|  .+ +      ..++.... .++....+ .+     +..+||+|++
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l-----~~~~fD~v~~  157 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDF-----TEGLPSFASI  157 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGC-----TTCCCSEEEE
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhC-----CCCCCCEEEE
Confidence            3469999999999999999886 3 57999999  11 1      13554443 34433211 11     1245999999


Q ss_pred             cCCCcCCHHHHh
Q 042171           73 DADKDNYCNYMR   84 (125)
Q Consensus        73 d~~~~~~~~~~~   84 (125)
                      |....+....++
T Consensus       158 d~sf~sl~~vL~  169 (291)
T 3hp7_A          158 DVSFISLNLILP  169 (291)
T ss_dssp             CCSSSCGGGTHH
T ss_pred             EeeHhhHHHHHH
Confidence            987655444444

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.19  E-value=4.7e-07  Score=69.25  Aligned_cols=61  Identities=20%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|..++.+++..+ ..+|+++|               .++  .++++.+|..+..         .++||
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD  263 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV---------KGRFD  263 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC---------CSCEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc---------cCCee
Confidence            356899999999999999999876 67999999               233  3677888886531         46899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|+++...
T Consensus       264 ~Iv~~~~~  271 (343)
T 2pjd_A          264 MIISNPPF  271 (343)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99997653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.18  E-value=3.3e-06  Score=65.15  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..++++.| +.+++.+|       +.-.++|+++.+|..+.+|        ..  |+|++....
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p--------~~--D~v~~~~vl  269 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVP--------SG--DTILMKWIL  269 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCC--------CC--SEEEEESCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCC--------CC--CEEEehHHh
Confidence            357999999999999999999998 78999999       3333689999999876221        23  999986655


Q ss_pred             cCC
Q 042171           77 DNY   79 (125)
Q Consensus        77 ~~~   79 (125)
                      +.+
T Consensus       270 h~~  272 (364)
T 3p9c_A          270 HDW  272 (364)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.18  E-value=2.2e-06  Score=60.41  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC-C------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA-R------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~-~------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      ++.+|||||||+|..+..+++. +  .+++++|. .      -....+++.+|+.+....+     ..++||+|++....
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~fD~v~~~~~l  103 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPY-----EEEQFDCVIFGDVL  103 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCS-----CTTCEEEEEEESCG
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCC-----CCCccCEEEECChh
Confidence            5679999999999999999987 3  89999991 0      0112378888887531112     24789999987553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.18  E-value=3.6e-06  Score=64.80  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..+++..| +.+++++|       +.-..+++++.+|..+  + +      .. ||+|++....
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~--~-~------~~-~D~v~~~~~l  277 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFA--S-V------PQ-GDAMILKAVC  277 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTT--C-C------CC-EEEEEEESSG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeChHHHHHhhhhcCCCEEEeCCccc--C-C------CC-CCEEEEeccc
Confidence            457999999999999999999997 68999999       2212579999999875  2 2      23 9999987654


Q ss_pred             cCC
Q 042171           77 DNY   79 (125)
Q Consensus        77 ~~~   79 (125)
                      +++
T Consensus       278 h~~  280 (372)
T 1fp1_D          278 HNW  280 (372)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.16  E-value=6.2e-07  Score=62.85  Aligned_cols=63  Identities=8%  Similarity=0.118  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||+|||+|..++.++...  +.+++++|             .....+++++.+|+.+. + +     +.++||+|
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v   93 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-P-F-----KDESMSFV   93 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-C-S-----CTTCEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-C-C-----CCCceeEE
Confidence            45799999999999865554442  57999999             01124688999999764 2 2     24789999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++...
T Consensus        94 ~~~~~   98 (209)
T 2p8j_A           94 YSYGT   98 (209)
T ss_dssp             EECSC
T ss_pred             EEcCh
Confidence            98543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.15  E-value=1.8e-06  Score=60.74  Aligned_cols=62  Identities=18%  Similarity=0.234  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +..+|||||||+|..+..+    + ..+++++|          ... .+++++.+|+.+. + +     +.++||+|++.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~  102 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA-PEATWVRAWGEAL-P-F-----PGESFDVVLLF  102 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC-TTSEEECCCTTSC-C-S-----CSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC-CCcEEEEcccccC-C-C-----CCCcEEEEEEc
Confidence            4679999999999998877    2 23899999          112 5789999998764 3 2     25789999987


Q ss_pred             CCCcC
Q 042171           74 ADKDN   78 (125)
Q Consensus        74 ~~~~~   78 (125)
                      .....
T Consensus       103 ~~l~~  107 (211)
T 2gs9_A          103 TTLEF  107 (211)
T ss_dssp             SCTTT
T ss_pred             Chhhh
Confidence            65443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.15  E-value=1.4e-06  Score=65.53  Aligned_cols=50  Identities=16%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe----------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID----------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD----------~~~~~~i~~~~gd~~~~   53 (125)
                      ...+|||||||+|..|..|++..+. +++|+++|          .....+++++++|+.+.
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTF  102 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence            3568999999999999999998653 46799999          11136899999999875

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.15  E-value=4.3e-06  Score=61.17  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..+++.   .++|+++|            ....++++++++|+.+.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~   88 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF   88 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred             CCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC
Confidence            3568999999999999999997   37899999            11125899999999865

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.15  E-value=1.6e-05  Score=59.18  Aligned_cols=71  Identities=8%  Similarity=0.017  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCcc---cHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHH-----hhcCCC
Q 042171            4 KLKKTIEIGVFT---GYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQL-----LKDSEN   63 (125)
Q Consensus         4 ~~~~vLeiG~g~---G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~-----~~~~~~   63 (125)
                      ...+|||||||+   |..+..+++..| +++|+++|            ..-..+++++.+|..+.-..+     .... +
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~-d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI-D  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC-C
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC-C
Confidence            347999999999   988877777666 79999999            122368999999997531100     0000 1


Q ss_pred             CCceeEEEEcCCC
Q 042171           64 EVNFDYAFMDADK   76 (125)
Q Consensus        64 ~~~fD~v~id~~~   76 (125)
                      ..+||+|++....
T Consensus       155 ~~~~d~v~~~~vl  167 (274)
T 2qe6_A          155 FSRPAAIMLVGML  167 (274)
T ss_dssp             TTSCCEEEETTTG
T ss_pred             CCCCEEEEEechh
Confidence            2579999986543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.14  E-value=4.8e-06  Score=63.70  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..+++..| +.+++++|       +.-..+++++.+|..+  + +       .+||+|++....
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~--~-~-------~~~D~v~~~~vl  261 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQPQVVGNLTGNENLNFVGGDMFK--S-I-------PSADAVLLKWVL  261 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECHHHHSSCCCCSSEEEEECCTTT--C-C-------CCCSEEEEESCG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCC-CCeEEEeccHHHHhhcccCCCcEEEeCccCC--C-C-------CCceEEEEcccc
Confidence            457999999999999999999997 68999999       2212469999999875  2 2       249999986554


Q ss_pred             cC
Q 042171           77 DN   78 (125)
Q Consensus        77 ~~   78 (125)
                      +.
T Consensus       262 h~  263 (358)
T 1zg3_A          262 HD  263 (358)
T ss_dssp             GG
T ss_pred             cC
Confidence            33

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.14  E-value=1.9e-06  Score=62.88  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|..+..+++.   +.+++++|          .....  .++.+|+.+. + +     ..++||+|++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~--~~~~~d~~~~-~-~-----~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDL-P-F-----PSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSC-C-S-----CTTCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcCC--CEEECcHHHC-C-C-----CCCCEEEEEEc
Confidence            4679999999999999999986   57999999          11112  2788888754 3 2     25789999985


Q ss_pred             C
Q 042171           74 A   74 (125)
Q Consensus        74 ~   74 (125)
                      .
T Consensus       122 ~  122 (260)
T 2avn_A          122 G  122 (260)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.12  E-value=2.9e-06  Score=63.59  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CC--------CCCcEEEEecchHHHH--HHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------AR--------VDHKINFIESEALSVL--DQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~--------~~~~i~~~~gd~~~~l--~~~~~~   60 (125)
                      ++.+|||||||+|..+..+++. + ..+++++|             ..        ...+++++.+|+.+..  ..+.. 
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-  110 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD-  110 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS-
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc-
Confidence            5679999999999999999874 3 67999999             00        2247999999998652  01210 


Q ss_pred             CCCCCceeEEEEcCCC
Q 042171           61 SENEVNFDYAFMDADK   76 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~   76 (125)
                        ..++||+|++....
T Consensus       111 --~~~~fD~V~~~~~l  124 (313)
T 3bgv_A          111 --PQMCFDICSCQFVC  124 (313)
T ss_dssp             --TTCCEEEEEEETCG
T ss_pred             --CCCCEEEEEEecch
Confidence              13589999986654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.07  E-value=3e-06  Score=65.92  Aligned_cols=67  Identities=12%  Similarity=0.080  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +..+|||||||+|..+..+++.   +.+++++|           .++.....+...+..+.++..      .++||+|++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~------~~~fD~I~~  177 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRT------EGPANVIYA  177 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHH------HCCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccC------CCCEEEEEE
Confidence            3569999999999999999985   56999999           223222222222333333422      478999999


Q ss_pred             cCCCcCC
Q 042171           73 DADKDNY   79 (125)
Q Consensus        73 d~~~~~~   79 (125)
                      .....+.
T Consensus       178 ~~vl~h~  184 (416)
T 4e2x_A          178 ANTLCHI  184 (416)
T ss_dssp             ESCGGGC
T ss_pred             CChHHhc
Confidence            7664443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.06  E-value=1e-05  Score=62.14  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..++.++++.| +.+++..|             ....+||+++.+|..+. |        ...+|++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~-~--------~~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYP-GCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD-P--------LPEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS-C--------CCCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC-C--------CCCceEE
Confidence            356899999999999999999998 78999888             23458999999998643 1        2458999


Q ss_pred             EEcCCCcCC
Q 042171           71 FMDADKDNY   79 (125)
Q Consensus        71 ~id~~~~~~   79 (125)
                      ++-.-.+.+
T Consensus       249 ~~~~vlh~~  257 (353)
T 4a6d_A          249 ILARVLHDW  257 (353)
T ss_dssp             EEESSGGGS
T ss_pred             EeeeecccC
Confidence            986554444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.06  E-value=1.7e-05  Score=61.98  Aligned_cols=96  Identities=19%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCC-------------------------------------CCCEEEEEe-----------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIP-------------------------------------EDGQITAID-----------   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~-------------------------------------~~~~v~~iD-----------   36 (125)
                      ..+|||.+||+|..++.+|....                                     ...+|+++|           
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            46899999999999999887532                                     126799999           


Q ss_pred             ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCe
Q 042171           37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCV  112 (125)
Q Consensus        37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (125)
                          +++.++|+++++|+.+..+        ..+||+|++      +|+|.+...   ........++++.+.++.-+++
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~------NPPyg~rl~---~~~~l~~ly~~lg~~lk~~~g~  338 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIIT------NPPYGERLE---DKDSVKQLYKELGYAFRKLKNW  338 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEE------CCCCCCSHH---HHHHHHHHHHHHHHHHHTSBSC
T ss_pred             HHHHcCCCCceEEEECChhhcCc--------CCCCcEEEE------CCCCcCccC---CHHHHHHHHHHHHHHHhhCCCC
Confidence                5676789999999987522        358999997      344432100   0001344566677777766666


Q ss_pred             EEEEe
Q 042171          113 QLSHV  117 (125)
Q Consensus       113 ~~~~l  117 (125)
                      ...++
T Consensus       339 ~~~ii  343 (385)
T 3ldu_A          339 SYYLI  343 (385)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.06  E-value=1.3e-05  Score=59.42  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhh----CCCCCEE--EEEe-------------C---CCCCcE--EEEecchHHHHHHHhhc
Q 042171            5 LKKTIEIGVFTGYSLFLTALT----IPEDGQI--TAID-------------A---RVDHKI--NFIESEALSVLDQLLKD   60 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~----~~~~~~v--~~iD-------------~---~~~~~i--~~~~gd~~~~l~~~~~~   60 (125)
                      +.+|||||||+|..+..+++.    .+ +.+|  +++|             .   ++ .++  .+..+++.+..+.....
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhccc
Confidence            458999999999887655433    33 5655  9999             1   22 344  45677776543211000


Q ss_pred             CCCCCceeEEEEcCCCcCC
Q 042171           61 SENEVNFDYAFMDADKDNY   79 (125)
Q Consensus        61 ~~~~~~fD~v~id~~~~~~   79 (125)
                       -..++||+|++....++.
T Consensus       131 -~~~~~fD~V~~~~~l~~~  148 (292)
T 2aot_A          131 -KELQKWDFIHMIQMLYYV  148 (292)
T ss_dssp             -TCCCCEEEEEEESCGGGC
T ss_pred             -cCCCceeEEEEeeeeeec
Confidence             014789999987654433

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.06  E-value=5.9e-07  Score=65.04  Aligned_cols=31  Identities=26%  Similarity=0.133  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..++.+++...  .+|+++|
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD   86 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSD   86 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEec
Confidence            456899999999999999887532  4899999

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.06  E-value=2.6e-05  Score=61.09  Aligned_cols=96  Identities=13%  Similarity=0.012  Sum_probs=64.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-------------------------------------CCEEEEEe-----------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-------------------------------------DGQITAID-----------   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-------------------------------------~~~v~~iD-----------   36 (125)
                      ...|||.+||+|..++.+|.....                                     ..+|+++|           
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            458999999999999887764321                                     25799999           


Q ss_pred             ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCe
Q 042171           37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCV  112 (125)
Q Consensus        37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (125)
                          +++.++|+++++|+.+..+        ..+||+|++|      |+|-+...   ........++++.+.++.-+++
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~N------PPYg~rl~---~~~~l~~ly~~lg~~lk~~~g~  344 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVAN------PPYGERLE---DEEAVRQLYREMGIVYKRMPTW  344 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEEC------CCCCCSHH---HHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHcCCCCceEEEECChHhCCC--------CCCCCEEEEC------CCCccccC---CchhHHHHHHHHHHHHhcCCCC
Confidence                6787789999999987521        3589999973      33322000   0001333456666777766677


Q ss_pred             EEEEe
Q 042171          113 QLSHV  117 (125)
Q Consensus       113 ~~~~l  117 (125)
                      ...++
T Consensus       345 ~~~ii  349 (393)
T 3k0b_A          345 SVYVL  349 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76665

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.04  E-value=7.6e-06  Score=60.87  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..++.+++. + ..+|+++|
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D  109 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLA-G-ADQVVATD  109 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEE
T ss_pred             CCCeEEEecccccHHHHHHHHc-C-CCEEEEEe
Confidence            4579999999999999999885 3 35999999

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.04  E-value=5e-06  Score=61.30  Aligned_cols=48  Identities=19%  Similarity=0.217  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..+++. + ..+|+++|          ..-..+++++++|+.+.
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSIGDERLEVINEDASKF   88 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred             CcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhC
Confidence            3569999999999999999986 3 58999999          11235799999999875

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.02  E-value=1.1e-05  Score=63.12  Aligned_cols=96  Identities=6%  Similarity=-0.070  Sum_probs=66.1

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-------------------------------------CCEEEEEe-----------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-------------------------------------DGQITAID-----------   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-------------------------------------~~~v~~iD-----------   36 (125)
                      ...+||.+||+|..++..|.....                                     ..+|+++|           
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            458999999999999987764321                                     25799999           


Q ss_pred             ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCe
Q 042171           37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCV  112 (125)
Q Consensus        37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (125)
                          +++.++++++++|+.+..+        ..+||+|++      +|+|-+. +.  .......-++++.+.++.-+++
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~------NPPYG~r-l~--~~~~l~~ly~~lg~~lk~~~g~  337 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDFKT--------NKINGVLIS------NPPYGER-LL--DDKAVDILYNEMGETFAPLKTW  337 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEE------CCCCTTT-TS--CHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHcCCCCceEEEECChHHCCc--------cCCcCEEEE------CCchhhc-cC--CHHHHHHHHHHHHHHHhhCCCc
Confidence                6787889999999987521        358999997      4444321 10  0111344566677777766677


Q ss_pred             EEEEe
Q 042171          113 QLSHV  117 (125)
Q Consensus       113 ~~~~l  117 (125)
                      ...++
T Consensus       338 ~~~ii  342 (384)
T 3ldg_A          338 SQFIL  342 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77665

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.02  E-value=1.7e-06  Score=61.16  Aligned_cols=59  Identities=10%  Similarity=-0.024  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +..+|||||||+|..+..++      .+++++|..-. +++++.+|+.+. + +     +.++||+|++....
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~-~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l  125 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL-DPRVTVCDMAQV-P-L-----EDESVDVAVFCLSL  125 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS-STTEEESCTTSC-S-C-----CTTCEEEEEEESCC
T ss_pred             CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC-CceEEEeccccC-C-C-----CCCCEeEEEEehhc
Confidence            45789999999999988762      67999992221 678899998763 3 2     24789999987654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.02  E-value=1.3e-06  Score=63.76  Aligned_cols=60  Identities=18%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||||||+|..+..+++.   .++|+++|            ....++++++++|+.+. + +.    ..++| .|+
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-~-~~----~~~~f-~vv   98 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-Q-FP----NKQRY-KIV   98 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-T-CC----CSSEE-EEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhc-C-cc----cCCCc-EEE
Confidence            3458999999999999999987   38899999            11225799999999865 2 21    12578 566


Q ss_pred             Ec
Q 042171           72 MD   73 (125)
Q Consensus        72 id   73 (125)
                      ++
T Consensus        99 ~n  100 (245)
T 1yub_A           99 GN  100 (245)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.00  E-value=5.9e-06  Score=61.41  Aligned_cols=57  Identities=12%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .|.+|||||||+|..++.++   + ..+++++|             .....+.++.+.|.....+        .++||+|
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~--------~~~~Dvv  172 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP--------AEAGDLA  172 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC--------CCBCSEE
T ss_pred             CCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC--------CCCcchH
Confidence            47899999999999999876   4 79999999             2234678888888876532        4689999


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      ++
T Consensus       173 Ll  174 (253)
T 3frh_A          173 LI  174 (253)
T ss_dssp             EE
T ss_pred             HH
Confidence            86

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.98  E-value=2.8e-06  Score=64.86  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=48.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCC----CEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPED----GQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~----~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      ..+|||+|||+|..++.+++.++..    .+++++|               .++  ++.++.+|+.+..+        ..
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~--------~~  200 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLL--------VD  200 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCC--------CC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccc--------cC
Confidence            4689999999999999999987633    7899999               234  58899999875321        46


Q ss_pred             ceeEEEEcCC
Q 042171           66 NFDYAFMDAD   75 (125)
Q Consensus        66 ~fD~v~id~~   75 (125)
                      +||+|+.+..
T Consensus       201 ~fD~Ii~NPP  210 (344)
T 2f8l_A          201 PVDVVISDLP  210 (344)
T ss_dssp             CEEEEEEECC
T ss_pred             CccEEEECCC
Confidence            8999998754

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.93  E-value=9.3e-06  Score=60.82  Aligned_cols=32  Identities=16%  Similarity=-0.033  Sum_probs=25.4

Q ss_pred             CCEEEEEcCcccH----HHHHHHhhCCC---CCEEEEEe
Q 042171            5 LKKTIEIGVFTGY----SLFLTALTIPE---DGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~----~t~~la~~~~~---~~~v~~iD   36 (125)
                      +.+|+|+|||||.    .++.+++.++.   +.+|+++|
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atD  144 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASD  144 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEE
Confidence            4689999999998    56667776552   35899999

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.93  E-value=1.7e-05  Score=59.85  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-----cEEEEecchH-----HHHHHHhh
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-----KINFIESEAL-----SVLDQLLK   59 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-----~i~~~~gd~~-----~~l~~~~~   59 (125)
                      ..+|||||||+|..+..+++. + .++|+++|               .+...     +++++.++..     +.++... 
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~-  125 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF-  125 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC-
T ss_pred             CCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc-
Confidence            569999999999755544443 2 47999999               12111     2677777762     1222110 


Q ss_pred             cCCCCCceeEEEEcC
Q 042171           60 DSENEVNFDYAFMDA   74 (125)
Q Consensus        60 ~~~~~~~fD~v~id~   74 (125)
                         +.++||+|++-.
T Consensus       126 ---~~~~FD~V~~~~  137 (302)
T 2vdw_A          126 ---YFGKFNIIDWQF  137 (302)
T ss_dssp             ---CSSCEEEEEEES
T ss_pred             ---cCCCeeEEEECc
Confidence               247899999743

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.91  E-value=2e-06  Score=64.67  Aligned_cols=60  Identities=8%  Similarity=-0.105  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      .|.+|||||||+|-.++.++...| ..+++++|             ..+..+.++.+.|.....|        ..+||++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p--------~~~~Dva  202 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL--------DEPADVT  202 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC--------CSCCSEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC--------CCCcchH
Confidence            478999999999999999888666 79999999             1223347788888765533        5789999


Q ss_pred             EE
Q 042171           71 FM   72 (125)
Q Consensus        71 ~i   72 (125)
                      ++
T Consensus       203 L~  204 (281)
T 3lcv_B          203 LL  204 (281)
T ss_dssp             EE
T ss_pred             HH
Confidence            87

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.91  E-value=8.3e-06  Score=67.66  Aligned_cols=61  Identities=8%  Similarity=0.060  Sum_probs=46.5

Q ss_pred             CCEEEEEcCcccHHHHHHHh---hCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            5 LKKTIEIGVFTGYSLFLTAL---TIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~---~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ...|||||||+|......++   +.....+|+|||              .++.++|++++||..++  .+      .++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceec--cC------Cccc
Confidence            34799999999999444444   333234799999              57889999999999987  23      4789


Q ss_pred             eEEEEc
Q 042171           68 DYAFMD   73 (125)
Q Consensus        68 D~v~id   73 (125)
                      |+|++.
T Consensus       430 DIIVSE  435 (637)
T 4gqb_A          430 DIIVSE  435 (637)
T ss_dssp             EEEECC
T ss_pred             CEEEEE
Confidence            999973

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.89  E-value=2.4e-05  Score=59.36  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-C-CCcEEEEecchHHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-V-DHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~-~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      .+|++||-||-|.|..+..+++..+ ..+|+.+|                 .+ + .+|++++.+|+...+..      .
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~------~  154 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------T  154 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC------S
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh------c
Confidence            4689999999999999999998654 57899999                 12 2 46899999999988643      2


Q ss_pred             CCceeEEEEcCCC
Q 042171           64 EVNFDYAFMDADK   76 (125)
Q Consensus        64 ~~~fD~v~id~~~   76 (125)
                      .++||+|++|...
T Consensus       155 ~~~yDvIi~D~~d  167 (294)
T 3o4f_A          155 SQTFDVIISDCTD  167 (294)
T ss_dssp             SCCEEEEEESCCC
T ss_pred             cccCCEEEEeCCC
Confidence            5789999999764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.85  E-value=1.4e-05  Score=59.15  Aligned_cols=46  Identities=17%  Similarity=0.083  Sum_probs=35.4

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCC--CcEEEEecchHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVD--HKINFIESEALSV   53 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~--~~i~~~~gd~~~~   53 (125)
                      ..+|||||||+|+.|. +++ .+ ..+|+++|          ..+.  ++++++++|+.+.
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~   79 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred             cCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhC
Confidence            4589999999999999 654 22 34599999          2222  4899999999874

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.81  E-value=3.5e-05  Score=53.09  Aligned_cols=58  Identities=9%  Similarity=0.001  Sum_probs=42.4

Q ss_pred             CCEEEEEcCccc-HHHHHHHhhCCCCCEEEEEe-CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTG-YSLFLTALTIPEDGQITAID-ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G-~~t~~la~~~~~~~~v~~iD-~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +.+|||||||+| ..+.+|++..  +..|+++| ....-.  ++.+|..+-...+      -..||+|+.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--~v~dDiF~P~~~~------Y~~~DLIYs   95 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--IVRDDITSPRMEI------YRGAALIYS   95 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--EECCCSSSCCHHH------HTTEEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--eEEccCCCCcccc------cCCcCEEEE
Confidence            569999999999 5999999853  57899999 322212  8889987643322      147999963

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.79  E-value=4.2e-06  Score=61.96  Aligned_cols=31  Identities=26%  Similarity=0.149  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ++.+|||||||+|..++.+++ .+ ..+|+++|
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~-~~-~~~v~gvD  101 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSAC-SH-FEDITMTD  101 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGG-GG-CSEEEEEC
T ss_pred             CCCeEEEECCCcChHHHHhhc-cC-CCeEEEeC
Confidence            467999999999995444433 22 57999999

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.79  E-value=2.4e-05  Score=57.00  Aligned_cols=31  Identities=23%  Similarity=0.146  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..+.++++. + ..+|+++|
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvD   67 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALD   67 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEc
Confidence            3469999999999999999987 3 35999999

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.70  E-value=1.5e-05  Score=56.53  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      ..+|||||||+|..+..+++.       +++|..       -..+++++.+|+.+. + +     ..++||+|++....
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTAENL-P-L-----KDESFDFALMVTTI  112 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBTTBC-C-S-----CTTCEEEEEEESCG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEcccccC-C-C-----CCCCeeEEEEcchH
Confidence            578999999999999988654       899910       011688999998654 3 2     24689999987653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.67  E-value=2.7e-05  Score=65.38  Aligned_cols=67  Identities=10%  Similarity=-0.056  Sum_probs=47.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC---C---------CCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHh
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI---P---------EDGQITAID--------------ARVDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~---~---------~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~   58 (125)
                      .+.|||||||+|......+++.   +         ...+|+|||              .++.++|++++||+.++-....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            4579999999999975433332   1         235999999              4678899999999998722111


Q ss_pred             hcCCCCCceeEEEEc
Q 042171           59 KDSENEVNFDYAFMD   73 (125)
Q Consensus        59 ~~~~~~~~fD~v~id   73 (125)
                      ..  ..++.|+|++.
T Consensus       490 ~~--~~ekVDIIVSE  502 (745)
T 3ua3_A          490 DR--GFEQPDIIVSE  502 (745)
T ss_dssp             HT--TCCCCSEEEEC
T ss_pred             cC--CCCcccEEEEe
Confidence            10  13689999974

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.66  E-value=0.00024  Score=55.59  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC------C----CCcEEEEecchHHHHHHHhhc
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR------V----DHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~------~----~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      ..|++||-||-|.|..+..+++. + ..+|+.+|            .+      +    .+|++++.+|+.+.+......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35789999999999999998875 4 37899999            11      1    246999999999988754322


Q ss_pred             CCCCCceeEEEEcCC
Q 042171           61 SENEVNFDYAFMDAD   75 (125)
Q Consensus        61 ~~~~~~fD~v~id~~   75 (125)
                         .++||+|++|..
T Consensus       282 ---~~~yDvIIvDl~  293 (381)
T 3c6k_A          282 ---GREFDYVINDLT  293 (381)
T ss_dssp             ---TCCEEEEEEECC
T ss_pred             ---cCceeEEEECCC
Confidence               467999999963

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.60  E-value=0.00012  Score=54.34  Aligned_cols=70  Identities=9%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---CCC----------CCcEEEEec-chHHHHHHHhhcCCCCCceeEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---ARV----------DHKINFIES-EALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---~~~----------~~~i~~~~g-d~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...|||+||++|-|+-+.+...+ ..+|+++|   .+.          .+.|+|+.+ |.... +        ..++|.|
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~-~--------~~~~Dtl  148 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYL-P--------PEKCDTL  148 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGC-C--------CCCCSEE
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeec-C--------CccccEE
Confidence            34899999999999999888765 45899999   111          157999999 87433 2        3679999


Q ss_pred             EEcCCCcCCHHHHh
Q 042171           71 FMDADKDNYCNYMR   84 (125)
Q Consensus        71 ~id~~~~~~~~~~~   84 (125)
                      ++|.....-.+..+
T Consensus       149 lcDIgeSs~~~~vE  162 (267)
T 3p8z_A          149 LCDIGESSPSPTVE  162 (267)
T ss_dssp             EECCCCCCSCHHHH
T ss_pred             EEecCCCCCChhhh
Confidence            99998865444444

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.55  E-value=0.00021  Score=55.45  Aligned_cols=64  Identities=9%  Similarity=-0.019  Sum_probs=50.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CC-----CCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------AR-----VDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~-----~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      ..+|||+|++.|-=|+.||...+ +++|+++|               .+     ...++.+...|+...-+..      .
T Consensus       149 g~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~------~  221 (359)
T 4fzv_A          149 GDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE------G  221 (359)
T ss_dssp             TEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS------T
T ss_pred             CCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc------c
Confidence            35899999999999999998765 68999999               12     2357999999998763322      4


Q ss_pred             CceeEEEEcCC
Q 042171           65 VNFDYAFMDAD   75 (125)
Q Consensus        65 ~~fD~v~id~~   75 (125)
                      +.||.|++|+.
T Consensus       222 ~~fD~VLlDaP  232 (359)
T 4fzv_A          222 DTYDRVLVDVP  232 (359)
T ss_dssp             TCEEEEEEECC
T ss_pred             ccCCEEEECCc
Confidence            78999999964

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.52  E-value=3.1e-05  Score=57.82  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhh--CCC-CCEEEEEe---CCCC---Cc---EEEEec-chHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALT--IPE-DGQITAID---ARVD---HK---INFIES-EALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~--~~~-~~~v~~iD---~~~~---~~---i~~~~g-d~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||+||++|.|+.+.++.  ++. .|.++++|   .++.   ..   +++++| |..+.         +..++|+|
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~---------~~~~~DvV  143 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYK---------PSEISDTL  143 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGS---------CCCCCSEE
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCC---------CCCCCCEE
Confidence            3458999999999999999997  432 36677777   3332   22   466668 88762         13589999


Q ss_pred             EEcCCCc
Q 042171           71 FMDADKD   77 (125)
Q Consensus        71 ~id~~~~   77 (125)
                      ++|.+..
T Consensus       144 LSDMAPn  150 (269)
T 2px2_A          144 LCDIGES  150 (269)
T ss_dssp             EECCCCC
T ss_pred             EeCCCCC
Confidence            9999874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.47  E-value=0.0002  Score=53.87  Aligned_cols=50  Identities=16%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCcc--cHHHHHHHhhCCCCCEEEEEe-------------CCC-CCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFT--GYSLFLTALTIPEDGQITAID-------------ARV-DHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~--G~~t~~la~~~~~~~~v~~iD-------------~~~-~~~i~~~~gd~~~~   53 (125)
                      ...+|||||||+  +..+..+++..-++++|+++|             .+. ..+++++++|..+.
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            457999999997  445566666543389999999             111 24799999999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.45  E-value=0.00016  Score=60.43  Aligned_cols=99  Identities=13%  Similarity=0.016  Sum_probs=64.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC---C--------------------------------------CCCEEEEEe-------
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI---P--------------------------------------EDGQITAID-------   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~---~--------------------------------------~~~~v~~iD-------   36 (125)
                      ...|||.+||+|..++.+|...   +                                      ...+|+++|       
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            4589999999999999877642   1                                      126899999       


Q ss_pred             --------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhc
Q 042171           37 --------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVD  108 (125)
Q Consensus        37 --------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (125)
                              +|+.+.|++.++|+.+..+..     ..++||+|++      +|+|=+.. .  .......-++.+.+.++.
T Consensus       271 ~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~------NPPYG~Rl-g--~~~~l~~ly~~l~~~lk~  336 (703)
T 3v97_A          271 RARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLS------NPPYGERL-D--SEPALIALHSLLGRIMKN  336 (703)
T ss_dssp             HHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEE------CCCCCC------CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEe------CCCccccc-c--chhHHHHHHHHHHHHHHh
Confidence                    788888999999998752211     1237999997      45552200 0  011133445556666654


Q ss_pred             -CCCeEEEEe
Q 042171          109 -DPCVQLSHV  117 (125)
Q Consensus       109 -~~~~~~~~l  117 (125)
                       .|+++..++
T Consensus       337 ~~~g~~~~il  346 (703)
T 3v97_A          337 QFGGWNLSLF  346 (703)
T ss_dssp             HCTTCEEEEE
T ss_pred             hCCCCeEEEE
Confidence             567766665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.45  E-value=0.00019  Score=53.94  Aligned_cols=65  Identities=14%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-------CC-----CcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-------VD-----HKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-------~~-----~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||+|||+|.|+-.+++..+ ...++++|-+       ..     .++..+.+++. ... +     ..++||+|++
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~d-v~~-l-----~~~~~DlVls  146 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTD-IHR-L-----EPVKCDTLLC  146 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCC-TTT-S-----CCCCCSEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccccCcCCCCeEEEeccce-ehh-c-----CCCCccEEEe
Confidence            45899999999999999888654 4567777711       11     13444555542 211 2     2578999999


Q ss_pred             cCCCc
Q 042171           73 DADKD   77 (125)
Q Consensus        73 d~~~~   77 (125)
                      |.+..
T Consensus       147 D~apn  151 (277)
T 3evf_A          147 DIGES  151 (277)
T ss_dssp             CCCCC
T ss_pred             cCccC
Confidence            98775

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.44  E-value=0.00019  Score=59.48  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhC-------CC----CCEEEEEe-------------C---------------------C
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTI-------PE----DGQITAID-------------A---------------------R   38 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~-------~~----~~~v~~iD-------------~---------------------~   38 (125)
                      ++-+|+|+|.|+|++.+.+.++.       |.    ..+++++|             .                     +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999999887754       11    25789999             0                     1


Q ss_pred             -----CCC---cEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcC
Q 042171           39 -----VDH---KINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDN   78 (125)
Q Consensus        39 -----~~~---~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~   78 (125)
                           +.+   +++++.||+.+.++++...  ....+|.+|+|+....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~  183 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPA  183 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC-
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCC
Confidence                 111   5788999999998876311  1367999999987543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.37  E-value=0.00064  Score=51.81  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             CEEEEEcCcccHHHHHHHh---hCCCCCE--EEEEeC------C--------------------CCC--cEEEEecchHH
Q 042171            6 KKTIEIGVFTGYSLFLTAL---TIPEDGQ--ITAIDA------R--------------------VDH--KINFIESEALS   52 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~---~~~~~~~--v~~iD~------~--------------------~~~--~i~~~~gd~~~   52 (125)
                      -+|||+|-|||++++...+   ...+..+  .+++|.      .                    -..  .+++..||+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            4799999999998765433   2233454  577770      0                    012  35678999999


Q ss_pred             HHHHHhhcCCCCCceeEEEEcCC-CcCCHHHHh
Q 042171           53 VLDQLLKDSENEVNFDYAFMDAD-KDNYCNYMR   84 (125)
Q Consensus        53 ~l~~~~~~~~~~~~fD~v~id~~-~~~~~~~~~   84 (125)
                      .++.+.     ..+||++|.|+- .+.+|+.|.
T Consensus       178 ~l~~l~-----~~~~Da~flDgFsP~kNPeLWs  205 (308)
T 3vyw_A          178 RIKEVE-----NFKADAVFHDAFSPYKNPELWT  205 (308)
T ss_dssp             HGGGCC-----SCCEEEEEECCSCTTTSGGGGS
T ss_pred             HHhhhc-----ccceeEEEeCCCCcccCcccCC
Confidence            988762     357999999985 455666555

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.36  E-value=0.00048  Score=51.89  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=43.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-------C-----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-------V-----DHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-------~-----~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||+||++|.|+..+++..+ ...|+++|-+       +     ..++.....++. .. .+     ..+++|+|++
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v~-~l-----~~~~~DvVLS  162 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-VF-NM-----EVIPGDTLLC  162 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-GG-GS-----CCCCCSEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccccccCCCceEEeeCCcc-hh-hc-----CCCCcCEEEe
Confidence            45899999999999999998665 4578888821       1     112233332221 11 12     2578999999


Q ss_pred             cCCCc
Q 042171           73 DADKD   77 (125)
Q Consensus        73 d~~~~   77 (125)
                      |.+..
T Consensus       163 DmApn  167 (282)
T 3gcz_A          163 DIGES  167 (282)
T ss_dssp             CCCCC
T ss_pred             cCccC
Confidence            99875

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.34  E-value=0.00086  Score=50.59  Aligned_cols=69  Identities=7%  Similarity=0.015  Sum_probs=53.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ...+||.+||.|.-|..|++.   +++|+++|          . +. +++++++++..++-..+...  ...++|.|+.|
T Consensus        23 gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~--g~~~vDgIL~D   96 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAAL--GVERVDGILAD   96 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHT--TCSCEEEEEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHc--CCCCcCEEEeC
Confidence            458999999999999999997   68999999          2 33 48999999998763323211  13579999998


Q ss_pred             CCCcCC
Q 042171           74 ADKDNY   79 (125)
Q Consensus        74 ~~~~~~   79 (125)
                      -..+++
T Consensus        97 LGvSS~  102 (285)
T 1wg8_A           97 LGVSSF  102 (285)
T ss_dssp             CSCCHH
T ss_pred             Cccccc
Confidence            776544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.30  E-value=0.00026  Score=53.90  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=50.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCC------------C-CcEEEEec-chHHHHHHHhhcCCCCCceeEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARV------------D-HKINFIES-EALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~------------~-~~i~~~~g-d~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...|||+||++|-|+-+.+...+ ..+|+++|-|-            . .-|+++++ |.... +        ..++|+|
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l-~--------~~~~D~i  164 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYR-P--------SECCDTL  164 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSS-C--------CCCCSEE
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhC-C--------CCCCCEE
Confidence            34899999999999998887765 35799999111            1 34888888 66433 2        3679999


Q ss_pred             EEcCCCcCCHHHHh
Q 042171           71 FMDADKDNYCNYMR   84 (125)
Q Consensus        71 ~id~~~~~~~~~~~   84 (125)
                      ++|.+...-.+..+
T Consensus       165 vcDigeSs~~~~ve  178 (321)
T 3lkz_A          165 LCDIGESSSSAEVE  178 (321)
T ss_dssp             EECCCCCCSCHHHH
T ss_pred             EEECccCCCChhhh
Confidence            99988655444444

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.29  E-value=8.5e-05  Score=58.67  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=46.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCC------------CCCEEEEEe---------------CCCCC-cEEEEecchHHHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIP------------EDGQITAID---------------ARVDH-KINFIESEALSVLDQ   56 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~------------~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~   56 (125)
                      ..+|||.|||+|..++.+++.+.            ...+++++|               .++.. ++.++++|+..... 
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~-  250 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP-  250 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC-
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc-
Confidence            35899999999999999988752            146799999               45532 67889999875421 


Q ss_pred             HhhcCCCCCceeEEEEc
Q 042171           57 LLKDSENEVNFDYAFMD   73 (125)
Q Consensus        57 ~~~~~~~~~~fD~v~id   73 (125)
                             ..+||+|+.+
T Consensus       251 -------~~~fD~Iv~N  260 (445)
T 2okc_A          251 -------STLVDVILAN  260 (445)
T ss_dssp             -------SSCEEEEEEC
T ss_pred             -------cCCcCEEEEC
Confidence                   3589999986

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.05  E-value=0.0019  Score=49.96  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      ...+||..+|.|.-|..|+++++++|+|+++|         ..+ .+|+++++++..++...+... +-.+++|.|+.|-
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~-g~~~~vDgILfDL  136 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER-DLIGKIDGILLDL  136 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT-TCTTCEEEEEEEC
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc-CCCCcccEEEECC
Confidence            35789999999999999999997789999999         222 468999999988764444221 1113699999998


Q ss_pred             CCcCC
Q 042171           75 DKDNY   79 (125)
Q Consensus        75 ~~~~~   79 (125)
                      ..+++
T Consensus       137 GVSS~  141 (347)
T 3tka_A          137 GVSSP  141 (347)
T ss_dssp             SCCHH
T ss_pred             ccCHH
Confidence            77543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.99  E-value=0.0016  Score=53.00  Aligned_cols=65  Identities=12%  Similarity=0.039  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC--CCEEEEEe---------------CCCC-CcEEEEecchHHH-HHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE--DGQITAID---------------ARVD-HKINFIESEALSV-LDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~--~~~v~~iD---------------~~~~-~~i~~~~gd~~~~-l~~~~~~~~~~   64 (125)
                      ...+|+|.+||+|...+.+++.+..  ..+++++|               .++. +++.+..+|.+.. +|..     ..
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~-----~~  295 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQ-----EP  295 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCS-----SC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccc-----cc
Confidence            3459999999999999999998742  57899999               4554 4788999998754 1221     24


Q ss_pred             CceeEEEEc
Q 042171           65 VNFDYAFMD   73 (125)
Q Consensus        65 ~~fD~v~id   73 (125)
                      .+||+|+.+
T Consensus       296 ~~fD~IvaN  304 (542)
T 3lkd_A          296 TNFDGVLMN  304 (542)
T ss_dssp             CCBSEEEEC
T ss_pred             ccccEEEec
Confidence            689999974

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.97  E-value=0.00082  Score=54.59  Aligned_cols=63  Identities=6%  Similarity=-0.067  Sum_probs=47.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC-----------------CCEEEEEe---------------CCCCC----cEEEEec
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE-----------------DGQITAID---------------ARVDH----KINFIES   48 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~-----------------~~~v~~iD---------------~~~~~----~i~~~~g   48 (125)
                      ..+|||.|||+|...+.+++.+..                 ..+++++|               .++..    ++.++.+
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            358999999999999998887532                 13799999               34433    2788999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEc
Q 042171           49 EALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus        49 d~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      |++...+.      ...+||+|+.+
T Consensus       250 DtL~~~~~------~~~~fD~Vv~N  268 (541)
T 2ar0_A          250 NTLGSDGE------NLPKAHIVATN  268 (541)
T ss_dssp             CTTSHHHH------TSCCEEEEEEC
T ss_pred             CCcccccc------cccCCeEEEEC
Confidence            98765322      14679999985

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.96  E-value=0.002  Score=49.18  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=42.2

Q ss_pred             CCEEEEEcC------cccHHHHHHHhhCCCCCEEEEEe-CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            5 LKKTIEIGV------FTGYSLFLTALTIPEDGQITAID-ARVD-HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         5 ~~~vLeiG~------g~G~~t~~la~~~~~~~~v~~iD-~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      ..+|||+|+      .+|.+  .+.+..|+++.|+++| .++. +.-.+++||+.+..        ...+||+|++|.+.
T Consensus       110 gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~--------~~~k~DLVISDMAP  179 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVH--------TANKWDLIISDMYD  179 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEE--------ESSCEEEEEECCCC
T ss_pred             CCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCeEEEccccccc--------cCCCCCEEEecCCC
Confidence            459999995      78873  3444456457999999 2221 11245999976531        14789999999775

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.92  E-value=0.0011  Score=51.41  Aligned_cols=47  Identities=6%  Similarity=-0.002  Sum_probs=39.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      ...|||||.|.|..|..|++... ..+|+++|            . ..++++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccch
Confidence            46899999999999999998653 46899999            3 246899999999765

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.66  E-value=0.0038  Score=47.33  Aligned_cols=65  Identities=11%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCC------------CCc-EEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARV------------DHK-INFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~------------~~~-i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||+||++|.|+-.+++..+ -..|+++|-+.            ..+ +++..+ . +.. .+     ..+++|+|
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~-~-di~-~l-----~~~~~DlV  151 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK-S-NVF-TM-----PTEPSDTL  151 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECS-C-CTT-TS-----CCCCCSEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEeccccccccccccccCCceEEeecC-c-eee-ec-----CCCCcCEE
Confidence            456899999999999999998764 35688888221            112 233322 1 111 12     14789999


Q ss_pred             EEcCCCc
Q 042171           71 FMDADKD   77 (125)
Q Consensus        71 ~id~~~~   77 (125)
                      ++|.+..
T Consensus       152 lsD~APn  158 (300)
T 3eld_A          152 LCDIGES  158 (300)
T ss_dssp             EECCCCC
T ss_pred             eecCcCC
Confidence            9998875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=96.54  E-value=0.00036  Score=50.97  Aligned_cols=31  Identities=26%  Similarity=0.130  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..++.++.. + -.+|+++|
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D   85 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-S-FQDITLSD   85 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEE
T ss_pred             CCceEEEeCCCccHHHHHHHHh-h-hcceeecc
Confidence            3468999999999877665543 1 24799999

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.52  E-value=0.00024  Score=57.81  Aligned_cols=63  Identities=10%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC--------------CCEEEEEe---------------CCCCCcEEEEecchHHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE--------------DGQITAID---------------ARVDHKINFIESEALSVLD   55 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~--------------~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~   55 (125)
                      +.+|||.+||+|...+.+++.+..              ..+++++|               .++..++.+..+|.+.. +
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~  323 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-D  323 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-C
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-c
Confidence            348999999999999888765431              35799999               56665666688887654 2


Q ss_pred             HHhhcCCCCCceeEEEEc
Q 042171           56 QLLKDSENEVNFDYAFMD   73 (125)
Q Consensus        56 ~~~~~~~~~~~fD~v~id   73 (125)
                      ..     ...+||+|+.+
T Consensus       324 ~~-----~~~~fD~Iv~N  336 (544)
T 3khk_A          324 QH-----PDLRADFVMTN  336 (544)
T ss_dssp             SC-----TTCCEEEEEEC
T ss_pred             cc-----ccccccEEEEC
Confidence            11     14689999984

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.35  E-value=0.0042  Score=46.81  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CC--CCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------AR--VDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~--~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ++..+||+=+|||..++.+.+   ...+++.+|          ..  ..++++++.+|+...+..+.+.   ..+||+||
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~---~~~fdLVf  164 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP---PEKRGLIF  164 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSC---TTSCEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCC---CCCccEEE
Confidence            355688999999999988666   257899999          22  2468999999999887766422   35799999


Q ss_pred             EcCCC
Q 042171           72 MDADK   76 (125)
Q Consensus        72 id~~~   76 (125)
                      +|-.-
T Consensus       165 iDPPY  169 (283)
T 2oo3_A          165 IDPSY  169 (283)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.05  E-value=0.0046  Score=52.83  Aligned_cols=32  Identities=19%  Similarity=-0.036  Sum_probs=27.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCC--CCCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIP--EDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~--~~~~v~~iD   36 (125)
                      ..+|||.|||+|...+.+++.++  ...+++++|
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvE  355 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND  355 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEEC
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEE
Confidence            56999999999999999999875  236899999

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.94  E-value=0.012  Score=48.32  Aligned_cols=77  Identities=13%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             CEEEEEcCcccHHHHHHHhhC-------CC----CCEEEEEe-------------C---------------------CC-
Q 042171            6 KKTIEIGVFTGYSLFLTALTI-------PE----DGQITAID-------------A---------------------RV-   39 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~-------~~----~~~v~~iD-------------~---------------------~~-   39 (125)
                      -+|||+|-|+|++.+...++.       |+    .-+++++|             .                     ++ 
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999999876653       11    24589999             0                     10 


Q ss_pred             -------CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC-cCCHHHHh
Q 042171           40 -------DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK-DNYCNYMR   84 (125)
Q Consensus        40 -------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~-~~~~~~~~   84 (125)
                             .-++++..||+.+.++++..+  ....||.+|+|+.- +.+++.|.
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~  198 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWT  198 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhh
Confidence                   124668899999998876311  13679999999863 33444433

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.28  E-value=0.018  Score=45.05  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             CCEEEEEcCcccHHHHHHHhh
Q 042171            5 LKKTIEIGVFTGYSLFLTALT   25 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~   25 (125)
                      +-+|+|+||++|..|+.+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            568999999999999988776

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.81  E-value=0.04  Score=43.06  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCcccHHHHHHH-hhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTA-LTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la-~~~~~~~~v~~iD   36 (125)
                      +...++|||++.|..+++++ +..++.++|+++|
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afE  259 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE  259 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence            45689999999999999998 5566458999999

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.23  E-value=0.05  Score=40.41  Aligned_cols=30  Identities=13%  Similarity=0.002  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ....|||++||+|..++.+++.   +.+++++|
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e  264 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW---GRRALGVE  264 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT---TCEEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHc---CCeEEEEe
Confidence            4568999999999999997764   57899999

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.73  E-value=0.0088  Score=46.38  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             CCEEEEEcCcccHHHHHHHhh---------------CCCCCEEEEEe----------CCCCC-----cEEEEecchHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALT---------------IPEDGQITAID----------ARVDH-----KINFIESEALSVL   54 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~---------------~~~~~~v~~iD----------~~~~~-----~i~~~~gd~~~~l   54 (125)
                      +-+|+|+||++|..|+.+...               -++.-+|+..|          ..+..     +-.++.|......
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            457899999999999876655               23357888999          12221     3355555544321


Q ss_pred             HHHhhcCCCCCceeEEEEcCCCcC
Q 042171           55 DQLLKDSENEVNFDYAFMDADKDN   78 (125)
Q Consensus        55 ~~~~~~~~~~~~fD~v~id~~~~~   78 (125)
                      ..+-    +.+++|+||+..+.++
T Consensus       132 ~rlf----p~~S~d~v~Ss~aLHW  151 (359)
T 1m6e_X          132 GRLF----PRNTLHFIHSSYSLMW  151 (359)
T ss_dssp             SCCS----CTTCBSCEEEESCTTB
T ss_pred             hccC----CCCceEEEEehhhhhh
Confidence            1221    2689999999876543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.70  E-value=0.8  Score=31.72  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKD   77 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~   77 (125)
                      +.-|||+|-|.|-.=-.|.+.+| +-+|+.+|       +-..+.-.++.||+.+.+|....-.  ..+.-++..|-...
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~--g~~a~LaHaD~G~g  117 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERF--GATASLVHADLGGH  117 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHH--CSCEEEEEECCCCS
T ss_pred             CCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhc--CCceEEEEeecCCC
Confidence            56799999999999999999998 79999999       2233455689999999988742110  35677888776543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=92.61  E-value=0.031  Score=37.69  Aligned_cols=61  Identities=10%  Similarity=-0.100  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ...+|||||||...  +-+...+-+.++     .....+++++.+|+.+. +.. .  -+.++||+|++...
T Consensus        12 ~g~~vL~~~~g~v~--vD~s~~ml~~a~-----~~~~~~~~~~~~d~~~~-~~~-~--~~~~~fD~V~~~~~   72 (176)
T 2ld4_A           12 AGQFVAVVWDKSSP--VEALKGLVDKLQ-----ALTGNEGRVSVENIKQL-LQS-A--HKESSFDIILSGLV   72 (176)
T ss_dssp             TTSEEEEEECTTSC--HHHHHHHHHHHH-----HHTTTTSEEEEEEGGGG-GGG-C--CCSSCEEEEEECCS
T ss_pred             CCCEEEEecCCcee--eeCCHHHHHHHH-----HhcccCcEEEEechhcC-ccc-c--CCCCCEeEEEECCh
Confidence            35699999998732  111111000000     01223588999999865 320 0  01578999998543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=91.41  E-value=0.092  Score=40.81  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             CCEEEEEcCcccHHHHHHHh--------hC------CCCCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTAL--------TI------PEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~--------~~------~~~~~v~~iD   36 (125)
                      +-+|+|+||++|..|+.++.        ..      ++.-+|.--|
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nD   98 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSD   98 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEE
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecC
Confidence            56899999999999998732        21      2357888888

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=89.54  E-value=0.11  Score=41.95  Aligned_cols=65  Identities=9%  Similarity=-0.001  Sum_probs=43.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCC------------CCEEEEEe---------------CCCCCcEEEEecchHHHHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPE------------DGQITAID---------------ARVDHKINFIESEALSVLDQL   57 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~------------~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~   57 (125)
                      ..+|+|-+||||...+...+.+..            ...++++|               .+. +.-.+..+|.+.. |..
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~-~~~~I~~~dtL~~-~~~  295 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL-EYPRIDPENSLRF-PLR  295 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC-SCCEEECSCTTCS-CGG
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC-ccccccccccccC-chh
Confidence            458999999999999988776532            24699999               344 2345677887643 111


Q ss_pred             hhcCCCCCceeEEEEc
Q 042171           58 LKDSENEVNFDYAFMD   73 (125)
Q Consensus        58 ~~~~~~~~~fD~v~id   73 (125)
                       .. .+..+||+|+.+
T Consensus       296 -~~-~~~~~fD~Il~N  309 (530)
T 3ufb_A          296 -EM-GDKDRVDVILTN  309 (530)
T ss_dssp             -GC-CGGGCBSEEEEC
T ss_pred             -hh-cccccceEEEec
Confidence             00 123579999974

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.61  E-value=0.74  Score=34.76  Aligned_cols=31  Identities=26%  Similarity=0.257  Sum_probs=25.4

Q ss_pred             CCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            5 LKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      .++||.+|+|. |..++.+|++.+ -.+|+++|
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~  222 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVD  222 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence            46899999886 889999999874 23799998

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=87.33  E-value=1.1  Score=34.22  Aligned_cols=32  Identities=13%  Similarity=-0.071  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||.+|+|. |..++.+|++.+ -.+|+++|
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~  217 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGD  217 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence            346899999987 889999999874 23899998

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=86.32  E-value=2  Score=31.89  Aligned_cols=31  Identities=16%  Similarity=0.072  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ..++||-+|+|. |..++.+|++.+  .+|+++|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~  197 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMG--LRVAAVD  197 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEe
Confidence            456899999875 999999999874  6999998

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.76  E-value=1  Score=33.70  Aligned_cols=32  Identities=22%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+|. |..++.+|++.+ -.+|+++|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~  198 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVG  198 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence            356899999876 888889998874 23899999

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=85.68  E-value=0.71  Score=35.01  Aligned_cols=65  Identities=12%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +.+|+|+-||.|..++.+.++--+--.|+++|          ..+ ....++.+|..+..+....    ...+|+|+.+-
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-~~~~~~~~Di~~~~~~~~~----~~~~D~l~~gp   76 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-PHTQLLAKTIEGITLEEFD----RLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-TTSCEECSCGGGCCHHHHH----HHCCSEEEECC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-cccccccCCHHHccHhHcC----cCCcCEEEEcC
Confidence            45899999999999999988621012589999          222 2345778898876432110    12699999863

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=85.65  E-value=1.9  Score=31.72  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC---CCC---------------CcEEEEecchHHH--HHHHhhcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA---RVD---------------HKINFIESEALSV--LDQLLKDS   61 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~---~~~---------------~~i~~~~gd~~~~--l~~~~~~~   61 (125)
                      .+.++||-.| |+|+.+..+++.+- .+.+|++++.   +..               .+++++.+|..+.  +..+    
T Consensus        23 ~~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----   97 (351)
T 3ruf_A           23 FSPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV----   97 (351)
T ss_dssp             HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH----
T ss_pred             CCCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH----
Confidence            4567899888 46888888888763 3578999981   110               5799999998753  2332    


Q ss_pred             CCCCceeEEEEcCCC
Q 042171           62 ENEVNFDYAFMDADK   76 (125)
Q Consensus        62 ~~~~~fD~v~id~~~   76 (125)
                        -..+|.||.-++.
T Consensus        98 --~~~~d~Vih~A~~  110 (351)
T 3ruf_A           98 --MKGVDHVLHQAAL  110 (351)
T ss_dssp             --TTTCSEEEECCCC
T ss_pred             --hcCCCEEEECCcc
Confidence              2469999987764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=85.39  E-value=2  Score=31.93  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+|. |..++.+|++.+ ..+|+++|
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~  203 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVD  203 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence            346899999875 888899999875 57999998

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=84.82  E-value=1.2  Score=32.13  Aligned_cols=30  Identities=7%  Similarity=0.011  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +...|||..||+|..++...+.   +.+++++|
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e  241 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL---GRNFIGCD  241 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT---TCEEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHc---CCeEEEEe
Confidence            4568999999999999887764   57899998

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.51  E-value=2.5  Score=31.68  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+|. |..++.+|++.+ -.+|+++|
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~  203 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTD  203 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence            346899999875 888999999874 23899998

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=84.01  E-value=1.8  Score=33.36  Aligned_cols=65  Identities=9%  Similarity=-0.023  Sum_probs=43.7

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCE-EEEEe----------CCCCCcEEEEecchHHHHHH-HhhcCCCCCceeEEEEc
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQ-ITAID----------ARVDHKINFIESEALSVLDQ-LLKDSENEVNFDYAFMD   73 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~-v~~iD----------~~~~~~i~~~~gd~~~~l~~-~~~~~~~~~~fD~v~id   73 (125)
                      -+++|+-||.|-.++-+.++   +.+ +.++|          ..+ ....++.+|..+..+. +.........+|+|+.+
T Consensus         3 ~~vidLFsG~GGlslG~~~a---G~~~v~avE~d~~a~~t~~~N~-~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg   78 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA---GFDVKMAVEIDQHAINTHAINF-PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG   78 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH---TCEEEEEECSCHHHHHHHHHHC-TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred             CeEEEEccCcCHHHHHHHHC---CCcEEEEEeCCHHHHHHHHHhC-CCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence            47999999999999999887   454 67999          223 3467788888765322 10000013579999986


Q ss_pred             C
Q 042171           74 A   74 (125)
Q Consensus        74 ~   74 (125)
                      .
T Consensus        79 p   79 (376)
T 3g7u_A           79 P   79 (376)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=82.85  E-value=8.3  Score=28.39  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=42.2

Q ss_pred             CCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFT-GYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+||-+|+|. |..++.+++... +.+|+++|           .+...-+.....|..+.+..+.    ....+|.++.
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t----~g~g~d~~~~  238 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKIT----GGLGVQSAIV  238 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHT----TSSCEEEEEE
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhc----CCCCceEEEE
Confidence            46899999876 456666777665 68999999           3333334445556655554442    1346888887


Q ss_pred             cCCC
Q 042171           73 DADK   76 (125)
Q Consensus        73 d~~~   76 (125)
                      +...
T Consensus       239 ~~~~  242 (348)
T 4eez_A          239 CAVA  242 (348)
T ss_dssp             CCSC
T ss_pred             eccC
Confidence            6544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=81.72  E-value=4.3  Score=30.79  Aligned_cols=32  Identities=13%  Similarity=-0.003  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+|. |..++.+|++.+ -.+|+++|
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~  217 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGD  217 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEc
Confidence            346899999866 888999999875 23799998

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=81.28  E-value=1.7  Score=32.84  Aligned_cols=32  Identities=9%  Similarity=-0.124  Sum_probs=25.4

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+|. |..++.+|++.+ -.+|++++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~  214 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAG-ATTVILST  214 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence            346899999876 888889999875 24899998

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=81.20  E-value=1.1  Score=33.01  Aligned_cols=29  Identities=14%  Similarity=0.121  Sum_probs=22.8

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171           41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus        41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      .++++++||+.+.++.+     +.++||+|++|-
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdP   48 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSP   48 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECC
Confidence            46899999999987655     257899999863

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=80.07  E-value=1.5  Score=32.90  Aligned_cols=30  Identities=10%  Similarity=0.210  Sum_probs=24.2

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171           41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus        41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      ++.++++||+.+.++.+     +.++||+||+|-.
T Consensus        13 ~~~~ii~gD~~~~l~~l-----~~~svDlI~tDPP   42 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF-----PEESISLVMTSPP   42 (323)
T ss_dssp             SSEEEEESCHHHHGGGS-----CSSCEEEEEECCC
T ss_pred             CCceEEeCcHHHHHhhC-----CCCCeeEEEECCC
Confidence            56889999999887755     2578999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	2e-09
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	5e-06
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	0.002

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 42/165 (25%)

Query: 3   LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
           +  K T+EIGV+TGYSL  TAL IPEDG+I A+D               A VDHKI+F E
Sbjct: 58  INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE 117

Query: 48  SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM------------------------ 83
             AL VLD+++KD +N  ++D+ F+DADKDNY NY                         
Sbjct: 118 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSV 177

Query: 84  ---REQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
               +     +    +  +L+LN++L  DP +++  + +G+ + I
Sbjct: 178 VAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITI 222

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-06
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 37/159 (23%)

Query: 3   LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR---------------VDHKINFIE 47
           ++ KK +++G FTGYS    AL +P DG++   +                  +HKI+   
Sbjct: 58  IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL 117

Query: 48  SEALSVLDQLLKDSENEVNFDYAFMDADKDNY---------------------CNYMREQ 86
             AL  LD+LL   E    FD A +DADK+N                        +  + 
Sbjct: 118 KPALETLDELLAAGEAG-TFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKV 176

Query: 87  VPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
           +       + + + +LN  +  D  V +S + LG+ + +
Sbjct: 177 LQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTL 215

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 2   RLKLKKTIEIGVFTGYSLFLTA---LTIPEDGQITAIDARVD------HKINFIESEALS 52
            L+ +  +E+GV+ G SL         +  D Q+  ID  +         +  I      
Sbjct: 78  ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGD 137

Query: 53  VLDQLLKDSENEVNFDYAFMDADKDNYCNYM 83
             D    +   E+     F+D    N  N M
Sbjct: 138 CSDLTTFEHLREMAHPLIFIDNAHANTFNIM 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.97
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.96
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.84
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.33
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.25
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.2
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.18
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.17
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.16
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.15
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.13
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.11
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.09
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.07
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.05
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.02
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.01
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.98
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.95
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.95
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.93
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.92
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.92
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.92
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.88
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.83
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.83
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.82
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.82
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.82
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.78
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.77
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.77
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.76
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.73
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.72
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.72
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.72
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.71
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.69
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.68
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.68
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.67
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.64
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.63
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.62
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.62
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.62
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.62
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.59
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.58
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.58
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.54
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.47
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.39
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.29
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.28
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.24
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.2
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.2
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.19
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.17
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.14
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.13
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.11
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.11
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.01
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.0
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.0
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.99
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.97
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.96
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.9
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.86
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.83
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.82
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.79
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.77
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.56
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.56
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.39
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.35
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.11
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.04
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	96.74
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.48
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.47
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.45
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.34
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.27
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.42
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.36
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.05
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	91.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.01
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.28
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	86.86
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.23
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.63
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.14
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.05
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.04
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	82.12
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	82.11
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	82.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.83
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.72
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.51
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	80.06

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-30  Score=186.05  Aligned_cols=122  Identities=33%  Similarity=0.547  Sum_probs=105.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|++|||||||+||||+|||++++++|+|+++|               +++.++++++.|++.+.++.+..+ +..++|
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~-~~~~~f  136 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTF  136 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh-cccCCc
Confidence            5899999999999999999999999899999999               788899999999999998876443 125789


Q ss_pred             eEEEEcCCCcCCHHHHhhh--------------C------C-CCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171           68 DYAFMDADKDNYCNYMREQ--------------V------P-DHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI  125 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~~--------------~------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i  125 (125)
                      ||||+|+++++|..|++..              +      . +..++....++++||+.|++||+|++++||+|||++|
T Consensus       137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~i  215 (219)
T d2avda1         137 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTL  215 (219)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEE
Confidence            9999999999999999821              1      1 1122358889999999999999999999999999875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=6.1e-30  Score=187.14  Aligned_cols=123  Identities=47%  Similarity=0.827  Sum_probs=104.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|++||||||++||||+|||+++|++|+|+++|               +|+.++|+++.|++.+.++.+..+....++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4799999999999999999999999899999999               7888999999999999999886542224689


Q ss_pred             eEEEEcCCCcCCHHHHhh--------------hC--------CCCCC-c----chHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171           68 DYAFMDADKDNYCNYMRE--------------QV--------PDHFR-G----SSKQAILDLNRSLVDDPCVQLSHVALG  120 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~~--------------~~--------~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~lp~~  120 (125)
                      ||||+|++|.+|++||+.              |+        +.... .    ...+++++||+.|.+||+|++++||+|
T Consensus       138 D~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPig  217 (227)
T d1susa1         138 DFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG  217 (227)
T ss_dssp             SEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECST
T ss_pred             eEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecC
Confidence            999999999999999982              21        11111 1    135679999999999999999999999


Q ss_pred             CcccC
Q 042171          121 ESVDI  125 (125)
Q Consensus       121 ~G~~i  125 (125)
                      ||++|
T Consensus       218 DGl~i  222 (227)
T d1susa1         218 DGITI  222 (227)
T ss_dssp             TCEEE
T ss_pred             CeeEE
Confidence            99975

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=8.1e-22  Score=142.30  Aligned_cols=122  Identities=16%  Similarity=0.263  Sum_probs=95.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+|++|||||||+|+||+|||++++++++|+++|               +|+.++|++++||+.+.++.+.... ...+|
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~-~~~~~  133 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY-DVDTL  133 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHS-CCCCE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcc-ccccc
Confidence            4789999999999999999999998889999999               6888999999999999988875432 24689


Q ss_pred             eEEEEcCCCcCCHHHHh--hhCC---CC----CCcchHHHHHHHHHHhhcCCCeEEEE-------eecCCcccC
Q 042171           68 DYAFMDADKDNYCNYMR--EQVP---DH----FRGSSKQAILDLNRSLVDDPCVQLSH-------VALGESVDI  125 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~--~~~~---~~----~~~~~~~~~~~~~~~l~~~~~~~~~~-------lp~~~G~~i  125 (125)
                      |+||+|+++..|..++.  ...+   +.    .++...++..++++++++.+++.+..       +|++||+++
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~  207 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEK  207 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhccCceeehhhhhcceecccCCceEE
Confidence            99999999999887544  1111   00    01111223567888999999998776       688999864

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.35  E-value=2.4e-12  Score=89.49  Aligned_cols=72  Identities=19%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|+.++++|+.   .++|+++|               .++.++|+++++|+.+.+..       ...||
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~-------~~~~D  102 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IPDID  102 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SCCEE
T ss_pred             CCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc-------cCCcC
Confidence            4569999999999999999875   46899999               67888999999999887542       47899


Q ss_pred             EEEEcCCCcCCHHHHhh
Q 042171           69 YAFMDADKDNYCNYMRE   85 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~   85 (125)
                      .||++.......++++.
T Consensus       103 ~v~~~~~~~~~~~~~~~  119 (186)
T d1l3ia_         103 IAVVGGSGGELQEILRI  119 (186)
T ss_dssp             EEEESCCTTCHHHHHHH
T ss_pred             EEEEeCccccchHHHHH
Confidence            99999988777777764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.2e-12  Score=93.32  Aligned_cols=73  Identities=18%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+||+|.+||+.+++.++|+++|               .++ +++.++.+|+.+.++.       .++||
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~-------~~~fD  146 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPE-------FSPYD  146 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GCCEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHcccc-------ccchh
Confidence            455999999999999999999998789999999               344 6888999999876553       47899


Q ss_pred             EEEEcCCCcCCHH-HHh
Q 042171           69 YAFMDADKDNYCN-YMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~-~~~   84 (125)
                      .|++++..++.++ +++
T Consensus       147 ~I~~~~~~~~~p~~l~~  163 (213)
T d1dl5a1         147 VIFVTVGVDEVPETWFT  163 (213)
T ss_dssp             EEEECSBBSCCCHHHHH
T ss_pred             hhhhhccHHHhHHHHHH
Confidence            9999988777654 444

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.8e-12  Score=92.18  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC----CCcEEEEecchHHHHHHHhhcCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV----DHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~----~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +..+|||||||+||.|..||+.+++.++|+++|               .++    ..+++++.+|+.+.++.       .
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-------~  148 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------E  148 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------G
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-------h
Confidence            346999999999999999999988789999999               121    25799999999876553       4


Q ss_pred             CceeEEEEcCCCcCCHH-HHh
Q 042171           65 VNFDYAFMDADKDNYCN-YMR   84 (125)
Q Consensus        65 ~~fD~v~id~~~~~~~~-~~~   84 (125)
                      .+||.|++++.....++ +++
T Consensus       149 ~~fD~I~~~~~~~~ip~~l~~  169 (224)
T d1i1na_         149 APYDAIHVGAAAPVVPQALID  169 (224)
T ss_dssp             CCEEEEEECSBBSSCCHHHHH
T ss_pred             hhhhhhhhhcchhhcCHHHHh
Confidence            78999999998777655 444

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=4.4e-12  Score=91.22  Aligned_cols=73  Identities=12%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC-----CCEEEEEe--------C------------CCCCcEEEEecchHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE-----DGQITAID--------A------------RVDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~-----~~~v~~iD--------~------------~~~~~i~~~~gd~~~~l~~~~   58 (125)
                      +..+|||||||+||.|..|++.+++     .++|+++|        +            +. .+++++++|+.+.++.  
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~--  156 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP--  156 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG--
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEeccccccccc--
Confidence            4569999999999999999998643     35899999        0            12 4799999999887554  


Q ss_pred             hcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171           59 KDSENEVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~~~~~~~~~~   84 (125)
                           ..+||.|+++++....++.+.
T Consensus       157 -----~~~fD~Iiv~~a~~~~p~~l~  177 (223)
T d1r18a_         157 -----NAPYNAIHVGAAAPDTPTELI  177 (223)
T ss_dssp             -----GCSEEEEEECSCBSSCCHHHH
T ss_pred             -----ccceeeEEEEeechhchHHHH
Confidence                 478999999999877765544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.18  E-value=1.4e-11  Score=89.96  Aligned_cols=99  Identities=13%  Similarity=0.087  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|+.|++||++++++|+|+++|               .+...+++++++|..+.++        +.+||
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--------~~~fD  156 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--------DQMYD  156 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--------SCCEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--------cceee
Confidence            346999999999999999999987789999999               3455789999999987643        57899


Q ss_pred             EEEEcCCCc-CCHHHHhhhCCCC----CCcchHHHHHHHHHHhhcCC
Q 042171           69 YAFMDADKD-NYCNYMREQVPDH----FRGSSKQAILDLNRSLVDDP  110 (125)
Q Consensus        69 ~v~id~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~  110 (125)
                      .||+|...+ .+.+.....+.+.    .-......+.+..+.+++.+
T Consensus       157 ~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~g  203 (250)
T d1yb2a1         157 AVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG  203 (250)
T ss_dssp             EEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT
T ss_pred             eeeecCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCC
Confidence            999986543 2222222111110    00013455677777777654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.17  E-value=2.6e-11  Score=87.20  Aligned_cols=70  Identities=20%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+||.|..||+..   ++|+++|             ... .+++++.+|....++.       ..+||.|
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~~g~~~-------~~pfD~I  138 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLGYEE-------EKPYDRV  138 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGCCGG-------GCCEEEE
T ss_pred             ccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc-cccccccCchhhcchh-------hhhHHHH
Confidence            45699999999999999999973   7899999             333 6899999999876553       4789999


Q ss_pred             EEcCCCcCCHHHHh
Q 042171           71 FMDADKDNYCNYMR   84 (125)
Q Consensus        71 ~id~~~~~~~~~~~   84 (125)
                      ++.+..+..++.+-
T Consensus       139 iv~~a~~~ip~~l~  152 (224)
T d1vbfa_         139 VVWATAPTLLCKPY  152 (224)
T ss_dssp             EESSBBSSCCHHHH
T ss_pred             HhhcchhhhhHHHH
Confidence            99988777765443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=2.2e-11  Score=87.15  Aligned_cols=71  Identities=14%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+||+|..||+.+  +++|+++|               .++ ++++++++|+.+.++.       ..+||
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~-------~~pfD  147 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPP-------KAPYD  147 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG-------GCCEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcc-------cCcce
Confidence            45699999999999999999876  47899999               455 7999999999886554       58999


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      .|++.++....|+.+-
T Consensus       148 ~Iiv~~a~~~ip~~l~  163 (215)
T d1jg1a_         148 VIIVTAGAPKIPEPLI  163 (215)
T ss_dssp             EEEECSBBSSCCHHHH
T ss_pred             eEEeecccccCCHHHH
Confidence            9999999877665444

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=3.8e-11  Score=88.29  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARVDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      ...+|||+|||+|+.|++||+++.++|+|+++|                 ....++++++++|+.+.  .+     ++++
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~-----~~~~  168 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--EL-----PDGS  168 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CC-----CTTC
T ss_pred             CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--cc-----cCCC
Confidence            456999999999999999999998799999999                 23457999999999864  12     2688


Q ss_pred             eeEEEEcCCC
Q 042171           67 FDYAFMDADK   76 (125)
Q Consensus        67 fD~v~id~~~   76 (125)
                      ||.||+|...
T Consensus       169 fDaV~ldlp~  178 (264)
T d1i9ga_         169 VDRAVLDMLA  178 (264)
T ss_dssp             EEEEEEESSC
T ss_pred             cceEEEecCC
Confidence            9999998654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4.4e-11  Score=85.68  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      ..+|||||||+|..+..+++..  +++|++||               .++.++|+++++|+.+..+        +++||+
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~--------~~~fD~  103 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NEKCDV  103 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SSCEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc--------cCceeE
Confidence            4699999999999999999876  47999999               5788899999999987532        578999


Q ss_pred             EEEcCCC---cCCHHHHh
Q 042171           70 AFMDADK---DNYCNYMR   84 (125)
Q Consensus        70 v~id~~~---~~~~~~~~   84 (125)
                      |++-...   .+...+++
T Consensus       104 v~~~~~~~~~~d~~~~l~  121 (245)
T d1nkva_         104 AACVGATWIAGGFAGAEE  121 (245)
T ss_dssp             EEEESCGGGTSSSHHHHH
T ss_pred             EEEEehhhccCCHHHHHH
Confidence            9975442   23455555

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.5e-11  Score=89.28  Aligned_cols=68  Identities=13%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------------------CCCCCcEEEEecchHHHHHHHh
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------------------ARVDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------------------~~~~~~i~~~~gd~~~~l~~~~   58 (125)
                      ...+|||+|||+|+.|++||+++.++|+|+++|                         .+..++++++++|..+....+ 
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~-  176 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI-  176 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc-
Confidence            457999999999999999999998799999999                         234578999999987654333 


Q ss_pred             hcCCCCCceeEEEEcCCC
Q 042171           59 KDSENEVNFDYAFMDADK   76 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~~   76 (125)
                          ...+||.||+|...
T Consensus       177 ----~~~~fD~V~LD~p~  190 (324)
T d2b25a1         177 ----KSLTFDAVALDMLN  190 (324)
T ss_dssp             --------EEEEEECSSS
T ss_pred             ----CCCCcceEeecCcC
Confidence                14689999998653

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.09  E-value=1.2e-10  Score=84.14  Aligned_cols=73  Identities=25%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe---------CCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTI---PEDGQITAID---------ARVDHKINFIESEALS--VLDQLLKDSENEVNFD   68 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD---------~~~~~~i~~~~gd~~~--~l~~~~~~~~~~~~fD   68 (125)
                      .+|++|||||++.|.|+++++..+   ..+++|+++|         ....++|++++||+.+  .+..+     ....+|
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l-----~~~~~d  153 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL-----REMAHP  153 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG-----SSSCSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHH-----HhcCCC
Confidence            479999999999999999998654   4579999999         1223789999999864  33333     245799


Q ss_pred             EEEEcCCCcCCH
Q 042171           69 YAFMDADKDNYC   80 (125)
Q Consensus        69 ~v~id~~~~~~~   80 (125)
                      +||+|++|....
T Consensus       154 lIfID~~H~~~~  165 (232)
T d2bm8a1         154 LIFIDNAHANTF  165 (232)
T ss_dssp             EEEEESSCSSHH
T ss_pred             EEEEcCCcchHH
Confidence            999999986543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=8e-11  Score=86.95  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++.+|||+|||+|+.++.+++..| +.+|+++|               .++ ++|+++++|..+.++        ..+|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~--------~~~f  176 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALA--------GQQF  176 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGT--------TCCE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccC--------CCce
Confidence            4567899999999999999999998 79999999               445 579999999987643        4689


Q ss_pred             eEEEEcCCCcCCHHHHh
Q 042171           68 DYAFMDADKDNYCNYMR   84 (125)
Q Consensus        68 D~v~id~~~~~~~~~~~   84 (125)
                      |+|++      +|+|+.
T Consensus       177 DlIvs------NPPYi~  187 (274)
T d2b3ta1         177 AMIVS------NPPYID  187 (274)
T ss_dssp             EEEEE------CCCCBC
T ss_pred             eEEEe------cchhhh
Confidence            99997      566654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.05  E-value=3.6e-10  Score=76.19  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.++|||+|||+|..++.++.+-  ..+|+++|               .++.++++++++|+.+.++..      .++||
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~------~~~fD   85 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGRFD   85 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSCEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc------ccccc
Confidence            56799999999999999877652  35999999               567788999999999887653      57899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +||+|.
T Consensus        86 iIf~DP   91 (152)
T d2esra1          86 LVFLDP   91 (152)
T ss_dssp             EEEECC
T ss_pred             eeEech
Confidence            999974

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=2.5e-10  Score=83.75  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|||+|+.|++||++++++|+|+++|               .++.+++++..+|..+.++        ...||
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~--------~~~~D  174 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EKDVD  174 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CCSEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc--------cccee
Confidence            456999999999999999999998789999999               6777899999999755422        57899


Q ss_pred             EEEEcCCCcCCHHHHhh---hCCCCC----CcchHHHHHHHHHHhhcC
Q 042171           69 YAFMDADKDNYCNYMRE---QVPDHF----RGSSKQAILDLNRSLVDD  109 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~l~~~  109 (125)
                      .||+|...  .+.+++.   .+.+..    -......+.++.+.+++.
T Consensus       175 ~V~~d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~  220 (266)
T d1o54a_         175 ALFLDVPD--PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQEL  220 (266)
T ss_dssp             EEEECCSC--GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred             eeEecCCC--HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHC
Confidence            99998654  2333332   221100    001445567777777654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.8e-10  Score=80.42  Aligned_cols=68  Identities=18%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ...+|||||||+|+++.++++..+  .++++||             .....++.++.+++.+....+     +.++||.|
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fD~i  125 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----PDGHFDGI  125 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----CTTCEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccc-----ccccccce
Confidence            456999999999999999998643  6899999             234467899999998875554     25789999


Q ss_pred             EEcCCCcC
Q 042171           71 FMDADKDN   78 (125)
Q Consensus        71 ~id~~~~~   78 (125)
                      +.|.....
T Consensus       126 ~fD~~~~~  133 (229)
T d1zx0a1         126 LYDTYPLS  133 (229)
T ss_dssp             EECCCCCB
T ss_pred             eecccccc
Confidence            99976543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.00  E-value=2.1e-10  Score=84.20  Aligned_cols=67  Identities=24%  Similarity=0.307  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      .+|.+|||||||+|..++.+++.++++++|+++|             .....+++++++|+.+. + +      .++||+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~-~------~~~fD~   97 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-E-L------NDKYDI   97 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-C-C------SSCEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-c-c------cCCceE
Confidence            4788999999999999999999998778999999             22334799999998764 2 2      367999


Q ss_pred             EEEcCCCc
Q 042171           70 AFMDADKD   77 (125)
Q Consensus        70 v~id~~~~   77 (125)
                      |++.....
T Consensus        98 v~~~~~l~  105 (281)
T d2gh1a1          98 AICHAFLL  105 (281)
T ss_dssp             EEEESCGG
T ss_pred             EEEehhhh
Confidence            99976644

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.98  E-value=1.4e-09  Score=76.90  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..|||||||+|.+++.+|+..| +..++++|               .++ ++|.++.+|+.+.+..+     +.+++|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhccc-----Cchhhhcc
Confidence            4789999999999999999988 79999999               566 68999999999876555     25789999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++-..
T Consensus       104 ~i~fp  108 (204)
T d2fcaa1         104 YLNFS  108 (204)
T ss_dssp             EEESC
T ss_pred             ccccc
Confidence            98543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.95  E-value=3.3e-10  Score=82.65  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..|++..  +.+|+++|               .++.++++++.+|+.+. | +     +.++||
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~-----~~~sfD  137 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNSYD  137 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTCEE
T ss_pred             CCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-c-----cccccc
Confidence            45799999999999999999875  47999999               57788999999999875 3 2     257899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++-..
T Consensus       138 ~V~~~~~  144 (282)
T d2o57a1         138 FIWSQDA  144 (282)
T ss_dssp             EEEEESC
T ss_pred             hhhccch
Confidence            9998544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.95  E-value=4.8e-10  Score=78.79  Aligned_cols=64  Identities=9%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||+|..+..+++.   ..+|+++|               .+. ++++++++|+.+. | +     +.++||
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l-~-~-----~~~~fD   83 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQM-P-F-----TDERFH   83 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CC-C-S-----CTTCEE
T ss_pred             CcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccc-ccccccccccccc-c-c-----cccccc
Confidence            3579999999999999999986   46899999               233 6899999999875 4 2     258899


Q ss_pred             EEEEcCCCcC
Q 042171           69 YAFMDADKDN   78 (125)
Q Consensus        69 ~v~id~~~~~   78 (125)
                      +|++-..-.+
T Consensus        84 ~v~~~~~l~~   93 (231)
T d1vl5a_          84 IVTCRIAAHH   93 (231)
T ss_dssp             EEEEESCGGG
T ss_pred             cccccccccc
Confidence            9998765443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.93  E-value=9.2e-10  Score=79.36  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.++|||||||+|..++.++++.| +.+++.+|              .++.++++++.+|..+..         ..+||+
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~~~~D~  149 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKADA  149 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhc---------ccchhh
Confidence            467999999999999999999998 78999999              577889999999986532         256999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++....+++
T Consensus       150 v~~~~vlh~~  159 (253)
T d1tw3a2         150 IILSFVLLNW  159 (253)
T ss_dssp             EEEESCGGGS
T ss_pred             eeeccccccC
Confidence            9987665444

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=5.6e-10  Score=79.16  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..+..+++.   .++|+++|               .++ +++.++++|+.+. | +     ++++||
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~-~-~-----~~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL-P-F-----PDDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC-C-S-----CTTCEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc-c-c-----cccccc
Confidence            3469999999999999999987   36899999               234 6799999999874 4 3     258899


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      +|++-..-.
T Consensus        85 ~v~~~~~l~   93 (234)
T d1xxla_          85 IITCRYAAH   93 (234)
T ss_dssp             EEEEESCGG
T ss_pred             eeeeeceee
Confidence            999866543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.92  E-value=6.8e-10  Score=78.54  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      .++.+|||||||+|..+..+++.   +.+|++||          ....++++++++++.+..  +      +++||+|++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~--~------~~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--L------PRRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--C------SSCEEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccccccccccccccccc--c------ccccccccc
Confidence            36789999999999999999875   46799999          224567999999987652  2      478999997


Q ss_pred             cCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCeEEEEee
Q 042171           73 DADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVA  118 (125)
Q Consensus        73 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp  118 (125)
                      -.--    +++        .+ ....+++..+++.+..++-+..+|
T Consensus        88 ~~vl----eh~--------~d-~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          88 THVL----EHI--------DD-PVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             ESCG----GGC--------SS-HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccee----Eec--------CC-HHHHHHHHHHHhcCCCceEEEEeC
Confidence            3321    111        11 334455555555555565555555

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.92  E-value=1e-09  Score=76.18  Aligned_cols=63  Identities=13%  Similarity=0.144  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .++.+|||||||+|..+.+|++.   +.+|+++|               .++ +++++..+|..+..+        +++|
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~f   96 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF--------DGEY   96 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC--------CCCE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc--------cccc
Confidence            36789999999999999999986   57899999               345 579999999876522        5789


Q ss_pred             eEEEEcCCCc
Q 042171           68 DYAFMDADKD   77 (125)
Q Consensus        68 D~v~id~~~~   77 (125)
                      |+|++.....
T Consensus        97 D~I~~~~~~~  106 (198)
T d2i6ga1          97 DFILSTVVMM  106 (198)
T ss_dssp             EEEEEESCGG
T ss_pred             cEEEEeeeee
Confidence            9999866543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.89  E-value=3.4e-09  Score=73.50  Aligned_cols=63  Identities=14%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +..+|||+|||+|..++.+++..   .+|+++|               .++. .+++++.+|..+.++        +++|
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--------~~~f  120 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKY  120 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCE
T ss_pred             CCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--------cCCc
Confidence            56799999999999999999864   4799999               3454 369999999976532        4789


Q ss_pred             eEEEEcCCCc
Q 042171           68 DYAFMDADKD   77 (125)
Q Consensus        68 D~v~id~~~~   77 (125)
                      |+|+++....
T Consensus       121 D~Ii~~~p~~  130 (194)
T d1dusa_         121 NKIITNPPIR  130 (194)
T ss_dssp             EEEEECCCST
T ss_pred             eEEEEcccEE
Confidence            9999976543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.88  E-value=1.3e-09  Score=77.34  Aligned_cols=59  Identities=19%  Similarity=0.357  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ++++|||||||+|..++.|++.   +.+|++||             .....+++++++|+.+. + +      .++||+|
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~-~------~~~fD~I  109 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-A-F------KNEFDAV  109 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-C-C------CSCEEEE
T ss_pred             CCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccccchheehhhhhc-c-c------ccccchH
Confidence            4678999999999999999985   57899999             11223799999999876 2 2      4689999


Q ss_pred             EEc
Q 042171           71 FMD   73 (125)
Q Consensus        71 ~id   73 (125)
                      ++-
T Consensus       110 ~~~  112 (251)
T d1wzna1         110 TMF  112 (251)
T ss_dssp             EEC
T ss_pred             hhh
Confidence            973

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.9e-10  Score=79.75  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHH-HHhhcCCCCCcee
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLD-QLLKDSENEVNFD   68 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~-~~~~~~~~~~~fD   68 (125)
                      ..++||||||+|+.++.+++..+ +.+++++|               .++.+++.+++.+..+.+. .+...  .+++||
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~--~~~~fD  138 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEIIYD  138 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSCCBS
T ss_pred             cceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhc--ccCcee
Confidence            45899999999999999999998 79999999               6788999999877654321 11111  246799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++      +|+|+.
T Consensus       139 ~ivs------NPPY~~  148 (250)
T d2h00a1         139 FCMC------NPPFFA  148 (250)
T ss_dssp             EEEE------CCCCC-
T ss_pred             EEEe------cCcccc
Confidence            9996      777775

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=6.6e-09  Score=77.75  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.++|||+|||+|..++.+|+. + ..+|+++|               .++.++++++++|+.+.+..+...   ..+||
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~~fD  219 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKFD  219 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cCCCC
Confidence            4679999999999999999876 2 35899999               678789999999999987766432   57899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++|...
T Consensus       220 ~Vi~DpP~  227 (324)
T d2as0a2         220 IVVLDPPA  227 (324)
T ss_dssp             EEEECCCC
T ss_pred             chhcCCcc
Confidence            99998653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.82  E-value=1.3e-09  Score=77.72  Aligned_cols=60  Identities=13%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      .++++|||||||+|..+..|++.   +.+|+++|             .....+++++++|+.+. + +      .++||+
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD~  104 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-N-I------NRKFDL  104 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-C-C------SCCEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCccceeeccchhhh-c-c------cccccc
Confidence            35689999999999999999986   56899999             11234799999999865 2 2      468999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |++-
T Consensus       105 i~~~  108 (246)
T d1y8ca_         105 ITCC  108 (246)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            9973

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.2e-09  Score=79.47  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      .++.+|||||||+|..+..+++..+ +.+++++|         .....+++++++|+.+. | +     ++++||+|++-
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l-~-~-----~~~sfD~v~~~  154 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-P-F-----SDTSMDAIIRI  154 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-S-B-----CTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhc-c-C-----CCCCEEEEeec
Confidence            4678999999999999999999987 79999999         11235799999999865 4 2     26889999987


Q ss_pred             CCCcCCHHHHh
Q 042171           74 ADKDNYCNYMR   84 (125)
Q Consensus        74 ~~~~~~~~~~~   84 (125)
                      .....+.+..+
T Consensus       155 ~~~~~~~e~~r  165 (268)
T d1p91a_         155 YAPCKAEELAR  165 (268)
T ss_dssp             SCCCCHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            66655555444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.82  E-value=1e-09  Score=74.55  Aligned_cols=64  Identities=3%  Similarity=-0.145  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQL   57 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~   57 (125)
                      ++.+|||+|||+|..+++||+.   +.+|+++|            ++-              ...++++.+|..+..+..
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            4569999999999999999986   78999999            110              245688999988764432


Q ss_pred             hhcCCCCCceeEEEEcCCC
Q 042171           58 LKDSENEVNFDYAFMDADK   76 (125)
Q Consensus        58 ~~~~~~~~~fD~v~id~~~   76 (125)
                            ..+||+|+.....
T Consensus        97 ------~~~~D~i~~~~~l  109 (201)
T d1pjza_          97 ------IGHCAAFYDRAAM  109 (201)
T ss_dssp             ------HHSEEEEEEESCG
T ss_pred             ------ccceeEEEEEeee
Confidence                  4689999986553

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=1.8e-09  Score=75.02  Aligned_cols=63  Identities=19%  Similarity=0.301  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+|||||||+|..+..+++.   +.+|+++|             .....++.++.+|+.+. + +     ++++||+|
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~-~-----~~~~fD~I  106 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-S-F-----EDKTFDYV  106 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-C-S-----CTTCEEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccccccccccccccc-c-c-----cCcCceEE
Confidence            4469999999999999999985   57899999             12335678899999875 3 2     25889999


Q ss_pred             EEcCCC
Q 042171           71 FMDADK   76 (125)
Q Consensus        71 ~id~~~   76 (125)
                      ++-...
T Consensus       107 ~~~~~l  112 (226)
T d1ve3a1         107 IFIDSI  112 (226)
T ss_dssp             EEESCG
T ss_pred             EEecch
Confidence            985443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.78  E-value=5.4e-09  Score=73.73  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ..|||||||+|.+++.+|+..| +..++++|               .++ +++.++.+|+.+....+     +..++|.|
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~-----~~~~~~~i  105 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEIDRL  105 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCSEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhc-----cCCceehh
Confidence            4699999999999999999998 79999999               455 68999999998765444     25789999


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      ++-.
T Consensus       106 ~i~f  109 (204)
T d1yzha1         106 YLNF  109 (204)
T ss_dssp             EEES
T ss_pred             cccc
Confidence            8843

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.77  E-value=1.1e-08  Score=76.48  Aligned_cols=66  Identities=18%  Similarity=0.360  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ++++|||++||+|..++.++++   +++|++||               .++.+ +++++++|+.+.+......   ..+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~---~~~f  205 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GSTY  205 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TCCB
T ss_pred             CCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc---CCCC
Confidence            5779999999999999998875   57999999               45654 6999999999998766432   4789


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|-.
T Consensus       206 D~IilDPP  213 (309)
T d2igta1         206 DIILTDPP  213 (309)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999843

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=6.9e-09  Score=75.49  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+.++|||+|||+|..++.+++.   +.+|+++|               .++  +++++++|..+.++        .++|
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~--------~~~f  185 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALP--------FGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGG--------GCCE
T ss_pred             CccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEecccccccc--------cccc
Confidence            45679999999999999988874   57899999               344  46788999876543        4789


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|+++..
T Consensus       186 D~V~ani~  193 (254)
T d2nxca1         186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             chhhhccc
Confidence            99998543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.76  E-value=1.6e-08  Score=69.96  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||++||+|..++.++.+-  ..+|++||               .+..++++++.+|+.+.++.+...   ..+||
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~---~~~fD  115 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KLQFD  115 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc---CCCcc
Confidence            56799999999999999877752  24799999               356678999999999988776432   46899


Q ss_pred             EEEEcCC--CcCCHHHHh
Q 042171           69 YAFMDAD--KDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~--~~~~~~~~~   84 (125)
                      +||+|-.  ...+...++
T Consensus       116 lIflDPPY~~~~~~~~l~  133 (182)
T d2fhpa1         116 LVLLDPPYAKQEIVSQLE  133 (182)
T ss_dssp             EEEECCCGGGCCHHHHHH
T ss_pred             eEEechhhhhhHHHHHHH
Confidence            9999864  333444444

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.73  E-value=1.8e-08  Score=72.09  Aligned_cols=68  Identities=18%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||+|||+|+++..+|+..| +++|+++|            +.-..++..+.+++....+.. .   ....+|+++.
T Consensus        75 G~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~-~---~~~~v~~i~~  149 (230)
T d1g8sa_          75 DSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA-N---IVEKVDVIYE  149 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT-T---TCCCEEEEEE
T ss_pred             CCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccc-c---ccceeEEeec
Confidence            46899999999999999999877 79999999            333467888898887654321 1   1234556666


Q ss_pred             cCCCc
Q 042171           73 DADKD   77 (125)
Q Consensus        73 d~~~~   77 (125)
                      +....
T Consensus       150 ~~~~~  154 (230)
T d1g8sa_         150 DVAQP  154 (230)
T ss_dssp             CCCST
T ss_pred             cccch
Confidence            55443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.72  E-value=8.9e-09  Score=72.71  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|+.+..+++.+| +++|+++|            +.-..++.++.+|+... +....   ....+|+||
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~-~~~~~---~~~~vd~v~  130 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP-WKYSG---IVEKVDLIY  130 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCG-GGTTT---TCCCEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCc-ccccc---ccceEEEEE
Confidence            346999999999999999999997 68999999            22236899999998764 21111   135688999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      .|..+...
T Consensus       131 ~~~~~~~~  138 (209)
T d1nt2a_         131 QDIAQKNQ  138 (209)
T ss_dssp             ECCCSTTH
T ss_pred             ecccChhh
Confidence            88665443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=1.4e-08  Score=72.72  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      ..+|||+|||+|+.+..+|+.++++|+|+++|            +.-..++..+.+|+..... +..   ....+|+||.
T Consensus        74 G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~-~~~---~~~~vD~i~~  149 (227)
T d1g8aa_          74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE-YRA---LVPKVDVIFE  149 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG-GTT---TCCCEEEEEE
T ss_pred             CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc-ccc---cccceEEEEE
Confidence            45999999999999999999998789999999            2223567778888754311 111   1468999999


Q ss_pred             cCCCcCCH
Q 042171           73 DADKDNYC   80 (125)
Q Consensus        73 d~~~~~~~   80 (125)
                      |.......
T Consensus       150 d~~~~~~~  157 (227)
T d1g8aa_         150 DVAQPTQA  157 (227)
T ss_dssp             CCCSTTHH
T ss_pred             EccccchH
Confidence            97765443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=2.1e-08  Score=74.86  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +.++|||+|||+|..++.+|+.   ..+|+++|               .++ ++++++++|+.+.+..+...   .++||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~---~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKE---GERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhh---hcCCC
Confidence            4679999999999999998864   57899999               567 57999999999987766432   57899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +|++|..
T Consensus       218 ~Vi~DpP  224 (318)
T d1wxxa2         218 LVVLDPP  224 (318)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999964

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.3e-08  Score=75.26  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.++|||||||+|..++.+|++-  ..+|+++|              .+..++|+++++++.+. + +     +..+||+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-~-~-----~~~~~D~  105 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-H-L-----PVEKVDV  105 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SCSCEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-c-C-----ccccceE
Confidence            56799999999999999999862  35899999              56778999999999875 2 1     2578999


Q ss_pred             EEEc
Q 042171           70 AFMD   73 (125)
Q Consensus        70 v~id   73 (125)
                      |++.
T Consensus       106 Ivse  109 (311)
T d2fyta1         106 IISE  109 (311)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.69  E-value=1.7e-08  Score=72.93  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.++|||||||+|..+..++++.| +.+++++|              .++.++++++.+|..+.+         ...||+
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~~D~  150 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTADV  150 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccc---------cccchh
Confidence            457999999999999999999998 79999999              577889999999986532         245999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++-.-.+++
T Consensus       151 v~~~~vLh~~  160 (256)
T d1qzza2         151 VLLSFVLLNW  160 (256)
T ss_dssp             EEEESCGGGS
T ss_pred             hhcccccccc
Confidence            9986554444

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.1e-09  Score=72.92  Aligned_cols=67  Identities=9%  Similarity=0.041  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC--CCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR--VDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~--~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +..+|||||||+|..+..+++..+  .+|++||            ..  -..+++++++|+.+. + +     ..++||+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-~-~-----~~~~fD~  130 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-T-P-----EPDSYDV  130 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-C-C-----CSSCEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccc-c-c-----ccccccc
Confidence            457899999999999998876543  5899999            11  124689999999875 2 1     2578999


Q ss_pred             EEEcCCCcCC
Q 042171           70 AFMDADKDNY   79 (125)
Q Consensus        70 v~id~~~~~~   79 (125)
                      |++.....+.
T Consensus       131 I~~~~~l~h~  140 (222)
T d2ex4a1         131 IWIQWVIGHL  140 (222)
T ss_dssp             EEEESCGGGS
T ss_pred             cccccccccc
Confidence            9997765544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.6e-08  Score=75.00  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.++|||||||+|..++++|++ + ..+|+++|              .++.++|+++++++.+. + +     +.++||+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-~-~-----~~~~~D~  103 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-E-L-----PVEKVDI  103 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C-----SSSCEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-c-c-----ccceeEE
Confidence            5678999999999999999985 2 35899999              57788999999999875 2 2     2478999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++..
T Consensus       104 ivs~~  108 (316)
T d1oria_         104 IISEW  108 (316)
T ss_dssp             EEECC
T ss_pred             Eeeee
Confidence            99863

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=2.2e-08  Score=68.48  Aligned_cols=63  Identities=11%  Similarity=0.053  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|..++.++..   +++++++|               .++.+++..  .++...++....   ...+||
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~--~~~d~~~~~~~~---~~~~fD  112 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVA--LPVEVFLPEAKA---QGERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEEC--SCHHHHHHHHHH---TTCCEE
T ss_pred             CCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceee--eehhcccccccc---cCCccc
Confidence            5679999999999999987765   67899999               456555555  444443333221   257899


Q ss_pred             EEEEcC
Q 042171           69 YAFMDA   74 (125)
Q Consensus        69 ~v~id~   74 (125)
                      +||+|-
T Consensus       113 ~If~DP  118 (171)
T d1ws6a1         113 VAFMAP  118 (171)
T ss_dssp             EEEECC
T ss_pred             eeEEcc
Confidence            999984

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.67  E-value=1.1e-08  Score=73.36  Aligned_cols=68  Identities=13%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      .+..+|||||||+|..+..+++.-  .++|++||               .+...++.++++|+......      ...+|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~f   94 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKEF   94 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSCE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------ccccc
Confidence            356799999999999998888862  36899999               24445899999998644211      15689


Q ss_pred             eEEEEcCCCcC
Q 042171           68 DYAFMDADKDN   78 (125)
Q Consensus        68 D~v~id~~~~~   78 (125)
                      |+|++-..-+.
T Consensus        95 D~V~~~~~l~~  105 (252)
T d1ri5a_          95 DVISSQFSFHY  105 (252)
T ss_dssp             EEEEEESCGGG
T ss_pred             eEEEEcceeee
Confidence            99998665443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=4.3e-08  Score=68.81  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ...+|||||||+|..+..|++..+ ++.+|+++|               .+...++.+..+|..+. +        ...+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~--------~~~~  109 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IKNA  109 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C--------CCSE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c--------cccc
Confidence            456999999999999999999764 478999999               34556788888888654 2        3678


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+|++....
T Consensus       110 d~i~~~~~l  118 (225)
T d1im8a_         110 SMVILNFTL  118 (225)
T ss_dssp             EEEEEESCG
T ss_pred             eeeEEeeec
Confidence            999886543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=4.7e-09  Score=73.75  Aligned_cols=58  Identities=14%  Similarity=0.136  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ++.+|||||||+|..+.++++.   +.+|+++|          ....  ..++.+++.+. | +     ++++||+|++-
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~--~~~~~~~~~~l-~-~-----~~~~fD~ii~~  109 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV--KNVVEAKAEDL-P-F-----PSGAFEAVLAL  109 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC--SCEEECCTTSC-C-S-----CTTCEEEEEEC
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccc--ccccccccccc-c-c-----ccccccceeee
Confidence            5679999999999999999875   57999999          1111  23567888764 3 2     25889999963

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.3e-08  Score=70.66  Aligned_cols=65  Identities=8%  Similarity=-0.037  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-------------------CCCcEEEEecchHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-------------------VDHKINFIESEALS   52 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-------------------~~~~i~~~~gd~~~   52 (125)
                      +..+|||+|||+|..+.+||+.   +.+|++||            .+                   ...+++++++|..+
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            4569999999999999999985   68999999            11                   12579999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEcCCCc
Q 042171           53 VLDQLLKDSENEVNFDYAFMDADKD   77 (125)
Q Consensus        53 ~l~~~~~~~~~~~~fD~v~id~~~~   77 (125)
                      ..+.      ...+||+|+.-+...
T Consensus       122 l~~~------~~~~fd~i~~~~~l~  140 (229)
T d2bzga1         122 LPRT------NIGKFDMIWDRGALV  140 (229)
T ss_dssp             GGGS------CCCCEEEEEESSSTT
T ss_pred             cccc------ccCceeEEEEEEEEE
Confidence            6443      257899999765543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=4.6e-08  Score=68.49  Aligned_cols=60  Identities=13%  Similarity=0.196  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +.++|||+|||+|..++.++.. + ..+|+++|             .....+++++.+|+.+.          ..+||+|
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~----------~~~fD~V  113 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF----------NSRVDIV  113 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC----------CCCCSEE
T ss_pred             CCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh----------CCcCcEE
Confidence            4579999999999999987764 3 36899999             23345788999998643          4789999


Q ss_pred             EEcCC
Q 042171           71 FMDAD   75 (125)
Q Consensus        71 ~id~~   75 (125)
                      ++|..
T Consensus       114 i~nPP  118 (201)
T d1wy7a1         114 IMNPP  118 (201)
T ss_dssp             EECCC
T ss_pred             EEcCc
Confidence            99754

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=4.3e-08  Score=71.94  Aligned_cols=69  Identities=9%  Similarity=0.059  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||+|..++++++..+  .+|++||               .++..++.+...|..+.          .++||
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~~fD  119 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVD  119 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----------ccchh
Confidence            356999999999999999998764  7999999               57778899988887543          47899


Q ss_pred             EEEEcCCC-----cCCHHHHh
Q 042171           69 YAFMDADK-----DNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~-----~~~~~~~~   84 (125)
                      .|++-..-     ++++.+|+
T Consensus       120 ~i~si~~~eh~~~~~~~~~f~  140 (280)
T d2fk8a1         120 RIVSIEAFEHFGHENYDDFFK  140 (280)
T ss_dssp             EEEEESCGGGTCGGGHHHHHH
T ss_pred             hhhHhhHHHHhhhhhHHHHHH
Confidence            99975432     34466676

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=4.3e-08  Score=72.42  Aligned_cols=58  Identities=7%  Similarity=-0.054  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||||||.|..++++|+..+  .+|++|+               .++..++++...|....          +++||
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----------~~~fD  128 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPVD  128 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CCCCS
T ss_pred             CCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----------ccccc
Confidence            456999999999999999998874  7999999               67888999999887421          57899


Q ss_pred             EEEEc
Q 042171           69 YAFMD   73 (125)
Q Consensus        69 ~v~id   73 (125)
                      .|++-
T Consensus       129 ~i~si  133 (291)
T d1kpia_         129 RIVSL  133 (291)
T ss_dssp             EEEEE
T ss_pred             eEeec
Confidence            99974

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=1.6e-08  Score=73.63  Aligned_cols=63  Identities=13%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+|||+|+.++.+|+. + .++|+++|               .++.++|+++++|+.+..+        .+.||
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~~~D  176 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIAD  176 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEE
T ss_pred             CccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CCCCC
Confidence            4679999999999999999986 3 47999999               6788899999999987632        47899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      .|+++-..
T Consensus       177 ~Ii~~~p~  184 (260)
T d2frna1         177 RILMGYVV  184 (260)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCCC
Confidence            99997443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.62  E-value=1.2e-07  Score=70.76  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      +.++|||++||+|..++++++. + ..+|+++|               .++. .+++++.+|+.+.++.+...   ..+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~-g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---~~~f  218 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLTY  218 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCceeecCCCCcHHHHHHHhC-C-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---cCCC
Confidence            5679999999999999988774 2 35799999               4564 58999999999998876543   4689


Q ss_pred             eEEEEcCC
Q 042171           68 DYAFMDAD   75 (125)
Q Consensus        68 D~v~id~~   75 (125)
                      |+|++|-.
T Consensus       219 D~Ii~DPP  226 (317)
T d2b78a2         219 DIIIIDPP  226 (317)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEcCh
Confidence            99999954

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=5.8e-08  Score=71.51  Aligned_cols=69  Identities=7%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||||||.|..++++|+..  +++|++|.               .++.+++++..+|..+.          .++||
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------~~~fD  129 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DEPVD  129 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCS
T ss_pred             CCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------ccccc
Confidence            45699999999999999999986  48999999               67889999999998644          47899


Q ss_pred             EEEEcCC-----CcCCHHHHh
Q 042171           69 YAFMDAD-----KDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~-----~~~~~~~~~   84 (125)
                      .|++=..     ++++..+|+
T Consensus       130 ~i~si~~~eh~~~~~~~~~~~  150 (285)
T d1kpga_         130 RIVSIGAFEHFGHERYDAFFS  150 (285)
T ss_dssp             EEEEESCGGGTCTTTHHHHHH
T ss_pred             ceeeehhhhhcCchhHHHHHH
Confidence            9887322     345567777

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=4.4e-08  Score=72.91  Aligned_cols=62  Identities=19%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY   69 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~   69 (125)
                      +.++|||||||+|..++.+|++-  ..+|+++|              .++.+++++++++..+. + +     +.++||+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~-~-----~~~~~D~  108 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-H-L-----PFPKVDI  108 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SSSCEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhc-c-C-----cccceeE
Confidence            56799999999999999988862  35899999              56778999999999876 2 2     2578999


Q ss_pred             EEEcC
Q 042171           70 AFMDA   74 (125)
Q Consensus        70 v~id~   74 (125)
                      |++..
T Consensus       109 i~se~  113 (328)
T d1g6q1_         109 IISEW  113 (328)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            99853

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.58  E-value=4.6e-08  Score=68.67  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      ..++|||+|||+|..++.+++. + ..+|+++|          ... .++.++.+|..+.          .++||.|++|
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~-~~~~~~~~D~~~l----------~~~fD~Vi~N  114 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNC-GGVNFMVADVSEI----------SGKYDTWIMN  114 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHC-TTSEEEECCGGGC----------CCCEEEEEEC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHcc-ccccEEEEehhhc----------CCcceEEEeC
Confidence            4679999999999999887774 2 36899999          223 5789999998643          4789999986

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=5e-08  Score=71.54  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+++|+|||+|..++.+++. | +.+|+++|               .++..++.++.++..+.++..      .++||
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~------~~~fD  181 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK------FASIE  181 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG------TTTCC
T ss_pred             cccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc------cCccc
Confidence            3568999999999999999864 5 79999999               577789999999998875542      47899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++      +|+|+.
T Consensus       182 lIVs------NPPYI~  191 (271)
T d1nv8a_         182 MILS------NPPYVK  191 (271)
T ss_dssp             EEEE------CCCCBC
T ss_pred             EEEE------cccccC
Confidence            9996      777776

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.54  E-value=4.9e-08  Score=70.41  Aligned_cols=67  Identities=9%  Similarity=-0.008  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+|||+|||+|..|..|+....  .+|+++|            ..-..+++++++++.+.-  +     +.++||+|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~--~-----~~~~fD~I~  163 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT--L-----PPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC--C-----CSSCEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccc--c-----CCCccceEE
Confidence            567999999999999998886543  5899999            222356899999998752  1     257899999


Q ss_pred             EcCCCcCC
Q 042171           72 MDADKDNY   79 (125)
Q Consensus        72 id~~~~~~   79 (125)
                      +-..-.+.
T Consensus       164 ~~~vl~hl  171 (254)
T d1xtpa_         164 IQWTAIYL  171 (254)
T ss_dssp             EESCGGGS
T ss_pred             eecccccc
Confidence            97665444

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1.9e-07  Score=64.31  Aligned_cols=63  Identities=16%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||++||+|..++..+.+-  ..+|+.||               .+. .+++++.+|+.+.+...      ..+||
T Consensus        43 ~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~------~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPHN  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCEE
T ss_pred             chhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhccc-cceeeeeeccccccccc------ccccC
Confidence            35689999999999999877642  35899999               334 57899999999876432      57899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      +||+|-.
T Consensus       114 lIf~DPP  120 (183)
T d2fpoa1         114 IVFVDPP  120 (183)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCc
Confidence            9999854

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=4.5e-07  Score=67.46  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC--CCCcEEEEecchHHHHHHHhhcCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR--VDHKINFIESEALSVLDQLLKDSEN   63 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~--~~~~i~~~~gd~~~~l~~~~~~~~~   63 (125)
                      .+|++||.||.|.|..+.++++..+ ..+|+++|                 .+  -.+|++++.+|+.+.+...      
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------  148 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------  148 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc------
Confidence            4689999999999999999887654 68999999                 11  2468999999999998753      


Q ss_pred             CCceeEEEEcCC
Q 042171           64 EVNFDYAFMDAD   75 (125)
Q Consensus        64 ~~~fD~v~id~~   75 (125)
                      ..+||+|++|..
T Consensus       149 ~~~yDvIi~D~~  160 (312)
T d1uira_         149 EERYDVVIIDLT  160 (312)
T ss_dssp             CCCEEEEEEECC
T ss_pred             CCcccEEEEeCC
Confidence            568999999974

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1.6e-06  Score=60.29  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      ....+||++||+|.-|..+++++| +++|+++|             ..+.+++.+++++..+.- .+..+. ..++||.|
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~-~~~~~~-~~~~vdgI   99 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD-FLLKTL-GIEKVDGI   99 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH-HHHHHT-TCSCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH-HHHHHc-CCCCccee
Confidence            346899999999999999999997 79999999             335678999999876642 222211 25789999


Q ss_pred             EEcCCCcC
Q 042171           71 FMDADKDN   78 (125)
Q Consensus        71 ~id~~~~~   78 (125)
                      +.|.....
T Consensus       100 l~DlGvSs  107 (192)
T d1m6ya2         100 LMDLGVST  107 (192)
T ss_dssp             EEECSCCH
T ss_pred             eeccchhH
Confidence            99987644

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.7e-06  Score=59.43  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEecchHHHHH--HHhhcCCCCCceeEEEEcCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIESEALSVLD--QLLKDSENEVNFDYAFMDADKD   77 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~gd~~~~l~--~~~~~~~~~~~fD~v~id~~~~   77 (125)
                      +..+|||+||++|.|+-.+++..++.++++++|    ..+ +.+.++++|..+...  ..... ....++|+|++|++..
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~DlVlSD~ap~   99 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-VGVDFLQGDFRDELVMKALLER-VGDSKVQVVMSDMAPN   99 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-TTEEEEESCTTSHHHHHHHHHH-HTTCCEEEEEECCCCC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccccccc-CCceEeecccccchhhhhhhhh-ccCcceeEEEecccch
Confidence            456899999999999999999888789999999    333 678899999865311  11110 1246899999998864

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=8.7e-08  Score=66.12  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKD   77 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~   77 (125)
                      ..+|||||||+|..+..++       ++++||       ..-..+++++++|+.+. |.      ++++||+|++-..-.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l-~~------~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRGVFVLKGTAENL-PL------KDESFDFALMVTTIC  102 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHTTCEEEECBTTBC-CS------CTTCEEEEEEESCGG
T ss_pred             CCeEEEECCCCcccccccc-------eEEEEeCChhhccccccccccccccccccc-cc------ccccccccccccccc
Confidence            3489999999999887763       358999       11113689999999865 32      258899999865543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.20  E-value=5e-06  Score=60.57  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C------------CCCCcEEEEecchHHHHHHHh
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A------------RVDHKINFIESEALSVLDQLL   58 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~------------~~~~~i~~~~gd~~~~l~~~~   58 (125)
                      .+|++||.||.|.|..+..+++. + ..+|+.+|            .            .-.+|++++.+|+.+.+..  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred             CCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--
Confidence            47899999999999999887763 4 46899999            1            1247899999999988754  


Q ss_pred             hcCCCCCceeEEEEcCCCc
Q 042171           59 KDSENEVNFDYAFMDADKD   77 (125)
Q Consensus        59 ~~~~~~~~fD~v~id~~~~   77 (125)
                           .++||+|++|....
T Consensus       147 -----~~~yDvIi~D~~~~  160 (276)
T d1mjfa_         147 -----NRGFDVIIADSTDP  160 (276)
T ss_dssp             -----CCCEEEEEEECCCC
T ss_pred             -----cCCCCEEEEeCCCC
Confidence                 47799999997654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=7.2e-07  Score=64.80  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC---CcEEEEecchHHHHHHHhhcCCCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD---HKINFIESEALSVLDQLLKDSENEV   65 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~---~~i~~~~gd~~~~l~~~~~~~~~~~   65 (125)
                      +.++|||+|||+|..++.||+.   +.+|+++|               .+..   .+..+...+....-..+.    ...
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  128 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP----AGD  128 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC----CTT
T ss_pred             CCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC----CCC
Confidence            3569999999999999999986   57999999               1111   234555666654322221    146


Q ss_pred             ceeEEEEcC
Q 042171           66 NFDYAFMDA   74 (125)
Q Consensus        66 ~fD~v~id~   74 (125)
                      +||.|++-.
T Consensus       129 ~fd~v~~~~  137 (292)
T d1xvaa_         129 GFDAVICLG  137 (292)
T ss_dssp             CEEEEEECS
T ss_pred             CceEEEEec
Confidence            899999743

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.19  E-value=2.3e-06  Score=61.33  Aligned_cols=65  Identities=15%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +.++|||||+|+|..++.++++.| +.+++..|       ++..+||+++.||..+.          ...+|++++-.--
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~----------~p~aD~~~l~~vL  148 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS----------IPNADAVLLKYIL  148 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCBTTEEEEECCTTTC----------CCCCSEEEEESCG
T ss_pred             CceEEEEecCCccHHHHHHHHhCC-CCeEEEecCHHHHHhCcccCceEEEecCcccC----------CCCCcEEEEEeec
Confidence            457899999999999999999999 78999999       66778999999998653          2357999986554


Q ss_pred             cCC
Q 042171           77 DNY   79 (125)
Q Consensus        77 ~~~   79 (125)
                      +++
T Consensus       149 Hdw  151 (244)
T d1fp2a2         149 HNW  151 (244)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.7e-06  Score=61.06  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=45.9

Q ss_pred             EEEEEcCcccHHHHHHHhhCC-----CCCEEEEEe-------------CCC--CC--cEEEEecchHHHHHHHhhcCCCC
Q 042171            7 KTIEIGVFTGYSLFLTALTIP-----EDGQITAID-------------ARV--DH--KINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~~-----~~~~v~~iD-------------~~~--~~--~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      +|||||||+|..+.+|++++.     ...+++++|             ...  ..  ++.+...++.+........ .+.
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  121 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK-KEL  121 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS-SSC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc-CCC
Confidence            799999999999999987642     134689999             111  12  3456777776653332111 135


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++-...
T Consensus       122 ~~fD~I~~~~~l  133 (280)
T d1jqea_         122 QKWDFIHMIQML  133 (280)
T ss_dssp             CCEEEEEEESCG
T ss_pred             CceeEEEEccce
Confidence            789999986554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.14  E-value=2.3e-06  Score=61.16  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..|++.   ..+|++||            ..-.++++++++|+.+.
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~   79 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF   79 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred             CCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhc
Confidence            5679999999999999999987   47899999            22236899999999875

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.13  E-value=4.5e-06  Score=59.77  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK   76 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~   76 (125)
                      +.++|||||||+|..++.++++.| +.+++..|       ++..+||+++.||..+.+          ...|++++-.-.
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~----------p~~D~~~l~~vL  149 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDLPQVIENAPPLSGIEHVGGDMFASV----------PQGDAMILKAVC  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHTTCCCCTTEEEEECCTTTCC----------CCEEEEEEESSG
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecchhhhhccCCCCCeEEecCCccccc----------ccceEEEEehhh
Confidence            457999999999999999999998 79999999       556689999999986542          346999986554


Q ss_pred             cCC
Q 042171           77 DNY   79 (125)
Q Consensus        77 ~~~   79 (125)
                      +.+
T Consensus       150 h~~  152 (244)
T d1fp1d2         150 HNW  152 (244)
T ss_dssp             GGS
T ss_pred             hhC
Confidence            444

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=3.6e-06  Score=62.06  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-CCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-VDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||-||.|.|..+..+++..+ ..+|+.+|                 .. -.+|++++.+|+.+.+...      .
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~  160 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------K  160 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------S
T ss_pred             CCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------C
Confidence            4789999999999999988887654 67899999                 11 2479999999999987643      5


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      +.||+|++|...
T Consensus       161 ~~yDvIi~D~~d  172 (295)
T d1inla_         161 NEFDVIIIDSTD  172 (295)
T ss_dssp             SCEEEEEEEC--
T ss_pred             CCCCEEEEcCCC
Confidence            789999999653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=5.8e-06  Score=60.24  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------CC--CCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------AR--VDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------~~--~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||-||-|.|..+.++++..+ ..+|+.+|                .+  -.+|++++.+|+...+...      .
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------~  146 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E  146 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc------C
Confidence            4689999999999999999987654 67999999                11  2468999999999987642      5


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       147 ~~yDvIi~D~~~  158 (274)
T d1iy9a_         147 NQYDVIMVDSTE  158 (274)
T ss_dssp             SCEEEEEESCSS
T ss_pred             CCCCEEEEcCCC
Confidence            789999999754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.01  E-value=1.2e-06  Score=63.10  Aligned_cols=47  Identities=21%  Similarity=0.312  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~   53 (125)
                      +..+|||||||+|..|..|++.   ..+|++||            .....+++++++|+++.
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF   87 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT
T ss_pred             CCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcc
Confidence            4568999999999999999987   46899999            12236899999999875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=9.9e-06  Score=59.33  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C------CCCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A------RVDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~------~~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      ..|++||-||.|.|..+..+.+..+ ..+|+.+|            .      --.+|++++.+|+.+.+...      .
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------~  149 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------Q  149 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------S
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC------C
Confidence            4689999999999999999887554 67999998            1      12479999999999987642      5


Q ss_pred             CceeEEEEcCCC
Q 042171           65 VNFDYAFMDADK   76 (125)
Q Consensus        65 ~~fD~v~id~~~   76 (125)
                      ++||+|++|...
T Consensus       150 ~~yDvIi~D~~~  161 (285)
T d2o07a1         150 DAFDVIITDSSD  161 (285)
T ss_dssp             SCEEEEEEECC-
T ss_pred             CCCCEEEEcCCC
Confidence            789999999764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7.2e-06  Score=60.85  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------------CCC-CCcEEEEecchHHHHHHHhhc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------------ARV-DHKINFIESEALSVLDQLLKD   60 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------------~~~-~~~i~~~~gd~~~~l~~~~~~   60 (125)
                      +...|||||||+|..++.+|+..+ ..++++||                      .+. ..++++++||+.+. +.- .+
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~-~~~-~~  227 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-EWR-ER  227 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH-HHH-HH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc-ccc-cc
Confidence            346899999999999999999887 57899999                      122 25799999999865 321 10


Q ss_pred             CCCCCceeEEEEcC
Q 042171           61 SENEVNFDYAFMDA   74 (125)
Q Consensus        61 ~~~~~~fD~v~id~   74 (125)
                         ....|+||+..
T Consensus       228 ---~~~advi~~~~  238 (328)
T d1nw3a_         228 ---IANTSVIFVNN  238 (328)
T ss_dssp             ---HHHCSEEEECC
T ss_pred             ---cCcceEEEEcc
Confidence               12358888743

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.00  E-value=1.4e-05  Score=58.55  Aligned_cols=69  Identities=22%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------------CCCCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------------ARVDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||-||-|.|..+..+++..+ ..+|+.+|                  ..-.+|++++.+|+.+.+...     .+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~~  152 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AE  152 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CT
T ss_pred             CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----cc
Confidence            4789999999999999999888654 57899999                  112579999999999987653     24


Q ss_pred             CceeEEEEcCCCc
Q 042171           65 VNFDYAFMDADKD   77 (125)
Q Consensus        65 ~~fD~v~id~~~~   77 (125)
                      ++||+|++|....
T Consensus       153 ~~yDvIi~D~~dp  165 (290)
T d1xj5a_         153 GSYDAVIVDSSDP  165 (290)
T ss_dssp             TCEEEEEECCCCT
T ss_pred             cCccEEEEcCCCC
Confidence            6899999998754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=5.2e-06  Score=58.29  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ++.+|+|||||.|.=++.+|-..| +.+++.+|               -++ ++++++.+.+.+..+        ..+||
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~--------~~~fD  134 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS--------EPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC--------CSCEE
T ss_pred             cCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhcc--------ccccc
Confidence            457899999999999999999888 79999999               455 589999999987522        46899


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|.+-|-. .....++
T Consensus       135 ~V~sRA~~-~~~~ll~  149 (207)
T d1jsxa_         135 GVISRAFA-SLNDMVS  149 (207)
T ss_dssp             EEECSCSS-SHHHHHH
T ss_pred             eehhhhhc-CHHHHHH
Confidence            99874442 3344444

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.97  E-value=1.1e-05  Score=59.84  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC------CCCcEEEEecchHHHHHHHhhcCCCC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR------VDHKINFIESEALSVLDQLLKDSENE   64 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~------~~~~i~~~~gd~~~~l~~~~~~~~~~   64 (125)
                      .+|++||-||.|.|..+..+++.-+ -.+|+.+|            .+      -.+|++++.+|+.+.+...      .
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~------~  177 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------K  177 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------T
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC------C
Confidence            4689999999999999999887544 57899999            11      1368999999999987652      5


Q ss_pred             CceeEEEEcCCCc
Q 042171           65 VNFDYAFMDADKD   77 (125)
Q Consensus        65 ~~fD~v~id~~~~   77 (125)
                      .+||+|++|....
T Consensus       178 ~~yDvII~D~~dp  190 (312)
T d2b2ca1         178 NEFDVIITDSSDP  190 (312)
T ss_dssp             TCEEEEEECCC--
T ss_pred             CCCCEEEEcCCCC
Confidence            7899999997643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=4.1e-06  Score=62.29  Aligned_cols=74  Identities=9%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      +..+|||+-||+|..++.||+.   ..+|+++|               .++ ++++++.++..+.++....   ...+||
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~~~---~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPW---AKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGG---GTTCCS
T ss_pred             CCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhhhh---hhccCc
Confidence            4568999999999999999986   47899999               455 6899999999876544321   146799


Q ss_pred             EEEEcCCCcCCHHHHh
Q 042171           69 YAFMDADKDNYCNYMR   84 (125)
Q Consensus        69 ~v~id~~~~~~~~~~~   84 (125)
                      +|++|-.-.-....++
T Consensus       285 ~vilDPPR~G~~~~~~  300 (358)
T d1uwva2         285 KVLLDPARAGAAGVMQ  300 (358)
T ss_dssp             EEEECCCTTCCHHHHH
T ss_pred             eEEeCCCCccHHHHHH
Confidence            9999965443333333

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.3e-05  Score=54.79  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF   67 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f   67 (125)
                      ...+|||+.||||..++..+.+=  ..+|+.||               .++. ....++..|+.+.+....    ...+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~----~~~~f  116 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----NQPHF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC----SSCCE
T ss_pred             ccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc----cCCcc
Confidence            34689999999999999987652  35899999               3443 357888899887654321    24579


Q ss_pred             eEEEEcCCC
Q 042171           68 DYAFMDADK   76 (125)
Q Consensus        68 D~v~id~~~   76 (125)
                      |+||+|-.-
T Consensus       117 DlIFlDPPY  125 (183)
T d2ifta1         117 DVVFLDPPF  125 (183)
T ss_dssp             EEEEECCCS
T ss_pred             cEEEechhH
Confidence            999998663

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.86  E-value=9.7e-06  Score=57.68  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~   53 (125)
                      +.++|||||||+|..++.++++.| +.+++..|       +...++++++.+|..+.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~  136 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS  136 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTTTTTCCCCTTEEEEECCTTTC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHhhhhcccCCceEEeccccccc
Confidence            457899999999999999999998 89999999       45568999999998754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=58.18  Aligned_cols=67  Identities=21%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+++|+|.-|+.||..+.+.++|+++|               .|+ .++.+...|....-+...    ....||
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~----~~~~fD  168 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDP----RYHEVH  168 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCG----GGTTEE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhccccc----ccceee
Confidence            356899999999999999999888789999999               455 578999999876533211    136799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       169 ~VL~DaP  175 (293)
T d2b9ea1         169 YILLDPS  175 (293)
T ss_dssp             EEEECCC
T ss_pred             EEeecCc
Confidence            9999965

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=2.7e-05  Score=53.36  Aligned_cols=63  Identities=11%  Similarity=-0.026  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      +..+|||.|||+|..+..+.+..+...+++++|     ..+..+..++.++.....        ....||+|+.+-
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~--------~~~~fd~ii~np   86 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE--------PGEAFDLILGNP   86 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC--------CSSCEEEEEECC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc--------cccccceecccC
Confidence            457999999999999999888877678899999     344556788899887542        147899999863

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=8.8e-06  Score=58.63  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------C--CCCCcEEEEecchHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------A--RVDHKINFIESEALS   52 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~--~~~~~i~~~~gd~~~   52 (125)
                      +...|||||+|+|..|..|++.   ..+|++||          .  ...++++++.+|+.+
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             CCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            4568999999999999999986   46799999          1  223689999999986

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.77  E-value=4.8e-06  Score=60.11  Aligned_cols=60  Identities=13%  Similarity=0.321  Sum_probs=50.3

Q ss_pred             CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC------CCCcEEEEecchHHHHHHHhhcCC
Q 042171            6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR------VDHKINFIESEALSVLDQLLKDSE   62 (125)
Q Consensus         6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~------~~~~i~~~~gd~~~~l~~~~~~~~   62 (125)
                      .+|||.-+|.|.-+..+|..   +++|+++|                 ..      ...|++++.+|+.+++..+     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999986   68999999                 11      1248999999999987654     


Q ss_pred             CCCceeEEEEcC
Q 042171           63 NEVNFDYAFMDA   74 (125)
Q Consensus        63 ~~~~fD~v~id~   74 (125)
                       ..+||+|++|-
T Consensus       162 -~~~~DvIYlDP  172 (250)
T d2oyra1         162 -TPRPQVVYLDP  172 (250)
T ss_dssp             -SSCCSEEEECC
T ss_pred             -CCCCCEEEECC
Confidence             46799999985

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=9.3e-05  Score=52.78  Aligned_cols=67  Identities=13%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+++|||||.|.=++.+|-..| +.+++-+|               -++ ++++++.+.+++.-..-    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccc----cccccce
Confidence            357899999999999999999888 79999999               356 68999999998752211    0136899


Q ss_pred             EEEEcCCC
Q 042171           69 YAFMDADK   76 (125)
Q Consensus        69 ~v~id~~~   76 (125)
                      +|++-|-.
T Consensus       144 ~v~sRAva  151 (239)
T d1xdza_         144 IVTARAVA  151 (239)
T ss_dssp             EEEEECCS
T ss_pred             EEEEhhhh
Confidence            99986554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4.6e-05  Score=55.54  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~   53 (125)
                      +...|||||+|+|..|..|++.   ..+|++||               .....+++++.+|+...
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            3468999999999999999987   46899999               12346899999999865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=0.00015  Score=53.39  Aligned_cols=64  Identities=25%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|+|.|.=|+.|+..+..++.++++|               .++ .++.+...|.... +..      ...||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~-~~~------~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHI-GEL------NVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGG-GGG------CCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hcccccccccccc-ccc------ccccc
Confidence            346899999999999999999998789999999               445 5677888887655 322      57899


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       188 ~ILvDaP  194 (313)
T d1ixka_         188 KILLDAP  194 (313)
T ss_dssp             EEEEECC
T ss_pred             EEEEccc
Confidence            9999964

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00041  Score=50.21  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD   68 (125)
                      ...+|||+|++.|-=|+.|+.... +++|+++|               .++ ..+.....+.... ...     ....||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~-~~~~~~~~~~~~~-~~~-----~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPS-QWC-----GEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTH-HHH-----TTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccc-cceeeeccccccc-hhc-----cccccc
Confidence            456999999999999999998776 69999999               445 3344444444322 111     146799


Q ss_pred             EEEEcCC
Q 042171           69 YAFMDAD   75 (125)
Q Consensus        69 ~v~id~~   75 (125)
                      .|++|+.
T Consensus       174 ~IL~DaP  180 (284)
T d1sqga2         174 RILLDAP  180 (284)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999964

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=8.8e-05  Score=56.68  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=28.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ..++||||||+|..++.+|+..+ ..++++||
T Consensus       217 gd~fLDLGCG~G~~vl~aA~~~g-~~~v~GID  247 (406)
T d1u2za_         217 GDTFMDLGSGVGNCVVQAALECG-CALSFGCE  247 (406)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHC-CSEEEEEE
T ss_pred             CCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEe
Confidence            45899999999999999999987 57999999

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00088  Score=50.38  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC--------------CCcEEEEecchHHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV--------------DHKINFIESEALSVL   54 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~--------------~~~i~~~~gd~~~~l   54 (125)
                      ++.+|||..||||.-++..|+..+ ..+|++.|               .+.              ..++.+...|+...+
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            678999999999999998888776 56899999               111              235888999998776


Q ss_pred             HHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171           55 DQLLKDSENEVNFDYAFMDADKDNYCNYMR   84 (125)
Q Consensus        55 ~~~~~~~~~~~~fD~v~id~~~~~~~~~~~   84 (125)
                      ...      ...||+|.+|-- ..-.+|++
T Consensus       124 ~~~------~~~fDvIDiDPf-Gs~~pfld  146 (375)
T d2dula1         124 AER------HRYFHFIDLDPF-GSPMEFLD  146 (375)
T ss_dssp             HHS------TTCEEEEEECCS-SCCHHHHH
T ss_pred             Hhh------cCcCCcccCCCC-CCcHHHHH
Confidence            542      567999999963 34456666

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.04  E-value=0.00049  Score=49.38  Aligned_cols=65  Identities=8%  Similarity=0.032  Sum_probs=44.3

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCC-------------CCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARV-------------DHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~-------------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ..+|+|+|||.|.|+-.++...+ ...+.+++-|.             .+-+++..++....++        ..+.|.|+
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~--------~~~~D~vl  137 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--------PERCDTLL  137 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--------CCCCSEEE
T ss_pred             CCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccCCccccccccccccchhhhhHHhcC--------CCcCCEEE
Confidence            34899999999999999988654 45677777211             1235555554433322        47899999


Q ss_pred             EcCCCcC
Q 042171           72 MDADKDN   78 (125)
Q Consensus        72 id~~~~~   78 (125)
                      +|.....
T Consensus       138 cDm~ess  144 (257)
T d2p41a1         138 CDIGESS  144 (257)
T ss_dssp             ECCCCCC
T ss_pred             eeCCCCC
Confidence            9987643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0001  Score=51.42  Aligned_cols=31  Identities=26%  Similarity=0.106  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+|||||||+|..++.++...  ..+|+++|
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD   81 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSD   81 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEE
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEec
Confidence            45689999999998887776542  24799999

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.0078  Score=40.62  Aligned_cols=71  Identities=7%  Similarity=-0.028  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +...++|..+|.|.-+..+.+.   +++|+++|          .-..+++.+++++..+.-..+.. . ..+.+|.|+.|
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~-~-~~~~vdgIl~D   92 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA-L-GVERVDGILAD   92 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH-T-TCSCEEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHH-c-CCCccCEEEEE
Confidence            3458999999999888888774   68999999          12457899999987765332221 1 24789999999


Q ss_pred             CCCcCC
Q 042171           74 ADKDNY   79 (125)
Q Consensus        74 ~~~~~~   79 (125)
                      -....+
T Consensus        93 LGvSs~   98 (182)
T d1wg8a2          93 LGVSSF   98 (182)
T ss_dssp             CSCCHH
T ss_pred             ccCCHH
Confidence            876544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0015  Score=47.90  Aligned_cols=49  Identities=6%  Similarity=-0.002  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHH
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSV   53 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~   53 (125)
                      +...|||||.|.|..|..|..+.. .-+++++|           .--.++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence            355799999999999999998743 35899999           11136799999999854

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.45  E-value=0.0005  Score=50.05  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC----CCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP----EDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVN   66 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~----~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~   66 (125)
                      +..+|||.|||+|...+.+.+.+.    ...+++++|             .-......+..+|.....+        ..+
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~~  188 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL--------VDP  188 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC--------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccc--------ccc
Confidence            345899999999999999876543    235799999             0112456677777654422        478


Q ss_pred             eeEEEEcC
Q 042171           67 FDYAFMDA   74 (125)
Q Consensus        67 fD~v~id~   74 (125)
                      ||+|+.+-
T Consensus       189 fD~vi~NP  196 (328)
T d2f8la1         189 VDVVISDL  196 (328)
T ss_dssp             EEEEEEEC
T ss_pred             ccccccCC
Confidence            99999853

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00053  Score=48.61  Aligned_cols=31  Identities=26%  Similarity=0.173  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ++.+|||||||+|..++..+...  ..+|+++|
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D   84 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTD   84 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEEC
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEe
Confidence            56799999999997765444332  35899999

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.27  E-value=0.00092  Score=45.48  Aligned_cols=33  Identities=15%  Similarity=0.012  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCcccHHHHH----HHhhCC---CCCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFL----TALTIP---EDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~----la~~~~---~~~~v~~iD   36 (125)
                      ++-+|+.+||++|--+..    +.++..   ..-+|++.|
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atD   63 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASD   63 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEE
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeec
Confidence            456999999999975433    333322   134799999

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.42  E-value=0.054  Score=35.56  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+||-+|||. |.+++.+|+..+ -.+|+++|           .|...-+.....+..+.+..+.    +...+|+||
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t----~g~G~D~vi  101 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLT----NGKGVDRVI  101 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHT----TTSCEEEEE
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHh----hccCcceEE
Confidence            345888899987 899999999875 35799999           2332223233334444433331    235599988


Q ss_pred             EcCCCcC-CHHHHh
Q 042171           72 MDADKDN-YCNYMR   84 (125)
Q Consensus        72 id~~~~~-~~~~~~   84 (125)
                      --..... ..+.++
T Consensus       102 d~~g~~~~~~~a~~  115 (174)
T d1jqba2         102 MAGGGSETLSQAVK  115 (174)
T ss_dssp             ECSSCTTHHHHHHH
T ss_pred             EccCCHHHHHHHHH
Confidence            6544333 344455

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.00  E-value=0.093  Score=35.07  Aligned_cols=32  Identities=13%  Similarity=-0.003  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|||. |..++.+|++.+ ..+|+++|
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d   57 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGD   57 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhc-ccceeeec
Confidence            456899999998 888888998886 57999999

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.36  E-value=0.12  Score=34.30  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM   72 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i   72 (125)
                      +|.+|+-||+|. |..++..|+++  +++|+.+|          .-+..+++....+...+...+       ...|+|+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~-------~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-------AEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-------HTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhh-------ccCcEEEE
Confidence            689999999995 88999999999  49999999          112356777777776554444       45899987


Q ss_pred             cCC
Q 042171           73 DAD   75 (125)
Q Consensus        73 d~~   75 (125)
                      -+.
T Consensus       102 aal  104 (168)
T d1pjca1         102 AVL  104 (168)
T ss_dssp             CCC
T ss_pred             eee
Confidence            554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.05  E-value=0.23  Score=32.18  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+||-+|+|. |..++.+|++.+ -.+|+++|
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~   60 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIA   60 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEE
T ss_pred             CCCEEEEECCCccchhheecccccc-cccccccc
Confidence            347999999884 788889999875 24899999

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.90  E-value=0.039  Score=41.20  Aligned_cols=61  Identities=10%  Similarity=0.065  Sum_probs=44.2

Q ss_pred             CCEEEEEcCcccHHHHHHHhhCCCC------------CEEEEEe---------------CCCC-CcEEEEecchHHHHHH
Q 042171            5 LKKTIEIGVFTGYSLFLTALTIPED------------GQITAID---------------ARVD-HKINFIESEALSVLDQ   56 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~~~~------------~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~   56 (125)
                      ..+|+|-+||+|...+.+.+.+...            ..++++|               .+.. .+..+..+|..+..  
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~--  240 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--  240 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh--
Confidence            4689999999999999988876421            2489999               3332 34567778776431  


Q ss_pred             HhhcCCCCCceeEEEEc
Q 042171           57 LLKDSENEVNFDYAFMD   73 (125)
Q Consensus        57 ~~~~~~~~~~fD~v~id   73 (125)
                            ....||+|+.+
T Consensus       241 ------~~~~fD~Ii~N  251 (425)
T d2okca1         241 ------PSTLVDVILAN  251 (425)
T ss_dssp             ------CSSCEEEEEEC
T ss_pred             ------cccccceEEec
Confidence                  24789999974

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.14  Score=33.00  Aligned_cols=31  Identities=19%  Similarity=0.072  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+||-+|+| .|..++.+|++.  +.+|+++|
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~   58 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAM--GAETYVIS   58 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhc--cccccccc
Confidence            35689999998 788888899887  47999999

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.4  Score=30.75  Aligned_cols=65  Identities=12%  Similarity=0.051  Sum_probs=40.3

Q ss_pred             CCCEEEEEcC--cccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171            4 KLKKTIEIGV--FTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA   70 (125)
Q Consensus         4 ~~~~vLeiG~--g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v   70 (125)
                      +..+||-.|+  +.|..++.+|++.+  .++++++           .|...-+.....|..+.+....    ....+|+|
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t----~~~g~d~v  101 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV----GEKGIDII  101 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH----CTTCEEEE
T ss_pred             CCCEEEEEeccccccccccccccccC--cccccccccccccccccccCcccccccccccHHHHhhhhh----ccCCceEE
Confidence            3558999985  67888889999874  7888887           3443223222334444433332    24679988


Q ss_pred             EEcC
Q 042171           71 FMDA   74 (125)
Q Consensus        71 ~id~   74 (125)
                      +--.
T Consensus       102 ~d~~  105 (174)
T d1yb5a2         102 IEML  105 (174)
T ss_dssp             EESC
T ss_pred             eecc
Confidence            8533

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.90  E-value=0.37  Score=28.55  Aligned_cols=73  Identities=15%  Similarity=0.039  Sum_probs=44.8

Q ss_pred             CCCCCCEEEEEc-CcccHHHHHHHhhCCCCCEEEEEeCCC--------CCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            1 MRLKLKKTIEIG-VFTGYSLFLTALTIPEDGQITAIDARV--------DHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         1 ~~~~~~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD~~~--------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      ++.+.++|.=|| +|+|.++++....-. +.+|.+.|...        ...+++..+...+.+          ...|+|+
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i----------~~~d~vV   72 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHI----------EGASVVV   72 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGG----------TTCSEEE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhHHHHCCCeEEECCccccC----------CCCCEEE
Confidence            356778999998 788988864332221 67999999111        123556666554432          3478888


Q ss_pred             EcCC-CcCCHHHHh
Q 042171           72 MDAD-KDNYCNYMR   84 (125)
Q Consensus        72 id~~-~~~~~~~~~   84 (125)
                      ...+ +.+++++.+
T Consensus        73 ~S~AI~~~npel~~   86 (96)
T d1p3da1          73 VSSAIKDDNPELVT   86 (96)
T ss_dssp             ECTTSCTTCHHHHH
T ss_pred             ECCCcCCCCHHHHH
Confidence            7666 345665543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.01  E-value=0.39  Score=30.95  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=39.9

Q ss_pred             CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      +..+||-+|+|. |..++.++++.+ ..+|+++|           .|...-+.....+..+.+..+.     .+.||.||
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t-----~gg~D~vi  101 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEIT-----DGGVNFAL  101 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-----TSCEEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHc-----CCCCcEEE
Confidence            345899999863 556777888776 45778887           3332223223344445444442     35799998


Q ss_pred             EcCCC
Q 042171           72 MDADK   76 (125)
Q Consensus        72 id~~~   76 (125)
                      -....
T Consensus       102 d~~G~  106 (174)
T d1f8fa2         102 ESTGS  106 (174)
T ss_dssp             ECSCC
T ss_pred             EcCCc
Confidence            65443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.28  E-value=1.1  Score=31.83  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=46.1

Q ss_pred             EEEEEcCcccHHHHHHHhhC--CCCCEEEEEe------------------------------CCCCCcEEEEecchHHH-
Q 042171            7 KTIEIGVFTGYSLFLTALTI--PEDGQITAID------------------------------ARVDHKINFIESEALSV-   53 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~--~~~~~v~~iD------------------------------~~~~~~i~~~~gd~~~~-   53 (125)
                      +||-.| |+|+.+.++++.+  ..+-+|+++|                              .....++.++++|..+. 
T Consensus         4 KVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~   82 (383)
T d1gy8a_           4 RVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED   82 (383)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred             EEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence            688666 8999999998876  2367899998                              11234688999998753 


Q ss_pred             -HHHHhhcCCCCCceeEEEEcCCCc
Q 042171           54 -LDQLLKDSENEVNFDYAFMDADKD   77 (125)
Q Consensus        54 -l~~~~~~~~~~~~fD~v~id~~~~   77 (125)
                       +..+..+   ..++|.|+--++..
T Consensus        83 ~l~~~~~~---~~~~d~ViH~Aa~~  104 (383)
T d1gy8a_          83 FLNGVFTR---HGPIDAVVHMCAFL  104 (383)
T ss_dssp             HHHHHHHH---SCCCCEEEECCCCC
T ss_pred             Hhhhhhhc---cceeehhhcccccc
Confidence             2222211   36789999776643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=86.86  E-value=0.74  Score=26.54  Aligned_cols=64  Identities=16%  Similarity=0.073  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEeC--------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171            3 LKLKKTIEIGVF-TGYSLFLTALTIPEDGQITAIDA--------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         3 ~~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD~--------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id   73 (125)
                      .+.++|+-+|-| ||.+++.++...  +.+|+..|.        .+...+.++.+...+.  .+       ..+|+|++.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~d~vi~S   71 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDE--WL-------MAADLIVAS   71 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTGGGSCTTSCEEESBCCHH--HH-------HHCSEEEEC
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhHHHHhhccceeecccchh--hh-------ccCCEEEEC
Confidence            456789999863 444444433332  578999991        1233455555543222  12       358999986


Q ss_pred             CCCc
Q 042171           74 ADKD   77 (125)
Q Consensus        74 ~~~~   77 (125)
                      -..+
T Consensus        72 PGi~   75 (93)
T d2jfga1          72 PGIA   75 (93)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            5543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.63  Score=32.45  Aligned_cols=65  Identities=14%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             EEEEEcCcccHHHHHHHhhC-CCC-CEEEEEeC--------CCCCcEEEEecchHH---HHHHHhhcCCCCCceeEEEEc
Q 042171            7 KTIEIGVFTGYSLFLTALTI-PED-GQITAIDA--------RVDHKINFIESEALS---VLDQLLKDSENEVNFDYAFMD   73 (125)
Q Consensus         7 ~vLeiG~g~G~~t~~la~~~-~~~-~~v~~iD~--------~~~~~i~~~~gd~~~---~l~~~~~~~~~~~~fD~v~id   73 (125)
                      +||-.|. +|+.+..+++.+ ..+ -+|+++|.        .-.++++++.+|..+   .....      ...+|.|+--
T Consensus         2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~------~~~~d~Vih~   74 (342)
T d2blla1           2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPL   74 (342)
T ss_dssp             EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHH------HHHCSEEEEC
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHH------HhCCCccccc
Confidence            5888886 999999998876 323 47999991        113679999999753   22322      2458999976


Q ss_pred             CCCcC
Q 042171           74 ADKDN   78 (125)
Q Consensus        74 ~~~~~   78 (125)
                      ++...
T Consensus        75 a~~~~   79 (342)
T d2blla1          75 VAIAT   79 (342)
T ss_dssp             BCCCC
T ss_pred             ccccc
Confidence            66433

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.63  E-value=0.44  Score=35.32  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD   36 (125)
                      +...++|||+..|.++.++++..+. ..+|+++|
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFE  245 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE  245 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEEC
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEe
Confidence            3457899999999999999887653 36999999

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.91  E-value=1.5  Score=30.74  Aligned_cols=68  Identities=18%  Similarity=0.001  Sum_probs=44.5

Q ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe----CC---CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171            3 LKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID----AR---VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus         3 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD----~~---~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      .+..+||-.| |+|+.+.++++.+- .+-+|+++|    ..   .....++..+|..+.-..+..    ...+|.|+--+
T Consensus        13 ~~nMKILVTG-gsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----~~~~d~Vih~a   87 (363)
T d2c5aa1          13 SENLKISITG-AGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV----TEGVDHVFNLA   87 (363)
T ss_dssp             TSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH----HTTCSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHH----hhcCCeEeecc
Confidence            3567899888 79999999988763 356899999    11   123467888886653211111    24689888654


Q ss_pred             C
Q 042171           75 D   75 (125)
Q Consensus        75 ~   75 (125)
                      .
T Consensus        88 ~   88 (363)
T d2c5aa1          88 A   88 (363)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.14  E-value=0.91  Score=28.68  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             CCCEEEEEcC--cccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGV--FTGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~--g~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+  +.|..++.++++.+ ..+|+++|
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~   60 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVD   60 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccc-cccccccc
Confidence            3458999996  46777888888775 46899998

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.05  E-value=0.33  Score=32.56  Aligned_cols=27  Identities=19%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171           44 NFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus        44 ~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      +++.||+.+.++.+.     ++++|+|++|-.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPP   32 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPP   32 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCC
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCC
Confidence            589999999999873     688999999843

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=1.6  Score=27.55  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=24.1

Q ss_pred             CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171            5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ..+||-+|+| .|..++.++++.+ ..+|+++|
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d   58 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTD   58 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcC-CceEEecc
Confidence            4689999985 4677777888875 35899999

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.34  E-value=0.95  Score=28.56  Aligned_cols=31  Identities=16%  Similarity=0.076  Sum_probs=25.7

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ...+||-+|+| .|..++.++++.+  .+|+++|
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~   57 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTA   57 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhc--ccccccc
Confidence            34689999988 7888888998874  7999999

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=82.12  E-value=1  Score=29.01  Aligned_cols=31  Identities=23%  Similarity=0.197  Sum_probs=27.1

Q ss_pred             CCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171            5 LKKTIEIGVFT-GYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         5 ~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD   36 (125)
                      ..+||-+|||. |..++.++++.+ ..+|+++|
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d   60 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAID   60 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhC-Cceeeeec
Confidence            46899999998 999999999986 46899999

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=82.11  E-value=0.39  Score=36.58  Aligned_cols=22  Identities=9%  Similarity=-0.170  Sum_probs=18.8

Q ss_pred             CCEEEEEcCcccHHHHHHHhhC
Q 042171            5 LKKTIEIGVFTGYSLFLTALTI   26 (125)
Q Consensus         5 ~~~vLeiG~g~G~~t~~la~~~   26 (125)
                      ..+|+|-+||+|...+.+.+.+
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l  186 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYV  186 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHH
T ss_pred             chhhcchhhhcchhhHHHHHHH
Confidence            4589999999999999887765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.04  E-value=0.48  Score=32.09  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=23.9

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171           42 KINFIESEALSVLDQLLKDSENEVNFDYAFMDAD   75 (125)
Q Consensus        42 ~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~   75 (125)
                      +-.++.||+++.+..+     +++++|+||.|-.
T Consensus         4 ~~~~~~~D~le~l~~l-----~d~SIDliitDPP   32 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKL-----PDDSVQLIICDPP   32 (279)
T ss_dssp             EEEEEECCHHHHHHTS-----CTTCEEEEEECCC
T ss_pred             cceEEechHHHHHhhC-----cCCCccEEEECCC
Confidence            4468899999999887     3689999999854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.83  E-value=2.2  Score=26.60  Aligned_cols=31  Identities=19%  Similarity=0.035  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171            4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID   36 (125)
Q Consensus         4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD   36 (125)
                      +..+||-+|+| .|..++.+++..+  .+|+++|
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~   58 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMG--LHVAAID   58 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcC--Cccceec
Confidence            34688889976 4777778888874  7999999

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=1.4  Score=27.92  Aligned_cols=74  Identities=11%  Similarity=0.109  Sum_probs=43.7

Q ss_pred             CCEEEEEcCc--ccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171            5 LKKTIEIGVF--TGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF   71 (125)
Q Consensus         5 ~~~vLeiG~g--~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~   71 (125)
                      .++||-.|.+  .|..++.+|+..  +.+|++++           .|...-+.....|..+.+.++.    +...+|+|+
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t----~g~g~d~v~  102 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEIT----GGKKVRVVY  102 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT----TTCCEEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHh----CCCCeEEEE
Confidence            4588888544  678888899886  58999998           3433223333455555544442    246799766


Q ss_pred             EcCCCcCCHHHHh
Q 042171           72 MDADKDNYCNYMR   84 (125)
Q Consensus        72 id~~~~~~~~~~~   84 (125)
                      --.........++
T Consensus       103 d~~g~~~~~~~~~  115 (179)
T d1qora2         103 DSVGRDTWERSLD  115 (179)
T ss_dssp             ECSCGGGHHHHHH
T ss_pred             eCccHHHHHHHHH
Confidence            4333333333444

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.51  E-value=3.7  Score=28.21  Aligned_cols=69  Identities=17%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe------------CCCCCcEEEEecchHHH--HHHHhhcCCCCCcee
Q 042171            4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID------------ARVDHKINFIESEALSV--LDQLLKDSENEVNFD   68 (125)
Q Consensus         4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD------------~~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD   68 (125)
                      +.++||-.|. +|+.+.++++.+- .+-+|++++            ....++++++.+|..+.  +.....    ...+|
T Consensus         7 ~~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIR----EFQPE   81 (356)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHH----HHCCS
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhh----hchhh
Confidence            4589999884 5999999988773 356899999            12346799999997643  222221    24578


Q ss_pred             EEEEcCCCc
Q 042171           69 YAFMDADKD   77 (125)
Q Consensus        69 ~v~id~~~~   77 (125)
                      .|+.-++..
T Consensus        82 ~v~~~aa~~   90 (356)
T d1rkxa_          82 IVFHMAAQP   90 (356)
T ss_dssp             EEEECCSCC
T ss_pred             hhhhhhccc
Confidence            888766643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=80.06  E-value=0.57  Score=32.19  Aligned_cols=28  Identities=11%  Similarity=0.235  Sum_probs=23.5

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171           42 KINFIESEALSVLDQLLKDSENEVNFDYAFMDA   74 (125)
Q Consensus        42 ~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~   74 (125)
                      .=++++||+++.+..+     +++++|+|++|-
T Consensus        12 ~~~l~~GD~le~l~~l-----~~~sVdli~tDP   39 (320)
T d1booa_          12 NGSMYIGDSLELLESF-----PEESISLVMTSP   39 (320)
T ss_dssp             SEEEEESCHHHHGGGS-----CSSCEEEEEECC
T ss_pred             CCEEEehhHHHHHhhC-----ccCCCCEEEECC
Confidence            3489999999998877     368999999984