Citrus Sinensis ID: 042181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHSKYPGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQLDKPR
Secondary Structure (PSIPRED)
cccEEEEEEEEcccEEEEEcccccccccccccccEEEEEccEEEccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccEEEEEcHHHHEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEEEEcccccccccccHHHcEEEEEEEEEccccEEEEEEccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccccccccHccccccccccccEEccHHHHHHcccccEccccccccccccEEEEEEccccccccccccccccccccccEEEEccHHHEEEcccccccEEEccccccccccccccEEEEcccccEEEEEEEEcccccHHHHccccccccccccccccccccccEEEEEccHHHHHHHEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEEEEccccHccccccccccEEEEccccc
Coil and Loop (DISEMBL)
mplilfpfykqcegtmvldvpstsplsgylspgdvivsldgihihneQDWMEVAALLDkytpqnsshskypglraadgrkgycvsnymieeskkiqlldnqsacpndftAFVTVQCFDISIsvnvssegdqlnklenvyclnandivklkkcgdgwvtsstngshcvcskeescltpvqlpglawveitysrpysleckqlsrssvsdtrttdftdphcggtfvfFGDVIFMAQSvsltqyqprwassfgaylpNILRKSLICIFHVSLTLALLnslpayfldgesIFEVTLCFItslsprqrekvrHDCRYEIQVAIDITVNAAWTRVTIVFGsnehstcimshhGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSshvsfeilgfgediflprlrggsltyqldkpr
Flexible Loop (DISEMBL)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQnsshskypglraadgrKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSlsprqrekvRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLlfklddsrerRRLAVNILWCSSHVSFEILGFGEDIflprlrggsltyqldkpr
Low Complexity Region (SEG)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHSKYPGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLsrssvsdtrttdftdPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQLDKPR
Disordered region (IsUnstruct)
**LILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYT***********LRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQL*********TTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTY******
Disordered Region (DISOPRED)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTP*************ADGRKGYCVSNYMIEES********QSACPNDFTAFVTVQCFDISISVNVSSEG***NKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSL**K****************DPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLL*******E**RLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQ*****
Disordered Region (DISEMBL)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKY*********YPGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECK************TDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQLDKPR
Disordered Region (DISPRO)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYT*************AADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQLD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHSKYPGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRERRRLAVNILWCSSHVSFEILGFGEDIFLPRLRGGSLTYQLDKPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
224072422	509	predicted protein [Populus trichocarpa]	0.637	0.522	0.608	3e-87
255583910	537	protease m50 membrane-bound transcriptio	0.654	0.508	0.578	1e-86
356560965	539	PREDICTED: membrane-bound transcription	0.729	0.564	0.503	5e-80
357517351	591	Membrane-bound transcription factor site	0.707	0.499	0.508	3e-78
388510590	537	unknown [Medicago truncatula]	0.707	0.549	0.508	5e-78
238480863	374	Peptidase M50 family protein [Arabidopsi	0.690	0.770	0.503	1e-75
449456427	541	PREDICTED: membrane-bound transcription	0.693	0.534	0.478	5e-70
449497430	447	PREDICTED: LOW QUALITY PROTEIN: membrane	0.693	0.646	0.478	3e-69
238480861	488	Peptidase M50 family protein [Arabidopsi	0.630	0.538	0.461	2e-65
297597298	331	Os01g0654200 [Oryza sativa Japonica Grou	0.736	0.927	0.385	5e-57

>gi|224072422|ref|XP_002303727.1| predicted protein [Populus trichocarpa] gi|222841159|gb|EEE78706.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/268 (60%), Positives = 198/268 (73%), Gaps = 2/268 (0%)

Query: 16  MVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHSK-YPGLR 74
           +VLDVPSTSPLSGYLSPGD IVSLDG  IHN+Q+WME  AL+D+ T Q+S+ SK + GL 
Sbjct: 224 VVLDVPSTSPLSGYLSPGDAIVSLDGKRIHNDQEWMETTALIDERTLQSSNLSKSFEGLA 283

Query: 75  AADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNK 134
                KGYCV   +IEES ++  ++NQSACP+D T FV VQCF+ S S NV+ E D +++
Sbjct: 284 IVHQMKGYCVPTSVIEESNEMLFIENQSACPDDLTEFVAVQCFNSSKSDNVNIE-DGISQ 342

Query: 135 LENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPY 194
            +  +CLNA D+VKL KCGDGWVT  T GS C+CS+EE CL PV LPG  WVEIT++ PY
Sbjct: 343 RQRRHCLNAKDVVKLNKCGDGWVTEITKGSSCLCSQEEYCLNPVPLPGSIWVEITFASPY 402

Query: 195 SLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWASSFGAYLP 254
           S EC QL R+S   +  +DF++  CGGTFVF GD+I MA SV LT YQPRW  SF A+LP
Sbjct: 403 SPECLQLGRNSFPASGASDFSEHKCGGTFVFVGDLISMAHSVRLTAYQPRWGFSFSAHLP 462

Query: 255 NILRKSLICIFHVSLTLALLNSLPAYFL 282
           NIL KSL+  FHVSLTLALLNSLP +  
Sbjct: 463 NILEKSLMYTFHVSLTLALLNSLPFFMF 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583910|ref|XP_002532703.1| protease m50 membrane-bound transcription factor site 2 protease, putative [Ricinus communis] gi|223527549|gb|EEF29670.1| protease m50 membrane-bound transcription factor site 2 protease, putative [Ricinus communis]

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/275 (57%), Positives = 197/275 (71%), Gaps = 2/275 (0%)

Query: 7   PFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSS 66
           PFY   E  MVL+VPS SPLSGYLSPGD+IVSLDG  IHNEQ+WME+ AL+ +    +S+
Sbjct: 218 PFYMHGESLMVLNVPSASPLSGYLSPGDIIVSLDGRRIHNEQEWMEMTALIHQQALPSSN 277

Query: 67  HSKYP-GLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNV 125
           HS+   G      R GYCV   MIEESKKI L D+QSACP++ T FV +QCF  S   + 
Sbjct: 278 HSENSRGSSIVHSRNGYCVPTSMIEESKKIHLADDQSACPDNLTEFVAIQCFGSSHLHDA 337

Query: 126 SSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAW 185
           + E   L++ + ++CL+A D VKLK+C  GW T  TNGS C+CS++E CL+PV  PGL W
Sbjct: 338 TFENGHLSRKDGMHCLDARDAVKLKRCDRGWATEITNGSSCLCSQDELCLSPVHFPGLIW 397

Query: 186 VEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRW 245
            EITYSRPYS EC  L ++SV D+  TDFT+ +CGGTFVF G+VI MA S+ LT YQPRW
Sbjct: 398 AEITYSRPYSPECLLLGKNSVPDSE-TDFTEDNCGGTFVFVGEVISMAHSLQLTAYQPRW 456

Query: 246 ASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAY 280
           A +F AY+P +L KSL C F VSLT+ALLNSLP +
Sbjct: 457 AFTFSAYIPKVLEKSLTCTFQVSLTVALLNSLPMW 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560965|ref|XP_003548756.1| PREDICTED: membrane-bound transcription factor site-2 protease-like [Glycine max]

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 159/316 (50%), Positives = 202/316 (63%), Gaps = 12/316 (3%)

Query: 1   MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKY 60
           +P+ILFPFY      MVL+VP TSPL GYL+PGDVI+S+D + I N Q+W+++  L    
Sbjct: 213 LPMILFPFYSSDSSPMVLNVPPTSPLFGYLAPGDVILSVDNVTIRNAQEWLKLNTLTYNI 272

Query: 61  TPQNSSHSKYPG-LRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDI 119
              N + S+  G L   +  KGYCV ++M++ESK  +LL+NQ ACP++ TAFV   C   
Sbjct: 273 KLNNVNVSQRSGNLGVINRMKGYCVPSFMMDESKITELLENQHACPSELTAFVKSLC--- 329

Query: 120 SISVNVS-----SEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESC 174
             S NV+     SE D LN+  N+YCLNA D+VK  +CGD W  + T G  C CS++E C
Sbjct: 330 --SANVTLDDGQSETDLLNRGWNMYCLNAKDVVKRYRCGDDWGLAITKGGGCTCSQDEFC 387

Query: 175 LTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQ 234
           L PVQ PG  WVEI YSR  S EC    ++    + T+   + +CGGTF+F GDVI MA 
Sbjct: 388 LAPVQEPGSVWVEIAYSRT-SHECLSHVQNRFPFSETSGVKETNCGGTFIFVGDVISMAH 446

Query: 235 SVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF 294
           S+ LT YQPRW     AY PN+L + LI  FHVSL LALLN LP YFLDGESI + TL  
Sbjct: 447 SIQLTSYQPRWGPQIVAYFPNLLERILIWTFHVSLALALLNGLPVYFLDGESILDATLSH 506

Query: 295 ITSLSPRQREKVRHDC 310
            TSLSP +R+KV   C
Sbjct: 507 FTSLSPGKRKKVLRLC 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517351|ref|XP_003628964.1| Membrane-bound transcription factor site-2 protease [Medicago truncatula] gi|355522986|gb|AET03440.1| Membrane-bound transcription factor site-2 protease [Medicago truncatula]

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/299 (50%), Positives = 192/299 (64%), Gaps = 4/299 (1%)

Query: 9   YKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHS 68
           Y    G MV+DVPSTSPL GYL+PGDVI+S+D + I N Q+W+++  L      +N + S
Sbjct: 275 YSSGHGPMVMDVPSTSPLYGYLAPGDVILSVDNVRIRNAQEWLKLNTLTYGIQLKNVNIS 334

Query: 69  KYPG-LRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSS 127
           ++ G L A +  KGYCV + ++E SK   LL+NQ  C ++  AFV + C       +  S
Sbjct: 335 QHTGDLAALNNGKGYCVPSLVMEASKITGLLENQLVCSSELNAFVKISCSGNITLDDGQS 394

Query: 128 EGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVE 187
           E D  N   N+YCLNA D+VKL KCGDGW  + +NGS C CS +E CL PVQ PG+ WVE
Sbjct: 395 ETDLSNGRRNMYCLNAKDVVKLDKCGDGWGLAKSNGSSCTCSLDEFCLAPVQEPGMVWVE 454

Query: 188 ITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWAS 247
           ITYSRP   EC +   +S   + T+   + +CG TF+F GDVI MA S+ LT YQPRW  
Sbjct: 455 ITYSRPQ--ECLR-EENSFPVSTTSSLKERNCGATFIFVGDVISMAHSIHLTSYQPRWGP 511

Query: 248 SFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKV 306
              AY PN L + LI  FH+SL LALLN LP YFLDGESI + TL   TSLSPR+R KV
Sbjct: 512 KIVAYFPNFLERFLIWTFHISLALALLNGLPVYFLDGESILDATLSHYTSLSPRKRNKV 570

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510590|gb|AFK43361.1| unknown [Medicago truncatula]

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/299 (50%), Positives = 192/299 (64%), Gaps = 4/299 (1%)

Query: 9   YKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHS 68
           Y    G MV+DVPSTSPL GYL+PGDVI+S+D + I N Q+W+++  L      +N + S
Sbjct: 221 YSSGHGPMVMDVPSTSPLYGYLAPGDVILSVDNVRIRNAQEWLKLNTLTYGIQLKNVNIS 280

Query: 69  KYPG-LRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSS 127
           ++ G L A +  KGYCV + ++E SK   LL+NQ  C ++  AFV + C       +  S
Sbjct: 281 QHTGDLAALNNGKGYCVPSLVMEASKITGLLENQLVCSSELNAFVEISCSGNITLDDGQS 340

Query: 128 EGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVE 187
           E D  N   N+YCLNA D+VKL KCGDGW  + +NGS C CS +E CL PVQ PG+ WVE
Sbjct: 341 ETDLSNGRRNMYCLNAKDVVKLDKCGDGWGLAKSNGSSCTCSLDEFCLAPVQEPGMVWVE 400

Query: 188 ITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWAS 247
           ITYSRP   EC +   +S   + T+   + +CG TF+F GDVI MA S+ LT YQPRW  
Sbjct: 401 ITYSRPQ--ECLR-EENSFPVSTTSSLKERNCGATFIFVGDVISMAHSIHLTSYQPRWGP 457

Query: 248 SFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKV 306
              AY PN L + LI  FH+SL LALLN LP YFLDGESI + TL   TSLSPR+R KV
Sbjct: 458 KIVAYFPNFLERFLIWTFHISLALALLNGLPVYFLDGESILDATLSHYTSLSPRKRNKV 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480863|ref|NP_001154256.1| Peptidase M50 family protein [Arabidopsis thaliana] gi|332658904|gb|AEE84304.1| Peptidase M50 family protein [Arabidopsis thaliana]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/314 (50%), Positives = 196/314 (62%), Gaps = 26/314 (8%)

Query: 1   MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKY 60
           +P++L PFYK  E   V+DVPS SPL GYLSPGDVIVSLDGI +H   +W+E+AA+LDK 
Sbjct: 57  LPVMLSPFYKHGESLTVVDVPSVSPLFGYLSPGDVIVSLDGIQVHKPSEWLELAAILDKE 116

Query: 61  TPQNSSHSKY-PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDI 119
             + S+ S Y  G R     KGYCV   +IEE  K ++++NQ  CP D TAF T+ C + 
Sbjct: 117 NSKTSNGSLYLGGSRRFHHGKGYCVPISLIEEGYKGKMVENQFVCPGDLTAFRTMPCSNA 176

Query: 120 SISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSS--TNGSHCVCSKEESCLTP 177
           +I              E   CL+A DIVKL+KCGDGWVT+S   N S CVC + + CL  
Sbjct: 177 AIR-------------EVSVCLDAKDIVKLQKCGDGWVTTSDTDNQSDCVCPQGDLCLQA 223

Query: 178 VQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVS 237
           +Q PG+ W EITY R  S +C +L           DF   +C GTFVF GD+I M+ SV 
Sbjct: 224 MQSPGVLWTEITYKRTSSQDCSRLG---------LDFNTSNCLGTFVFVGDLIAMSHSVH 274

Query: 238 LTQYQPRWA-SSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFIT 296
           LT YQPRW  + FG   PNIL +SL C FHVSL L LLNSLP Y+LDGESI E +L   T
Sbjct: 275 LTAYQPRWLFNFFGKSFPNILERSLTCTFHVSLALVLLNSLPVYYLDGESILESSLQSFT 334

Query: 297 SLSPRQREKVRHDC 310
            LSPR+++K    C
Sbjct: 335 WLSPRKKKKALQVC 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456427|ref|XP_004145951.1| PREDICTED: membrane-bound transcription factor site-2 protease-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 198/301 (65%), Gaps = 12/301 (3%)

Query: 9   YKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHS 68
           Y   +   VLDVP TSPLS YLS G VI+SLDG+H+H+  DW+ ++A +   T QN +HS
Sbjct: 224 YIHGQSPTVLDVPYTSPLSSYLSHGHVILSLDGMHVHSVDDWINLSAQISDLTFQNETHS 283

Query: 69  KY-PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSS 127
           +     + A+GR+GYC  N+M++ES K+Q   +QS C  DFT+F ++ C   +  ++  +
Sbjct: 284 RLVENNQMANGRRGYCFPNFMLKESNKVQFTHDQSTCFGDFTSFTSIPCVSSAGLIDGYT 343

Query: 128 EGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNG--SHCVCSKEESCLTPVQLPGLAW 185
           E +  N+ E +YCLN ND++KL KC   W  ++ N   S C+CS++E+CL+PVQ+PGL W
Sbjct: 344 EDNYSNRKEGIYCLNVNDVMKLNKCSS-WDKAAINDNTSSCMCSQDETCLSPVQMPGLVW 402

Query: 186 VEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRW 245
           VEITY  PYS +C        S +R       +C GTF+F GDV+ MA+S+ LT Y+PR 
Sbjct: 403 VEITYLNPYSSDC--------SYSREYPLPSSNCSGTFIFVGDVVSMARSIQLTMYRPRL 454

Query: 246 ASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREK 305
              F  YLP++L K L C+FH SL LALLNSLP Y LDGESI E+ +  +TSLSPR +EK
Sbjct: 455 DFHFAIYLPDVLEKILSCLFHTSLALALLNSLPVYCLDGESILEIIIFQLTSLSPRNKEK 514

Query: 306 V 306
           V
Sbjct: 515 V 515

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497430|ref|XP_004160399.1| PREDICTED: LOW QUALITY PROTEIN: membrane-bound transcription factor site-2 protease-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 197/301 (65%), Gaps = 12/301 (3%)

Query: 9   YKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHS 68
           Y   +   VLDVP TSPLS YLS G VI+SLDG+H+H+  DW+ ++A +   T QN +HS
Sbjct: 130 YIHGQSPTVLDVPYTSPLSSYLSHGHVILSLDGMHVHSVDDWINLSAQISDLTFQNETHS 189

Query: 69  KY-PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSS 127
           +     + A+GR+GYC  N+M++ES K+Q   +QS C  DFT+F ++ C   +  ++  +
Sbjct: 190 RLVENNQMANGRRGYCFPNFMLKESNKVQFTHDQSTCFGDFTSFTSIPCVSSAGLIDGYT 249

Query: 128 EGDQLNKLENVYCLNANDIVKLKKCGDGWVTSSTNG--SHCVCSKEESCLTPVQLPGLAW 185
           E +  N+ E +YCLN ND++KL KC   W  ++ N   S C+CS++E+CL+PVQ+PGL W
Sbjct: 250 EDNYSNRKEGIYCLNVNDVMKLNKCSS-WDKAAINDNTSSCMCSQDETCLSPVQMPGLVW 308

Query: 186 VEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRW 245
           VEITY  PYS +C        S +R       +C GTF F GDV+ MA+S+ LT Y+PR 
Sbjct: 309 VEITYLNPYSSDC--------SYSREYPLPSSNCSGTFXFVGDVVSMARSIQLTMYRPRL 360

Query: 246 ASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREK 305
              F  YLP++L K L C+FH SL LALLNSLP Y LDGESI E+ +  +TSLSPR +EK
Sbjct: 361 DFHFAIYLPDVLEKILSCLFHTSLALALLNSLPVYCLDGESILEIIIFQLTSLSPRNKEK 420

Query: 306 V 306
           V
Sbjct: 421 V 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480861|ref|NP_001154255.1| Peptidase M50 family protein [Arabidopsis thaliana] gi|332658903|gb|AEE84303.1| Peptidase M50 family protein [Arabidopsis thaliana]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 180/314 (57%), Gaps = 51/314 (16%)

Query: 1   MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKY 60
           +P++L PFYK  E   V+DVPS SPL GYLSPGDVIVSLDGI +H   +W+E+AA+LDK 
Sbjct: 196 LPVMLSPFYKHGESLTVVDVPSVSPLFGYLSPGDVIVSLDGIQVHKPSEWLELAAILDKE 255

Query: 61  TPQNSSHSKY-PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDI 119
             + S+ S Y  G R     KGYCV   +IEE  K ++++NQ  CP D TAF T+ C + 
Sbjct: 256 NSKTSNGSLYLGGSRRFHHGKGYCVPISLIEEGYKGKMVENQFVCPGDLTAFRTMPCSNA 315

Query: 120 SISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSS--TNGSHCVCSKEESCLTP 177
           +I              E   CL+A DIVKL+KCGDGWVT+S   N S CVC + + CL  
Sbjct: 316 AIR-------------EVSVCLDAKDIVKLQKCGDGWVTTSDTDNQSDCVCPQGDLCLQA 362

Query: 178 VQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVS 237
           +Q PG+ W EITY R  S +C +L                                  V 
Sbjct: 363 MQSPGVLWTEITYKRTSSQDCSRL----------------------------------VH 388

Query: 238 LTQYQPRWA-SSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFIT 296
           LT YQPRW  + FG   PNIL +SL C FHVSL L LLNSLP Y+LDGESI E +L   T
Sbjct: 389 LTAYQPRWLFNFFGKSFPNILERSLTCTFHVSLALVLLNSLPVYYLDGESILESSLQSFT 448

Query: 297 SLSPRQREKVRHDC 310
            LSPR+++K    C
Sbjct: 449 WLSPRKKKKALQVC 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297597298|ref|NP_001043746.2| Os01g0654200 [Oryza sativa Japonica Group] gi|55296501|dbj|BAD68697.1| peptidase M50 family protein-like [Oryza sativa Japonica Group] gi|255673514|dbj|BAF05660.2| Os01g0654200 [Oryza sativa Japonica Group]

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 186/327 (56%), Gaps = 20/327 (6%)

Query: 14  GTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSH---SKY 70
           G M+  VP  SPLSGYLS  + I+S+DG++I    +WM++  L      Q SS       
Sbjct: 17  GLMITGVPEASPLSGYLSAHNFILSVDGLNITRADEWMKM--LTQDNVVQISSRDLLEGS 74

Query: 71  PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDISISVNVSSEGD 130
            G RA   RKGYCV N  ++ SK +  ++++ +CP+D  AF             +S +G 
Sbjct: 75  EGYRATGSRKGYCVPNSWMDASKNLWQINDKLSCPDDLVAFQ-----------RMSEKGI 123

Query: 131 QLNKLENVYCLNANDIVKLKKCGDGWVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITY 190
              ++E+ YCL A D+VKLKKCG+GW  +    S+  C ++E CL PV  PG++W+EI+Y
Sbjct: 124 GKKEVEDKYCLIAKDVVKLKKCGNGWRGAEDGRSNFACLEDEYCLVPVLGPGISWIEISY 183

Query: 191 SRPYSLECKQLSRSS--VSDTRTTDFTDPHCGGTFVFFGDVIFMAQSVSLTQYQPRWA-S 247
           +RPYSLEC Q  R+S  + D        P C GTFV+ GD++  A S+ L+ Y+PRW   
Sbjct: 184 ARPYSLECLQKERNSSLLHDGNNNPGLGP-CQGTFVYAGDLLSAAHSIKLSSYRPRWPLL 242

Query: 248 SFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVR 307
            F A +P IL+  L C+F VS  LA++N LP YFLDGE+I E  L + +  + RQ+  + 
Sbjct: 243 LFIADVPRILQDGLSCLFRVSAALAVVNCLPVYFLDGEAILETMLSYFSWFTRRQQRNIL 302

Query: 308 HDCRYEIQVAIDITVNAAWTRVTIVFG 334
             CR+   +   +  +     +T+ +G
Sbjct: 303 KVCRFLWTILSIVLFSRTLYSMTLYYG 329

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2120352	488	AT4G20310 [Arabidopsis thalian	0.450	0.385	0.495	2.3e-66
UNIPROTKB|K7GQR3	448	K7GQR3 "Uncharacterized protei	0.148	0.138	0.353	8.2e-05
UNIPROTKB|F1SQ07	458	F1SQ07 "Uncharacterized protei	0.148	0.135	0.353	8.7e-05
UNIPROTKB|O54862	510	MBTPS2 "Membrane-bound transcr	0.148	0.121	0.353	9.2e-05
RGD|1566171	517	Mbtps2 "membrane-bound transcr	0.148	0.119	0.353	9.5e-05
ZFIN|ZDB-GENE-030131-6598	494	mbtps2 "membrane-bound transcr	0.148	0.125	0.369	0.0001
UNIPROTKB|E1BR82	520	E1BR82 "Uncharacterized protei	0.119	0.096	0.384	0.00011
UNIPROTKB|E2RJ13	518	MBTPS2 "Uncharacterized protei	0.148	0.119	0.353	0.00012
UNIPROTKB|O43462	519	MBTPS2 "Membrane-bound transcr	0.148	0.119	0.353	0.00012
UNIPROTKB|Q5RAC8	521	MBTPS2 "Membrane-bound transcr	0.148	0.119	0.353	0.00012

TAIR|locus:2120352 AT4G20310 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 101/204 (49%), Positives = 129/204 (63%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKY 60
             +P++L PFYK  E   V+DVPS SPL GYLSPGDVIVSLDGI +H   +W+E+AA+LDK 
Sbjct:   196 LPVMLSPFYKHGESLTVVDVPSVSPLFGYLSPGDVIVSLDGIQVHKPSEWLELAAILDKE 255

Query:    61 TPQNSSHSKY-PGLRAADGRKGYCVSNYMIEESKKIQLLDNQSACPNDFTAFVTVQCFDI 119
               + S+ S Y  G R     KGYCV   +IEE  K ++++NQ  CP D TAF T+ C + 
Sbjct:   256 NSKTSNGSLYLGGSRRFHHGKGYCVPISLIEEGYKGKMVENQFVCPGDLTAFRTMPCSNA 315

Query:   120 SISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDGWVTSST--NGSHCVCSKEESCLTP 177
             +I   VS             CL+A DIVKL+KCGDGWVT+S   N S CVC + + CL  
Sbjct:   316 AIR-EVS------------VCLDAKDIVKLQKCGDGWVTTSDTDNQSDCVCPQGDLCLQA 362

Query:   178 VQLPGLAWVEITYSRPYSLECKQL 201
             +Q PG+ W EITY R  S +C +L
Sbjct:   363 MQSPGVLWTEITYKRTSSQDCSRL 386

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|K7GQR3 K7GQR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   171 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 229

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   230 AYEPQ 234

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|F1SQ07 F1SQ07 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   181 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 239

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   240 AYEPQ 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|O54862 MBTPS2 "Membrane-bound transcription factor site-2 protease" [Cricetulus griseus (taxid:10029)]

 Score = 94 (38.1 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   233 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 291

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   292 AYEPQ 296

GO:0005737 "cytoplasm" evidence=ISS

RGD|1566171 Mbtps2 "membrane-bound transcription factor peptidase, site 2" [Rattus norvegicus (taxid:10116)]

 Score = 94 (38.1 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   226 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 284

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   285 AYEPQ 289

GO:0003674 "molecular_function" evidence=ND

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-6598 mbtps2 "membrane-bound transcription factor protease, site 2" [Danio rerio (taxid:7955)]

 Score = 96 (38.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+ LFPFY    G +V +V   SP SG   L  GD+I  L+   +   QDW      L 
Sbjct:   217 LPIFLFPFYYTGAGALVTEVAEGSPSSGPRGLFLGDLITQLEDCTVRGVQDWHSCVQHLS 276

Query:    59 KYTPQ 63
              + PQ
Sbjct:   277 -HNPQ 280

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0051216 "cartilage development" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

UNIPROTKB|E1BR82 E1BR82 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 91 (37.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDW 50
             +P  LFPFY    G  V +V   SP +G   L  GD++ SL    I+  +DW
Sbjct:   243 LPAFLFPFYYTGVGAFVTEVTEDSPANGPRGLFVGDIVTSLQDCPIYGVEDW 294

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RJ13 MBTPS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   241 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 299

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   300 AYEPQ 304

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|O43462 MBTPS2 "Membrane-bound transcription factor site-2 protease" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   242 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 300

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   301 AYEPQ 305

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

UNIPROTKB|Q5RAC8 MBTPS2 "Membrane-bound transcription factor site-2 protease" [Pongo abelii (taxid:9601)]

 Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:     1 MPLILFPFYKQCEGTMVLDVPSTSPLSGY--LSPGDVIVSLDGIHIHNEQDWMEVAALLD 58
             +P+IL PFY    G ++ +V   SP  G   L  GD++  L    + N QDW E    + 
Sbjct:   244 LPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI- 302

Query:    59 KYTPQ 63
              Y PQ
Sbjct:   303 AYEPQ 307

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III001312 hypothetical protein (509 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	0.001

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 13 EGTMVLDVPSTSP--LSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTP 62
          +G +V  V   SP   +G L PGDVI++++G  + +  D       L +  P
Sbjct: 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRA---LAELKP 71

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	100.0
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	99.51
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.49
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.31
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.31
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.24
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.06
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.03
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	97.95
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.94
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.9
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	97.84
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	97.53
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	97.41
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.38
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	97.34
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.32
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	97.3
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.27
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.25
PRK10898	353	serine endoprotease; Provisional	97.25
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.22
PRK10139	455	serine endoprotease; Provisional	97.18
PRK10139	455	serine endoprotease; Provisional	97.13
PRK10942	473	serine endoprotease; Provisional	97.12
PRK10942	473	serine endoprotease; Provisional	97.1
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	96.92
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	96.85
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.85
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.7
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.69
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	96.63
PLN00049	389	carboxyl-terminal processing protease; Provisional	96.54
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.53
PF12812	78	PDZ_1: PDZ-like domain	96.41
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	96.23
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	96.18
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.12
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.06
COG0750	375	Predicted membrane-associated Zn-dependent proteas	95.88
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	95.45
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	95.33
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	95.24
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	95.22
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	95.01
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	94.75
KOG1320	473	consensus Serine protease [Posttranslational modif	94.52
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	93.88
KOG3580	1027	consensus Tight junction proteins [Signal transduc	93.55
PRK11186	667	carboxy-terminal protease; Provisional	93.41
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	92.99
KOG3552	1298	consensus FERM domain protein FRM-8 [General funct	91.2
COG3975	558	Predicted protease with the C-terminal PDZ domain	89.81
PRK09681	276	putative type II secretion protein GspC; Provision	87.7
KOG3532	1051	consensus Predicted protein kinase [General functi	87.27
KOG1421	955	consensus Predicted signaling-associated protein (	84.94
KOG3209	984	consensus WW domain-containing protein [General fu	83.89
KOG3129	231	consensus 26S proteasome regulatory complex, subun	83.76

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-45  Score=370.60  Aligned_cols=260  Identities=27%  Similarity=0.373  Sum_probs=220.1

Q ss_pred             CCcccccceeeCCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHHHhhcccCCCCCCCCCCCCccccCC
Q 042181            1 MPLILFPFYKQCEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTPQNSSHSKYPGLRAADG   78 (417)
Q Consensus         1 LP~lLsP~Y~~g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL~~~~~~~~~~~~~s~~~g~~~~~~   78 (417)
                      +|++|+|+|.+|+||.|++|+..||+.|  ||++||+|+++|||||++++||.+|+..                  ..++
T Consensus       208 lpViLsPfya~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~dW~ecl~t------------------sl~~  269 (484)
T KOG2921|consen  208 LPVILSPFYAHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSDWLECLAT------------------SLDK  269 (484)
T ss_pred             hhHhhchhhhcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHHHHHHHHh------------------hccc
Confidence            6999999999999999999999999999  8999999999999999999999999953                  2578


Q ss_pred             CceeeecchhHhhhhhhh--ccCCccCCCCCcCccceecceeccccccccccccccccccccccccccccccccc-cCCC
Q 042181           79 RKGYCVSNYMIEESKKIQ--LLDNQSACPNDFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKK-CGDG  155 (417)
Q Consensus        79 ~~GYCVp~s~ides~~~~--~~dg~~~CCd~~ta~~s~lCF~~~~l~~~~~e~~~~~~~~~~~CL~aR~vve~~~-C~~~  155 (417)
                      ++||||+++.+++...+.  .+||+..|||+.+-+..+.||.+.  ++  +      ...++.||+||.+.|... |++.
T Consensus       270 ~ngycvsas~vq~~sa~~h~~~dg~~~Ccde~n~t~~~vcf~ve--n~--~------n~p~h~clnar~~le~~~~~r~~  339 (484)
T KOG2921|consen  270 ENGYCVSASLVQGGSAFRHFTHDGKGYCCDESNITEGYVCFMVE--NQ--F------NCPGHDCLNARTMLESNAAIREV  339 (484)
T ss_pred             CCCeeecHHHHhccchhhhccccCceEecCCcCCccceeEEEEe--cc--c------CCCCccchHhHhhhhcccccccc
Confidence            999999999999888554  469999999999977779999875  22  1      134589999999998766 5542


Q ss_pred             CccccCCCCCCCCCCCCeeeeeeeCCCceEEEEEEecCCchhhhhccCCCcCCCCCCCCCCCCCCceEEEeechhhheee
Q 042181          156 WVTSSTNGSHCVCSKEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFFGDVIFMAQS  235 (417)
Q Consensus       156 w~~~~~~~s~C~C~~~~~Cv~P~l~~~~~lv~I~~~Rp~s~~~~~~~~~s~~~~~~~~f~~~~~~~~vLFvG~~~eL~~s  235 (417)
                              +.|  -++ .|+.|.+..+++|+..  +++        +|.+-            +..+++|+|+|+|+.++
T Consensus       340 --------~vc--~~g-kcI~kl~~~htr~vt~--k~~--------~n~se------------p~~p~~yvahp~~~~~t  386 (484)
T KOG2921|consen  340 --------SVC--LDG-KCIVKLQKCHTRWVTT--KDT--------DNQSE------------PVCPQVYVAHPQEKICT  386 (484)
T ss_pred             --------ccc--cCC-ceeeeehhccceEEEE--ecc--------ccCCC------------CCCCeeecCCcceeEEE
Confidence                    565  555 9999999999996654  454        33222            46699999999999999


Q ss_pred             EeecccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHH-hcccch--hcccccccccee
Q 042181          236 VSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF-ITSLSP--RQREKVRHDCRY  312 (417)
Q Consensus       236 V~VS~yvPR~~fl~~~~lP~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~-l~~l~p--r~r~~il~~c~~  312 (417)
                      |.+++|.||+.+ +.+++|+..++|+||+..+|.+||+.|++|||.|||+|||+++++. +..++-  ..+.-|-.....
T Consensus       387 v~~~~f~pR~~~-l~~a~p~~~~lfvkyl~~~s~~lai~na~PcF~fdg~~il~~f~~t~l~~~~~~~a~~d~i~~~i~~  465 (484)
T KOG2921|consen  387 VPALHFGPRLVK-LELANPNKPILFVKYLNEMSEMLAISNATPCFTFDGISILEHFELTALYLFTLSLALGDFIAMPIYA  465 (484)
T ss_pred             Eeecccccceee-EeecCCCchhhHHHHHHHHHHHHHHhcCccceeeccHHHHHHHHHHHHHhhhhhhhhhhhheehhhh
Confidence            999999999998 5999999999999999999999999999999999999999999998 444443  677777777777


Q ss_pred             hhhhHHHHHh
Q 042181          313 EIQVAIDITV  322 (417)
Q Consensus       313 ~~~~~~~~~~  322 (417)
                      +|.++|..+|
T Consensus       466 ~gs~l~a~~l  475 (484)
T KOG2921|consen  466 LGSQLIAHTL  475 (484)
T ss_pred             cchHHHHHHH
Confidence            7777666554

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=8.5e-15  Score=148.97  Aligned_cols=182  Identities=27%  Similarity=0.417  Sum_probs=150.6

Q ss_pred             CCCceeeecchhHhhhhhhhccCCccCCCC-CcCccceecceeccccccccccccccccccccccccccccccccccCCC
Q 042181           77 DGRKGYCVSNYMIEESKKIQLLDNQSACPN-DFTAFVTVQCFDISISVNVSSEGDQLNKLENVYCLNANDIVKLKKCGDG  155 (417)
Q Consensus        77 ~~~~GYCVp~s~ides~~~~~~dg~~~CCd-~~ta~~s~lCF~~~~l~~~~~e~~~~~~~~~~~CL~aR~vve~~~C~~~  155 (417)
                      +..+|||.+..-+.+...-++.+++..|+. +..+....+|-+.             .-++...|+.++.++++++|++.
T Consensus       291 ~dg~~~Ccde~n~t~~~vcf~ven~~n~p~h~clnar~~le~~~-------------~~r~~~vc~~gkcI~kl~~~htr  357 (484)
T KOG2921|consen  291 HDGKGYCCDESNITEGYVCFMVENQFNCPGHDCLNARTMLESNA-------------AIREVSVCLDGKCIVKLQKCHTR  357 (484)
T ss_pred             ccCceEecCCcCCccceeEEEEecccCCCCccchHhHhhhhccc-------------cccccccccCCceeeeehhccce
Confidence            568999999999987766666677777775 2333333333321             12445789999999999999999


Q ss_pred             Ccccc--CCCCCCCCC-------CCCeeeeeeeCCCceEEEEEEecCCchhhhhccCCCcCCCCCCCCCCCCCCceEEEe
Q 042181          156 WVTSS--TNGSHCVCS-------KEESCLTPVQLPGLAWVEITYSRPYSLECKQLSRSSVSDTRTTDFTDPHCGGTFVFF  226 (417)
Q Consensus       156 w~~~~--~~~s~C~C~-------~~~~Cv~P~l~~~~~lv~I~~~Rp~s~~~~~~~~~s~~~~~~~~f~~~~~~~~vLFv  226 (417)
                      |.|.+  ||+++|.|+       ++.+|.+|++..+.+++.++.+-|                          ..+++||
T Consensus       358 ~vt~k~~~n~sep~~p~~yvahp~~~~~tv~~~~f~pR~~~l~~a~p--------------------------~~~~lfv  411 (484)
T KOG2921|consen  358 WVTTKDTDNQSEPVCPQVYVAHPQEKICTVPALHFGPRLVKLELANP--------------------------NKPILFV  411 (484)
T ss_pred             EEEEeccccCCCCCCCeeecCCcceeEEEEeecccccceeeEeecCC--------------------------CchhhHH
Confidence            98877  778898774       567899999999999999987654                          3489999


Q ss_pred             echhhheeeEeecccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHhcccc
Q 042181          227 GDVIFMAQSVSLTQYQPRWASSFGAYLPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLS  299 (417)
Q Consensus       227 G~~~eL~~sV~VS~yvPR~~fl~~~~lP~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~~l~  299 (417)
                      |...+|...+.+++.+|+|.| =+.++-+-+|.-.+|++..|.|+..+|++|+|.+|||-|.-+++.. +|++
T Consensus       412 kyl~~~s~~lai~na~PcF~f-dg~~il~~f~~t~l~~~~~~~a~~d~i~~~i~~~gs~l~a~~llk~-~wls  482 (484)
T KOG2921|consen  412 KYLNEMSEMLAISNATPCFTF-DGISILEHFELTALYLFTLSLALGDFIAMPIYALGSQLIAHTLLKS-SWLS  482 (484)
T ss_pred             HHHHHHHHHHHHhcCccceee-ccHHHHHHHHHHHHHhhhhhhhhhhhheehhhhcchHHHHHHHHHh-hcee
Confidence            999999999999999999998 4888888889999999999999999999999999999999999977 4443

>TIGR00054 RIP metalloprotease RseP

Probab=98.49  E-value=2.7e-07  Score=95.60  Aligned_cols=43  Identities=26%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. ||++||+|++|||.+|++.+|+.+.+.
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~  246 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAVK  246 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            5899999999999998 999999999999999999999998884

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.31  E-value=5.4e-07  Score=72.26  Aligned_cols=44  Identities=27%  Similarity=0.572  Sum_probs=40.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|++.+++.+.+.
T Consensus        13 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~   57 (82)
T PF13180_consen   13 TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILS   57 (82)
T ss_dssp             SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHH
Confidence            35999999999999999 899999999999999999999999985

...

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.31  E-value=1.4e-06  Score=69.10  Aligned_cols=45  Identities=24%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             eCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ...|++|.+|.++|||+.+|++||+|++|||.+|++.+++.+.+.
T Consensus         6 ~~~Gv~V~~V~~~s~A~~gL~~GD~I~~Ing~~v~~~~~~~~~l~   50 (79)
T cd00986           6 TYHGVYVTSVVEGMPAAGKLKAGDHIIAVDGKPFKEAEELIDYIQ   50 (79)
T ss_pred             EecCEEEEEECCCCchhhCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            478999999999999998999999999999999999999998884

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.24  E-value=1.8e-06  Score=69.17  Aligned_cols=47  Identities=32%  Similarity=0.499  Sum_probs=43.1

Q ss_pred             eeeCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181            9 YKQCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus         9 Y~~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +....|++|.+|.++||++. ||++||+|++|||.+|++.+|+.+.+.
T Consensus         6 ~~~~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d~~~~l~   53 (79)
T cd00991           6 AEAVAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALK   53 (79)
T ss_pred             cccCCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHHHHHHHh
Confidence            44578999999999999997 999999999999999999999998884

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.06  E-value=5.5e-06  Score=63.47  Aligned_cols=43  Identities=35%  Similarity=0.529  Sum_probs=40.6

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      |++|.+|.++|||++ +|++||+|++|||.++.+.  +++.+.+..
T Consensus        14 ~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~   59 (70)
T cd00136          14 GVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKK   59 (70)
T ss_pred             CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhh
Confidence            999999999999998 8999999999999999998  999999853

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.03  E-value=7.4e-06  Score=65.30  Aligned_cols=45  Identities=31%  Similarity=0.474  Sum_probs=41.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++||++. +|++||+|++|||.+|++.+++.+.+..
T Consensus        23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~   68 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAE   68 (90)
T ss_pred             CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHh
Confidence            56999999999999996 8999999999999999999999988853

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=97.95  E-value=1.7e-05  Score=62.21  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=39.8

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .|++|.+|.++||+.. +|++||+|++|||.++.  +.+++.+.+.
T Consensus        26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~   71 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLK   71 (82)
T ss_pred             CCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHH
Confidence            5899999999999998 89999999999999999  7888888774

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.94  E-value=1.2e-05  Score=62.87  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ...++|..|.++||++. +|++||+|++|||.++++.+++.+.+..
T Consensus        11 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~l~~   56 (79)
T cd00989          11 PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQE   56 (79)
T ss_pred             ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHH
Confidence            34589999999999997 8999999999999999999999988853

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.90  E-value=1.5e-05  Score=62.81  Aligned_cols=42  Identities=21%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+.|++|..|.++||++. ||++||+|++|||.+|++   |.+.+.
T Consensus        10 ~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~---~~~~l~   52 (80)
T cd00990          10 EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA---LQDRLK   52 (80)
T ss_pred             cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH---HHHHHH
Confidence            366899999999999998 899999999999999987   666553

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=97.84  E-value=3e-05  Score=61.57  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=40.4

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .+.|++|..|.++||+.. +|++||+|++|||.++++.  +++.+.+
T Consensus        11 ~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l   57 (85)
T cd00988          11 DDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLL   57 (85)
T ss_pred             cCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHh
Confidence            378999999999999998 9999999999999999997  7887777

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=97.53  E-value=0.00012  Score=57.17  Aligned_cols=42  Identities=29%  Similarity=0.393  Sum_probs=37.0

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      .|++|..|.++||++. +|++||+|++|||.++.+..+...+.
T Consensus        26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~   68 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVD   68 (85)
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            7999999999999998 79999999999999999866655444

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=97.41  E-value=0.00019  Score=71.54  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHH-hcccch--hccccccccceehhhhHHH
Q 042181          257 LRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF-ITSLSP--RQREKVRHDCRYEIQVAID  319 (417)
Q Consensus       257 LE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~-l~~l~p--r~r~~il~~c~~~~~~~~~  319 (417)
                      +..++.|+..++++||++|.+|++-|||.+|+.+++.. ..+..+  .++..|=.+.+..|++++.
T Consensus       210 ~~~~l~~la~iNl~lavfNLlP~~pLDGg~il~~ll~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~  275 (277)
T cd06162         210 IETFLKYLISLSGALAVINAVPCFALDGQWILSTFLEATLVSVIVQKDKRDLIGFFILLVGSLLLA  275 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhCCccchhhhhhhhHhHHHHhHHHHhh
Confidence            56689999999999999999999999999999999998 444333  3333333455666666654

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.38  E-value=0.00022  Score=70.13  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHhh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAALL   57 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~~   57 (417)
                      .|++|+.+.++||++. ||++||+|++|||.+|.+.+++.+.+.+.
T Consensus       191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~  236 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQML  236 (259)
T ss_pred             eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhc
Confidence            7999999999999998 99999999999999999999999999654

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.34  E-value=0.00019  Score=65.79  Aligned_cols=62  Identities=26%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHhcccchhccccccccceehhhhHHHH
Q 042181          257 LRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSPRQREKVRHDCRYEIQVAIDI  320 (417)
Q Consensus       257 LE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~~l~pr~r~~il~~c~~~~~~~~~~  320 (417)
                      +..++.++..+++.++++|++|++.|||.+|++++++....  .+.+++....+.+.+.+++.+
T Consensus       122 ~~~~~~~~~~~n~~l~~~NllPi~~lDG~~il~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~  183 (192)
T PF02163_consen  122 FAEFLFFFAWLNFILALFNLLPIPPLDGGRILRALLEMIRR--RRINERIVQIILLIGLVLLLL  183 (192)
T ss_dssp             TEEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCcCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhEEEEEEE
Confidence            45678899999999999999999999999999999955321  234445555666665544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.32  E-value=0.00028  Score=73.87  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=37.9

Q ss_pred             EEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           16 MVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        16 ~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +|.+|.++|||++ ||++||+|++|||.+|++.+|....+..
T Consensus       129 lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~  170 (449)
T PRK10779        129 VVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVS  170 (449)
T ss_pred             cccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            6899999999999 9999999999999999999998877743

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=97.30  E-value=0.00021  Score=56.80  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=37.4

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. ||++||.|++|||.+|.+.  ++..+.+.
T Consensus        25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~   70 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLK   70 (81)
T ss_dssp             EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHH
T ss_pred             CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHH
Confidence            5999999999999998 7999999999999999965  55556554

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.27  E-value=0.00034  Score=72.37  Aligned_cols=45  Identities=31%  Similarity=0.383  Sum_probs=42.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|++.+++.+.+..
T Consensus       256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~  301 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGT  301 (428)
T ss_pred             CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            47999999999999997 9999999999999999999999998853

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.25  E-value=0.00029  Score=71.59  Aligned_cols=43  Identities=23%  Similarity=0.385  Sum_probs=41.1

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|..|.++||+++ +|++||+|++|||.+|++.+|+.+.+.
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~  321 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIA  321 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            6999999999999998 999999999999999999999999885

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.25  E-value=0.00034  Score=71.22  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++||+++ +|++||+|++|||.+|.+.+++.+.+.
T Consensus       278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~  322 (353)
T PRK10898        278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVA  322 (353)
T ss_pred             CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            37999999999999998 999999999999999999999998884

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.22  E-value=0.00037  Score=72.17  Aligned_cols=44  Identities=32%  Similarity=0.431  Sum_probs=41.7

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|++|.++|||+. ||++||+|++|||.+|++.+++.+.+.+
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~  406 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLDR  406 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            6999999999999997 8999999999999999999999999954

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=97.18  E-value=0.00042  Score=73.00  Aligned_cols=44  Identities=25%  Similarity=0.309  Sum_probs=41.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++||++. ||++||+|++|||.+|++.+|..+.+.
T Consensus       289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~  333 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIA  333 (455)
T ss_pred             CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            57999999999999987 999999999999999999999998885

>PRK10139 serine endoprotease; Provisional

Probab=97.13  E-value=0.00051  Score=72.36  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=41.5

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|++.++|.+.+.+
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~l~~  434 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAA  434 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            6999999999999997 9999999999999999999999999953

>PRK10942 serine endoprotease; Provisional

Probab=97.12  E-value=0.0005  Score=72.77  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=41.5

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|++|.++||++. ||++||+|++|||.+|.+.++|.+.+.+
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~~l~~  452 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRKILDS  452 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            5999999999999987 9999999999999999999999999853

>PRK10942 serine endoprotease; Provisional

Probab=97.10  E-value=0.00059  Score=72.24  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++||++. ||++||+|++|||.+|.+.++..+.+..
T Consensus       310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~  355 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGT  355 (473)
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHh
Confidence            47999999999999998 9999999999999999999999998853

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.92  E-value=0.0014  Score=59.72  Aligned_cols=43  Identities=33%  Similarity=0.352  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHh
Q 042181          253 LPNILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFI  295 (417)
Q Consensus       253 lP~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l  295 (417)
                      ....+..++.++..++..+|++|.+|++.|||.+|++++++..
T Consensus       112 ~~~~~~~~l~~~~~~n~~l~~fNLlPi~plDGg~il~~~l~~~  154 (180)
T cd05709         112 ASSGLANLLAFLALINLNLAVFNLLPIPPLDGGRILRALLEAI  154 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhHH
Confidence            3456788999999999999999999999999999999999884

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=96.85  E-value=0.00078  Score=58.60  Aligned_cols=40  Identities=28%  Similarity=0.293  Sum_probs=36.2

Q ss_pred             ccceeeCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC
Q 042181            6 FPFYKQCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH   45 (417)
Q Consensus         6 sP~Y~~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~   45 (417)
                      .|+-+++.|++||.|.++|||+- ||..+|-|.++||-...
T Consensus        52 ~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfT   92 (124)
T KOG3553|consen   52 NPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFT   92 (124)
T ss_pred             CCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeE
Confidence            57778899999999999999998 99999999999996554

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.85  E-value=0.0011  Score=69.54  Aligned_cols=42  Identities=26%  Similarity=0.367  Sum_probs=39.5

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +++|.+|.++|||+. ||++||+|++|||.+|++.+|+.+.+.
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~dl~~~l~  264 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLVR  264 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            589999999999998 999999999999999999999988884

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.002  Score=64.71  Aligned_cols=45  Identities=27%  Similarity=0.440  Sum_probs=42.6

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ...|++|.+|.++||+.. ++++||+|+++||.+|.+..++++.+.
T Consensus       268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~  313 (347)
T COG0265         268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVA  313 (347)
T ss_pred             CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHh
Confidence            367899999999999998 999999999999999999999999995

>TIGR00054 RIP metalloprotease RseP

Probab=96.69  E-value=0.0014  Score=68.25  Aligned_cols=45  Identities=24%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|.+|.+|.++|||++ ||++||+|++|||.++.+.+|..+.+..
T Consensus       127 ~~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia~  172 (420)
T TIGR00054       127 EVGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIAD  172 (420)
T ss_pred             CCCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            47999999999999999 9999999999999999999998887754

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=96.63  E-value=0.0026  Score=63.88  Aligned_cols=43  Identities=19%  Similarity=0.317  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|.+|.++|||+. ||++||+|++|||.+|++.  ++..+.+
T Consensus        61 ~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l  106 (334)
T TIGR00225        61 DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALI  106 (334)
T ss_pred             CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhc
Confidence            56899999999999998 9999999999999999874  3444444

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=96.54  E-value=0.0025  Score=65.72  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=32.4

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~   47 (417)
                      |++|..|.++|||+. ||++||+|++|||.+|.+.
T Consensus       103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~  137 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGL  137 (389)
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCC
Confidence            899999999999998 9999999999999999873

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.53  E-value=0.003  Score=66.02  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             ceeeCCceEEEEeCC--------CCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHhh
Q 042181            8 FYKQCEGTMVLDVPS--------TSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAALL   57 (417)
Q Consensus         8 ~Y~~g~Gv~V~~V~~--------~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~~   57 (417)
                      .|...+||+|++..+        +|||+. +|++||+|++|||.+|++.+|..+.+...
T Consensus       100 I~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL~~iL~~~  158 (402)
T TIGR02860       100 VKLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDLANLINKA  158 (402)
T ss_pred             EEEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhC
Confidence            466789999999743        689987 89999999999999999999999988654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF12812 PDZ_1: PDZ-like domain

Probab=96.41  E-value=0.0045  Score=50.76  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=42.2

Q ss_pred             eCCceEEEEeCCCCCCCCC-CCCCCeEEeeCCeecCChhhHHHHHHhh
Q 042181           11 QCEGTMVLDVPSTSPLSGY-LSPGDVIVSLDGIHIHNEQDWMEVAALL   57 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~gg-L~~GDvI~sINgc~V~~~~dW~~cL~~~   57 (417)
                      ..-|++++....+||+..+ +..|-+|++|||.|+.|.+++.+.++++
T Consensus        28 ~~~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~~vvk~i   75 (78)
T PF12812_consen   28 IPVGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDDFIKVVKKI   75 (78)
T ss_pred             CCCCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHHHHHHHHhC
Confidence            3556888899999998886 9999999999999999999999999754

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.23  E-value=0.0066  Score=56.65  Aligned_cols=40  Identities=33%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHH
Q 042181          255 NILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF  294 (417)
Q Consensus       255 ~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~  294 (417)
                      ..+..++.++..++..||++|.+|++-|||..|+++++..
T Consensus       115 ~~l~~~~~~~~~~Ni~l~lfNLlPipPLDG~~il~~~l~~  154 (181)
T cd06158         115 SFLFLMLAYGVLINLVLAVFNLLPIPPLDGSKILAALLPR  154 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHcch
Confidence            4567889999999999999999999999999999998854

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.18  E-value=0.0064  Score=57.07  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHccccccccchHHHHHHHHHHh
Q 042181          261 LICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFI  295 (417)
Q Consensus       261 l~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l  295 (417)
                      +.|+..+++.||++|.+|++-|||..|+.+++..+
T Consensus       113 ~~~~~~~n~~l~~fNLlPippLDGg~il~~~~~~~  147 (182)
T cd06163         113 LSFLALLSINLGILNLLPIPALDGGHLLFLLIEAI  147 (182)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            67888899999999999999999999999999874

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.12  E-value=0.0034  Score=66.25  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             EEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           17 VLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        17 V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      |.+|.|+|||+. ||++||+|++|||.+|++..|+...+.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l~   41 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLCA   41 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHhc
Confidence            678999999999 999999999999999999999877773

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.06  E-value=0.0096  Score=50.10  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             CCceEEEEeCCC--------CCCCC-C--CCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPST--------SPLSG-Y--LSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~--------SPl~g-g--L~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|..|..|-++        |||.. |  +++||+|++|||.+|....+.++.|..
T Consensus        11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~   66 (88)
T PF14685_consen   11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEG   66 (88)
T ss_dssp             TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHT
T ss_pred             CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcc
Confidence            778889999875        88888 3  779999999999999999999999953

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=95.88  E-value=0.012  Score=59.13  Aligned_cols=54  Identities=24%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHhc-ccch-hccccccc
Q 042181          255 NILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFIT-SLSP-RQREKVRH  308 (417)
Q Consensus       255 ~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~-~l~p-r~r~~il~  308 (417)
                      ..++.++.++.-+|..||++|++|...|||-||+..+++.+. +..+ +.+..+.+
T Consensus       297 ~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~g~~~~~~~~~~~~~  352 (375)
T COG0750         297 LGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALRGKPLSERVEAALYR  352 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            457889999999999999999999999999999999999964 5444 44444433

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=95.45  E-value=0.024  Score=54.78  Aligned_cols=41  Identities=34%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHhc
Q 042181          256 ILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFIT  296 (417)
Q Consensus       256 vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~  296 (417)
                      .+..++.++..+.+.||++|.+|++-|||..|+++++....
T Consensus       130 ~~~~~~~~~~~~Nl~l~~fNLlP~~PLDGgril~~ll~~~~  170 (227)
T cd06164         130 PLGVLLGYLALINLLLAVFNLLPAFPLDGGRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCCCCChHHHHHHHHHHhc
Confidence            45678899999999999999999999999999999997743

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=95.33  E-value=0.028  Score=53.31  Aligned_cols=41  Identities=37%  Similarity=0.407  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHhc
Q 042181          256 ILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFIT  296 (417)
Q Consensus       256 vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~  296 (417)
                      ....++.+...+...++++|.+|++-|||..|+++++....
T Consensus       113 ~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~il~~ll~~~~  153 (208)
T cd06161         113 PLSSLLEFLAQVNLILGLFNLLPALPLDGGRVLRALLWRRT  153 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCCChHHHHHHHHHHhc
Confidence            35667888888999999999999999999999999998754

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=95.24  E-value=0.027  Score=57.50  Aligned_cols=48  Identities=27%  Similarity=0.494  Sum_probs=44.2

Q ss_pred             ceeeCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181            8 FYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus         8 ~Y~~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .-.+-+||+|+.|..+||+.|-|+.||.|+.|||.++.+.++.++.+.
T Consensus       125 v~~~y~gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~s~~e~i~~v~  172 (342)
T COG3480         125 VEVTYAGVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFTSSDELIDYVS  172 (342)
T ss_pred             eEEEEeeEEEEEccCCcchhceeccCCeEEeeCCeecCCHHHHHHHHh
Confidence            334567999999999999999999999999999999999999999995

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=95.22  E-value=0.022  Score=59.50  Aligned_cols=45  Identities=29%  Similarity=0.425  Sum_probs=38.4

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHhhc
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAALLD   58 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~~~   58 (417)
                      .++.|.++.++|||++ ||++||+|++|||.++.+..- .++...++
T Consensus       112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~-~~av~~ir  157 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSL-DEAVKLIR  157 (406)
T ss_pred             CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCH-HHHHHHhC
Confidence            8999999999999999 899999999999999999754 44444443

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=95.01  E-value=0.022  Score=56.47  Aligned_cols=48  Identities=35%  Similarity=0.518  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHccccccccchHHHHHHHHHHhcccch-hccccccc
Q 042181          261 LICIFHVSLTLALLNSLPAYFLDGESIFEVTLCFITSLSP-RQREKVRH  308 (417)
Q Consensus       261 l~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~l~~l~p-r~r~~il~  308 (417)
                      +.|+..++..+|++|++|.+-|||.+|+++++..+..-.+ ++++++.+
T Consensus       194 l~~~~~~N~~l~lFNLlP~~PLDGg~il~~ll~~~~~~~~~~~~~~~~~  242 (263)
T cd06159         194 LYWIFWINFLLGLFNCLPAIPLDGGHVFRDLLEALLRRFPSEKAERVVN  242 (263)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            5577778999999999999999999999999999654333 33444433

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=94.75  E-value=0.024  Score=51.26  Aligned_cols=45  Identities=36%  Similarity=0.474  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCC-CCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSP-GDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~-GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|.-|++|.|+|||+. ||.+ .|-|+.+|+..+.+.+++.+.+.+
T Consensus        42 ~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l~~~v~~   88 (138)
T PF04495_consen   42 EEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDLFELVEA   88 (138)
T ss_dssp             CCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHHHHHHHH
T ss_pred             cceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHHHHHHHH
Confidence            67999999999999987 9999 699999999999999999999853

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.05  Score=58.18  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+|++|-.|.++||+.+ ++.+||+|.+|||.+|+|..+-++.+.
T Consensus       397 ~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~  441 (473)
T KOG1320|consen  397 VQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIE  441 (473)
T ss_pred             eeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHH
Confidence            35899999999999999 799999999999999999999999994

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=93.88  E-value=0.077  Score=51.12  Aligned_cols=40  Identities=35%  Similarity=0.389  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHH
Q 042181          255 NILRKSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF  294 (417)
Q Consensus       255 ~vLE~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~  294 (417)
                      ..+..++.++..+-+.||++|++|++-|||..|+++++..
T Consensus       134 ~~~~~~~~~la~~Nl~L~lFNLiPi~PLDGg~vlr~~~~~  173 (230)
T COG1994         134 SVLFAFLAALALVNLVLALFNLLPIPPLDGGRVLRALLPR  173 (230)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHccH
Confidence            4568899999999999999999999999999999998876

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=93.55  E-value=0.047  Score=59.79  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|+.|.+|.++|||++ ||+.||.|++||+.+.+|.  ++-...|
T Consensus       428 DVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfL  473 (1027)
T KOG3580|consen  428 DVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFL  473 (1027)
T ss_pred             ceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHH
Confidence            67999999999999999 9999999999999999984  4444444

>PRK11186 carboxy-terminal protease; Provisional

Probab=93.41  E-value=0.052  Score=60.27  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeC--CeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLD--GIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sIN--gc~V~~~~   48 (417)
                      +++++|..|.|+|||.+  +|++||.|++||  |.++.+..
T Consensus       254 ~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~  294 (667)
T PRK11186        254 DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVI  294 (667)
T ss_pred             CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccc
Confidence            56799999999999997  799999999999  66665544

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=92.99  E-value=0.11  Score=48.88  Aligned_cols=33  Identities=30%  Similarity=0.257  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHccccccccchHHHHHHHHHH
Q 042181          262 ICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF  294 (417)
Q Consensus       262 ~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~  294 (417)
                      .++..+.+.++++|.+|++-|||..|+++++..
T Consensus       116 ~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~  148 (183)
T cd06160         116 AVAGWVGLLVTALNLLPVGQLDGGHIVRALFGR  148 (183)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCH
Confidence            345667888999999999999999999998744

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]

Probab=91.20  E-value=0.22  Score=57.02  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             eeeCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHH
Q 042181            9 YKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus         9 Y~~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      |+.|.-|+|..|.++-|..|.|+|||.|+.|||-||.+. .|.+.+
T Consensus        71 fvagrPviVr~VT~GGps~GKL~PGDQIl~vN~Epv~da-prervI  115 (1298)
T KOG3552|consen   71 FVAGRPVIVRFVTEGGPSIGKLQPGDQILAVNGEPVKDA-PRERVI  115 (1298)
T ss_pred             eecCCceEEEEecCCCCccccccCCCeEEEecCcccccc-cHHHHH
Confidence            445888999999999999999999999999999999873 344444

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=89.81  E-value=0.26  Score=53.42  Aligned_cols=31  Identities=35%  Similarity=0.408  Sum_probs=29.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCe
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGI   42 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc   42 (417)
                      +.+.+|++|.++|||.+ ||.+||.|+.|||.
T Consensus       461 ~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         461 GGHEKITFVFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             CCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence            77899999999999999 99999999999999

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=87.70  E-value=0.63  Score=46.85  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CceEEEEeCCCCCCC--C--CCCCCCeEEeeCCeecCChhhHHHHHHhhc
Q 042181           13 EGTMVLDVPSTSPLS--G--YLSPGDVIVSLDGIHIHNEQDWMEVAALLD   58 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~--g--gL~~GDvI~sINgc~V~~~~dW~~cL~~~~   58 (417)
                      +|+.=--|.|+-..+  .  ||++||++++|||.++++.+.-.+.+.+++
T Consensus       204 ~Gl~GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~  253 (276)
T PRK09681        204 EGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLP  253 (276)
T ss_pred             CCceEEEECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhc
Confidence            453333355554332  2  899999999999999999998888887665

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=87.27  E-value=0.66  Score=51.87  Aligned_cols=46  Identities=22%  Similarity=0.302  Sum_probs=41.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHhh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAALL   57 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~~   57 (417)
                      ++-|.|-.|.++|||.+ .+.+|||++.|||.||+++..-.+.+..+
T Consensus       397 ~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~~q~~~~~~s~  443 (1051)
T KOG3532|consen  397 NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSERQATRFLQST  443 (1051)
T ss_pred             ceEEEEEEecCCChhhHhcCCCcceEEEecCccchhHHHHHHHHHhc
Confidence            66788999999999999 79999999999999999999988888543

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=84.94  E-value=1.1  Score=50.35  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .+||+|+..-.+|||...|..-.-|+.|||....+.+||+..+.+
T Consensus       861 p~gvyvt~rg~gspalq~l~aa~fitavng~~t~~lddf~~~~~~  905 (955)
T KOG1421|consen  861 PEGVYVTSRGYGSPALQMLRAAHFITAVNGHDTNTLDDFYHMLLE  905 (955)
T ss_pred             CCceEEeecccCChhHhhcchheeEEEecccccCcHHHHHHHHhh
Confidence            689999999999999999999999999999999999999999964

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=83.89  E-value=0.64  Score=52.18  Aligned_cols=39  Identities=26%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             EEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           17 VLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        17 V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      |-.|.++|||+.  .|++||-|..||||.|-|  ..|..+.++
T Consensus       782 iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK  824 (984)
T KOG3209|consen  782 IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK  824 (984)
T ss_pred             ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH
Confidence            667899999998  599999999999999987  456666653

>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]

Probab=83.76  E-value=1.1  Score=43.71  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             eEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           15 TMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        15 v~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      ++|-.|.|+|||+. ||.+||-|+++....-.|..+ .+-+
T Consensus       141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~-lq~i  180 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLP-LQNI  180 (231)
T ss_pred             EEEeecCCCChhhhhCcccCceEEEecccccccchh-HHHH
Confidence            58999999999998 999999999999988877777 3434

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	2e-05
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	4e-05
2kl1_A	94	YLBL protein; structure genomics, structural genom	8e-05
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	2e-04

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAALLDKYTP 62
          +G  +  V   SP S  L+PG VI S++G+      +    +A L   + 
Sbjct: 25 DGVQIDSVVPGSPASKVLTPGLVIESINGMPTS---NLTTYSAALKTISV 71

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQD 49
          +G  V+ V    P +  L  GD+I  +DG    + Q+
Sbjct: 7  DGVYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQE 43

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 10 KQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQD 49
           + +G  V+ V    P +G L  GD I ++DG  I+  + 
Sbjct: 2  NEAKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQ 41

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 14 GTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQD 49
          G     V    P  G +  GD I+S DG +  + + 
Sbjct: 2  GIYASSVVENMPAKGKIEVGDKIISADGKNYQSAEK 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.44
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.31
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.23
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.23
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.15
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.13
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.13
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.11
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.1
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.1
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.09
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.07
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.04
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.04
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.02
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.02
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.02
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.02
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.01
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.0
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.0
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.0
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	97.99
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	97.99
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.99
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	97.99
2ego_A	96	General receptor for phosphoinositides 1- associat	97.98
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	97.98
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	97.97
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	97.97
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	97.97
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	97.96
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.96
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	97.94
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	97.94
3khf_A	99	Microtubule-associated serine/threonine-protein ki	97.93
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	97.93
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	97.93
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	97.92
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	97.92
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	97.92
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.9
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	97.9
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	97.89
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	97.89
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	97.88
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	97.88
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	97.87
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	97.86
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	97.86
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	97.85
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	97.85
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	97.85
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	97.85
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	97.84
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	97.83
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	97.83
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	97.82
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	97.82
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	97.82
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	97.81
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	97.81
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	97.81
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	97.8
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.8
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	97.79
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	97.78
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	97.77
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	97.77
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	97.77
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.77
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	97.76
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	97.76
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	97.76
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	97.76
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	97.75
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	97.75
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	97.75
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	97.75
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	97.74
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	97.74
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.74
2awx_A	105	Synapse associated protein 97; membrane protein, s	97.73
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	97.73
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	97.73
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	97.72
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	97.72
2opg_A	98	Multiple PDZ domain protein; structural protein, s	97.72
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	97.72
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	97.71
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	97.71
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	97.71
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	97.71
2fne_A	117	Multiple PDZ domain protein; structural protein, s	97.71
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	97.71
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	97.7
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	97.69
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	97.69
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	97.69
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	97.69
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	97.69
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	97.69
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	97.68
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	97.68
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.68
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	97.67
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	97.67
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	97.67
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	97.65
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.65
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.65
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.64
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	97.64
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	97.63
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	97.63
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	97.63
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	97.62
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	97.62
4amh_A	106	Disks large homolog 1; permutation, protein foldin	97.61
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	97.61
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	97.61
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.6
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.6
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	97.6
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	97.59
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	97.59
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	97.58
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	97.57
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	97.56
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	97.56
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	97.55
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.54
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	97.54
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	97.54
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.53
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	97.52
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	97.52
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	97.52
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	97.51
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	97.51
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	97.51
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	97.51
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	97.5
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	97.48
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	97.48
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	97.47
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	97.46
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	97.46
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	97.45
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	97.44
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	97.43
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	97.43
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	97.42
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.42
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	97.41
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.41
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	97.41
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	97.38
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	97.35
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	97.35
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.33
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	97.31
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	97.29
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	96.39
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.28
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.26
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	97.25
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.25
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	97.24
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.24
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.23
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.19
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.18
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.16
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	97.14
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	97.12
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.1
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	97.07
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	97.01
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	97.0
4fgm_A	597	Aminopeptidase N family protein; structural genomi	96.99
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.91
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.87
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.82
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	96.79
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	96.72
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.62
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	96.61
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.5
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.47
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	96.38
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	96.26
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	96.09
3k50_A	403	Putative S41 protease; structural genomics, joint	95.91
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.79
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	95.7
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	94.73
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	94.5
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	94.34
1k32_A	1045	Tricorn protease; protein degradation, substrate g	94.24
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	93.98

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.44  E-value=2.1e-07  Score=76.08  Aligned_cols=45  Identities=24%  Similarity=0.521  Sum_probs=42.9

Q ss_pred             eCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ...|++|.+|.++|||++||++||+|++|||.+|.+.+++.+.|.
T Consensus         5 ~~~Gv~V~~V~~~spA~~GL~~GD~I~~Ing~~v~~~~dl~~~l~   49 (100)
T 3i18_A            5 TYDGVYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIH   49 (100)
T ss_dssp             CCCCEEEEEECTTSGGGGTCCTTCEEEEETTBCCSSHHHHHHHHH
T ss_pred             eCCCEEEEEeCCCCchHHCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            478999999999999999999999999999999999999999995

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.31  E-value=2.6e-07  Score=75.07  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=40.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +|++|.+|.++|||+.+|++||+|++|||.+|.+.+++.+.+.
T Consensus         1 ~Gv~V~~V~~~spA~~GL~~GD~I~~InG~~v~~~~~l~~~l~   43 (91)
T 2kjp_A            1 NGIYASSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYIS   43 (91)
T ss_dssp             CCSSCCCCCCSSCCSSCCCSSCEEEEETTBCCSSHHHHHHHHS
T ss_pred             CceEEEEECCCChHHHcCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            4899999999999999999999999999999999999998883

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.23  E-value=7.8e-07  Score=70.41  Aligned_cols=46  Identities=24%  Similarity=0.419  Sum_probs=41.9

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeec--CChhhHHHHHHh
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHI--HNEQDWMEVAAL   56 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V--~~~~dW~~cL~~   56 (417)
                      ...|++|..|.++|||+. ||++||+|++|||.+|  .+.+++.+.+..
T Consensus        26 ~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2eaq_A           26 DIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAK   74 (90)
T ss_dssp             ETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            367999999999999998 8999999999999999  888999888853

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.23  E-value=8.2e-07  Score=72.03  Aligned_cols=45  Identities=27%  Similarity=0.460  Sum_probs=42.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++|||+.+|++||+|++|||.+|.+.+++.+.+..
T Consensus         4 ~~Gv~V~~V~~~spA~~GL~~GD~Il~InG~~v~~~~~l~~~l~~   48 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVRE   48 (94)
T ss_dssp             CCCEECCCCCTTSTTBTTBCTTCEEEEETTBCCCCHHHHHHHHHH
T ss_pred             CCcEEEEEECCCChHHhCCCCCCEEEEECCEECCCHHHHHHHHHh
Confidence            579999999999999999999999999999999999999998853

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.15  E-value=1.6e-06  Score=69.84  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=40.2

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .+++.+.|.
T Consensus        33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   78 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR   78 (98)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3999999999999998 899999999999999999  888888884

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.13  E-value=9.9e-07  Score=70.21  Aligned_cols=52  Identities=17%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             cccceeeCC--ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181            5 LFPFYKQCE--GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus         5 LsP~Y~~g~--Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|.+..+.  |+.|..+.|+|||+. ||++||+|++|||.+|.+.+|+.+.+..
T Consensus         9 ~~p~~~~g~~~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~   63 (87)
T 2i6v_A            9 LSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQS   63 (87)
T ss_dssp             EEEEEETTEEEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHT
T ss_pred             eEEEeeCCeEEEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHh
Confidence            345555443  888999999998888 9999999999999999999999888853

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.13  E-value=2.9e-06  Score=73.10  Aligned_cols=45  Identities=29%  Similarity=0.332  Sum_probs=42.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++|||+.||++||+|++|||.+|.+.+++.+.+..
T Consensus        56 ~~g~~V~~V~~~spA~aGL~~GD~I~~inG~~v~~~~~l~~~l~~  100 (134)
T 2l97_A           56 TSGVIVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYN  100 (134)
T ss_dssp             CSCEEEEECSTTSGGGTTSCSSCEEEEETTEECCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            579999999999999988999999999999999999999998853

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.11  E-value=1.4e-06  Score=69.19  Aligned_cols=43  Identities=23%  Similarity=0.219  Sum_probs=39.8

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh--hHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ--DWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~--dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+.+  ++.+.+.
T Consensus        27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIK   72 (91)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5899999999999997 89999999999999999988  8888774

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.10  E-value=1.9e-06  Score=68.30  Aligned_cols=43  Identities=16%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.|.
T Consensus        28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   73 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK   73 (90)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred             CCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5899999999999998 8999999999999999998  78887773

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.10  E-value=1.8e-06  Score=68.06  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .+++.+.+.
T Consensus        26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   71 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR   71 (87)
T ss_dssp             EEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999998 899999999999999999  788888885

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.09  E-value=2.2e-06  Score=70.86  Aligned_cols=44  Identities=30%  Similarity=0.432  Sum_probs=41.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.+++.+.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~   78 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVR   78 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHh
Confidence            68999999999999998 999999999999999999999988884

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.07  E-value=5.1e-06  Score=66.42  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             eCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh
Q 042181           11 QCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~   47 (417)
                      .+.|++|..|.++|||+++|++||+|++|||.+|.+.
T Consensus        33 ~~~gv~V~~V~~~spA~~gL~~GD~I~~vng~~v~~~   69 (95)
T 1mfg_A           33 DDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINI   69 (95)
T ss_dssp             TCCCEEEEEECTTSTTTTTCCTTCEEEEETTEECTTC
T ss_pred             CCCCEEEEEECCCCchhhCCCCCCEEEEECCEEcCCC
Confidence            3679999999999999999999999999999999884

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.04  E-value=3e-06  Score=68.58  Aligned_cols=43  Identities=30%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .+++.+.|.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR   85 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            6999999999999998 8 99999999999999998  888888884

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=2.8e-06  Score=68.89  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.+ |.+.+..
T Consensus        35 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~   79 (100)
T 2eeh_A           35 GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT-MGSAVKV   79 (100)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCC-HHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHh
Confidence            46999999999999998 89999999999999999975 5555543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.04  E-value=2.5e-06  Score=68.42  Aligned_cols=43  Identities=16%  Similarity=0.326  Sum_probs=39.4

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. ||++||+|++|||.+|.+  .+++.+.+.
T Consensus        30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (96)
T 2v90_A           30 PGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQ   75 (96)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3899999999999998 899999999999999999  688888774

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.02  E-value=6.2e-06  Score=66.07  Aligned_cols=44  Identities=23%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.++. +.+..
T Consensus        28 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~-~~~~~   72 (93)
T 2dls_A           28 DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL-EVVKL   72 (93)
T ss_dssp             SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHH-HHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH-HHHHh
Confidence            67999999999999998 8999999999999999997554 55543

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.02  E-value=6.3e-06  Score=66.84  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=38.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.  ++..+.+.
T Consensus        29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (102)
T 2d90_A           29 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR   75 (102)
T ss_dssp             SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46999999999999999 8999999999999999984  56666664

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.02  E-value=3.6e-06  Score=69.56  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=41.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.+++.+.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~   78 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVL   78 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHH
T ss_pred             CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHh
Confidence            68999999999999997 999999999999999999999988883

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.02  E-value=1.8e-06  Score=68.74  Aligned_cols=44  Identities=18%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.  +.+++.+.|.
T Consensus        26 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (91)
T 2vsp_A           26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ   72 (91)
T ss_dssp             CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36899999999999998 89999999999999999  8888888874

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.01  E-value=2.8e-06  Score=67.68  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      |++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.|..
T Consensus        30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~   75 (95)
T 3r68_A           30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK   75 (95)
T ss_dssp             SEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            999999999999999 9999999999999999998  888888853

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.00  E-value=4.2e-06  Score=64.17  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. + |++||+|++|||.+|.  +.++..+.+.
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   67 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE   67 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            6899999999999987 8 9999999999999999  8888887774

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.00  E-value=3.5e-06  Score=68.37  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh--hHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ--DWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~--dW~~cL   54 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.+  ++.+.+
T Consensus        44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l   89 (104)
T 3sfj_A           44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL   89 (104)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            78999999999999998 99999999999999998765  555555

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.00  E-value=3.9e-06  Score=67.26  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .+++.+.+..
T Consensus        31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (97)
T 2jil_A           31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ   79 (97)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45899999999999998 8 99999999999999999  8888888853

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=97.99  E-value=5e-06  Score=65.86  Aligned_cols=43  Identities=23%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.+.
T Consensus        27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR   72 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5999999999999998 899999999999999998  455555553

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.99  E-value=3.5e-06  Score=71.17  Aligned_cols=43  Identities=19%  Similarity=0.399  Sum_probs=40.4

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.+++.+.|.
T Consensus        48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~   92 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLT   92 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            7999999999999998 8 99999999999999999888888884

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.99  E-value=7.2e-06  Score=70.42  Aligned_cols=50  Identities=28%  Similarity=0.335  Sum_probs=42.2

Q ss_pred             ccceeeCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181            6 FPFYKQCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus         6 sP~Y~~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+......|++|.+|.++|||+..|++||+|++|||.+|.+.+++.+.+.
T Consensus        18 ~~~~~~~~gv~V~~V~~~spA~~aL~~GD~Il~InG~~v~~~~dl~~~l~   67 (125)
T 2hga_A           18 YFQGHQPDGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALK   67 (125)
T ss_dssp             -----CCCCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHHHHHHHHT
T ss_pred             ccccCCCCceEEEEECCCChHHHhcCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            33444578999999999999987899999999999999999999999884

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=97.99  E-value=7.4e-06  Score=66.85  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      ..|++|..|.++|||+++|++||+|++|||.+|.+.++....+
T Consensus        38 ~~gv~V~~V~~~spA~agl~~GD~I~~vng~~v~~~~~~~~~~   80 (107)
T 2h2b_A           38 ETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQ   80 (107)
T ss_dssp             CCCEEEEEECTTSTTBTTBCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCEEEEEECCCCchhhCCCCCCEEEEECCEECCCccHHHHHH
Confidence            4699999999999999889999999999999999987766555

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=97.98  E-value=4.4e-06  Score=67.23  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+  .+++.+.|..
T Consensus        36 ~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~   83 (96)
T 2ego_A           36 EMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA   83 (96)
T ss_dssp             CEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35899999999999998 899999999999999999  5888888753

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.98  E-value=2.6e-06  Score=68.28  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.+.
T Consensus        29 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (94)
T 1vb7_A           29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR   75 (94)
T ss_dssp             TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35899999999999998 8999999999999999997  88887774

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=97.97  E-value=5.2e-06  Score=65.61  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=39.9

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.  +.+++.+.+.
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   69 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE   69 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            6999999999999997 8 9999999999999999  8888888774

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=97.97  E-value=6.1e-06  Score=68.49  Aligned_cols=44  Identities=20%  Similarity=0.433  Sum_probs=39.1

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.+.
T Consensus        37 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (114)
T 2edz_A           37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR   83 (114)
T ss_dssp             CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            47999999999999999 8999999999999999984  66766663

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=97.97  E-value=3.8e-06  Score=67.16  Aligned_cols=41  Identities=17%  Similarity=0.385  Sum_probs=37.4

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWM   51 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~   51 (417)
                      .+.|++|..|.++|||+. ||++||+|++|||.+|.+.++..
T Consensus        32 ~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~   73 (97)
T 2w4f_A           32 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE   73 (97)
T ss_dssp             TBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHH
Confidence            368999999999999998 89999999999999999977654

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=97.96  E-value=4.8e-06  Score=65.01  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.  ++..+.+
T Consensus        22 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l   67 (83)
T 2kv8_A           22 QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI   67 (83)
T ss_dssp             SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            66899999999999998 8999999999999999987  6666666

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.96  E-value=3.5e-06  Score=68.67  Aligned_cols=44  Identities=20%  Similarity=0.447  Sum_probs=39.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh--hHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ--DWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~--dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.+  ++.+.+.
T Consensus        25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   71 (106)
T 3ngh_A           25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR   71 (106)
T ss_dssp             CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45899999999999988 89999999999999999876  7777774

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=97.94  E-value=4.8e-06  Score=65.56  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.  ++..+.+.
T Consensus        26 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~   72 (88)
T 2uzc_A           26 NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIK   72 (88)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45899999999999998 8999999999999999987  56665553

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=97.94  E-value=7.6e-06  Score=66.49  Aligned_cols=44  Identities=27%  Similarity=0.419  Sum_probs=37.7

Q ss_pred             eCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .+.|++|..|.++|||+++|++||+|++|||.+|.+.  ++....+
T Consensus        41 ~~~gv~V~~V~~~spA~~gL~~GD~I~~vng~~v~~~~~~~~~~~~   86 (103)
T 1n7t_A           41 DDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             SCCSEECCCBSSSSTTSSSCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            4679999999999999999999999999999999874  3444444

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=97.93  E-value=6e-06  Score=66.52  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      |++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.+.
T Consensus        35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   79 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL   79 (99)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            889999999999998 89999999999999999  6777777774

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=97.93  E-value=1.3e-05  Score=63.27  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..| ++|||+++|++||+|++|||.+|.+.  ++..+.+.
T Consensus        27 ~~~~v~~v-~~spA~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   70 (88)
T 3bpu_A           27 GGQRVKQI-VDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLV   70 (88)
T ss_dssp             SSEEEEEC-CC--CCTTCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CcEEEEEe-cCChhHhCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            58888887 99999989999999999999999986  66666663

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.93  E-value=6.9e-06  Score=67.10  Aligned_cols=45  Identities=16%  Similarity=0.258  Sum_probs=40.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.|..
T Consensus        40 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~   87 (104)
T 1wi2_A           40 QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT   87 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            36899999999999997 999999999999999999  7777777753

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=97.92  E-value=8.4e-06  Score=64.40  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.  +.++..+.+..
T Consensus        26 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2q9v_A           26 GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQ   74 (90)
T ss_dssp             TSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            36899999999999998 8 9999999999999995  46666666643

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.92  E-value=6e-06  Score=67.34  Aligned_cols=43  Identities=23%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. +|++||+|++|||.+|.+  .+++.+.|.
T Consensus        29 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   74 (103)
T 1v5l_A           29 QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK   74 (103)
T ss_dssp             EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHT
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999997 999999999999999999  888888884

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=97.92  E-value=5.4e-06  Score=70.63  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=40.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.|.
T Consensus        50 ~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~   96 (124)
T 3tsv_A           50 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL   96 (124)
T ss_dssp             TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46999999999999997 8999999999999999998  88888885

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=97.90  E-value=8.3e-06  Score=69.37  Aligned_cols=45  Identities=29%  Similarity=0.483  Sum_probs=40.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus        58 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  106 (123)
T 2iwq_A           58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK  106 (123)
T ss_dssp             CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            46999999999999998 8 99999999999999998  8888888753

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=97.90  E-value=7.1e-06  Score=65.83  Aligned_cols=43  Identities=28%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.  +++.+.+.
T Consensus        37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A           37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            4899999999999998 8 999999999999999996  77777774

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=97.89  E-value=9.2e-06  Score=63.53  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        24 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   71 (85)
T 2i04_A           24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ   71 (85)
T ss_dssp             TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35699999999999988 8 99999999999999994  577777774

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=97.89  E-value=8.5e-06  Score=66.96  Aligned_cols=43  Identities=12%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+.  ++..+.+.
T Consensus        45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (109)
T 1q3o_A           45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR   90 (109)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999998 8999999999999999998  77777774

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=97.88  E-value=8.7e-06  Score=70.72  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+  .++..+.|
T Consensus        63 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l  108 (139)
T 2vz5_A           63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL  108 (139)
T ss_dssp             CCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            57999999999999998 999999999999999994  67777777

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=97.88  E-value=6.1e-06  Score=64.40  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. +|++||+|++|||.+|.+.  ++..+.+
T Consensus        24 ~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~   69 (85)
T 1rgw_A           24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKI   69 (85)
T ss_dssp             TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            35899999999999987 8999999999999999987  4444444

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=97.87  E-value=7.8e-06  Score=67.39  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .+++.+.+.
T Consensus        35 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~   82 (97)
T 2ejy_A           35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK   82 (97)
T ss_dssp             TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46999999999999998 8 99999999999999996  788888875

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.86  E-value=1.7e-05  Score=64.71  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=39.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus        33 ~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~   81 (103)
T 1uep_A           33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHH   81 (103)
T ss_dssp             TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            46899999999999998 7 99999999999999976  6677766643

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.86  E-value=8.5e-06  Score=66.54  Aligned_cols=43  Identities=16%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   83 (105)
T 1wha_A           37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            57999999999999988 8 99999999999999998  55555555

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.85  E-value=8.2e-06  Score=66.05  Aligned_cols=44  Identities=20%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. +|++||+|++|||.+|.+.++ .+.+..
T Consensus        34 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~-~~~~~~   78 (101)
T 1uez_A           34 GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTH-AEAVKA   78 (101)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCH-HHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCH-HHHHHh
Confidence            46999999999999998 899999999999999999877 555543

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=1.2e-05  Score=64.41  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec-CChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI-HNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V-~~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. + |++||+|++|||.+| .+.+++.+.|.
T Consensus        28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v~~~~~~~~~~l~   74 (91)
T 2e7k_A           28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLR   74 (91)
T ss_dssp             SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCHHHHHHHHH
Confidence            57999999999999997 5 999999999999999 77888888774

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=97.85  E-value=1.2e-05  Score=64.13  Aligned_cols=44  Identities=16%  Similarity=0.085  Sum_probs=38.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.+.
T Consensus        23 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   69 (91)
T 2f5y_A           23 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIR   69 (91)
T ss_dssp             SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            67899999999999998 999999999999999996  456665553

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=97.85  E-value=9.7e-06  Score=64.04  Aligned_cols=43  Identities=12%  Similarity=0.069  Sum_probs=36.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.  ++..+.+
T Consensus        26 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~   71 (89)
T 2q3g_A           26 NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKI   71 (89)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999998 8999999999999999964  4444444

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=6.8e-06  Score=66.45  Aligned_cols=44  Identities=20%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+++|++||+|++|||.+|.+. +|.+++..
T Consensus        30 ~~~~~V~~V~~~spA~agL~~GD~Il~ing~~v~~~-~~~~~~~~   73 (96)
T 2edv_A           30 SLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDL-SWERAVDI   73 (96)
T ss_dssp             SSSCBCCCBCSSSSSTTTSCTTCBEEEESSCBSTTC-CHHHHHHH
T ss_pred             CCCeEEEEECCCCchhhCCCCCCEEEEECCEECCCC-CHHHHHHH
Confidence            568999999999999889999999999999999875 45555543

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.83  E-value=8.3e-06  Score=67.02  Aligned_cols=40  Identities=18%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             eCCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhH
Q 042181           11 QCEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDW   50 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW   50 (417)
                      ...|++|..|.++|||+. ||++||+|++|||.+|.+.++.
T Consensus        44 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~   84 (110)
T 1x5q_A           44 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH   84 (110)
T ss_dssp             TCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH
Confidence            368999999999999998 8999999999999999986543

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=97.83  E-value=2.3e-05  Score=63.82  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             ceEEEEeCCCCCCCC--CCCCCCeEEeeCCeec--CChhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHI--HNEQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V--~~~~dW~~cL~~   56 (417)
                      |++|..|.++|||+.  +|++||+|++|||.+|  .+.++..+.|..
T Consensus        38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~   84 (101)
T 2yt7_A           38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRE   84 (101)
T ss_dssp             CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            699999999999996  6999999999999999  778888888854

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=97.82  E-value=9.4e-06  Score=64.25  Aligned_cols=43  Identities=16%  Similarity=0.161  Sum_probs=36.3

Q ss_pred             CCceEEEEeCCCCCCC--CCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLS--GYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~--ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+  |+|++||+|++|||.+|.+. +|.+.+.
T Consensus        29 ~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~-~~~~~~~   73 (90)
T 1qav_A           29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA-THDEAVQ   73 (90)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTC-CHHHHHH
T ss_pred             CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCC-CHHHHHH
Confidence            3689999999999999  48999999999999999875 3444443

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=97.82  E-value=1.4e-05  Score=67.15  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=40.2

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .+++.+.|.
T Consensus        33 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~   78 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIR   78 (128)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999998 899999999999999999  888888884

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=97.82  E-value=1.3e-05  Score=64.88  Aligned_cols=43  Identities=9%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   79 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEAL   79 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56999999999999997 8 99999999999999987  44444444

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=97.81  E-value=1.6e-05  Score=63.14  Aligned_cols=43  Identities=7%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.+
T Consensus        32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   78 (94)
T 2fe5_A           32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASL   78 (94)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46999999999999987 7 999999999999999884  4455444

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=97.81  E-value=9.7e-06  Score=66.08  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.|..
T Consensus        47 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           47 EMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            36999999999999998 89999999999999999  77888888753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=97.81  E-value=1.2e-05  Score=65.72  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        43 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45999999999999987 8 99999999999999998  566666664

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.80  E-value=9.2e-06  Score=64.30  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~   48 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.+
T Consensus        31 ~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~   68 (91)
T 1m5z_A           31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFD   68 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC
Confidence            36999999999999997 99999999999999999854

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.80  E-value=1.2e-05  Score=65.43  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=38.7

Q ss_pred             eEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           15 TMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        15 v~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .+|.+|.++|||+. ||++||+|++|||.+|.+.+|+.+.|..
T Consensus         4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d~~~~l~~   46 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVD   46 (95)
T ss_dssp             CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHHHHHHHHH
T ss_pred             CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHH
Confidence            36899999999998 9999999999999999999999998853

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.79  E-value=1.1e-05  Score=68.43  Aligned_cols=44  Identities=20%  Similarity=0.355  Sum_probs=41.3

Q ss_pred             CCceEEEEeCC--CCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPS--TSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~--~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.+  +|||+. ||++||+|++|||.+|.+.  +++.+.|.
T Consensus        43 ~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~   91 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIK   91 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHH
T ss_pred             CCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHH
Confidence            47999999999  999998 8999999999999999998  99999885

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.78  E-value=1.1e-05  Score=67.22  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.++....+
T Consensus        41 ~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~   84 (117)
T 1uit_A           41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARL   84 (117)
T ss_dssp             TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            47999999999999998 99999999999999999987776655

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=97.77  E-value=1.7e-05  Score=63.39  Aligned_cols=43  Identities=16%  Similarity=0.305  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.+
T Consensus        32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   78 (96)
T 1d5g_A           32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   78 (96)
T ss_dssp             SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            36999999999999987 8 999999999999999954  5555555

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=97.77  E-value=1.9e-05  Score=65.30  Aligned_cols=45  Identities=16%  Similarity=0.332  Sum_probs=39.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   80 (108)
T 3cbz_A           32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRD   80 (108)
T ss_dssp             CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            47899999999999997 8 99999999999999999  6666666643

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=97.77  E-value=1.7e-05  Score=62.85  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=36.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+.  ++....+
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   74 (92)
T 2qg1_A           28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL   74 (92)
T ss_dssp             SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35999999999999988 8 999999999999999874  4444444

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.77  E-value=3.1e-05  Score=63.95  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhh--HHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQD--WMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~d--W~~cL   54 (417)
                      ..|++|..|.++|||+. +|++||+|++|||.+|.+.++  +.+.+
T Consensus        40 ~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~   85 (114)
T 1x5n_A           40 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVL   85 (114)
T ss_dssp             SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46999999999999998 899999999999999998754  55555

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=97.76  E-value=1.6e-05  Score=62.40  Aligned_cols=43  Identities=16%  Similarity=0.436  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCC--CCCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLS--GYLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~--ggL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+  ++|++||+|++|||.+|.+.  +++.+.+
T Consensus        27 ~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~   73 (87)
T 4e34_A           27 GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL   73 (87)
T ss_dssp             TEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3579999999999999  58999999999999999765  5555555

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=97.76  E-value=2.3e-05  Score=62.51  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec--CChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI--HNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V--~~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|  .+.++..+.|.
T Consensus        27 ~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   74 (93)
T 3o46_A           27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA   74 (93)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            47899999999999998 7 999999999999999  67777777774

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.76  E-value=2.1e-05  Score=65.37  Aligned_cols=44  Identities=14%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             CCceEEEEeCCCCCCCC-CC-CCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YL-SPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL-~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. || ++||+|++|||.+|.  +.+++.+.|.
T Consensus        47 ~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~   94 (113)
T 1va8_A           47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS   94 (113)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57999999999999998 88 999999999999999  5667777774

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=97.76  E-value=2.1e-05  Score=64.61  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             CceEEEEeCCCCCCCC-CC-CCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YL-SPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL-~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. || ++||+|++|||.+|.+  .+++.+.+.
T Consensus        26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR   72 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999998 87 9999999999999999  888888884

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=97.75  E-value=2e-05  Score=62.80  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec--CChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI--HNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V--~~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|  .+.++..+.+.
T Consensus        20 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~   67 (88)
T 3e17_A           20 GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIE   67 (88)
T ss_dssp             EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45899999999999998 7 999999999999999  56677777774

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.75  E-value=3.1e-05  Score=64.32  Aligned_cols=42  Identities=26%  Similarity=0.480  Sum_probs=36.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.. |.+.+.
T Consensus        50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~   93 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS-HSEAVE   93 (117)
T ss_dssp             CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC-HHHHHH
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHH
Confidence            6999999999999999 8 9999999999999998754 444443

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=97.75  E-value=1.9e-05  Score=64.78  Aligned_cols=43  Identities=12%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR   85 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            6899999999999998 8 99999999999999976  467776664

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.75  E-value=1.7e-05  Score=67.10  Aligned_cols=45  Identities=29%  Similarity=0.346  Sum_probs=41.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus        45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   93 (129)
T 2dmz_A           45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN   93 (129)
T ss_dssp             CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            47999999999999997 8 99999999999999999  8888888853

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.74  E-value=2e-05  Score=66.41  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=39.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.  +.++..+.|.
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   90 (123)
T 1ueq_A           43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ   90 (123)
T ss_dssp             SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46799999999999997 7 9999999999999999  5677777774

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=97.74  E-value=1.3e-05  Score=63.95  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~   47 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+.
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~   65 (95)
T 2vwr_A           28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYG   65 (95)
T ss_dssp             SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred             CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence            45999999999999988 7 999999999999999875

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.74  E-value=1.3e-05  Score=65.93  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=38.2

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|+.|..+.|+||++. ||++||+|++|||.+|.+.+|+.+.+..
T Consensus        37 ~G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~   81 (105)
T 2i4s_A           37 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQS   81 (105)
T ss_dssp             EEEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHh
Confidence            3677777777777787 9999999999999999999999988854

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=97.73  E-value=1.9e-05  Score=64.47  Aligned_cols=43  Identities=12%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +.|++|.+|.++|||+. | |++||+|++|||.+|.+. +|.+.+.
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~-~~~~~~~   76 (105)
T 2awx_A           32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEV-THEEAVT   76 (105)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC-BHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC-CHHHHHH
Confidence            35999999999999988 8 999999999999999874 3444443

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=97.73  E-value=2.1e-05  Score=65.14  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.+.
T Consensus        35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~   80 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS   80 (94)
T ss_dssp             CEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            4899999999999998 999999999999999995  566666663

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=97.73  E-value=2.8e-05  Score=65.58  Aligned_cols=45  Identities=16%  Similarity=0.033  Sum_probs=40.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      +.+.+|.+|.++|||+. ||++||+|++|||.+|.  +.+|+.+.+.+
T Consensus        38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~   85 (101)
T 3qik_A           38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQ   85 (101)
T ss_dssp             TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHH
Confidence            67889999999999999 99999999999999984  77788777754

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=97.72  E-value=1.4e-05  Score=66.34  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=38.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC---ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH---NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~---~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.   +.++..+.+.
T Consensus        48 ~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~   96 (117)
T 2o2t_A           48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ   96 (117)
T ss_dssp             CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            35899999999999998 8 9999999999999998   6666666663

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=1.2e-05  Score=64.46  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~   47 (417)
                      ..|++|..|.++|||+. +|++||+|++|||.+|.+.
T Consensus        31 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~   67 (94)
T 2eeg_A           31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM   67 (94)
T ss_dssp             TSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence            46899999999999997 8999999999999999985

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=97.72  E-value=2.5e-05  Score=62.61  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=33.6

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~   48 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.+
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~   67 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT   67 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC
Confidence            5999999999999997 8 9999999999999999853

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=97.72  E-value=3.3e-05  Score=68.82  Aligned_cols=44  Identities=27%  Similarity=0.432  Sum_probs=38.6

Q ss_pred             eCCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+.|++|..|.++|||+++|++||+|++|||.+|.+.. +.+.+.
T Consensus        22 ~~~g~~V~~v~~~spA~~gl~~GD~I~~vng~~v~~~~-~~~~~~   65 (195)
T 2qbw_A           22 DDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIE-HGQAVS   65 (195)
T ss_dssp             TCCSEEEEEECTTSTTTTTCCTTCEEEEETTEECTTCC-HHHHHH
T ss_pred             CCCCEEEEEECCCChHHhCCCCCCEEEEECCEECCCCC-HHHHHH
Confidence            36799999999999999999999999999999999865 555553

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.71  E-value=1.9e-05  Score=66.74  Aligned_cols=44  Identities=27%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.++ .+.+..
T Consensus        45 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~-~~~~~~   89 (128)
T 1uf1_A           45 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILH-DEAVRL   89 (128)
T ss_dssp             TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCH-HHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCH-HHHHHH
Confidence            35999999999999998 999999999999999999765 555543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=97.71  E-value=2.3e-05  Score=62.95  Aligned_cols=42  Identities=7%  Similarity=0.168  Sum_probs=37.0

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   75 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLL   75 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            6999999999999998 8 99999999999999986  45555555

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=97.71  E-value=2.3e-05  Score=65.89  Aligned_cols=44  Identities=18%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.+.
T Consensus        43 ~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~   89 (109)
T 2vsv_A           43 NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLK   89 (109)
T ss_dssp             SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            56889999999999998 99999999999999999  6678877774

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=97.71  E-value=2e-05  Score=66.32  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=37.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.  +.++..+.+.
T Consensus        52 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   99 (117)
T 2fne_A           52 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK   99 (117)
T ss_dssp             EEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35899999999999987 7 9999999999999999  5555555553

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.71  E-value=2.3e-05  Score=64.16  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.  +.++....+.
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   88 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR   88 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            47999999999999998 8 9999999999999999  4555555553

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=97.70  E-value=2.6e-05  Score=62.94  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.+
T Consensus        36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   82 (101)
T 2jik_A           36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF   82 (101)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46999999999999997 8 999999999999999885  4444444

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=97.69  E-value=3e-05  Score=65.43  Aligned_cols=43  Identities=12%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~  104 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR  104 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence            6899999999999998 8 99999999999999998  466666664

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=97.69  E-value=2.7e-05  Score=65.23  Aligned_cols=43  Identities=16%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec--CChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI--HNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V--~~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|  .+.++..+.+.
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~   96 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ   96 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4799999999999998 8 999999999999999  67777777664

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=2.9e-05  Score=61.50  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. + |++||+|++|||.+|.+  .++..+.+
T Consensus        29 ~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~   75 (93)
T 2dkr_A           29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELL   75 (93)
T ss_dssp             SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            47999999999999996 5 99999999999999996  35555555

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.69  E-value=2.5e-05  Score=65.77  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=40.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.+++|..|.++|||+. + |++||+|++|||.+|.+  .+++.+.|..
T Consensus        44 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            35789999999999998 8 99999999999999988  8899888854

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=97.69  E-value=1.8e-05  Score=63.87  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=33.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~   47 (417)
                      ..|++|.+|.++|||+. | |++||+|++|||.+|.+.
T Consensus        30 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~   67 (96)
T 2qkv_A           30 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL   67 (96)
T ss_dssp             SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTC
T ss_pred             CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCC
Confidence            57999999999999998 8 999999999999999874

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=97.69  E-value=2.7e-05  Score=62.03  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             CceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      .|++|..|.++|||+.  +|++||.|++|||.+|.  +.+++.+.|..
T Consensus        25 ~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~   72 (88)
T 1kwa_A           25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            5799999999999997  69999999999999999  77888877743

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=97.68  E-value=1.8e-05  Score=65.67  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~   48 (417)
                      ..|++|.+|.++|||+. | |++||+|++|||.+|.+..
T Consensus        24 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~   62 (106)
T 2la8_A           24 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP   62 (106)
T ss_dssp             SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence            57999999999999998 8 9999999999999998743

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=2.7e-05  Score=63.21  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. + |++||+|++|||.+|.+.  ++..+.+
T Consensus        37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   83 (104)
T 2djt_A           37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI   83 (104)
T ss_dssp             ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            47899999999999998 8 999999999999999984  4444444

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.68  E-value=3e-05  Score=62.54  Aligned_cols=42  Identities=10%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .| +|..|.++|||+. ||++||+|++|||.+|.  +.+++.+.+.
T Consensus        32 ~G-~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~   76 (90)
T 1y7n_A           32 NG-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS   76 (90)
T ss_dssp             TT-EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CC-EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35 8999999999998 99999999999999995  6778877774

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=97.67  E-value=3.4e-05  Score=64.82  Aligned_cols=43  Identities=9%  Similarity=0.166  Sum_probs=37.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.  +.++..+.+
T Consensus        53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   99 (117)
T 2byg_A           53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL   99 (117)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999998 8 9999999999999999  455555555

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=97.67  E-value=3.2e-05  Score=62.50  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=35.7

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.  ++....+
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   80 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3999999999999998 8 999999999999999663  4444444

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.67  E-value=3.3e-05  Score=63.46  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=38.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        37 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   84 (111)
T 2dlu_A           37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR   84 (111)
T ss_dssp             SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36999999999999998 8 99999999999999985  466666664

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.65  E-value=4.1e-05  Score=63.76  Aligned_cols=42  Identities=21%  Similarity=0.280  Sum_probs=35.4

Q ss_pred             CceEEEEeCCCCCCCC---CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG---YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g---gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .|++|..|.++|||+.   +|++||+|++|||.+|.+.  ++..+.+
T Consensus        41 ~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~   87 (119)
T 2cs5_A           41 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI   87 (119)
T ss_dssp             EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHH
T ss_pred             CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3799999999999987   8999999999999999874  3344444

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.65  E-value=5.2e-05  Score=73.52  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||++ ||++||+|++|||.+|.+.+++.+.|.
T Consensus       243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~  287 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVA  287 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHH
T ss_pred             CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            57999999999999999 899999999999999999999998884

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.65  E-value=3.3e-05  Score=68.00  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=39.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .+++.+.|.
T Consensus       129 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  176 (196)
T 3gsl_A          129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK  176 (196)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHH
Confidence            46899999999999988 7 99999999999999998  666666663

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.64  E-value=1.5e-05  Score=63.11  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=38.2

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .++|.+|.++|||+. ||++||+|++|||.+|.+.+++.+.+.
T Consensus         5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~   47 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVR   47 (91)
T ss_dssp             -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHHHHHHHH
T ss_pred             CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHHHHHHHh
Confidence            367889999999987 999999999999999999999998885

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=97.64  E-value=3e-05  Score=64.31  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=35.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+. +|.+.+
T Consensus        48 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~-~~~~~~   91 (112)
T 2r4h_A           48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNM-KHSRAI   91 (112)
T ss_dssp             TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTC-CHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC-CHHHHH
Confidence            46899999999999998 8 999999999999999875 334433

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.63  E-value=5.6e-05  Score=62.62  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             ceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +++|..|.++|||+.  +|++||+|++|||.+|.+  .+++.+.|..
T Consensus        44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~   90 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD   90 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            679999999999997  899999999999999999  4888888853

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.63  E-value=2.5e-05  Score=65.43  Aligned_cols=45  Identities=20%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.|..
T Consensus        35 ~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~   82 (111)
T 1vae_A           35 NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKS   82 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56889999999999998 89999999999999999  78888877753

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.63  E-value=2.4e-05  Score=65.10  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=36.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.++|||+++|++||+|++|||.+|.+.  ++....+
T Consensus        45 ~~gv~V~~V~~~spA~~gL~~GD~I~~Vng~~v~~~~~~~~~~~l   89 (117)
T 2csj_A           45 ETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQL   89 (117)
T ss_dssp             CCBCEEEEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCcccccCCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            458999999999999889999999999999999874  3444444

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=3.5e-05  Score=64.39  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=37.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChh--hHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQ--DWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~--dW~~cL   54 (417)
                      +.|++|..|.++|||+. + |++||+|++|||.+|.+.+  +....+
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~   92 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF   92 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56999999999999997 7 9999999999999999854  555544

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.62  E-value=1.9e-05  Score=64.20  Aligned_cols=44  Identities=16%  Similarity=0.085  Sum_probs=38.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.+.
T Consensus        35 ~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~   81 (100)
T 1whd_A           35 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIR   81 (100)
T ss_dssp             SSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999998 999999999999999995  577776664

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=97.61  E-value=4.4e-05  Score=62.85  Aligned_cols=43  Identities=9%  Similarity=0.180  Sum_probs=36.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++....+
T Consensus        31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   77 (106)
T 4amh_A           31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTAL   77 (106)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45999999999999988 8 99999999999999977  34444444

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.61  E-value=2.2e-05  Score=63.86  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~   47 (417)
                      +.+++|..|.++|||+. ||++||+|++|||.+|.+.
T Consensus        28 ~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~   64 (103)
T 1wf7_A           28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGM   64 (103)
T ss_dssp             TEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence            34689999999999998 8999999999999999986

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=97.61  E-value=2.5e-05  Score=65.07  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=37.2

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+.
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   88 (119)
T 1x6d_A           42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR   88 (119)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5899999999999998 8 99999999999999984  555555553

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=97.60  E-value=4.3e-05  Score=60.56  Aligned_cols=36  Identities=22%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~   47 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+.
T Consensus        32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~   69 (97)
T 2iwn_A           32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF   69 (97)
T ss_dssp             CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTS
T ss_pred             CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCC
Confidence            46999999999999998 8 999999999999999975

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.60  E-value=3.6e-05  Score=75.13  Aligned_cols=44  Identities=30%  Similarity=0.432  Sum_probs=41.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||++ ||++||+|++|||.+|.+.+|+.+.+.
T Consensus       255 ~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~l~~~l~  299 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVR  299 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHT
T ss_pred             CCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHh
Confidence            47999999999999998 999999999999999999999999884

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=97.60  E-value=6.9e-05  Score=64.40  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+  .++..+.+.
T Consensus        65 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~  110 (132)
T 3l4f_D           65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR  110 (132)
T ss_dssp             CSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3899999999999998 999999999999999985  555666653

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.59  E-value=4.2e-05  Score=62.75  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=35.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+. +|.+..
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~-~~~~~~   78 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGL-GYLRAV   78 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSC-CHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC-CHHHHH
Confidence            46899999999999998 8 999999999999999863 344444

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=1.2e-05  Score=68.07  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=40.1

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.|.
T Consensus        60 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~  106 (126)
T 2yuy_A           60 MDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ  106 (126)
T ss_dssp             CCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36899999999999998 89999999999999998  7888888774

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=97.58  E-value=4.3e-05  Score=62.32  Aligned_cols=42  Identities=24%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+. +|.++.
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~-~~~~~~   80 (106)
T 3axa_A           37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGL-SQERAA   80 (106)
T ss_dssp             SEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTC-CHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC-CHHHHH
Confidence            45899999999999998 8 999999999999999863 234443

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=3.6e-05  Score=65.06  Aligned_cols=42  Identities=19%  Similarity=0.109  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.+
T Consensus        44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l   88 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFL   88 (114)
T ss_dssp             EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHH
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHH
Confidence            5899999999999998 9999999999999999984  4555555

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=97.56  E-value=5.3e-05  Score=64.14  Aligned_cols=43  Identities=16%  Similarity=0.363  Sum_probs=38.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.  +.++..+.+.
T Consensus        53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   99 (118)
T 3b76_A           53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK   99 (118)
T ss_dssp             CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4799999999999998 8 9999999999999999  6777777764

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.56  E-value=2.1e-05  Score=64.80  Aligned_cols=43  Identities=14%  Similarity=0.181  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   89 (111)
T 1uju_A           43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56899999999999988 8 99999999999999995  44444444

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.55  E-value=4.2e-05  Score=62.59  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  ..+....+
T Consensus        39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   85 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVL   85 (107)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999998 8 99999999999999986  44444555

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.54  E-value=9.5e-05  Score=71.64  Aligned_cols=44  Identities=14%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||++ ||++||+|++|||.+|.+.+++.+.+.
T Consensus       241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~l~~~l~  285 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVR  285 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHHHHHHHH
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            57999999999999999 899999999999999999999988884

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=97.54  E-value=4.8e-05  Score=62.70  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~   48 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+.+
T Consensus        34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~   72 (113)
T 2g5m_B           34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT   72 (113)
T ss_dssp             CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            46999999999999998 8 9999999999999998743

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.54  E-value=3.2e-05  Score=63.95  Aligned_cols=42  Identities=17%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   88 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITAL   88 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHH
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            5999999999999998 8 99999999999999998  45555555

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.53  E-value=4.4e-05  Score=75.55  Aligned_cols=44  Identities=25%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||++ ||++||+|++|||.+|.+.+|+.+.+.
T Consensus       262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~l~~~l~  306 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIA  306 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHHHHHHHH
T ss_pred             CceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            48999999999999998 999999999999999999999999885

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=97.52  E-value=5.7e-05  Score=64.14  Aligned_cols=44  Identities=11%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec--CChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI--HNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V--~~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|  .+.++..+.+.
T Consensus        64 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~  111 (128)
T 1nf3_C           64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI  111 (128)
T ss_dssp             EEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35899999999999998 8 999999999999999  55777777764

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=97.52  E-value=3.8e-05  Score=62.80  Aligned_cols=43  Identities=16%  Similarity=0.404  Sum_probs=36.3

Q ss_pred             CceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|..|.++|||+.  +|++||+|++|||.+|.+. +|.++...
T Consensus        35 ~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~-~~~~~~~~   79 (103)
T 2dc2_A           35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT-KHKEAVTI   79 (103)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTS-CHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCC-CHHHHHHH
Confidence            4899999999999996  8999999999999999874 45555433

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=97.52  E-value=4.6e-05  Score=63.34  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=34.4

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChhh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQD   49 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~d   49 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.++
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   76 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            6999999999999998 8 99999999999999998654

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=97.51  E-value=4.5e-05  Score=64.46  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC---ChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH---NEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~---~~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.   +.++..+.|.
T Consensus        54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            3899999999999987 8 9999999999999998   5555555553

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.51  E-value=4.2e-05  Score=62.23  Aligned_cols=43  Identities=12%  Similarity=0.261  Sum_probs=36.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.  ++....+
T Consensus        31 ~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~   76 (106)
T 2eei_A           31 KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKV   76 (106)
T ss_dssp             CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999998 9999999999999999853  4444444

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.51  E-value=3.2e-05  Score=62.39  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=36.0

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.+
T Consensus        36 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   81 (103)
T 1wfv_A           36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI   81 (103)
T ss_dssp             EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3899999999999998 8 999999999999999984  4444444

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.51  E-value=5.6e-05  Score=63.24  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             ceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeec--CChhhHHHHHH
Q 042181           14 GTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHI--HNEQDWMEVAA   55 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V--~~~~dW~~cL~   55 (417)
                      |++|..|.++|||+. | |++||+|++|||.+|  .+.++..+.|.
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~   88 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            499999999999998 8 999999999999999  55777777774

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=97.50  E-value=8.2e-05  Score=62.58  Aligned_cols=44  Identities=18%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.  +.+++.+.+.
T Consensus        44 ~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   91 (125)
T 3hpk_A           44 CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ   91 (125)
T ss_dssp             CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35799999999999998 8 9999999999999998  4566777664

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=97.48  E-value=5.9e-05  Score=66.19  Aligned_cols=43  Identities=23%  Similarity=0.194  Sum_probs=39.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhh-HHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQD-WMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~d-W~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.++ ....+
T Consensus        26 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~   70 (166)
T 1w9e_A           26 DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKV   70 (166)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            68999999999999998 999999999999999999877 65555

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=97.48  E-value=6.6e-05  Score=61.16  Aligned_cols=43  Identities=21%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCCCCC-C--CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y--LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g--L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+. |  |++||+|++|||.+|.+.  +++...+.
T Consensus        43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~   90 (107)
T 3nfk_A           43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK   90 (107)
T ss_dssp             EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5799999999999998 8  999999999999999964  45555553

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.47  E-value=4e-05  Score=64.53  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             CceEEEEeCCCCCCCC-CC-CCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YL-SPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL-~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. || ++||+|++|||.+|.+  .+++.+.+.
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~   79 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR   79 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHH
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3899999999999998 87 9999999999999999  888888874

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=97.46  E-value=8.8e-05  Score=63.26  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+.  +|++||+|++|||.+|.+. +|.++...
T Consensus        56 ~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~-~~~~~~~~  101 (130)
T 1i16_A           56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGL-TRFEAWNI  101 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGS-CHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC-CHHHHHHH
Confidence            35799999999999995  8999999999999999884 34555443

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.46  E-value=7.7e-05  Score=64.46  Aligned_cols=45  Identities=13%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             eCCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      .+.+++|..|.++|||+. | |++||+|++|||.+|.  +.+++.+.|.
T Consensus        47 ~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~   95 (126)
T 1wif_A           47 NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQ   95 (126)
T ss_dssp             ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHT
T ss_pred             CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence            367899999999999988 7 9999999999999996  6777877773

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.45  E-value=7e-05  Score=63.03  Aligned_cols=35  Identities=11%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~   47 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~   87 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR   87 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence            5999999999999998 7 999999999999999874

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=97.44  E-value=9.2e-05  Score=62.95  Aligned_cols=44  Identities=18%  Similarity=0.199  Sum_probs=38.1

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~   90 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS   90 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4699999999999998 7 99999999999999985  4677777743

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=97.43  E-value=8.3e-05  Score=63.70  Aligned_cols=43  Identities=16%  Similarity=0.260  Sum_probs=38.2

Q ss_pred             ceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      |++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.|..
T Consensus        66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~  112 (131)
T 1wfg_A           66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILE  112 (131)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            899999999999998 8 999999999999999874  677777743

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.43  E-value=9.1e-05  Score=61.83  Aligned_cols=41  Identities=12%  Similarity=0.266  Sum_probs=35.9

Q ss_pred             ceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           14 GTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      |++|..|.++|||+. + |++||+|++|||.+|.+.  ++..+.|
T Consensus        50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   94 (117)
T 1ujd_A           50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII   94 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            899999999999998 8 999999999999999873  5555555

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.42  E-value=8.2e-05  Score=61.15  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.+
T Consensus        43 ~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   89 (108)
T 2d92_A           43 RSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL   89 (108)
T ss_dssp             CEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999998 7 99999999999999977  44444444

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.42  E-value=7.9e-05  Score=66.97  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .+++.+.|.+
T Consensus       134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~  182 (196)
T 1p1d_A          134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ  182 (196)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            47999999999999997 7 99999999999999999  8999998854

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=97.41  E-value=7e-05  Score=67.69  Aligned_cols=43  Identities=19%  Similarity=0.299  Sum_probs=38.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+  .+++.+.+
T Consensus       109 ~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l  154 (192)
T 3k1r_A          109 GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLI  154 (192)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45899999999999998 899999999999999998  77777766

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.41  E-value=5.3e-05  Score=69.47  Aligned_cols=44  Identities=34%  Similarity=0.434  Sum_probs=39.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCC-CeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPG-DVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~G-DvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++| |+|++|||.+|.+.++....+.
T Consensus        15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~   60 (209)
T 3rle_A           15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLL   60 (209)
T ss_dssp             SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHH
Confidence            57899999999999998 99999 9999999999999888766664

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.41  E-value=0.00011  Score=60.13  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      +.|++|..|.++|||+.  +|++||+|++|||.+|.+. +|.+++
T Consensus        40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~-~~~~~~   83 (107)
T 1uhp_A           40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA-THDQAV   83 (107)
T ss_dssp             SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTC-CHHHHH
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCC-CHHHHH
Confidence            67999999999999986  7999999999999999763 344444

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=97.38  E-value=0.00012  Score=62.30  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|.
T Consensus        55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  101 (127)
T 1wg6_A           55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR  101 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4899999999999998 7 99999999999999988  346666664

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.35  E-value=0.00012  Score=60.63  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||.|++|||.++.+  .++..+.|.
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~   87 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT   87 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4799999999999998 8 99999999999999998  556666664

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.35  E-value=5.4e-05  Score=61.43  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~   47 (417)
                      +.|++|..|.++|||+.  +|++||+|++|||.+|.+.
T Consensus        34 ~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~   71 (100)
T 2edp_A           34 CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS   71 (100)
T ss_dssp             TEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch
Confidence            35799999999999996  7999999999999999984

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=97.33  E-value=9.3e-05  Score=62.48  Aligned_cols=42  Identities=17%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      +.|++|..|.++|||+.  +|++||+|++|||.+|.+. +|.++.
T Consensus        52 ~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~-~~~~~~   95 (120)
T 2iwo_A           52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGM-THTQAV   95 (120)
T ss_dssp             EEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTC-BHHHHH
T ss_pred             CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCC-CHHHHH
Confidence            34899999999999984  8999999999999999884 344444

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=97.31  E-value=0.00014  Score=65.23  Aligned_cols=44  Identities=18%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. | |++||+|++|||.+|.+.  +++.+.+.
T Consensus       135 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~  182 (206)
T 3r0h_A          135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK  182 (206)
T ss_dssp             SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46899999999999997 7 999999999999999964  56666663

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=97.29  E-value=9.3e-05  Score=65.10  Aligned_cols=37  Identities=8%  Similarity=0.127  Sum_probs=34.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~~   48 (417)
                      +.|++|..|.|+|||+. | |++||+|++|||.+|.+.+
T Consensus        34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~   72 (196)
T 3gsl_A           34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT   72 (196)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence            56999999999999987 7 9999999999999999753

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=96.39  E-value=3.7e-05  Score=64.43  Aligned_cols=42  Identities=14%  Similarity=0.406  Sum_probs=35.4

Q ss_pred             CceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      .|++|..|.++|||+.  +|++||+|++|||.+|.+  .++..+.+
T Consensus        53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l   98 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL   98 (112)
Confidence            5899999999999996  899999999999999965  44444444

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.28  E-value=0.00016  Score=64.81  Aligned_cols=44  Identities=23%  Similarity=0.412  Sum_probs=40.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecC--ChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIH--NEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~--~~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.  +.+++.+.|.
T Consensus       134 ~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~  181 (200)
T 2qt5_A          134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK  181 (200)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36999999999999998 8 9999999999999999  8899988885

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.26  E-value=0.00019  Score=72.90  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. ||++||+|++|||.+|.+.+|+.+.+.
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~  406 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLA  406 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            5999999999999987 899999999999999999999999985

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.25  E-value=6.8e-05  Score=61.39  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. + |++||+|++|||.+|.+.  ++....+
T Consensus        38 ~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~   84 (113)
T 1um7_A           38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL   84 (113)
T ss_dssp             TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            36899999999999998 7 999999999999999986  3444433

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00011  Score=72.41  Aligned_cols=43  Identities=33%  Similarity=0.629  Sum_probs=41.0

Q ss_pred             CceEEEEeCCCCCCCC-CCCC-----------CCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSP-----------GDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~-----------GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|.+|.++|||+. ||++           ||+|++|||.+|.+.+|+.+.|.
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~  305 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILD  305 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHT
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHHHHHHHH
Confidence            7999999999999998 9999           99999999999999999999984

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=97.24  E-value=0.00019  Score=64.31  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN   46 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~   46 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~   80 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHV   80 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCG
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCC
Confidence            6999999999999987 6 99999999999999998

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.24  E-value=0.00012  Score=67.19  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=40.6

Q ss_pred             CceEEEEeCCCCCCCC-CCCC-CCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSP-GDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~-GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|.+|.++|||+. ||++ ||+|++|||. |.+.+++.+.+..
T Consensus       112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~  156 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIET  156 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHH
T ss_pred             cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHh
Confidence            7999999999999998 9999 9999999997 9999999999964

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.23  E-value=0.00023  Score=72.38  Aligned_cols=44  Identities=25%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.+++...+.
T Consensus       262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~  306 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIA  306 (436)
T ss_pred             CcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            48999999999999998 899999999999999999999998885

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.19  E-value=0.00046  Score=55.78  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|+.|.+. ++.++|++||+|++|||.+|.+.  ++..+.|.
T Consensus        31 ~~Gv~V~~v~~~-a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~   75 (96)
T 1ujv_A           31 PTGQRVKQILDI-QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILK   75 (96)
T ss_dssp             TTEEEEEEESCG-GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEEecc-cccCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            458999999984 55669999999999999999885  66666664

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.18  E-value=0.00017  Score=73.82  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .|++|++|.++|||+. ||++||+|++|||.+|.+.+|+.+.|.
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~  429 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQ  429 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTT
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHh
Confidence            5999999999999988 999999999999999999999999884

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.16  E-value=0.00023  Score=72.93  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=41.7

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .|++|.+|.++|||++ ||++||+|++|||.+|.+.++....+..
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~  326 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISL  326 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHT
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh
Confidence            7999999999999998 9999999999999999999999998853

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=97.14  E-value=0.00014  Score=68.08  Aligned_cols=43  Identities=23%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecC--ChhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIH--NEQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~--~~~dW~~cL~~   56 (417)
                      |++|..|.++|||+. ||++||+|++|||.+|.  +.++..+.|..
T Consensus        34 gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~   79 (216)
T 2krg_A           34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (216)
T ss_dssp             SCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            899999999999998 99999999999999999  88888888753

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=97.12  E-value=0.00025  Score=63.65  Aligned_cols=44  Identities=16%  Similarity=0.281  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|.
T Consensus        35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   82 (196)
T 1p1d_A           35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   82 (196)
T ss_dssp             SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            35799999999999997 8 99999999999999994  577777774

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.10  E-value=7.6e-05  Score=72.80  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=0.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||++ ||++||+|++|||.+|.+.+|+.+.+.
T Consensus       253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~  297 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK  297 (332)
T ss_dssp             ---------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHHHHHHHh
Confidence            57999999999999998 899999999999999999888888773

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=97.07  E-value=0.00035  Score=62.65  Aligned_cols=44  Identities=16%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+.  +|++||+|++|||.+|.+.  ++....+.
T Consensus        32 ~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (200)
T 2qt5_A           32 DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK   79 (200)
T ss_dssp             SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46799999999999994  8999999999999999987  77776663

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=97.01  E-value=0.00045  Score=62.17  Aligned_cols=44  Identities=18%  Similarity=0.177  Sum_probs=37.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|.
T Consensus       110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~  157 (170)
T 3egg_C          110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR  157 (170)
T ss_dssp             SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36899999999999998 8 99999999999999965  455555553

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.00  E-value=0.00048  Score=57.71  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=36.9

Q ss_pred             ceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      .++|..|.++|||+.  +|++||.|++|||.+|.+  .++..+.|..
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~   90 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK   90 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence            399999999999985  899999999999999997  4566666643

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=96.99  E-value=0.00034  Score=74.31  Aligned_cols=43  Identities=28%  Similarity=0.326  Sum_probs=39.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +.|++|.+|.++|||.+ ||++||+|++|||.+| +.+++.+.+.
T Consensus       495 ~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~~~~l~~~l~  538 (597)
T 4fgm_A          495 PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-TEQSVKRILE  538 (597)
T ss_dssp             TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-CTTTHHHHHT
T ss_pred             CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-CHHHHHHHHH
Confidence            66999999999999999 9999999999999999 5888998884

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.91  E-value=0.00049  Score=69.45  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+  .++....|.
T Consensus        30 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~   76 (391)
T 3tsz_A           30 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL   76 (391)
T ss_dssp             TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            47999999999999998 899999999999999987  666666664

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.87  E-value=0.00038  Score=71.20  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.++....+.
T Consensus       285 ~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~  329 (448)
T 1ky9_A          285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG  329 (448)
T ss_dssp             CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTT
T ss_pred             CCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH
Confidence            47999999999999998 999999999999999999999888874

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.82  E-value=0.001  Score=70.21  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=42.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      .+||+|++|.++|++.+ ++.+||+|++|||.+|+|.+|+.+.|.+
T Consensus       414 ~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~  459 (539)
T 4fln_A          414 EQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDM  459 (539)
T ss_dssp             CCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHT
T ss_pred             ceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHHHHHHHHH
Confidence            56999999999999999 8999999999999999999999999964

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=96.79  E-value=0.00057  Score=56.13  Aligned_cols=42  Identities=14%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             eEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           15 TMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        15 v~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ++|..|.++|||+. + |++||.|++|||.++.+  .++..+.|.+
T Consensus        34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   79 (103)
T 1ufx_A           34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE   79 (103)
T ss_dssp             CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred             EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence            58999999999998 7 99999999999999987  5556665643

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=96.72  E-value=0.00089  Score=66.79  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=38.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. ||++||+|++|||.+|.+.  +++.+.+
T Consensus        98 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l  143 (388)
T 1fc6_A           98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL  143 (388)
T ss_dssp             SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            47999999999999998 9999999999999999984  6676655

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.62  E-value=0.001  Score=70.22  Aligned_cols=38  Identities=45%  Similarity=0.564  Sum_probs=35.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQD   49 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~d   49 (417)
                      ..|++|.+|.++|||+++|++||+|++|||.+|.+..+
T Consensus       276 ~~Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~~~g~  313 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEGT  313 (539)
T ss_dssp             SBCEEEEEECTTSGGGGTCCTTCEEEEETTEECBSSSE
T ss_pred             cCceeeecccCCChHHhCccCCCEEEEECCEEeCcCCe
Confidence            57999999999999999999999999999999987544

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=96.61  E-value=0.0011  Score=68.72  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+  .++....|..
T Consensus        22 ~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~   69 (468)
T 3shw_A           22 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLD   69 (468)
T ss_dssp             TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            47999999999999998 899999999999999998  7777777753

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.50  E-value=0.00042  Score=70.91  Aligned_cols=44  Identities=25%  Similarity=0.361  Sum_probs=0.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.+++.+.|.
T Consensus       382 ~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~  426 (448)
T 1ky9_A          382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLD  426 (448)
T ss_dssp             ---------------------------------------------
T ss_pred             CCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            57899999999999998 999999999999999999999988874

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=96.47  E-value=0.0014  Score=63.29  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=37.3

Q ss_pred             CceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+.  +|++||+|++|||.+|.+.  ++..+.|.
T Consensus       103 ~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~  149 (263)
T 1z87_A          103 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK  149 (263)
T ss_dssp             EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            5899999999999996  8999999999999999984  55555553

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=96.38  E-value=0.0016  Score=52.26  Aligned_cols=41  Identities=12%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      .|. |..|.++|||+. ||++||.|++|||..|.+.  ++-.+.|
T Consensus        24 ~g~-I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~ll   67 (82)
T 1r6j_A           24 NGK-ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADIL   67 (82)
T ss_dssp             TTE-EEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCE-EEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            354 789999999999 9999999999999999764  3444444

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=96.26  E-value=0.0035  Score=67.61  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. | |++||+|++|||.+|.+  .++..+.|..
T Consensus       330 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~  378 (721)
T 2xkx_A          330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN  378 (721)
T ss_pred             CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            36999999999999987 7 99999999999999998  6777777743

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=96.09  E-value=0.0023  Score=55.96  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh
Q 042181           13 EGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~   48 (417)
                      .| +|..|.++|||+. ||++||+|++|||.+|.+..
T Consensus       108 ~g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~  143 (166)
T 1w9e_A          108 NG-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLK  143 (166)
T ss_dssp             TT-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCC
T ss_pred             CC-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCC
Confidence            45 8999999999998 89999999999999998853

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=95.91  E-value=0.0028  Score=64.36  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             ceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh
Q 042181           14 GTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~   48 (417)
                      .++|..|.++|||+. ||++||+|++|||.+|.+.+
T Consensus        91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~  126 (403)
T 3k50_A           91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV  126 (403)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT
T ss_pred             eEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh
Confidence            489999999999999 99999999999999998763

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.79  E-value=0.0073  Score=65.10  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||+|++|||.+|.+.  ++....+.
T Consensus       183 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  230 (721)
T 2xkx_A          183 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK  230 (721)
T ss_pred             CCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Confidence            46999999999999998 8 999999999999999985  45555553

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=95.70  E-value=0.0024  Score=64.11  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|..|.++|||+. | |++||+|++|||.+|.+.  ++..+.+.
T Consensus       232 ~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~  278 (388)
T 3suz_A          232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK  278 (388)
T ss_dssp             CCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred             CCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            3589999999999998 7 999999999999999876  67777663

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=94.73  E-value=0.0053  Score=61.55  Aligned_cols=41  Identities=7%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             eEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           15 TMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        15 v~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .+|.+|.++|||+. ||++||+|++|||.+|.+  .+++.+.|.
T Consensus       317 g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~  360 (388)
T 3suz_A          317 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALS  360 (388)
T ss_dssp             --------------------------------------------
T ss_pred             CEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            37889999999988 899999999999999975  466666663

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=94.50  E-value=0.059  Score=45.77  Aligned_cols=44  Identities=20%  Similarity=0.177  Sum_probs=34.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      ..|..|..|.+. ...++|++||+|++|||.+|.+.  ++..+.|..
T Consensus        33 ~~g~~V~~I~~~-~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~   78 (113)
T 3soe_A           33 PTGQKVKMILDS-QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQ   78 (113)
T ss_dssp             TTEEEEEEESCG-GGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEecCh-HHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            457788888872 23349999999999999999964  577777754

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=94.34  E-value=0.022  Score=47.27  Aligned_cols=43  Identities=16%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             ceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      .+.|..|.++||++.  .|.+||.|.+|||..|.+  .++-.+.|.+
T Consensus        29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~   75 (95)
T 3gge_A           29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKE   75 (95)
T ss_dssp             CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            367999999999987  599999999999999976  5677777754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=94.24  E-value=0.037  Score=60.43  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=39.4

Q ss_pred             eCCceEEEEeCCC--------CCCCC-C--CCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           11 QCEGTMVLDVPST--------SPLSG-Y--LSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~--------SPl~g-g--L~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+.|++|..|.++        |||+. |  |+ ||+|++|||.+|.+..+..+.|.
T Consensus       746 ~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~~~~~~~  800 (1045)
T 1k32_A          746 DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSNIYRVLS  800 (1045)
T ss_dssp             ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTBCHHHHHH
T ss_pred             eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchhhHHHhhc
Confidence            3789999999998        99998 8  99 99999999999999888877774

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=93.98  E-value=0.044  Score=51.46  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHccccccccchHHHHHHHHHH
Q 042181          259 KSLICIFHVSLTLALLNSLPAYFLDGESIFEVTLCF  294 (417)
Q Consensus       259 ~fl~YL~slSlALAllN~LPcy~LDGq~IL~tlL~~  294 (417)
                      .++.++..+.+.+|++|++|++-|||.+|+++++..
T Consensus       124 ~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          124 PLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             EHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            356778889999999999999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.45
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.4
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.38
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.37
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.31
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.26
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.94
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.93
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	97.76
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	97.58
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	97.57
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.55
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	97.47
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	97.45
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.43
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	97.42
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	97.4
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	97.38
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	97.36
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	97.35
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	97.35
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	97.33
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	97.33
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.33
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	97.32
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	97.31
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	97.26
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	97.26
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	97.2
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	97.2
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	97.19
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.18
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	97.16
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.15
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	97.14
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	97.11
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	97.11
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.1
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	97.1
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	97.1
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	97.09
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	97.08
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	97.07
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	97.01
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	96.98
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	96.97
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	96.97
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	96.96
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	96.95
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	96.95
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	96.93
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	96.93
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	96.93
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	96.88
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	96.88
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	96.84
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	96.76
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	96.68
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	96.64
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	96.44
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	96.28
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	88.14

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=9e-08  Score=77.88  Aligned_cols=44  Identities=30%  Similarity=0.396  Sum_probs=41.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      .+|++|.+|.++|||+++|++||+|++|||.+|.+.+|+...+.
T Consensus         2 p~Gv~V~~V~~~sPA~~~L~~GD~I~~ing~~v~~~~~l~~~i~   45 (103)
T d2hgaa1           2 PDGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALK   45 (103)
T ss_dssp             CCCEEEEEECSSSGGGGTSCTTCEEEEETTEECSSHHHHHHHHT
T ss_pred             CCcEEEEEECCCChHHhcCCCCCEEEEECCEEcCCHHHHHHHHh
Confidence            47999999999999999999999999999999999999999984

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=1.7e-07  Score=73.60  Aligned_cols=44  Identities=14%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|.+|.|+|||+. ||++||+|++|||.+|.+.+++...+.
T Consensus        15 ~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~~~~~~i~   59 (88)
T d2z9ia1          15 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVR   59 (88)
T ss_dssp             CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHHHHHHHHH
T ss_pred             CCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHHHHHHHHH
Confidence            56999999999999998 999999999999999999999998884

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-07  Score=76.06  Aligned_cols=43  Identities=30%  Similarity=0.447  Sum_probs=41.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.+|+.+.+
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s~~dl~~~l   73 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV   73 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHH
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCCHHHHHHHh
Confidence            67999999999999998 99999999999999999999999888

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=7.6e-08  Score=75.94  Aligned_cols=44  Identities=25%  Similarity=0.361  Sum_probs=41.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|++|.|+|||+. ||++||+|++|||.+|++.+++.+.+.
T Consensus        24 ~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~~~~~l~   68 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLD   68 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSSHHHHHHHTT
T ss_pred             CCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCCHHHHHHHHH
Confidence            78999999999999997 999999999999999999999998884

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.1e-07  Score=75.83  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..|++|++|.++|||+. ||++||+|++|||.+|.+.+++.+.+.
T Consensus        26 ~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~~l~~~l~   70 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVG   70 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTT
T ss_pred             CCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHHHHHHHHH
Confidence            57999999999999998 899999999999999999999999884

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.7e-07  Score=75.45  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=41.2

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~   56 (417)
                      ..|++|.+|.++|||+. ||++||+|++|||.+|.+.+++.+.+.+
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~l~~   70 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAE   70 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCSHHHHHHHHH
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccHHHHHHHHHc
Confidence            58999999999999998 8999999999999999999999999954

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.94  E-value=1.8e-06  Score=68.02  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             cccceee--CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHHhh
Q 042181            5 LFPFYKQ--CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAALL   57 (417)
Q Consensus         5 LsP~Y~~--g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~~~   57 (417)
                      +.|.+..  -.|..|..+.++||++. ||++||+|++|||.+|++.+++.+.+...
T Consensus         9 ~~pv~~~~~~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~~~~~~~~~~   64 (87)
T d2i6va1           9 LSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSM   64 (87)
T ss_dssp             EEEEEETTEEEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTG
T ss_pred             eEEeccCCeEEEEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHHHHHHHHHhh
Confidence            4566663  66999999999999987 99999999999999999999999999653

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.93  E-value=3.3e-06  Score=66.89  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~   47 (417)
                      +.+++|++|.++|||+. ||++||+|++|||.++.+.
T Consensus        18 ~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~   54 (92)
T d1fc6a3          18 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGM   54 (92)
T ss_dssp             SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTC
T ss_pred             CceEEEEEecCCCChhHHhhHcCCcceecCceEcCCC
Confidence            56899999999999998 8999999999999999953

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.1e-06  Score=63.27  Aligned_cols=44  Identities=25%  Similarity=0.255  Sum_probs=39.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|.+|.++|||+. ||++||.|++|||.+|.+  .++..+.|.
T Consensus        24 ~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk   70 (85)
T d1w9ea1          24 DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK   70 (85)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHh
Confidence            78999999999999997 899999999999999996  577777774

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.76  E-value=1.3e-05  Score=63.72  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             eeCCceEEEEeCCC--------CCCCC-CC-CCCCeEEeeCCeecCChhhHHHHHH
Q 042181           10 KQCEGTMVLDVPST--------SPLSG-YL-SPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        10 ~~g~Gv~V~~V~~~--------SPl~g-gL-~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      ..+++++|..|.++        |||+. || ++||+|++|||.+|.+.+++.+.|.
T Consensus         9 ~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~~~~~~l~   64 (91)
T d1k32a1           9 LDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLS   64 (91)
T ss_dssp             EETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTBCHHHHHH
T ss_pred             EECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcceeEEEEe
Confidence            45899999999987        99998 88 8999999999999999999999884

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.7e-05  Score=62.94  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.|+|||++.|++||.|++|||..+.+.  ++-.+.|.
T Consensus        42 ~~gI~I~~V~~gs~A~~~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          42 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             CCSEEEEEECTTSTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCChHHhccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            568999999999999999999999999999999975  45556664

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=2.2e-05  Score=62.78  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=39.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      ..++.|..|.++|||+. ||++||.|++|||.+|.+.  ++..+.|++
T Consensus        42 ~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv~~ik~   89 (104)
T d1q3oa_          42 PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ   89 (104)
T ss_dssp             CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHHHHHHc
Confidence            45789999999999997 9999999999999999997  677777753

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.5e-05  Score=61.24  Aligned_cols=43  Identities=16%  Similarity=0.081  Sum_probs=37.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.++.|..|.++|||+. ||++||+|++|||.+|.+.  ++-.+.+
T Consensus        17 ~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i   62 (77)
T d2f5ya1          17 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI   62 (77)
T ss_dssp             SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            77899999999999997 9999999999999999975  4444555

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.8e-05  Score=62.91  Aligned_cols=43  Identities=19%  Similarity=0.404  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh--hHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ--DWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~--dW~~cL   54 (417)
                      +.|++|.+|.++|||+. ||++||.|++|||..|.+.+  +-.+.|
T Consensus        38 ~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (97)
T d1x5qa1          38 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL   83 (97)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56899999999999997 89999999999999999864  333444

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=2.7e-05  Score=61.46  Aligned_cols=43  Identities=14%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh--hHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ--DWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~--dW~~cL   54 (417)
                      ..|++|+.|.++|||+. +|++||.|++|||.+|.+..  +-.+.|
T Consensus        31 ~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l   76 (91)
T d1m5za_          31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLI   76 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56999999999999976 89999999999999998754  344444

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.2e-05  Score=62.31  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~ggL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+++|++||.|.+|||.+|.+.  ++..+.|.
T Consensus        38 ~~~i~V~~v~~gs~A~~~L~~GD~Il~INg~~v~~~~~~ev~~ll~   83 (104)
T d2csja1          38 ETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLR   83 (104)
T ss_dssp             CCBCEEEEECTTSSHHHHBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChhhcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            568999999999999999999999999999999964  67777774

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.9e-05  Score=63.71  Aligned_cols=43  Identities=19%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCChhhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNEQDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~~dW~~cL   54 (417)
                      +.|++|..|.|+|||+.  .|++||.|++|||..|.+.++....|
T Consensus        47 ~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~~~~~l   91 (124)
T d1wh1a_          47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALL   91 (124)
T ss_dssp             CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHH
T ss_pred             CCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHHHHHHHH
Confidence            46899999999999985  59999999999999999887776665

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7e-05  Score=60.33  Aligned_cols=43  Identities=26%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.++|||+. +|++||.|++|||.+|.+.  ++-.+.|
T Consensus        33 ~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~l   78 (101)
T d1x5na1          33 KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVL   78 (101)
T ss_dssp             SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHH
T ss_pred             CCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHH
Confidence            45899999999999996 8999999999999999974  4444544

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.9e-05  Score=60.15  Aligned_cols=44  Identities=30%  Similarity=0.510  Sum_probs=36.1

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||.|++|||..+.+  .++-.+.|.
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk   82 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR   82 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46899999999999987 5 99999999999999997  466666664

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.6e-05  Score=60.72  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQ   48 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~   48 (417)
                      +.|++|..|.++|||+. +|++||.|++|||.+|.+..
T Consensus        24 ~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s   61 (85)
T d1rgwa_          24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT   61 (85)
T ss_dssp             TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCC
T ss_pred             CCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCC
Confidence            46789999999999986 89999999999999999753

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=6.8e-05  Score=60.37  Aligned_cols=45  Identities=13%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|.+|.++|||+. | |++||.|++|||..+.+  .++..+.|..
T Consensus        25 ~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~   73 (112)
T d1qaua_          25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG   73 (112)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHc
Confidence            45899999999999998 7 99999999999999996  4677777753

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=3.8e-05  Score=61.89  Aligned_cols=43  Identities=16%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. +|++||.|++|||..|.+.  ++-.+.|
T Consensus        40 ~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~ll   85 (104)
T d1wi2a_          40 QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEIL   85 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHH
Confidence            46899999999999997 8999999999999999985  3444444

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.5e-05  Score=60.33  Aligned_cols=44  Identities=25%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. ||++||+|++|||.+|.+.  ++-.+.|.
T Consensus        26 ~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~   72 (91)
T d1g9oa_          26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR   72 (91)
T ss_dssp             CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45899999999999997 8999999999999999864  56777774

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=8e-05  Score=58.98  Aligned_cols=44  Identities=14%  Similarity=0.296  Sum_probs=36.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. | |++||.|++|||.+|.+  .++-.+.|.
T Consensus        36 ~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk   83 (99)
T d1ozia_          36 HGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR   83 (99)
T ss_dssp             CCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHH
Confidence            45899999999999987 5 99999999999999996  445555554

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=3e-05  Score=60.99  Aligned_cols=43  Identities=9%  Similarity=0.113  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.++|||+. | |++||.|++|||..|.+.  ++-.+.|
T Consensus        30 ~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l   76 (93)
T d1rgra_          30 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL   76 (93)
T ss_dssp             CCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHH
Confidence            56999999999999997 6 999999999999999984  4444444

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=4.2e-05  Score=62.51  Aligned_cols=45  Identities=20%  Similarity=0.119  Sum_probs=39.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      +.+++|..|.++|||+. +|++||.|++|||.+|.+.  ++-.+.|..
T Consensus        35 ~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~   82 (111)
T d1vaea_          35 NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKS   82 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHc
Confidence            67899999999999986 8999999999999999974  667777743

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.4e-05  Score=62.91  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. +|++||.|++|||..|.+.  ++..+.|.
T Consensus        45 ~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          45 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHT
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            45899999999999997 8999999999999999974  67777773

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.32  E-value=7.9e-05  Score=58.58  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=37.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.|+|||+. + |++||.|++|||..|.+  .++-.+.|.
T Consensus        34 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~   81 (94)
T d1ihja_          34 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   81 (94)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHH
Confidence            45799999999999997 5 99999999999999996  556666664

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=2.9e-05  Score=61.61  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.+++|..|.|+|||+. +|++||+|++|||.+|.+.  ++-.+.|.
T Consensus        29 ~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~   75 (94)
T d1vb7a_          29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR   75 (94)
T ss_dssp             TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45789999999999986 8999999999999999985  34555553

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.26  E-value=4.7e-05  Score=60.84  Aligned_cols=44  Identities=11%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|.+|.|+|||+. | |++||.|++|||.+|.+.  ++-.+.|.
T Consensus        37 ~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~   84 (98)
T d1rzxa_          37 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV   84 (98)
T ss_dssp             EEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHH
Confidence            55899999999999996 5 999999999999999864  45555553

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=6.7e-05  Score=58.99  Aligned_cols=43  Identities=7%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.|+|||+. + |++||.|++|||..+.+.  ++-.+.|
T Consensus        30 ~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~l   76 (92)
T d2fe5a1          30 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASL   76 (92)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred             CCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHH
Confidence            57899999999999997 5 999999999999999974  3444455

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=5.3e-05  Score=59.81  Aligned_cols=44  Identities=23%  Similarity=0.200  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|.+|.++|||+. | |++||.|++|||..+.+  .++-.+.|.
T Consensus        32 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1          32 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45789999999999987 5 99999999999999997  344555553

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9.8e-05  Score=57.72  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. | |++||.|.+|||.+|.+  .++..+.|.+
T Consensus        24 ~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~   72 (88)
T d1kwaa_          24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            56899999999999987 6 99999999999999984  6777777754

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=5.8e-05  Score=59.42  Aligned_cols=43  Identities=23%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.|+|||+. | |++||.|++|||.+|.+.  ++-.+.|
T Consensus        30 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l   76 (92)
T d1t2ma1          30 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM   76 (92)
T ss_dssp             SCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHH
Confidence            34899999999999987 5 999999999999999974  4555555

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0002  Score=57.41  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=38.4

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.+++|..|.++|||+. + |++||.|++|||.+|.+  .++-.+.|.+
T Consensus        33 ~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~   81 (103)
T d1uepa_          33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHH   81 (103)
T ss_dssp             TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45689999999999997 5 99999999999999997  4567777743

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00021  Score=57.60  Aligned_cols=45  Identities=20%  Similarity=0.250  Sum_probs=38.5

Q ss_pred             CCceEEEEeCCCCCCC---CCCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLS---GYLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~---ggL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+   |+|++||.|++|||.+|.+  .++..+.|..
T Consensus        33 ~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~   82 (106)
T d2cs5a1          33 KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   82 (106)
T ss_dssp             TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4579999999999995   3799999999999999997  4677777754

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.19  E-value=8.6e-05  Score=58.59  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|.+|.|+|||+. | |++||.|++|||.++.+  .++-.+.|.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk   75 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLR   75 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHH
Confidence            5899999999999997 5 99999999999999997  344455553

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=7.6e-05  Score=60.29  Aligned_cols=44  Identities=20%  Similarity=0.322  Sum_probs=36.8

Q ss_pred             eCCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ...|++|..|.|+|||+. + |++||.|++|||.+|.+.  ++-.+.|
T Consensus        39 ~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_          39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            367899999999999976 4 999999999999999974  4444444

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=6.7e-05  Score=59.09  Aligned_cols=43  Identities=14%  Similarity=0.174  Sum_probs=36.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.|+|||+. + |++||.|++|||.++.+.  ++-.+.|
T Consensus        29 ~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l   75 (90)
T d1qava_          29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL   75 (90)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHH
Confidence            56899999999999997 5 999999999999999974  4444444

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=9e-05  Score=59.74  Aligned_cols=43  Identities=16%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.|+|||+. + |++||.|++|||.+|.+.  ++-.+.|
T Consensus        37 ~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l   83 (105)
T d1whaa_          37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHH
Confidence            56899999999999997 5 999999999999999974  4555555

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=8e-05  Score=61.14  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE   47 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~   47 (417)
                      +.|++|..|.++|||+. +|++||.|++|||.+|.+.
T Consensus        41 ~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~   77 (117)
T d1uita_          41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA   77 (117)
T ss_dssp             TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTC
T ss_pred             CCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCC
Confidence            56999999999999987 8999999999999999973

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=9.5e-05  Score=59.54  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. | |++||.|++|||..|.+.  ++-.+.|
T Consensus        32 ~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l   78 (102)
T d1tp5a1          32 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   78 (102)
T ss_dssp             GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHH
Confidence            56999999999999987 6 999999999999999984  4555555

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=8.9e-05  Score=58.94  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. | |++||.|++|||..+.+  .++-.+.|.+
T Consensus        33 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~   81 (96)
T d1wi4a1          33 GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   81 (96)
T ss_dssp             CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56899999999999987 5 99999999999999996  4556666643

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00011  Score=59.10  Aligned_cols=43  Identities=19%  Similarity=0.122  Sum_probs=36.7

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      +.|++|..|.++|||+. +|++||.|++|||..|.+.  ++-.+.|
T Consensus        34 ~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll   79 (101)
T d1ueza_          34 GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL   79 (101)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHS
T ss_pred             CCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHH
Confidence            56899999999999986 8999999999999999975  4444444

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=9.3e-05  Score=59.67  Aligned_cols=45  Identities=16%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.++|||+. + |++||.|++|||..|.+  .++..+.|.+
T Consensus        34 ~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~   82 (107)
T d1x6da1          34 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ   82 (107)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHc
Confidence            46899999999999976 5 99999999999999996  4888888854

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00026  Score=57.27  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+.  .|++||.|++|||.+|.+.  ++..+.|.+
T Consensus        42 ~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~   90 (114)
T d1uewa_          42 TVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD   90 (114)
T ss_dssp             CCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHc
Confidence            45799999999999986  4999999999999999964  677777743

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00017  Score=57.26  Aligned_cols=45  Identities=18%  Similarity=0.288  Sum_probs=38.7

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.|+|||+. | |++||.|++|||..|.+  .++-.+.|.+
T Consensus        37 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          37 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHc
Confidence            56899999999999997 5 99999999999999995  5667777643

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00012  Score=57.29  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=37.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~~   56 (417)
                      .|+.|..|.++|||+. + |++||.|++|||.+|.+.  ++-.+.|.+
T Consensus        30 ~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1          30 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             cCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            4789999999999987 5 999999999999999974  666666643

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=55.69  Aligned_cols=41  Identities=7%  Similarity=0.174  Sum_probs=35.7

Q ss_pred             eEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           15 TMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        15 v~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      -+|..|.|+|||+. +|++||.|++|||.++.+.  ++-.+.|.
T Consensus        22 g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~   65 (79)
T d1y7na1          22 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS   65 (79)
T ss_dssp             TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHH
Confidence            37999999999986 9999999999999999974  66677664

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=6.9e-05  Score=60.93  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.|+|||+. + |++||.|++|||..|.+.  ++-.+.|
T Consensus        43 ~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   89 (111)
T d1ujua_          43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHH
Confidence            67899999999999987 5 999999999999999974  4445555

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00023  Score=58.99  Aligned_cols=45  Identities=22%  Similarity=0.253  Sum_probs=40.3

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.|++|..|.+++||+.  .|++||.|++|||..|.+  .++..+.|..
T Consensus        43 ~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~   91 (123)
T d1ueqa_          43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS   91 (123)
T ss_dssp             SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            67899999999999977  499999999999999996  5888888854

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00016  Score=56.45  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=36.5

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      .|++|.+|.|+|||+. | |++||.|.+|||..+.+.  ++-.+.|.
T Consensus        26 ~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~   72 (85)
T d1x45a1          26 PTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK   72 (85)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4799999999999996 5 999999999999999974  45555553

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00032  Score=56.11  Aligned_cols=44  Identities=14%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. + |++||.|.+|||.+|.+  .++..+.|.
T Consensus        40 ~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~   87 (100)
T d1va8a1          40 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS   87 (100)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHH
Confidence            67999999999999986 5 99999999999999995  566777774

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.00017  Score=57.07  Aligned_cols=44  Identities=7%  Similarity=0.183  Sum_probs=37.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      ..|++|..|.++|||+. + |++||.|.+|||..|.+.  ++-.+.|.
T Consensus        27 ~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~   74 (95)
T d1n7ea_          27 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ   74 (95)
T ss_dssp             TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46799999999999987 5 999999999999999964  55666664

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00024  Score=57.56  Aligned_cols=43  Identities=16%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             ceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      |++|.+|.++|||+.  .|++||.|++|||.++.+  .++..+.|.+
T Consensus        48 gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~   94 (108)
T d2cssa1          48 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILE   94 (108)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            899999999999985  499999999999999997  4666666643

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00017  Score=59.27  Aligned_cols=42  Identities=12%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVA   54 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL   54 (417)
                      .|++|..|.++|||+. + |++||.|++|||.+|.+  .++-.+.|
T Consensus        49 ~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i   94 (117)
T d1ujda_          49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII   94 (117)
T ss_dssp             EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHH
Confidence            3799999999999997 6 99999999999999996  34445555

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00017  Score=58.26  Aligned_cols=43  Identities=21%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVA   54 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL   54 (417)
                      ..|++|..|.++|||+. + |++||.|++|||..|.+.  ++-.+.|
T Consensus        35 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~ll   81 (110)
T d1um1a_          35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI   81 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHH
Confidence            34799999999999987 5 999999999999999864  4555555

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00028  Score=57.69  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      ..|++|..|.++|||+.  .|++||.|++|||..|.+  .++..+.|.
T Consensus        41 ~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~   88 (117)
T d1v62a_          41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHH
Confidence            56899999999999996  599999999999999986  566666664

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00028  Score=58.48  Aligned_cols=46  Identities=15%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             CCceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHHhh
Q 042181           12 CEGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAALL   57 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~~~   57 (417)
                      ..|++|..|.|+|||..  .|++||.|++|||.+|.+  .++..+.|.+.
T Consensus        44 ~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            35689999999999985  599999999999999997  77888888653

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00018  Score=58.05  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=36.3

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCChhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNEQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~~dW~~cL~   55 (417)
                      +.+++|..|.++|||+. +|++||.|++|||..|.+.... +++.
T Consensus        28 ~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~-e~v~   71 (103)
T d1v5la_          28 NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA-DAQD   71 (103)
T ss_dssp             TEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHH-HHHH
T ss_pred             CCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHH-HHHH
Confidence            45799999999999987 8999999999999999986533 3443

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00021  Score=59.77  Aligned_cols=45  Identities=13%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             eCCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           11 QCEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        11 ~g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .+.|++|.+|.++|||+. + |++||+|++|||..|.+  .++-.+.|.
T Consensus        47 ~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr   95 (126)
T d1wifa_          47 NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQ   95 (126)
T ss_dssp             ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHT
T ss_pred             cCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHh
Confidence            477899999999999997 6 99999999999999986  456666663

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00016  Score=56.06  Aligned_cols=41  Identities=10%  Similarity=0.132  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           15 TMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        15 v~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      -.|..|.++|||+. ||++||.|++|||.+|.+.  ++-.+.|.
T Consensus        25 g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~   68 (82)
T d1r6ja_          25 GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS   68 (82)
T ss_dssp             TEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHH
Confidence            36999999999998 9999999999999999974  56666664

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00024  Score=57.06  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             CCceEEEEeCCCCCCCC-CCCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-YLSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-gL~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +.+++|..|.+++||+. +|++||.|++|||.+|.+  .++..+.|.+
T Consensus        28 ~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~   75 (103)
T d1wf7a_          28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA   75 (103)
T ss_dssp             TEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            46799999999999985 899999999999999987  4566666643

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00039  Score=57.34  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             ceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           14 GTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        14 Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      +++|..|.++|||+. | |++||.|++|||.+|.+  .++..+.|.+
T Consensus        44 ~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   90 (118)
T d1v6ba_          44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK   90 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHH
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHh
Confidence            799999999999997 5 99999999999999997  5566666654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0004  Score=57.55  Aligned_cols=44  Identities=14%  Similarity=0.195  Sum_probs=37.5

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +.|++|..|.+++||+. | |++||.|++|||..+.+  .++-.++|.
T Consensus        56 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~  103 (130)
T d1i16a_          56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK  103 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHH
Confidence            36899999999999998 5 99999999999999986  455666664

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00036  Score=55.58  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=39.3

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      ..|++|..|.++|||+. + |++||.|++|||.+|.+  .++..+.|..
T Consensus        37 ~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1          37 SSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             SSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            56799999999999976 4 99999999999999997  5678888854

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00025  Score=57.07  Aligned_cols=44  Identities=14%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             CceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCC--hhhHHHHHHh
Q 042181           13 EGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHN--EQDWMEVAAL   56 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~--~~dW~~cL~~   56 (417)
                      .+++|.+|.|+|||+. + |++||.|++|||.+|.+  .++-.+.|.+
T Consensus        32 ~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   79 (103)
T d1ufxa_          32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE   79 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred             CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHH
Confidence            3589999999999986 5 99999999999999996  4556666644

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00063  Score=56.65  Aligned_cols=43  Identities=14%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             CceEEEEeCCCCCCCC--CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           13 EGTMVLDVPSTSPLSG--YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        13 ~Gv~V~~V~~~SPl~g--gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      .|++|..|.|+|||+.  .|++||.|++|||..|.+  .++-.+.|+
T Consensus        55 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr  101 (127)
T d1wg6a_          55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR  101 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHH
Confidence            4789999999999977  499999999999999986  455555554

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.00046  Score=55.41  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCCCCC-C-CCCCCeEEeeCCeecCCh--hhHHHHHH
Q 042181           12 CEGTMVLDVPSTSPLSG-Y-LSPGDVIVSLDGIHIHNE--QDWMEVAA   55 (417)
Q Consensus        12 g~Gv~V~~V~~~SPl~g-g-L~~GDvI~sINgc~V~~~--~dW~~cL~   55 (417)
                      +.|++|..|.++|||+. + |++||.|++|||..|.+.  ++-.+.|.
T Consensus        35 ~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~   82 (103)
T d1wfva_          35 KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK   82 (103)
T ss_dssp             TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHH
Confidence            44899999999999987 5 999999999999999974  55555564

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.17  Score=39.06  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             CCCCCCeEEeeCCeecCC--hhhHHHHHH
Q 042181           29 YLSPGDVIVSLDGIHIHN--EQDWMEVAA   55 (417)
Q Consensus        29 gL~~GDvI~sINgc~V~~--~~dW~~cL~   55 (417)
                      +|++||.|++|||..|.+  .++-.+.|+
T Consensus        47 ~L~~GD~Il~VNg~~v~~~t~~evv~~lk   75 (96)
T d1ujva_          47 GLCEGDLIVEINQQNVQNLSHTEVVDILK   75 (96)
T ss_dssp             TCCSSCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            899999999999999997  355556664