Citrus Sinensis ID: 042184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEccHHccccccccEEEcccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccccccHHHHHHccccccEEEEcccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccEEEEEccccccHHccHHHHHHHHHHHHcccccccccccHHHHHHHHccEEccccccHHHccHHHHHHHHHHHHHHEcccccccccccccccEEcccccccHHHHHcEEEEEcccHHHHHHHHHHHHHHEEEEEccccHHHHHHHHHHcHHHcEEEEEEcccccEEEHHccccccHHHHEEEEcccHHHccHHHHHccccEEEEEEcccccccHHHHHHHcccHHEEEEHHcccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
mntsianfklmkvldledapvvylpegvgSLLNLHYLSLRNKKVKIIPKsignllglesldlkNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAklhpgfgsltNLQKLCIIEADSEVLKELMKLRQLRklsirpqngngkDLCVLIANLENLENLIVLMKSKEEvldlqslsnppqylQRLYfkgdmkklpdwifkpknvirlgldlsgltedpiRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Flexible Loop (DISEMBL)
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLrklsirpqngngkDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Low Complexity Region (SEG)
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCvlianlenlenlivlMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Disordered region (IsUnstruct)
****IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGL***
Disordered Region (DISOPRED)
*NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Disordered Region (DISEMBL)
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Disordered Region (DISPRO)
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLARF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q39214	926	Disease resistance protei	yes	no	0.888	0.250	0.299	5e-24
Q8W3K3	910	Putative disease resistan	no	no	0.865	0.248	0.284	1e-09
Q9C646	899	Probable disease resistan	no	no	0.773	0.224	0.286	5e-09
Q8W474	907	Probable disease resistan	no	no	0.812	0.233	0.292	3e-08
Q6UWE0	723	E3 ubiquitin-protein liga	yes	no	0.425	0.153	0.297	1e-07
Q8W4J9	908	Disease resistance protei	no	no	0.842	0.242	0.289	5e-07
Q80ZI6	727	E3 ubiquitin-protein liga	yes	no	0.291	0.104	0.353	7e-07
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.279	0.039	0.354	1e-06
P0DI18	1049	Probable disease resistan	no	no	0.831	0.206	0.276	1e-06
P0DI17	1049	Probable disease resistan	no	no	0.831	0.206	0.276	1e-06

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 2/234 (0%)

Query: 10  LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE 69
           L++ LDLED+ +  LP+ + ++ NL YL+L   +VK +PK+   L+ LE+L+ K++ + E
Sbjct: 582 LLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEE 641

Query: 70  LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKE 129
           LP+ +  LKKLRYL+ ++      S+       ++ P    L +LQ +    A+ E++K 
Sbjct: 642 LPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDELIKN 701

Query: 130 LMKLRQLRKLS-IRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ 188
           L  + QL ++S +  +  +G+DLC  +  ++ +  L +    +EE L++  L      ++
Sbjct: 702 LGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IE 760

Query: 189 RLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTY 242
           +L+  G ++++P W    +N+  LGL  S L E+ I  +  LP L+ L     Y
Sbjct: 761 KLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAY 814

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 20/246 (8%)

Query: 1   MNTSIANFKLMKVLDLEDAPV--VYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLE 58
           + +S    +L++VLDL  A      LP G+G L++L YL+L   +V  +P S+GNL  L 
Sbjct: 573 LGSSFIRLELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLI 632

Query: 59  SLDLKNTLVREL--PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQK 116
            LD+ N   + L  P  +  + +LRYL            +    + ++  G  +L NL+ 
Sbjct: 633 YLDI-NVCTKSLFVPNCLMGMHELRYL-----------RLPFNTSKEIKLGLCNLVNLET 680

Query: 117 LCIIEADSEVLKELMKLRQLRKLSIR-PQNGNGKDLCVLIANLENLENLIVLM---KSKE 172
           L     ++  L++L  +  LR L+I   ++ + + L   I  + +LENL +      SK 
Sbjct: 681 LENFSTENSSLEDLRGMVSLRTLTIGLFKHISKETLFASILGMRHLENLSIRTPDGSSKF 740

Query: 173 EVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPN 232
           + +    +     +L++L  +  M KLPD    P ++  + LD   L EDP+ +L  L  
Sbjct: 741 KRIMEDGIVLDAIHLKQLNLRLYMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLE 800

Query: 233 LLQLRL 238
           L ++RL
Sbjct: 801 LKEVRL 806

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 21/223 (9%)

Query: 9   KLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL 66
           KL++VLDL  A      LP  +G L++L YLSL++ KV  +P S+ NL+ L  LD++   
Sbjct: 577 KLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDF 636

Query: 67  VR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIE---A 122
               +P     +++LRYL + ++              KL      L+NL+KL  +E    
Sbjct: 637 TDIFVPNVFMGMRELRYLELPRFM---------HEKTKLE-----LSNLEKLEALENFST 682

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLS 181
            S  L++L  + +LR L I    G   + L   +  L +LEN  ++  +    +  + + 
Sbjct: 683 KSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMV 742

Query: 182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPI 224
               YL++L    +M +LP     P ++  L L    L EDP+
Sbjct: 743 LDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPM 785

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 31/243 (12%)

Query: 1   MNTSIANFKLMKVLDL--EDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLE 58
           + TS    KL++VLDL   D   + LP G+G+L++L YLSL++ KV  +P S+GNL+ L 
Sbjct: 576 LGTSFTRLKLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLI 635

Query: 59  SLDLK-NTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
            L+L  +T    +P     + +LRYL            +      K      +L  L+ L
Sbjct: 636 YLNLDVDTEFIFVPDVFMRMHELRYL-----------KLPLHMHKKTRLSLRNLVKLETL 684

Query: 118 CIIEADSEVLKELMKLRQLRKLSIR-PQNGNGKDLCVLIANLENLENLIVL------MKS 170
                     K+L  + +L  L+IR  +  + + L   I+ L NLE L ++      M+ 
Sbjct: 685 VYFSTWHSSSKDLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMRE 744

Query: 171 KEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHAL 230
           +  VLD   L +    L  LY       +P     P  +  + L   GL EDP+ +L  L
Sbjct: 745 EGIVLDFIHLKH---LLLDLY-------MPRQQHFPSRLTFVKLSECGLEEDPMPILEKL 794

Query: 231 PNL 233
            +L
Sbjct: 795 LHL 797

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 27/138 (19%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
           + S+ +   +KVLDL D  +  LP+ +G L  L  L++   ++  +P+SIGNL  L++L+
Sbjct: 74  SCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLN 133

Query: 62  LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAE----------------EAAAKLH 105
           +K+  ++ELP  +  L+ LR L +      SG+ I                  +A+A ++
Sbjct: 134 VKDNKLKELPDTVGELRSLRTLNI------SGNEIQRLPQMLAHVRTLEMLSLDASAMVY 187

Query: 106 P-----GFGSLTNLQKLC 118
           P     G G+   LQ LC
Sbjct: 188 PPREVCGAGTAAILQFLC 205

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 22/242 (9%)

Query: 7   NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
           N  L++VLDL         LP  +G L++L YLSL   KV  +P ++ NL  L  L+L+ 
Sbjct: 574 NLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLR- 632

Query: 65  TLVRELPVEIRNLKK----LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120
            +  E P+ + N+ K    LRYL           S+  +   K     G L NL+ L   
Sbjct: 633 -VDTEEPIHVPNVLKEMIQLRYL-----------SLPLKMDDKTKLELGDLVNLEYLYGF 680

Query: 121 EADSEVLKELMKLRQLRKLSIR-PQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDL-- 177
                 + +L+++ +LR L++   +  N + L   +  L NLE L  L   +  ++D   
Sbjct: 681 STQHSSVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMG 740

Query: 178 QSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237
           + + +   +L++L     M K+PD    P +++ L L   G+ EDP+ +L  L +L  +R
Sbjct: 741 EFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVR 800

Query: 238 LA 239
           LA
Sbjct: 801 LA 802

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
           + S+ +   +KVLDL +  +  LP+ +G L  L  L++   ++  +P+SIGNLL L++L+
Sbjct: 74  SCSLLSLVTIKVLDLHENQLTALPDDMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLN 133

Query: 62  LKNTLVRELPVEIRNLKKLRYL 83
           +K+  ++ELP  +  L+ LR L
Sbjct: 134 VKDNKLKELPDTLGELRSLRTL 155

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) cargos.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%)

Query: 5   IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
           I + + ++V D    P+  LP G   L NL  L L +  +  +P   G+L  LESL+L+ 
Sbjct: 102 IKHLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELRE 161

Query: 65  TLVRELPVEIRNLKKLRYL 83
            L++ LP  I  L KL+ L
Sbjct: 162 NLLKHLPETISQLTKLKRL 180

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 36/253 (14%)

Query: 1   MNTSIANFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNL---- 54
           + +S    +L++VLD+  A +    L   +G L++L YL+L++ +V  IP S+GNL    
Sbjct: 577 LGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLI 636

Query: 55  -LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTN 113
            L L  L   +TLV   P  ++ +++LRYL           ++ ++   K      +L  
Sbjct: 637 YLNLVILVSGSTLV---PNVLKEMQQLRYL-----------ALPKDMGRKTKLELSNLVK 682

Query: 114 LQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVL----- 167
           L+ L      +  L++L  + +LR L+I  +     + L   I  L+ LE+L +      
Sbjct: 683 LETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSE 742

Query: 168 MKSKEE--VLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIR 225
           M++KE   V D         YL+ L  K  M +L      P ++  L L    L EDP+ 
Sbjct: 743 MRTKEAGIVFDF-------VYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMP 795

Query: 226 VLHALPNLLQLRL 238
           +L  L  L +L L
Sbjct: 796 ILEKLHQLKELEL 808

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 36/253 (14%)

Query: 1   MNTSIANFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNL---- 54
           + +S    +L++VLD+  A +    L   +G L++L YL+L++ +V  IP S+GNL    
Sbjct: 577 LGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLI 636

Query: 55  -LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTN 113
            L L  L   +TLV   P  ++ +++LRYL           ++ ++   K      +L  
Sbjct: 637 YLNLVILVSGSTLV---PNVLKEMQQLRYL-----------ALPKDMGRKTKLELSNLVK 682

Query: 114 LQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVL----- 167
           L+ L      +  L++L  + +LR L+I  +     + L   I  L+ LE+L +      
Sbjct: 683 LETLKNFSTKNCSLEDLRGMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSE 742

Query: 168 MKSKEE--VLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIR 225
           M++KE   V D         YL+ L  K  M +L      P ++  L L    L EDP+ 
Sbjct: 743 MRTKEAGIVFDF-------VYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMP 795

Query: 226 VLHALPNLLQLRL 238
           +L  L  L +L L
Sbjct: 796 ILEKLHQLKELEL 808

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
147856116	1894	hypothetical protein VITISV_006820 [Viti	0.946	0.130	0.434	4e-50
359480122	934	PREDICTED: disease resistance protein RP	0.957	0.267	0.472	8e-50
224138276	948	nbs-lrr resistance protein [Populus tric	0.957	0.263	0.434	2e-46
224138304	948	nbs-lrr resistance protein [Populus tric	0.957	0.263	0.434	2e-46
224098990	948	nbs-lrr resistance protein [Populus tric	0.957	0.263	0.434	2e-46
105922948	1997	NBS-NBS-LRR type disease resistance prot	0.965	0.126	0.441	6e-46
224138300	974	cc-nbs-lrr resistance protein [Populus t	0.965	0.258	0.441	8e-46
357484815	940	Disease resistance protein RPP8 [Medicag	0.965	0.268	0.425	1e-45
225465433	908	PREDICTED: disease resistance protein RP	0.961	0.276	0.417	2e-45
255582947	935	Disease resistance protein RPM1, putativ	0.950	0.265	0.444	5e-45

>gi|147856116|emb|CAN80288.1| hypothetical protein VITISV_006820 [Vitis vinifera]

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 4/251 (1%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
            TS+ NF L+K+LD E AP+  +PE +G+L +L YLSL   KVK++PKSIG L  L++LD
Sbjct: 521 GTSLTNFNLLKILDFEKAPLYSVPEDLGNLFHLRYLSLSRTKVKMLPKSIGKLQNLQTLD 580

Query: 62  LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIE 121
           LK++LV  LPVEI+ L+KLR+++ Y Y               +  G GS+ +LQKLC +E
Sbjct: 581 LKHSLVDALPVEIKKLRKLRHILAYAYKVCPEWDFYTTRGIHIGEGIGSMLDLQKLCYVE 640

Query: 122 ADSEV--LKELMKLRQLRKLSIRP-QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQ 178
           A+  +  ++EL KLRQLR+L I      +G  LC  I+N+++LE+L +  K  +++L L+
Sbjct: 641 ANHGMGLIEELGKLRQLRRLGITNLVEDDGLRLCASISNMKHLESLCICSKD-DDILKLE 699

Query: 179 SLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238
           ++S PP+YL+ LY +G + KLP+W+   ++++R+ L  SGL+ DP+ VL ALPNLL++ L
Sbjct: 700 TISVPPRYLRNLYLQGCLSKLPEWLPTLRSLVRVCLRRSGLSYDPVEVLQALPNLLEVEL 759

Query: 239 AGTYNYELFHF 249
              Y+ E   F
Sbjct: 760 HTAYDGECLCF 770

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera]

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 169/254 (66%), Gaps = 4/254 (1%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
           +T  +  KL+KVLD +DAP+  +PE +G+L +L +LSLR  KVK++PKSIG L  L++LD
Sbjct: 566 STLASKCKLVKVLDFKDAPLESVPEDLGNLFHLKFLSLRKTKVKMLPKSIGKLQNLQTLD 625

Query: 62  LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIE 121
           LK++LV ELPVEI  L+KLR+++ Y Y F    S        +  G G L +LQKLC +E
Sbjct: 626 LKHSLVEELPVEINRLQKLRHILAYNYNFDVEFSSVSVKGVHVKEGIGCLEDLQKLCFVE 685

Query: 122 AD--SEVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQ 178
            +  ++V+KEL KLRQLRKL I +    NG+ LC  I  + +L++L +   +++E+LDLQ
Sbjct: 686 GNQGTDVIKELGKLRQLRKLGITKLTRENGQPLCASIMKMNHLKSLSISSSTEDEILDLQ 745

Query: 179 SLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA-LPNLLQLR 237
            +S+PP  L RL   G + KLPDWI K K++++LGL  S L+ DP+ VL A LPNLL+L 
Sbjct: 746 HVSDPPPCLSRLELYGRLDKLPDWISKLKSLVKLGLWKSRLSHDPMGVLGAQLPNLLELE 805

Query: 238 LAGTYNYELFHFEA 251
           L  T+  E   FEA
Sbjct: 806 LLQTHAVEQLCFEA 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138276|ref|XP_002326562.1| nbs-lrr resistance protein [Populus trichocarpa] gi|105922886|gb|ABF81442.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222833884|gb|EEE72361.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 3/253 (1%)

Query: 6   ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT 65
              +L+ VLDLE AP+   P  V SL  L YLSLRN +V  IP SI  L  LE+LDLK+ 
Sbjct: 572 GRLRLLHVLDLEGAPLKEFPNEVVSLFLLKYLSLRNTRVSFIPSSISKLKNLETLDLKHA 631

Query: 66  LVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS- 124
            V  LP EIR L+KL YL+VY+Y   S   I  +   K     G L ++QKLC +EA   
Sbjct: 632 QVSVLPAEIRKLRKLCYLLVYRYEIDSDDRIPAKYGFKAPAHIGGLQSIQKLCFVEAHQG 691

Query: 125 -EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN 182
             ++ EL +L+QLR+L I + +  +GK LC  I  L NL  L +   ++ E++DL  L++
Sbjct: 692 RNLMLELGRLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLAS 751

Query: 183 PPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTY 242
           PPQ+LQRLY  G M+K PDWI    ++++L L  S L+EDP+  L  LPNL+ L     Y
Sbjct: 752 PPQFLQRLYLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVY 811

Query: 243 NYELFHFEAENWK 255
           N E+  F+A+ ++
Sbjct: 812 NGEILCFQAKGFQ 824

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138304|ref|XP_002326569.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833891|gb|EEE72368.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 3/253 (1%)

Query: 6   ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT 65
              +L+ VLDLE AP+   P  V SL  L YLSLRN +V  IP SI  L  LE+LDLK+ 
Sbjct: 572 GRLRLLHVLDLEGAPLKEFPNEVVSLFLLKYLSLRNTRVSFIPSSISKLKNLETLDLKHA 631

Query: 66  LVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS- 124
            V  LP EIR L+KL YL+VY+Y   S   I  +   K     G L ++QKLC +EA   
Sbjct: 632 QVSILPAEIRKLRKLCYLLVYRYEIDSDDRIPTKYGFKAPAHIGGLQSIQKLCFVEAHQG 691

Query: 125 -EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN 182
             ++ EL +L+QLR+L I + +  +GK LC  I  L NL  L +   ++ E++DL  L++
Sbjct: 692 RNLMLELGRLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLAS 751

Query: 183 PPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTY 242
           PPQ+LQRLY  G M+K PDWI    ++++L L  S L+EDP+  L  LPNL+ L     Y
Sbjct: 752 PPQFLQRLYLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVY 811

Query: 243 NYELFHFEAENWK 255
           N E+  F+A+ ++
Sbjct: 812 NGEILCFQAKGFQ 824

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098990|ref|XP_002334517.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222872779|gb|EEF09910.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/253 (43%), Positives = 152/253 (60%), Gaps = 3/253 (1%)

Query: 6   ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT 65
              +L+ VLDLE AP+   P  V SL  L YLSLRN +V  IP SI  L  LE+LDLK+ 
Sbjct: 572 GRLRLLHVLDLEGAPLKEFPNEVVSLFLLKYLSLRNTRVSFIPSSISKLKNLETLDLKHA 631

Query: 66  LVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS- 124
            V  LP EIR L+KL YL+VY+Y   S   I  +   K     G L ++QKLC +EA   
Sbjct: 632 QVSVLPAEIRKLRKLCYLLVYRYEIDSDDWIPTKYGFKAPAHIGGLQSIQKLCFVEAHQG 691

Query: 125 -EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN 182
             ++ EL +L+QLR+L I + +  +GK LC  I  L NL  L +   ++ E++DL  L++
Sbjct: 692 RNLMLELGRLKQLRRLGIVKLKKKHGKALCSSIERLTNLRALSLTSITESEIIDLDYLAS 751

Query: 183 PPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTY 242
           PPQ+LQRLY  G M+K PDWI    ++++L L  S L+EDP+  L  LPNL+ L     Y
Sbjct: 752 PPQFLQRLYLAGRMEKFPDWISSLDSLVKLVLKWSKLSEDPLLSLQYLPNLVHLEFVQVY 811

Query: 243 NYELFHFEAENWK 255
           N E+  F+A+ ++
Sbjct: 812 NGEILCFQAKGFQ 824

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922948|gb|ABF81446.1| NBS-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 157/256 (61%), Gaps = 4/256 (1%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
           S +  +L+ VLD+E  P+   P  V SL+ L YLSLRN KV  +P SI  L  LESLDLK
Sbjct: 564 SPSRSRLLTVLDMEGTPLKEFPNEVVSLIFLKYLSLRNTKVNSVPSSISKLQNLESLDLK 623

Query: 64  NTLVRELPVEIRNLKKLRYLMVYQY-YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
           +  V ELPV+I  L+KLR+L+VY+Y    S   I  +   K     G+L ++QKLC +EA
Sbjct: 624 HAQVTELPVDILKLQKLRHLLVYRYETHESDDQIRNKHGFKAPAQIGNLLSVQKLCFLEA 683

Query: 123 DS--EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQS 179
           D   +++ EL +L  LR+L I + +  +GKDLC  I  L NL  L V   ++ EV+DL+ 
Sbjct: 684 DQGQKLMSELGRLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRALSVTSITESEVIDLEY 743

Query: 180 LSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239
           LS+PPQ+LQRLY  G +++LPDWI    ++++L L  S L EDP+  L  LPNL+ L   
Sbjct: 744 LSSPPQFLQRLYLTGRLERLPDWILSLDSLVKLVLKWSRLREDPLLFLQNLPNLVHLEFI 803

Query: 240 GTYNYELFHFEAENWK 255
             Y+ E  HF  E ++
Sbjct: 804 QVYSGEALHFSNEGFE 819

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138300|ref|XP_002326568.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|105922919|gb|ABF81444.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222833890|gb|EEE72367.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 157/256 (61%), Gaps = 4/256 (1%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
           S +  +L+ VLD+E  P+   P  V SL+ L YLSLRN KV  +P SI  L  LESLDLK
Sbjct: 564 SPSRSRLLTVLDMEGTPLKEFPNEVVSLIFLKYLSLRNTKVNSVPSSISKLQNLESLDLK 623

Query: 64  NTLVRELPVEIRNLKKLRYLMVYQY-YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
           +  V ELPV+I  L+KLR+L+VY+Y    S   I  +   K     G+L ++QKLC +EA
Sbjct: 624 HAQVTELPVDILKLQKLRHLLVYRYETHESDDQIRNKHGFKAPAQIGNLLSVQKLCFLEA 683

Query: 123 DS--EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQS 179
           D   +++ EL +L  LR+L I + +  +GKDLC  I  L NL  L V   ++ EV+DL+ 
Sbjct: 684 DQGQKLMSELGRLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRALSVTSITESEVIDLEY 743

Query: 180 LSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239
           LS+PPQ+LQRLY  G +++LPDWI    ++++L L  S L EDP+  L  LPNL+ L   
Sbjct: 744 LSSPPQFLQRLYLTGRLERLPDWILSLDSLVKLVLKWSRLREDPLLFLQNLPNLVHLEFI 803

Query: 240 GTYNYELFHFEAENWK 255
             Y+ E  HF  E ++
Sbjct: 804 QVYSGEALHFSNEGFE 819

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484815|ref|XP_003612695.1| Disease resistance protein RPP8 [Medicago truncatula] gi|355514030|gb|AES95653.1| Disease resistance protein RPP8 [Medicago truncatula]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 154/256 (60%), Gaps = 4/256 (1%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
            S    KL+ VLDL+DAP+   P  + +L  L +LSL+N KVK IP SI  L  LE+LDL
Sbjct: 565 CSSTGVKLLNVLDLQDAPLEDFPLEIINLYLLKHLSLKNTKVKNIPSSIKKLQYLETLDL 624

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
           K+T V ELP EI  LK+LR+L+VY+Y   S +    +   K+    G++ +LQKLC ++ 
Sbjct: 625 KHTCVMELPFEIAELKRLRHLLVYRYKIESYAHFHSKNGFKVAAPIGNMQSLQKLCFVDV 684

Query: 123 D---SEVLKELMKLRQLRKLSIRP-QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQ 178
           D     ++ EL +L QLRKL IR  +  +G  LC  I  + NL +L +    ++EV+D+ 
Sbjct: 685 DQGSGALMVELGRLTQLRKLGIRKMRKEDGAALCSSIEKMINLRSLSITAIEEDEVIDIH 744

Query: 179 SLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238
            +SNPP+YLQ+LY  G ++K P WI   KN++R+ L  S L EDP+  L  LPNL  L  
Sbjct: 745 DISNPPRYLQQLYLSGRLEKFPQWINSCKNLVRVFLKWSRLEEDPLVYLQGLPNLRHLEF 804

Query: 239 AGTYNYELFHFEAENW 254
              Y  E+ HF A+ +
Sbjct: 805 LQVYVGEMLHFNAKGF 820

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/254 (41%), Positives = 159/254 (62%), Gaps = 3/254 (1%)

Query: 1   MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
           + T  + FK +KVLDL  AP+  +PE +G+LL+L YLSLR  +V+++P+SIG L  L++L
Sbjct: 563 LGTLASKFKFLKVLDLGGAPLERIPEDLGNLLHLRYLSLRKTRVRMLPRSIGKLQNLQTL 622

Query: 61  DLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120
           DLK +LV +LPVEI  L+KL  ++ + Y + +           +  G G L +LQKL  +
Sbjct: 623 DLKYSLVEDLPVEINRLQKLCNILCFDYAYKADLRWDSVRGVHVKEGIGGLEDLQKLTAV 682

Query: 121 EADS--EVLKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDL 177
           +     +++ EL KLRQLRKL I +   GNG+ LC  I+N+ +L+ L V   S++E+LD+
Sbjct: 683 DVTHGVQIITELGKLRQLRKLGITKLSRGNGQRLCASISNMVHLKYLSVCSLSEDEILDI 742

Query: 178 QSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237
           Q +SNPP +L  +Y  G +++LPDWI K  +++R+ L  S L  DP++V  ALP+L  L 
Sbjct: 743 QYMSNPPPFLSTVYLMGRLERLPDWISKLPSLVRVILTRSNLANDPMQVFQALPSLQALS 802

Query: 238 LAGTYNYELFHFEA 251
           L  T   E   F A
Sbjct: 803 LFQTSVVEQLCFGA 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582947|ref|XP_002532244.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223528062|gb|EEF30138.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 157/252 (62%), Gaps = 4/252 (1%)

Query: 1   MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
           + + I +FKL++ LDLE AP+ Y+P+ VG+L +L YL L++  VK++PKSIG L  LE+L
Sbjct: 566 ITSVIDDFKLLRSLDLEGAPLDYIPDEVGNLWHLKYLCLKDTNVKVLPKSIGKLCNLETL 625

Query: 61  DLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120
           DL+ +LV +LP+EI  L KLR+L+ Y + + +   I    A K+H   GSL  LQKL  I
Sbjct: 626 DLRQSLVLDLPIEINRLLKLRHLLAYFFNYDNEFYINSLRAVKMHGNIGSLKALQKLSYI 685

Query: 121 EADSEV--LKELMKLRQLRKLSI-RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDL 177
           EAD  V  ++++ +L QLRKL I + +  NG DLC  +  +  L+ L V   S EE LDL
Sbjct: 686 EADHGVDLIRQIERLTQLRKLGITKLKKENGLDLCYALEKMSCLQTLKVSSGSVEEFLDL 745

Query: 178 QSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237
           +S+S PP  LQ LY  G + +LP WI K   +++L  + S L  D I+VL ALPNL  LR
Sbjct: 746 RSISGPP-LLQYLYLSGPLVELPPWISKLSCLVKLVFNWSRLGNDAIQVLQALPNLQMLR 804

Query: 238 LAGTYNYELFHF 249
                N +  HF
Sbjct: 805 FYEGCNAKQLHF 816

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.908	0.255	0.288	5.9e-24
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.858	0.246	0.256	3.6e-08
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.827	0.240	0.278	8.2e-08
UNIPROTKB|F1RS16	723	LRSAM1 "Uncharacterized protei	0.306	0.110	0.375	1.2e-07
UNIPROTKB|D6RGK9	163	CNOT6L "CCR4-NOT transcription	0.318	0.509	0.337	1.2e-07
UNIPROTKB|Q08E63	724	LRSAM1 "Uncharacterized protei	0.306	0.110	0.362	1.9e-07
UNIPROTKB|E1BRU6	728	LRSAM1 "Uncharacterized protei	0.314	0.112	0.390	1.9e-07
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.486	0.139	0.325	4.3e-07
UNIPROTKB|E2RR59	728	LRSAM1 "Uncharacterized protei	0.306	0.109	0.362	5.3e-07
UNIPROTKB|J9P525	728	LRSAM1 "Uncharacterized protei	0.306	0.109	0.362	5.3e-07

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 69/239 (28%), Positives = 125/239 (52%)

Query:     5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
             + +  L++ LDLED+ +  LP+ + ++ NL YL+L   +VK +PK+   L+ LE+L+ K+
Sbjct:   577 LPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKH 636

Query:    65 TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS 124
             + + ELP+ +  LKKLRYL+ ++      S+       ++ P    L +LQ +    A+ 
Sbjct:   637 SKIEELPLGMWKLKKLRYLITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAED 696

Query:   125 EVLKELMKLRQLRKLS-IRPQNGNGKDLCXXXXXXXXXXXXXXXMKSKEEVLDLQSLSNP 183
             E++K L  + QL ++S +  +  +G+DLC                  +EE L++  L   
Sbjct:   697 ELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIAT 756

Query:   184 PQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGTY 242
                +++L+  G ++++P W    +N+  LGL  S L E+ I  +  LP L+ L     Y
Sbjct:   757 AS-IEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAY 814

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 61/238 (25%), Positives = 109/238 (45%)

Query:     7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
             N  L++VLDL         LP  +G L++L YLSL   KV  +P ++ NL  L  L+L+ 
Sbjct:   574 NLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLR- 632

Query:    65 TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS 124
              +  E P+ + N+ K    M+   Y +    + ++   +L    G L NL+ L       
Sbjct:   633 -VDTEEPIHVPNVLKE---MIQLRYLSLPLKMDDKTKLEL----GDLVNLEYLYGFSTQH 684

Query:   125 EVLKELMKLRQLRKLSIR-PQNGNGKDLCXXXXXXXXXXXXXXXMKSKEEVLDLQS--LS 181
               + +L+++ +LR L++   +  N + L                   +  ++D     + 
Sbjct:   685 SSVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVL 744

Query:   182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239
             +   +L++L     M K+PD    P +++ L L   G+ EDP+ +L  L +L  +RLA
Sbjct:   745 DHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLA 802

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 66/237 (27%), Positives = 107/237 (45%)

Query:     9 KLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL 66
             KL++VLDL  A      LP  +G L++L YLSL++ KV  +P S+ NL+ L  LD++   
Sbjct:   577 KLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDF 636

Query:    67 VRE-LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIE---A 122
                 +P     +++LRYL + ++       + E+   KL      L+NL+KL  +E    
Sbjct:   637 TDIFVPNVFMGMRELRYLELPRF-------MHEKT--KLE-----LSNLEKLEALENFST 682

Query:   123 DSEVLKELMKLRQLRKLSIRPQNGNGKDLCXXXXXXXXXXXXXXXMKSKE-EVLDLQSLS 181
              S  L++L  + +LR L I    G                     M++     +  + + 
Sbjct:   683 KSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERMV 742

Query:   182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238
                 YL++L    +M +LP     P ++  L L    L EDP+ +L  L  L  L L
Sbjct:   743 LDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSL 799

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1RS16 LRSAM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 30/80 (37%), Positives = 51/80 (63%)

Query:     4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
             S+ +   +KVLDL D  +  LP+ +G L  L  L++   ++  +P+SIGNL+ L++L+LK
Sbjct:    76 SLLSLATIKVLDLHDNQLTALPDDIGQLTALQVLNVERNQLTSLPRSIGNLIQLQTLNLK 135

Query:    64 NTLVRELPVEIRNLKKLRYL 83
             +  ++ELP  +  L+ LR L
Sbjct:   136 DNKLKELPDTLGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RGK9 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 28/83 (33%), Positives = 47/83 (56%)

Query:     1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
             ++TS+ +   +  L L D  +  +P  +  L NL YL L + K++ +P  +GN++ L  L
Sbjct:    48 LSTSLWSLTHLTALHLNDNYLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLREL 107

Query:    61 DLKNTLVRELPVEIRNLKKLRYL 83
              L N L+R LP E+  L +L+ L
Sbjct:   108 LLNNNLLRVLPYELGRLFQLQTL 130

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0061157 "mRNA destabilization" evidence=IEA

UNIPROTKB|Q08E63 LRSAM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/80 (36%), Positives = 51/80 (63%)

Query:     4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
             S+ +   +KVLDL D  +  LP+ +G L  L  L++   ++  +P+SIGNL+ L++L++K
Sbjct:    76 SLLSLATIKVLDLHDNQLTALPDDIGQLTALQVLNMERNQLTYLPRSIGNLIQLQTLNVK 135

Query:    64 NTLVRELPVEIRNLKKLRYL 83
             +  ++ELP  +  L+ LR L
Sbjct:   136 DNRLKELPDTLGELRSLRTL 155

GO:0005737 "cytoplasm" evidence=ISS

GO:0046755 "non-lytic virus budding" evidence=ISS

GO:0044425 "membrane part" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BRU6 LRSAM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query:     4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
             S+ +   +KVLDL D  +  LP  +G L +L  L+L    +K +P+SIG+L  L+ L++K
Sbjct:    76 SLLSLITVKVLDLHDNQLASLPADIGQLTSLQVLNLERNLLKCLPQSIGDLAQLQVLNVK 135

Query:    64 NTLVRELPVEIRNLKKLRYLMV 85
                +RELP  +  L+ LR L V
Sbjct:   136 GNKLRELPATVSGLRSLRTLNV 157

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0044425 "membrane part" evidence=IEA

GO:0045806 "negative regulation of endocytosis" evidence=IEA

GO:0046755 "non-lytic virus budding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0070086 "ubiquitin-dependent endocytosis" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query:    10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT-LVR 68
             +++VLDL    +  +P  +  L+ L++LS+   K+ ++P+ +GNL  L+ LDL+ T  ++
Sbjct:   559 VLRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQ 618

Query:    69 ELPVE-IRNLKKLRYL-MVYQYYFTSGSSIAEEAAAKLHPGFGSLT---NLQKLCIIEAD 123
              +P + I  L KL  L + Y Y      S  E+ A +L  GF  L    NL  L I    
Sbjct:   619 TIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEEL--GFADLEYLENLTTLGITVLS 676

Query:   124 SEVLKELMKLRQLRK 138
              E LK L +   L K
Sbjct:   677 LETLKTLFEFGALHK 691

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

UNIPROTKB|E2RR59 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 29/80 (36%), Positives = 51/80 (63%)

Query:     4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
             S+ N   +KVLDL +  +  LP+ +G L  L  L++   ++  +P+SIGNL+ L++L++K
Sbjct:    76 SLLNLITIKVLDLHNNQLSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMK 135

Query:    64 NTLVRELPVEIRNLKKLRYL 83
             +  ++ELP  +  L+ LR L
Sbjct:   136 DNKLKELPDTVGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P525 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
 Identities = 29/80 (36%), Positives = 51/80 (63%)

Query:     4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
             S+ N   +KVLDL +  +  LP+ +G L  L  L++   ++  +P+SIGNL+ L++L++K
Sbjct:    76 SLLNLITIKVLDLHNNQLSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMK 135

Query:    64 NTLVRELPVEIRNLKKLRYL 83
             +  ++ELP  +  L+ LR L
Sbjct:   136 DNKLKELPDTVGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017412001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (358 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 4   SIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLD 61
           S+ N   ++ L L    +V  +P  +G + +L ++ L  N     IP  IG L  L  LD
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 62  L-KNTLVRELPVEIRNLKKLRYLMVYQYYFT 91
           L  N L   +P  + NLK L+YL +YQ   +
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 21/156 (13%)

Query: 24  LPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLK-NTLVRELPVEIRNLKKLR 81
           +P  +G+L NL YL L +NK    IP SI +L  L SLDL  N+L  E+P  +  L+ L 
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 82  YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII--EADSEVLKELMKLRQLRKL 139
            L ++   FT           K+     SL  LQ L +   +   E+ K L K   L  L
Sbjct: 312 ILHLFSNNFT----------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 140 SIRPQNGNGK---DLCVLIANLENLENLIVLMKSKE 172
            +   N  G+    LC    +  NL  LI+   S E
Sbjct: 362 DLSTNNLTGEIPEGLC----SSGNLFKLILFSNSLE 393

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 47/194 (24%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
           + + N   +K LDL    +  LP+ + +L NL+ L L   K+  +P  I  L  LE LDL
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
            N  + EL   + NLK L  L          S+   E   +      +L  L       +
Sbjct: 217 SNNSIIELLSSLSNLKNLSGL--------ELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268

Query: 123 DSEVLKELMKLRQL-----RKLSIRPQNGNGKDLCVLI-------ANLENLENLIVLMKS 170
               L  L  LR+L        +  P       L  L+         LE   N I+L  +
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Query: 171 KEEVLDLQSLSNPP 184
                +  S     
Sbjct: 329 ILSNGETSSPEALS 342

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 23/161 (14%)

Query: 24  LPEGVGSLLNLHYLSLR-NKKVKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLR 81
           +P  +GS  +L  L L  N  V  IP S+ NL  LE L L  N LV ++P E+  +K L+
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 82  YLMVYQYYFTSGSSIAEEA----------------AAKLHPGFGSLTNLQKLCIIEA--D 123
           +  +Y  Y      I  E                    +    G+L NLQ L + +    
Sbjct: 216 W--IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 124 SEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL 164
             +   +  L++L  L +   + +G ++  L+  L+NLE L
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEIL 313

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.3
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	99.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
PLN03150	623	hypothetical protein; Provisional	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
PLN03150	623	hypothetical protein; Provisional	98.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.5
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
KOG4341	483	consensus F-box protein containing LRR [General fu	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.07
PRK15386	426	type III secretion protein GogB; Provisional	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG4308	478	consensus LRR-containing protein [Function unknown	95.63
KOG4308	478	consensus LRR-containing protein [Function unknown	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.6
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.82
smart00370	26	LRR Leucine-rich repeats, outliers.	92.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.42
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.29
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.06
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.49

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.7e-25  Score=205.80  Aligned_cols=202  Identities=26%  Similarity=0.397  Sum_probs=83.6

Q ss_pred             cccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccc
Q 042184            4 SIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKL   80 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L   80 (261)
                      .++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..+..+++|
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            3444444444444444443 34444444444444444444443 34444444444444444444443 344444444444


Q ss_pred             cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                      ++|++++|.+++          .+|..++.+++|+.|++++|  .+..+..+..+++|+.|++++ +.....+|..+..+
T Consensus       239 ~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l  307 (968)
T PLN00113        239 NHLDLVYNNLTG----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQL  307 (968)
T ss_pred             CEEECcCceecc----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCC
Confidence            444444444332          23344444444444444444  223333444444444444443 12222333334444


Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCC
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSG  218 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~  218 (261)
                      ++|++|++++|.+.+..+ ..+..++ +|+.|++++ .++ .+|..++.+++|+.|++++|.
T Consensus       308 ~~L~~L~l~~n~~~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIP-VALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CCCcEEECCCCccCCcCC-hhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            444444444443333222 2233333 444444443 333 333333333334444433333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=6.8e-25  Score=204.03  Aligned_cols=232  Identities=22%  Similarity=0.351  Sum_probs=150.6

Q ss_pred             CCccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhcc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNL   77 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l   77 (261)
                      +|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            3567788888888888888877 67788888888888888888877 77777888888888888888876 677778888


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHH
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLI  155 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  155 (261)
                      ++|++|++++|.+++          ..|..+..+++|+.|++++|  .+..+..+..+++|+.|++.+ +...+..|..+
T Consensus       260 ~~L~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~  328 (968)
T PLN00113        260 KNLQYLFLYQNKLSG----------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS-NNFTGKIPVAL  328 (968)
T ss_pred             CCCCEEECcCCeeec----------cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC-CccCCcCChhH
Confidence            888888888887654          34555555666666666655  334455555555666665554 22333344445


Q ss_pred             hCCCCCceEEEeecccccccccccccCCc-----------------------cccceEEEec-cCc-CCCccccCCCccc
Q 042184          156 ANLENLENLIVLMKSKEEVLDLQSLSNPP-----------------------QYLQRLYFKG-DMK-KLPDWIFKPKNVI  210 (261)
Q Consensus       156 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~-~l~-~l~~~~~~~~~L~  210 (261)
                      ..+++|+.|++++|.+.+..+ ..+..++                       .+++.|++.+ .+. .+|..+..+++|+
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~  407 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR  407 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence            555555555555555443333 2233444                       0444444444 333 4455555566666


Q ss_pred             EEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          211 RLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      .|++++|.+++..+..+..+++|+.|+++ |.+++
T Consensus       408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             EEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            66666666666666666666777777776 66553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=9.7e-24  Score=176.99  Aligned_cols=228  Identities=19%  Similarity=0.232  Sum_probs=170.1

Q ss_pred             ccCccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184            5 IANFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR   81 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   81 (261)
                      +..++.||.+.+..|+++  .+|..+..+..|.+|+++.|++.++|..+..-.++-+|++++|++..+|.. +.++..|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            445566666666666666  677777777777777777777777777777777777777777777766653 44667777


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE  159 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  159 (261)
                      .|++|+|           ....+|+....+..|++|.+++|  .-.-...+..+++|++|.+++.+.....+|.++..+.
T Consensus       154 fLDLS~N-----------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~  222 (1255)
T KOG0444|consen  154 FLDLSNN-----------RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH  222 (1255)
T ss_pred             hhccccc-----------hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence            7777777           45578999999999999999998  3333455667788888888874445567788888889


Q ss_pred             CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184          160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL  238 (261)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  238 (261)
                      +|..+|+++|.+... | +.+-.++ +|++|.|++ .++++.-..+.-.+|++|++++|+++. +|.++.++++|+.|.+
T Consensus       223 NL~dvDlS~N~Lp~v-P-ecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  223 NLRDVDLSENNLPIV-P-ECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhhccccccCCCcc-h-HHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHh
Confidence            999999999876533 2 2355677 899999988 888776656666788999999998884 6778888999999998


Q ss_pred             c-ccccceee
Q 042184          239 A-GTYNYELF  247 (261)
Q Consensus       239 ~-n~~~~~~~  247 (261)
                      . |.++.+++
T Consensus       299 n~NkL~FeGi  308 (1255)
T KOG0444|consen  299 NNNKLTFEGI  308 (1255)
T ss_pred             ccCcccccCC
Confidence            8 88876653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=4.9e-23  Score=172.79  Aligned_cols=233  Identities=25%  Similarity=0.262  Sum_probs=155.4

Q ss_pred             CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccchHhhcccc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPVEIRNLKK   79 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~   79 (261)
                      ||+.+-++..|..||++.|++.++|..+..-+++-+|++++|+|..+|.. +-++..|-+|+++.|.+..+|+.+..+.+
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM  174 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence            68889999999999999999999999998889999999999999999976 45888899999999999999999999999


Q ss_pred             ccceeccceecccC---------------chhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184           80 LRYLMVYQYYFTSG---------------SSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        80 L~~L~l~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      |++|++++|.+..-               ..-++.....+|..+..+.+|..++++.| ...+|+.+-++++|+.|++++
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence            99999999875421               00012233345555556666666666666 556666666666677666666


Q ss_pred             cCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc--CCCccccCCCcccEEEeccCCCC
Q 042184          144 QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLT  220 (261)
Q Consensus       144 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~  220 (261)
                        +....+....+...+|++|+++.|.++. .| ..+..++ .|++|.+.+ .++  .+|+.++.+..|+.+..++|.+.
T Consensus       255 --N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP-~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  255 --NKITELNMTEGEWENLETLNLSRNQLTV-LP-DAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             --CceeeeeccHHHHhhhhhhccccchhcc-ch-HHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence              2233333334444555566666555442 22 2344555 566665554 332  55555555555555555444433


Q ss_pred             CChhHHhccCCcccceEec
Q 042184          221 EDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       221 ~~~~~~~~~~~~L~~L~l~  239 (261)
                       ..|+.+..|++|+.|.++
T Consensus       330 -lVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  330 -LVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             -cCchhhhhhHHHHHhccc
Confidence             344455555555555555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.80  E-value=4.2e-23  Score=164.57  Aligned_cols=223  Identities=27%  Similarity=0.309  Sum_probs=166.6

Q ss_pred             CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      |++++.+.+++.++.+.|.+.++|+.++.+..++.++++.|.+.++|+.++.+..++.++..+|++...|.++..+.+|.
T Consensus        84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~  163 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLS  163 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHH
Confidence            56666677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN  160 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  160 (261)
                      .+++.+|++           ..+|+..-+++.|++++...| ...+|..++.+.+|..|++..  +....+| .|+.|+.
T Consensus       164 ~l~~~~n~l-----------~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~--Nki~~lP-ef~gcs~  229 (565)
T KOG0472|consen  164 KLDLEGNKL-----------KALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR--NKIRFLP-EFPGCSL  229 (565)
T ss_pred             Hhhccccch-----------hhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh--cccccCC-CCCccHH
Confidence            777777743           356666666778888887777 677778888888888888766  4444455 7778888


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      |..+.++.|.+. ..+.+..++++ ++.+||+++ .++++|+.+..+++|++||+++|.+++. +-.++++ .|+.|-+.
T Consensus       230 L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~le  305 (565)
T KOG0472|consen  230 LKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALE  305 (565)
T ss_pred             HHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhc
Confidence            888888887654 44545567888 899999998 8999999888889999999999998864 4466777 78888777


Q ss_pred             -ccc
Q 042184          240 -GTY  242 (261)
Q Consensus       240 -n~~  242 (261)
                       |++
T Consensus       306 GNPl  309 (565)
T KOG0472|consen  306 GNPL  309 (565)
T ss_pred             CCch
Confidence             765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=1e-20  Score=157.49  Aligned_cols=237  Identities=19%  Similarity=0.199  Sum_probs=153.2

Q ss_pred             cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLKKL   80 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L   80 (261)
                      +|..=.++++|++++|.|+.+. ..|..+.+|..|.++.|+++.+|.. +.++++|+.|++..|.+... ...+..+++|
T Consensus       168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            3444467889999999888444 5677888899999999998877754 55689999999988887733 4456667777


Q ss_pred             cceeccceecccC-------------chhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeecc
Q 042184           81 RYLMVYQYYFTSG-------------SSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQ  144 (261)
Q Consensus        81 ~~L~l~~~~~~~~-------------~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~  144 (261)
                      +.|.+.+|.+...             +.+.-+.+..+. .++..++.|+.|++++|  ....++.+..+++|+.|+++. 
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-  326 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-  326 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-
Confidence            7777777654321             000111111111 23445556666666666  333455566666666666665 


Q ss_pred             CCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc----CCCccccCCCcccEEEeccCCC
Q 042184          145 NGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK----KLPDWIFKPKNVIRLGLDLSGL  219 (261)
Q Consensus       145 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~----~l~~~~~~~~~L~~L~l~~~~~  219 (261)
                      +....-.+..+..+..|++|.+++|.+..... ..+..+. +|++|+|+. .+.    +-...+..+++|+.|++.+|++
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-GAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHh-hHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            23333334455566666666666665543333 3466667 888888877 554    2222344588888888888888


Q ss_pred             CCChhHHhccCCcccceEec-cccc
Q 042184          220 TEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       220 ~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ....-.++.+++.|++|++. |.+.
T Consensus       405 k~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  405 KSIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             eecchhhhccCcccceecCCCCcce
Confidence            77666788888899999988 7663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=7.1e-21  Score=158.43  Aligned_cols=227  Identities=18%  Similarity=0.235  Sum_probs=144.1

Q ss_pred             cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKL   80 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L   80 (261)
                      ++.-++.|+.||++.|.|.+++ ..+..-.++++|++++|+|+.+. ..+..+.+|.+|.+++|+++.+|. .+.++++|
T Consensus       144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence            3445666777777777777555 34444566777777777777333 346667777788888887776665 34558888


Q ss_pred             cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                      +.|++..|.+..         .+ --.|..+++|+.|.+..| ...+ -..+-.+..+++|++.. +.....--.++..+
T Consensus       224 ~~LdLnrN~iri---------ve-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  224 ESLDLNRNRIRI---------VE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGL  292 (873)
T ss_pred             hhhhccccceee---------eh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccccccc
Confidence            888888776531         11 234556666666666666 2222 22345566677777766 22222223456677


Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccce
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQL  236 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  236 (261)
                      +.|+.|++++|.+... ..+.+...+ +|++|+|+. .++++++. +..+..|++|.++.|.+.......+..+++|++|
T Consensus       293 t~L~~L~lS~NaI~ri-h~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRI-HIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             chhhhhccchhhhhee-ecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            7788888888776543 334566566 788888887 77777654 3346777777777777765444556667777777


Q ss_pred             Eec-cccc
Q 042184          237 RLA-GTYN  243 (261)
Q Consensus       237 ~l~-n~~~  243 (261)
                      |++ |.++
T Consensus       371 dLr~N~ls  378 (873)
T KOG4194|consen  371 DLRSNELS  378 (873)
T ss_pred             cCcCCeEE
Confidence            777 7654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=1.3e-20  Score=150.51  Aligned_cols=225  Identities=22%  Similarity=0.283  Sum_probs=185.6

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      -+.++..+.++++.+|.+..+|..++.+..++.++.++|++.++|+.++....+..++++.|.+..++++++.+-.+..+
T Consensus        63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL  142 (565)
T ss_pred             hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +..+|+           +..+|+.+.++.++..+.+.++ ....++..-.++.|++++...  +.-+.+|..++.+.+|.
T Consensus       143 ~~~~N~-----------i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~--N~L~tlP~~lg~l~~L~  209 (565)
T KOG0472|consen  143 DATNNQ-----------ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS--NLLETLPPELGGLESLE  209 (565)
T ss_pred             hccccc-----------cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch--hhhhcCChhhcchhhhH
Confidence            888884           4578999999999999999888 445555444499999999866  66778999999999999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCcccc-CCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF-KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-  239 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-  239 (261)
                      .|++..|.+... |  .|.++. .|+.+.++. .+..+|.... .++++..||+.+|++.+ .|..+.-+.+|+.||++ 
T Consensus       210 ~LyL~~Nki~~l-P--ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  210 LLYLRRNKIRFL-P--EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSN  284 (565)
T ss_pred             HHHhhhcccccC-C--CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccC
Confidence            999999987633 2  478888 999999999 8999998876 69999999999999985 56677788999999999 


Q ss_pred             cccccee
Q 042184          240 GTYNYEL  246 (261)
Q Consensus       240 n~~~~~~  246 (261)
                      |.+++-.
T Consensus       285 N~is~Lp  291 (565)
T KOG0472|consen  285 NDISSLP  291 (565)
T ss_pred             CccccCC
Confidence            8876544

>PLN03210 Resistant to P

Probab=99.71  E-value=1e-16  Score=150.78  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=38.2

Q ss_pred             ccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          186 YLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       186 ~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +++.|++++ .++.+|.++..+++|+.|++++|.-...++..+..+++|+.++++
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~  901 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS  901 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence            667777777 777777777778888888888775444455555667777777777

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=2.7e-19  Score=127.63  Aligned_cols=162  Identities=26%  Similarity=0.353  Sum_probs=116.2

Q ss_pred             ccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184           28 VGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG  107 (261)
Q Consensus        28 ~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~  107 (261)
                      +.++.+++.|.+++|.++.+|..+..+.+|++|++.+|+++.+|..++.+++|+.|+++-|.           ...+|.+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-----------l~~lprg   97 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-----------LNILPRG   97 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-----------hhcCccc
Confidence            34567777777777777777777777777777777777777777777777778777777763           3467777


Q ss_pred             ccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184          108 FGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP  184 (261)
Q Consensus       108 ~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  184 (261)
                      ++.++.|+.|++.+|   ...+|..+-.+..|+.|++++  +..+.+|..++++++|+.|.+.+|.+.+. + ..+..+.
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrdndll~l-p-keig~lt  173 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRDNDLLSL-P-KEIGDLT  173 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeeccCchhhC-c-HHHHHHH
Confidence            777777787777777   345666677777777777766  56666777777778888887777765532 2 2355666


Q ss_pred             cccceEEEec-cCcCCCccccC
Q 042184          185 QYLQRLYFKG-DMKKLPDWIFK  205 (261)
Q Consensus       185 ~~L~~L~l~~-~l~~l~~~~~~  205 (261)
                       .|+.|.+++ .++.+|+.++.
T Consensus       174 -~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  174 -RLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             -HHHHHhcccceeeecChhhhh
Confidence             777777777 77777766554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=1.4e-17  Score=136.57  Aligned_cols=236  Identities=19%  Similarity=0.208  Sum_probs=166.2

Q ss_pred             cccCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCcee-------cccccCCCCCCcEEeCCCCccc-cc
Q 042184            4 SIANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKI-------IPKSIGNLLGLESLDLKNTLVR-EL   70 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~-------~~~~l~~l~~L~~L~l~~~~~~-~~   70 (261)
                      .+..++.|++++++++.++     .+++.+...+.++.++++++.+..       ++..+..+++|++|++++|.+. ..
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            3456677999999999885     355566677889999998876552       3345667889999999999887 34


Q ss_pred             chHhhcccc---ccceeccceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc--c----hHHHHHHhccccccEEE
Q 042184           71 PVEIRNLKK---LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA--D----SEVLKELMKLRQLRKLS  140 (261)
Q Consensus        71 ~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~--~----~~~~~~l~~~~~L~~L~  140 (261)
                      +..+..+.+   |++|++++|.++..      ....+...+..+ ++|+.|++++|  .    ......+..++.|++|+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~  171 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDR------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN  171 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchH------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence            444444444   99999999987631      233344556666 89999999998  2    23455677778999999


Q ss_pred             eeccCCCcc---chHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCcC--CCcccc----CCC
Q 042184          141 IRPQNGNGK---DLCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMKK--LPDWIF----KPK  207 (261)
Q Consensus       141 l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~~--l~~~~~----~~~  207 (261)
                      +.++.....   .++..+...++|++|++++|.+.+...   ...+..++ +|++|++++ .++.  +.....    ..+
T Consensus       172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~-~L~~L~ls~n~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK-SLEVLNLGDNNLTDAGAAALASALLSPNI  250 (319)
T ss_pred             CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC-CCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence            988332222   234456667899999999997753221   12355677 999999998 7762  111111    247


Q ss_pred             cccEEEeccCCCCCCh----hHHhccCCcccceEec-cccccee
Q 042184          208 NVIRLGLDLSGLTEDP----IRVLHALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       208 ~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~-n~~~~~~  246 (261)
                      .|++|++++|.+++..    ...+..+++|+.++++ |.++.+.
T Consensus       251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence            8999999999998532    3455667899999999 9887653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=5.7e-17  Score=132.97  Aligned_cols=231  Identities=17%  Similarity=0.154  Sum_probs=142.6

Q ss_pred             cccCccccceeecCCCCCCC-------CcccccCcccccEEEecCCCce-ecccccCCC---CCCcEEeCCCCccc----
Q 042184            4 SIANFKLMKVLDLEDAPVVY-------LPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNL---LGLESLDLKNTLVR----   68 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~-------~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l---~~L~~L~l~~~~~~----   68 (261)
                      .+...+.+++++++++.+..       ++..+..+++|+.|++++|.+. ..+..+..+   ++|++|++++|.+.    
T Consensus        46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence            34456678888888775542       2234556778888888888775 333333333   44888888888766    


Q ss_pred             -ccchHhhcc-ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEE
Q 042184           69 -ELPVEIRNL-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLS  140 (261)
Q Consensus        69 -~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~  140 (261)
                       .+...+..+ ++|+.|++++|.+++.      ....+...+..+++|+.|++++|  .+    .++..+...++|+.|+
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~  199 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEGA------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD  199 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCch------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence             223344556 7788888888877642      23344556667778888888877  21    2334455566888888


Q ss_pred             eeccCCC---ccchHHHHhCCCCCceEEEeeccccccccccccc----CCccccceEEEec-cCc-----CCCccccCCC
Q 042184          141 IRPQNGN---GKDLCVLIANLENLENLIVLMKSKEEVLDLQSLS----NPPQYLQRLYFKG-DMK-----KLPDWIFKPK  207 (261)
Q Consensus       141 l~~~~~~---~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~~L~~L~l~~-~l~-----~l~~~~~~~~  207 (261)
                      ++++...   ...+...+..+++|++|++++|.+.+........    ..+ .|+.|++.+ .++     .+...+..++
T Consensus       200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~~~~  278 (319)
T cd00116         200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI-SLLTLSLSCNDITDDGAKDLAEVLAEKE  278 (319)
T ss_pred             ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC-CceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence            8762211   1223455667778888888888665321111011    134 788888887 664     3334455567


Q ss_pred             cccEEEeccCCCCCChh----HHhccC-CcccceEec-cc
Q 042184          208 NVIRLGLDLSGLTEDPI----RVLHAL-PNLLQLRLA-GT  241 (261)
Q Consensus       208 ~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~-n~  241 (261)
                      +|+++++++|.+++...    ..+... +.|+.+++. |.
T Consensus       279 ~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         279 SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            88888888888876532    233444 677777776 54

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.65  E-value=5.6e-16  Score=145.86  Aligned_cols=53  Identities=23%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             ccceEEEec--cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          186 YLQRLYFKG--DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       186 ~L~~L~l~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +|+.|++++  .+..+|..++.+++|+.|++++|...+.++..+ .+++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls  833 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS  833 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence            455555554  233556555666666666666654333333222 34444444444

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=5.4e-18  Score=121.06  Aligned_cols=157  Identities=23%  Similarity=0.274  Sum_probs=142.1

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +-++.+++.|.++.|.++.+|+.++.+.+|++|++.+|+++++|..++.+++|+.|++..|.+..+|.+++.+|.|+.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            44677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN  163 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  163 (261)
                      +.+|++.+         ..+|..+..+..|+.|.+++| ...+|..++++++|+.|.+..  +..-.+|..++.+..|+.
T Consensus       109 ltynnl~e---------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd--ndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen  109 LTYNNLNE---------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD--NDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             cccccccc---------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc--CchhhCcHHHHHHHHHHH
Confidence            99999854         478888888999999999999 777888999999999999987  444568999999999999


Q ss_pred             EEEeecccc
Q 042184          164 LIVLMKSKE  172 (261)
Q Consensus       164 L~l~~n~~~  172 (261)
                      |.+.+|++.
T Consensus       178 lhiqgnrl~  186 (264)
T KOG0617|consen  178 LHIQGNRLT  186 (264)
T ss_pred             Hhcccceee
Confidence            999998765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=4.9e-18  Score=148.08  Aligned_cols=125  Identities=21%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             ccCCCCCCeEecccc-chHHH-HHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184          108 FGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ  185 (261)
Q Consensus       108 ~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  185 (261)
                      +...++|+.|++++| ...+| +.+.++..|++|++++  +.-..+|..+..++.|++|....|.+... |  .+..+| 
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P--e~~~l~-  452 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHSNQLLSF-P--ELAQLP-  452 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcCCceeec-h--hhhhcC-
Confidence            334444555555544 22222 2344444455555544  22233444444455555554444443321 1  244455 


Q ss_pred             ccceEEEec-cCc--CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          186 YLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       186 ~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +|+.+|++. +++  .++..... ++|++||+++|.-..-....+..++++..+++.
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT  508 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecc
Confidence            555555555 444  22221111 555555555554332223344444455555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=3e-17  Score=143.25  Aligned_cols=227  Identities=21%  Similarity=0.254  Sum_probs=170.0

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (261)
                      .+|++++++.+.+..+|.++..|.+|+.+....|+++.+|..+....+|++|.+..|.+..+|+....+..|++|++..|
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            46788888888888888878888888888888888887777777788888888888888877777777788888888877


Q ss_pred             ecccC----chhhhh----------hhhhcCC-cccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccch
Q 042184           89 YFTSG----SSIAEE----------AAAKLHP-GFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDL  151 (261)
Q Consensus        89 ~~~~~----~~~~~~----------~~~~l~~-~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  151 (261)
                      ++...    +.+.+.          ....+|. .=...+.|+.|.+.+|  .+.....+-..++|+.|++++  +....+
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy--NrL~~f  398 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY--NRLNSF  398 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc--cccccC
Confidence            65432    000000          1111111 1113456888888888  666667788999999999998  333334


Q ss_pred             H-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhcc
Q 042184          152 C-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA  229 (261)
Q Consensus       152 ~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  229 (261)
                      | ..+.+++.|++|++++|.+... + ..+..++ .|++|.... .+..+| .+..++.|+.+|++.|+++.........
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~L-p-~tva~~~-~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTL-P-DTVANLG-RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhh-h-HHHHhhh-hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            4 4577899999999999988744 3 3477788 999999988 888999 6888999999999999988754444344


Q ss_pred             CCcccceEec-cc
Q 042184          230 LPNLLQLRLA-GT  241 (261)
Q Consensus       230 ~~~L~~L~l~-n~  241 (261)
                      -|+|++||++ |.
T Consensus       475 ~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNT  487 (1081)
T ss_pred             CcccceeeccCCc
Confidence            4899999999 75

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1.3e-15  Score=135.24  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceE
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR  237 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  237 (261)
                      .+|+.|++++|.+.+...     ..+ +|+.|++++ .++.+|..   ..+|+.|++++|.++ .+|..+.++++|+.++
T Consensus       382 ~~L~~LdLs~N~Lt~LP~-----l~s-~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPV-----LPS-ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             cccceEEecCCcccCCCC-----ccc-CCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            357777777776653211     123 778888887 77777653   346777888888877 4566788889999999


Q ss_pred             ec-cccccee
Q 042184          238 LA-GTYNYEL  246 (261)
Q Consensus       238 l~-n~~~~~~  246 (261)
                      ++ |.+++..
T Consensus       452 Ls~N~Ls~~~  461 (788)
T PRK15387        452 LEGNPLSERT  461 (788)
T ss_pred             CCCCCCCchH
Confidence            99 8887553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=6e-16  Score=137.87  Aligned_cols=205  Identities=17%  Similarity=0.215  Sum_probs=121.8

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (261)
                      ++++.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence            468888888888888776554  578888888888887776543  468888888888777776553  46778888777


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHh-------------------ccccccEEEeeccCCCc
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELM-------------------KLRQLRKLSIRPQNGNG  148 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~  148 (261)
                      +++           .+|..+.  ++|+.|++++| ...++..+.                   ..++|+.|++.+  +..
T Consensus       273 ~L~-----------~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~--N~L  337 (754)
T PRK15370        273 KIS-----------CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE--NAL  337 (754)
T ss_pred             ccC-----------ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccC--Ccc
Confidence            554           3444332  36777777776 222222111                   113455555544  111


Q ss_pred             cchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC---hh
Q 042184          149 KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED---PI  224 (261)
Q Consensus       149 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~---~~  224 (261)
                      ..+|..+.  ++|+.|++++|.+.. .+ ..+  .+ +|+.|++++ .++.+|..+.  ..|+.|++++|.+...   ++
T Consensus       338 t~LP~~l~--~sL~~L~Ls~N~L~~-LP-~~l--p~-~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~  408 (754)
T PRK15370        338 TSLPASLP--PELQVLDVSKNQITV-LP-ETL--PP-TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLP  408 (754)
T ss_pred             ccCChhhc--CcccEEECCCCCCCc-CC-hhh--cC-CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHH
Confidence            22333332  466666666665542 22 111  13 667777766 6666665443  3566777777766532   22


Q ss_pred             HHhccCCcccceEec-cccc
Q 042184          225 RVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       225 ~~~~~~~~L~~L~l~-n~~~  243 (261)
                      .....++++..+++. |+++
T Consensus       409 ~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        409 HFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHhhcCCCccEEEeeCCCcc
Confidence            233445778888888 8775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=2.1e-15  Score=134.48  Aligned_cols=139  Identities=18%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (261)
                      .+...|++++++++.+|..+.  ++++.|++++|.++.+|..+.  .+|++|++++|.++.+|..+.  ++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            356789999999998887654  579999999999999887654  699999999999998887654  47999999999


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEe
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL  167 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  167 (261)
                      .++           .+|..+.  .+|+.|++++| ...+|..+.  ++|+.|+++++ . ...+|..+.  ++|+.|+++
T Consensus       252 ~L~-----------~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~-Lt~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        252 RIT-----------ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-S-IRTLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             ccC-----------cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-c-cccCcccch--hhHHHHHhc
Confidence            664           4555543  47999999988 444555443  58999999872 2 222332221  245555555


Q ss_pred             ecccc
Q 042184          168 MKSKE  172 (261)
Q Consensus       168 ~n~~~  172 (261)
                      +|.+.
T Consensus       313 ~N~Lt  317 (754)
T PRK15370        313 SNSLT  317 (754)
T ss_pred             CCccc
Confidence            55443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=7.9e-15  Score=118.71  Aligned_cols=207  Identities=18%  Similarity=0.151  Sum_probs=154.9

Q ss_pred             cCcccccEEEecCCCceecc--cccCCCCCCcEEeCCCCccc---ccchHhhccccccceeccceecccCchhhhhhhhh
Q 042184           29 GSLLNLHYLSLRNKKVKIIP--KSIGNLLGLESLDLKNTLVR---ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAK  103 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  103 (261)
                      +++.+|+...+.++.+...+  .....|++++.|+++.|-++   .+...+..+|+|+.|+++.|.+.-       ....
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------~~~s  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------FISS  190 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-------Cccc
Confidence            47889999999998887665  35678999999999999877   445566789999999999998742       1111


Q ss_pred             cCCcccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccc
Q 042184          104 LHPGFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSL  180 (261)
Q Consensus       104 l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  180 (261)
                      ...  ..+++|+.|.++.|   ...+...+..+|+|..|++.++. ..........-+..|+.|++++|.+.........
T Consensus       191 ~~~--~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~  267 (505)
T KOG3207|consen  191 NTT--LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKV  267 (505)
T ss_pred             cch--hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCccccccccccc
Confidence            111  25678999999999   44556668889999999998832 2222222344567899999999988866655668


Q ss_pred             cCCccccceEEEec-cCc--CCCcc-----ccCCCcccEEEeccCCCCCC-hhHHhccCCcccceEec-cccccee
Q 042184          181 SNPPQYLQRLYFKG-DMK--KLPDW-----IFKPKNVIRLGLDLSGLTED-PIRVLHALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       181 ~~~~~~L~~L~l~~-~l~--~l~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~-n~~~~~~  246 (261)
                      ..+| .|..|.++. .++  .+|+.     ...+++|++|++..|.+.+. ....+..+++|+.|.+. |+++-+.
T Consensus       268 ~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  268 GTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            8899 999999998 877  34443     34589999999999998653 23455678899999988 8886544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=1.1e-14  Score=114.73  Aligned_cols=235  Identities=16%  Similarity=0.149  Sum_probs=171.0

Q ss_pred             ccCccccceeecCCCCCC-----CCcccccCcccccEEEecCC---Cce-ecccc-------cCCCCCCcEEeCCCCccc
Q 042184            5 IANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNK---KVK-IIPKS-------IGNLLGLESLDLKNTLVR   68 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~---~i~-~~~~~-------l~~l~~L~~L~l~~~~~~   68 (261)
                      +..+..++++++++|.|.     .+-+.+.+.++|+..++++-   +.. ++|+.       +..+++|++|+|++|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            345677899999999888     24466777889999999863   222 56653       456789999999999887


Q ss_pred             -ccc----hHhhccccccceeccceecccCchhhhhhhhh------cCCcccCCCCCCeEecccc-----c-hHHHHHHh
Q 042184           69 -ELP----VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAK------LHPGFGSLTNLQKLCIIEA-----D-SEVLKELM  131 (261)
Q Consensus        69 -~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------l~~~~~~~~~L~~L~l~~~-----~-~~~~~~l~  131 (261)
                       ..+    ..+..+.+|++|.+.+|.+...   +...+..      .....++-++|+.+....|     . ......+.
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence             333    3456789999999999987542   1111111      3345667788999999998     1 23455688


Q ss_pred             ccccccEEEeeccCCCc---cchHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CC
Q 042184          132 KLRQLRKLSIRPQNGNG---KDLCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KL  199 (261)
Q Consensus       132 ~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l  199 (261)
                      ..+.|+.+.+..+....   ......+..+++|+.|++.+|.++..-.   ...+..+| +|+.|++++ .+.     .+
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHH
Confidence            88999999998732222   2345678899999999999998764322   14577888 999999998 765     23


Q ss_pred             Ccccc-CCCcccEEEeccCCCCCChh----HHhccCCcccceEec-cccc
Q 042184          200 PDWIF-KPKNVIRLGLDLSGLTEDPI----RVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       200 ~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ...+. ..|+|+.|.+.+|.++....    .++...|.|..|+++ |.+.
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            33333 37999999999999986432    345678999999999 9883

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.49  E-value=1.2e-15  Score=121.96  Aligned_cols=87  Identities=18%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                      -++.+++|+++++++|.+....+ ..|.+.. .++.|.|.. .+..+... +..+..|+.|++.+|+++...+-.+....
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIED-GAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHhhcccceEeccCCCccchhhh-hhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            35566677777777776665444 4466666 666666666 55533322 34466666666666666654444555566


Q ss_pred             cccceEec-ccc
Q 042184          232 NLLQLRLA-GTY  242 (261)
Q Consensus       232 ~L~~L~l~-n~~  242 (261)
                      .|..|++- |++
T Consensus       347 ~l~~l~l~~Np~  358 (498)
T KOG4237|consen  347 SLSTLNLLSNPF  358 (498)
T ss_pred             eeeeeehccCcc
Confidence            66666665 554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=1.2e-13  Score=122.84  Aligned_cols=189  Identities=19%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             ccccceeecCCCCCCCCcccccCc-----------------ccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc
Q 042184            8 FKLMKVLDLEDAPVVYLPEGVGSL-----------------LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL   70 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~~~~~l-----------------~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~   70 (261)
                      .++|++|++++|.++.+|.....+                 .+|+.|++++|.++.+|..   .++|++|++++|.+..+
T Consensus       241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~L  317 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL  317 (788)
T ss_pred             CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccC
Confidence            478888888888887666432111                 2344455555555544432   36788888888777755


Q ss_pred             chHhhc----------------c-ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhc
Q 042184           71 PVEIRN----------------L-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMK  132 (261)
Q Consensus        71 ~~~~~~----------------l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~  132 (261)
                      |.....                + .+|+.|++++|+++           .+|..   ..+|+.|++++| ...++..   
T Consensus       318 p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-----------~LP~l---p~~L~~L~Ls~N~L~~LP~l---  380 (788)
T PRK15387        318 PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-----------SLPTL---PSELYKLWAYNNRLTSLPAL---  380 (788)
T ss_pred             CCCcccccccccccCccccccccccccceEecCCCccC-----------CCCCC---CcccceehhhccccccCccc---
Confidence            431110                0 13555555555433           23321   134555555555 2223321   


Q ss_pred             cccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccE
Q 042184          133 LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIR  211 (261)
Q Consensus       133 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~  211 (261)
                      ..+|+.|++++  +....+|.   ..++|+.|++++|.+.+. +     .++.+|+.|++++ .++.+|..+..+++|+.
T Consensus       381 ~~~L~~LdLs~--N~Lt~LP~---l~s~L~~LdLS~N~LssI-P-----~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~  449 (788)
T PRK15387        381 PSGLKELIVSG--NRLTSLPV---LPSELKELMVSGNRLTSL-P-----MLPSGLLSLSVYRNQLTRLPESLIHLSSETT  449 (788)
T ss_pred             ccccceEEecC--CcccCCCC---cccCCCEEEccCCcCCCC-C-----cchhhhhhhhhccCcccccChHHhhccCCCe
Confidence            24688888877  22223443   236799999999987643 3     1233899999999 99999999999999999


Q ss_pred             EEeccCCCCCChhHHh
Q 042184          212 LGLDLSGLTEDPIRVL  227 (261)
Q Consensus       212 L~l~~~~~~~~~~~~~  227 (261)
                      |++++|.+++..+..+
T Consensus       450 LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        450 VNLEGNPLSERTLQAL  465 (788)
T ss_pred             EECCCCCCCchHHHHH
Confidence            9999999998766655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=7e-15  Score=117.71  Aligned_cols=227  Identities=17%  Similarity=0.198  Sum_probs=142.4

Q ss_pred             cceeecCCCCCCCCc-ccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCC-Ccccccch-Hhhccccccceecc
Q 042184           11 MKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKN-TLVRELPV-EIRNLKKLRYLMVY   86 (261)
Q Consensus        11 L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~   86 (261)
                      -.++.++.|+|+.+| ..|+.+++|++|+|+.|.|+ .-|+.+.++.++..|.+.+ |.|+.+|. .+..+..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            456788888888777 56778888888888888888 5666778888887777776 67777765 35667777777776


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHH-HHhccccccEEEeeccC------CCc-----c----
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLK-ELMKLRQLRKLSIRPQN------GNG-----K----  149 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~-~l~~~~~L~~L~l~~~~------~~~-----~----  149 (261)
                      -|++.-          .....+..++++..|.+.+| ...++. .+..+.+++++.+..+.      ..+     .    
T Consensus       149 an~i~C----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  149 ANHINC----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             hhhhcc----------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            665431          22345666666666666666 333333 34444455544443200      000     0    


Q ss_pred             -------chH-------------HHHh-CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCC
Q 042184          150 -------DLC-------------VLIA-NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKP  206 (261)
Q Consensus       150 -------~~~-------------~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~  206 (261)
                             ..|             ..+. +...+..--.+.+.....-|...|..+| +|++|++++ .++.+.+ ++...
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcch
Confidence                   000             0000 0011111111112222233434588899 999999999 8986654 57778


Q ss_pred             CcccEEEeccCCCCCChhHHhccCCcccceEec-ccccceeeE
Q 042184          207 KNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYELFH  248 (261)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~~~  248 (261)
                      ..++.|.+..|++...-..++.++..|+.|++. |.++--.+.
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            999999999998875445577889999999999 988644443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=8.4e-13  Score=97.32  Aligned_cols=128  Identities=22%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             ccCccccceeecCCCCCCCCccccc-CcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHh-hccccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVG-SLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEI-RNLKKLRY   82 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~   82 (261)
                      +.++.++++|++.+|.|+.+. .++ .+.+|+.|++++|.++.+. .+..++.|++|++++|.++.+...+ ..+|+|++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            446667899999999998664 344 5789999999999999774 5778999999999999999886655 46899999


Q ss_pred             eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-----chHHHHHHhccccccEEEeec
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      |++++|++..        . .--..+..+++|+.|++.+|     .....-.+..+|+|+.|+-..
T Consensus        93 L~L~~N~I~~--------l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   93 LYLSNNKISD--------L-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EE-TTS---S--------C-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             EECcCCcCCC--------h-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            9999997752        2 22356677888999999888     222334567777777776544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.7e-13  Score=106.26  Aligned_cols=175  Identities=17%  Similarity=0.106  Sum_probs=100.6

Q ss_pred             ccceeecCCCCCC--CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCc-cc--ccchHhhccccccce
Q 042184           10 LMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTL-VR--ELPVEIRNLKKLRYL   83 (261)
Q Consensus        10 ~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L   83 (261)
                      .|++||+++..++  .+-..++.|.+|+.|.+.++++. .+-..+++-.+|+.|+++.+. ++  ...-.+..|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3667777777666  44455566777777777777766 555556666777777777654 55  222345667777777


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-----chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                      ++++|.++..      .......+  --++|+.|+++++     ...+.-...++|++.+|+++++..........+.++
T Consensus       266 NlsWc~l~~~------~Vtv~V~h--ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf  337 (419)
T KOG2120|consen  266 NLSWCFLFTE------KVTVAVAH--ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF  337 (419)
T ss_pred             CchHhhccch------hhhHHHhh--hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence            7777765431      11111111  1245777777766     222333355667777777776555555666667777


Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEe
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFK  193 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  193 (261)
                      +.|+++.++.|+......+-.+...| .|.+|++.
T Consensus       338 ~~L~~lSlsRCY~i~p~~~~~l~s~p-sl~yLdv~  371 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDIIPETLLELNSKP-SLVYLDVF  371 (419)
T ss_pred             chheeeehhhhcCCChHHeeeeccCc-ceEEEEec
Confidence            77777777776553222222233444 44444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.29  E-value=1.6e-12  Score=117.92  Aligned_cols=221  Identities=29%  Similarity=0.317  Sum_probs=112.6

Q ss_pred             ccccceeecCCCC--CCCCc-ccccCcccccEEEecCCC-ceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            8 FKLMKVLDLEDAP--VVYLP-EGVGSLLNLHYLSLRNKK-VKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         8 ~~~L~~L~l~~~~--l~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      +++|++|-+..+.  +..++ +.|..++.|++||+++|. +.++|+.++.+.+|++|+++++.+..+|.++.++.+|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            3455555555553  33333 234456666666666554 4466666666666666666666666666666666666666


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccC--------------
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQN--------------  145 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~--------------  145 (261)
                      ++..+...          ...+.....+.+|+.|.+...    .......+..+.+|+.+......              
T Consensus       624 nl~~~~~l----------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  624 NLEVTGRL----------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR  693 (889)
T ss_pred             cccccccc----------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence            66655321          122333334555666655443    22333334444444444433210              


Q ss_pred             ----------CCccchHHHHhCCCCCceEEEeecccccccc----cccccC-CccccceEEEec-cCcCCCccccCCCcc
Q 042184          146 ----------GNGKDLCVLIANLENLENLIVLMKSKEEVLD----LQSLSN-PPQYLQRLYFKG-DMKKLPDWIFKPKNV  209 (261)
Q Consensus       146 ----------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~-~~~~L~~L~l~~-~l~~l~~~~~~~~~L  209 (261)
                                ......+..+..+.+|+.|.+.++.......    ...... ++ ++..+...+ ..-..+.+..-.++|
T Consensus       694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~~f~~~L  772 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTWLLFAPHL  772 (889)
T ss_pred             HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccchhhccCcc
Confidence                      1112233445566778888887776542111    001111 33 333333333 333444444456788


Q ss_pred             cEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          210 IRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +.|.+..|...+.+......+..++.+.+.
T Consensus       773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~  802 (889)
T KOG4658|consen  773 TSLSLVSCRLLEDIIPKLKALLELKELILP  802 (889)
T ss_pred             cEEEEecccccccCCCHHHHhhhcccEEec
Confidence            888888887666555555555555544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1e-13  Score=115.88  Aligned_cols=173  Identities=24%  Similarity=0.320  Sum_probs=79.5

Q ss_pred             cccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccC
Q 042184           31 LLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS  110 (261)
Q Consensus        31 l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~  110 (261)
                      +..-...+++.|++.++|..+..+..|+.+.++.|.+..+|..++++..|++++++.|++           ..+|..++.
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-----------S~lp~~lC~  142 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-----------SHLPDGLCD  142 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-----------hcCChhhhc
Confidence            333444444445544444444444444444455444444444444555555555555422           234444444


Q ss_pred             CCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccce
Q 042184          111 LTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR  189 (261)
Q Consensus       111 ~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  189 (261)
                      ++ |+.|.+++| ...+|..++..+.|.+|+.+.  +....+|..++.+.+|+.+.+..|.+....+  .+..+|  |.+
T Consensus       143 lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~--nei~slpsql~~l~slr~l~vrRn~l~~lp~--El~~Lp--Li~  215 (722)
T KOG0532|consen  143 LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK--NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--ELCSLP--LIR  215 (722)
T ss_pred             Cc-ceeEEEecCccccCCcccccchhHHHhhhhh--hhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--HHhCCc--eee
Confidence            44 444444444 333444444444444444443  2222344444444445555444444432211  233443  555


Q ss_pred             EEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          190 LYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       190 L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      ||+++ .+..+|..+..+..|+.|-|.+|.+..
T Consensus       216 lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  216 LDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             eecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            55555 455555555555555555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.1e-13  Score=110.63  Aligned_cols=206  Identities=17%  Similarity=0.164  Sum_probs=141.5

Q ss_pred             cCccccceeecCCCCCCCCc--ccccCcccccEEEecCCCce---ecccccCCCCCCcEEeCCCCccccc-c-hHhhccc
Q 042184            6 ANFKLMKVLDLEDAPVVYLP--EGVGSLLNLHYLSLRNKKVK---IIPKSIGNLLGLESLDLKNTLVREL-P-VEIRNLK   78 (261)
Q Consensus         6 ~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~l~   78 (261)
                      .++++|+++.+.++.+...+  .....|++++.|+++.|-+.   .+-.....+++|+.|+++.|.+... . ..-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            36778888999988777433  45567899999999988765   3444567889999999999887622 1 1223577


Q ss_pred             cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEeccccc--hHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184           79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEAD--SEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA  156 (261)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  156 (261)
                      .|+.|.++.|.++.         .++...+..+|+|+.|.+..|.  .........+..|+.|++++++..........+
T Consensus       198 ~lK~L~l~~CGls~---------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~  268 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSW---------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG  268 (505)
T ss_pred             hhheEEeccCCCCH---------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence            88999999998853         3455566678888899888871  111222344567888888884333333334567


Q ss_pred             CCCCCceEEEeeccccccccc-----ccccCCccccceEEEec-cCcCCCc--cccCCCcccEEEeccCCCCC
Q 042184          157 NLENLENLIVLMKSKEEVLDL-----QSLSNPPQYLQRLYFKG-DMKKLPD--WIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       157 ~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~~~L~~L~l~~-~l~~l~~--~~~~~~~L~~L~l~~~~~~~  221 (261)
                      .++.|..|.++.+.+.+....     +....+| +|+.|.+.. ++.+++.  .+...++|+.|.+..|.++.
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccc-cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888888888888876543221     1245677 899999988 8865554  24457788888888887754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=3.8e-13  Score=112.52  Aligned_cols=191  Identities=25%  Similarity=0.275  Sum_probs=161.6

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   89 (261)
                      .-...|++.|.+..+|..+..+..|..+.++.|.+..+|..+.++..|.+++++.|++..+|..++.++ |+.|.+++|+
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            345578899999999999988999999999999999999999999999999999999999999999888 9999999996


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM  168 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  168 (261)
                      ++           .+|..++..+.|..|+.+.| ...++..++.+.+|+.|.+..  +....+|..+..++ |.+||+++
T Consensus       155 l~-----------~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR--n~l~~lp~El~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  155 LT-----------SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR--NHLEDLPEELCSLP-LIRLDFSC  220 (722)
T ss_pred             cc-----------cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh--hhhhhCCHHHhCCc-eeeeeccc
Confidence            54           78999998899999999999 888999999999999999887  55567888888665 89999999


Q ss_pred             cccccccccccccCCccccceEEEec-cCcCCCcccc---CCCcccEEEeccCC
Q 042184          169 KSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF---KPKNVIRLGLDLSG  218 (261)
Q Consensus       169 n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~---~~~~L~~L~l~~~~  218 (261)
                      |.+. .+|+ .|..+. +|++|-|.+ .+..-|..+.   ...-.++|+...|+
T Consensus       221 Nkis-~iPv-~fr~m~-~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  221 NKIS-YLPV-DFRKMR-HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Ccee-ecch-hhhhhh-hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            9876 4454 377888 999999999 8876555443   34456777777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.6e-11  Score=103.70  Aligned_cols=192  Identities=26%  Similarity=0.316  Sum_probs=129.4

Q ss_pred             eecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCC-CCcEEeCCCCcccccchHhhccccccceeccceeccc
Q 042184           14 LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLL-GLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS   92 (261)
Q Consensus        14 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   92 (261)
                      ++...+.+......+..++.++.|++.++.++.++....... +|+.|++++|.+..++..+..+++|+.|+++.|++  
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--
Confidence            455555543333334455677888888888777777666663 78888888888777766777788888888888744  


Q ss_pred             CchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccc
Q 042184           93 GSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSK  171 (261)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  171 (261)
                               .+++...+..+.|+.|.++++ ...++........|+.+.+.+  +.....+..+..+.++..+.+.+|..
T Consensus       176 ---------~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~--N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         176 ---------SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN--NSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ---------hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC--CcceecchhhhhcccccccccCCcee
Confidence                     356665557777888888877 555665555666677777766  32334555666777777777776655


Q ss_pred             ccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184          172 EEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      ... + ..+..++ +++.|++.+ .++.++. ++...+++.|+++++.+++.
T Consensus       245 ~~~-~-~~~~~l~-~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         245 EDL-P-ESIGNLS-NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             eec-c-chhcccc-ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence            432 1 2355666 788888887 7777766 66777888888888776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=4.7e-12  Score=100.13  Aligned_cols=214  Identities=19%  Similarity=0.204  Sum_probs=153.8

Q ss_pred             ccccCcccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc----ccch-------Hhhccccccceecccee
Q 042184           26 EGVGSLLNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR----ELPV-------EIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        26 ~~~~~l~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~~-------~~~~l~~L~~L~l~~~~   89 (261)
                      +.......++.+++++|.+.     .+...+.+.++|+..++++--..    .+|.       .+..+|+|+++++|.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34456788999999999987     34455677889999999864222    4443       34578899999999998


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc--c----hHH---------HHHHhccccccEEEeecc---CCCccch
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--D----SEV---------LKELMKLRQLRKLSIRPQ---NGNGKDL  151 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~----~~~---------~~~l~~~~~L~~L~l~~~---~~~~~~~  151 (261)
                      +...      .+..+...+.++..|++|.+.+|  .    ..+         ....+..+.|+++....+   +.....+
T Consensus       104 ~G~~------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  104 FGPK------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             cCcc------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence            8764      45556667778999999999999  1    111         122344578888887762   1223345


Q ss_pred             HHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CCCccccCCCcccEEEeccCCCCCC
Q 042184          152 CVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KLPDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       152 ~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      ...+...+.|+.+.++.|.+...--   ...+..+| +|++|++++ -++     .+...+...+.|+.|.+++|.+...
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~  256 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE  256 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence            5677888999999999997653211   24577888 999999998 555     3444556678999999999998875


Q ss_pred             hhHH----h-ccCCcccceEec-cccccee
Q 042184          223 PIRV----L-HALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       223 ~~~~----~-~~~~~L~~L~l~-n~~~~~~  246 (261)
                      ....    + ...|+|+++++. |.++.+.
T Consensus       257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  257 GAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             cHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            4332    2 348999999999 9887654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=1.2e-11  Score=104.47  Aligned_cols=176  Identities=27%  Similarity=0.386  Sum_probs=145.5

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcc-cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLL-NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      +...+.++.+++.++.+..++....... +|+.|++++|.+..+|..++.+++|+.|++++|++..++......++|+.|
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            4455789999999999999988877775 999999999999988777899999999999999999998877789999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      ++++|+++           .+|........|+.+.++++ ....+..+..+.++..+.+.+  +.....+..++.+++++
T Consensus       192 ~ls~N~i~-----------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~--n~~~~~~~~~~~l~~l~  258 (394)
T COG4886         192 DLSGNKIS-----------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN--NKLEDLPESIGNLSNLE  258 (394)
T ss_pred             eccCCccc-----------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC--ceeeeccchhccccccc
Confidence            99999654           66666566667999999998 667777888888888888655  44444467788888999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCc
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK  197 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~  197 (261)
                      .|++++|.+.....   +..+. +++.|++++ .+.
T Consensus       259 ~L~~s~n~i~~i~~---~~~~~-~l~~L~~s~n~~~  290 (394)
T COG4886         259 TLDLSNNQISSISS---LGSLT-NLRELDLSGNSLS  290 (394)
T ss_pred             eecccccccccccc---ccccC-ccCEEeccCcccc
Confidence            99999998764433   66677 899999988 655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=9.2e-12  Score=97.04  Aligned_cols=128  Identities=23%  Similarity=0.290  Sum_probs=67.3

Q ss_pred             CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhcc
Q 042184           55 LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKL  133 (261)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~  133 (261)
                      .-|+++|+++|.++.+.....-.|.++.|++++|.++           .+ ..++.+++|+.|++++| ......+-.++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-----------~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL  351 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-----------TV-QNLAELPQLQLLDLSGNLLAECVGWHLKL  351 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEecccccee-----------ee-hhhhhcccceEeecccchhHhhhhhHhhh
Confidence            4455666666665555555555566666666665443           11 22455556666666665 44444444555


Q ss_pred             ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcC
Q 042184          134 RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK  198 (261)
Q Consensus       134 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~  198 (261)
                      .++++|.+++  +..+ -...++++.+|..||+.+|.+.....+..++.+| +|+.+.+.+ .+..
T Consensus       352 GNIKtL~La~--N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  352 GNIKTLKLAQ--NKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG  413 (490)
T ss_pred             cCEeeeehhh--hhHh-hhhhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence            5555665554  2222 2234555555666666666555444444455555 555555555 4443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=4.5e-12  Score=98.46  Aligned_cols=195  Identities=16%  Similarity=0.079  Sum_probs=102.5

Q ss_pred             ccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184           32 LNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF  108 (261)
Q Consensus        32 ~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  108 (261)
                      +.|+++|++...++  .+-..++.|.+|+.|.+.++++. .+...+..-.+|+.++++.++--        ....+.-.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~--------t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF--------TENALQLLL  256 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------chhHHHHHH
Confidence            34666666666655  33344556666666666666655 55555666666666666655311        111222345


Q ss_pred             cCCCCCCeEecccc---chHHHHHHhc-cccccEEEeec--cCCCccchHHHHhCCCCCceEEEeecccccccccccccC
Q 042184          109 GSLTNLQKLCIIEA---DSEVLKELMK-LRQLRKLSIRP--QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN  182 (261)
Q Consensus       109 ~~~~~L~~L~l~~~---~~~~~~~l~~-~~~L~~L~l~~--~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  182 (261)
                      .+|+.|..|++++|   ...+...+.. -+.|..|+++|  .+.....+......++++.+||+++|......-+..+-.
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            56667777777776   2222222222 25666666766  222222333344567777777777764443322234556


Q ss_pred             CccccceEEEec--cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184          183 PPQYLQRLYFKG--DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ  235 (261)
Q Consensus       183 ~~~~L~~L~l~~--~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  235 (261)
                      ++ .|++|.++.  .+. +-.-.+...|.|.+|+..+|--.....-....+++|+.
T Consensus       337 f~-~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  337 FN-YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             cc-hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            66 777777765  332 22123555677777777776433222222334555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=7e-11  Score=87.18  Aligned_cols=101  Identities=31%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184           30 SLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF  108 (261)
Q Consensus        30 ~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  108 (261)
                      +..+++.|++.+|.|+.+. .++ .+.+|++|++++|.++.+. ++..+++|++|++++|.++           .+...+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-----------~i~~~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-----------SISEGL   83 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS--------------S-CHHH
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-----------ccccch
Confidence            4456788888888877653 344 5778888888888887664 4667788888888888554           333222


Q ss_pred             -cCCCCCCeEecccc---chHHHHHHhccccccEEEeec
Q 042184          109 -GSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus       109 -~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~  143 (261)
                       ..+++|+.|.+++|   .......+..+++|+.|++.+
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence             24566677766666   111223444555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=1.3e-10  Score=90.50  Aligned_cols=38  Identities=18%  Similarity=0.259  Sum_probs=18.1

Q ss_pred             cccccEEEecCCCce---ecccccCCCCCCcEEeCCCCccc
Q 042184           31 LLNLHYLSLRNKKVK---IIPKSIGNLLGLESLDLKNTLVR   68 (261)
Q Consensus        31 l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~l~~~~~~   68 (261)
                      +++++.+++.+|.|+   ++...+..+|.|++|+++.|++.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            444555555555444   33333444555555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.5e-11  Score=94.38  Aligned_cols=195  Identities=16%  Similarity=0.152  Sum_probs=98.6

Q ss_pred             ccEEEecCCCceeccc--cc-CCCCCCcEEeCCCCccc---ccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184           34 LHYLSLRNKKVKIIPK--SI-GNLLGLESLDLKNTLVR---ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG  107 (261)
Q Consensus        34 L~~L~l~~~~i~~~~~--~l-~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~  107 (261)
                      +..+.+.++.|....+  .+ ..+..++.+|+.+|.++   ++...+.++|.|+.|+++.|++..       .+..+|  
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-------~I~~lp--  117 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-------DIKSLP--  117 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-------ccccCc--
Confidence            3344555554442221  12 24566777777777766   344455667777777777776654       444444  


Q ss_pred             ccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccC--------CCcc--------------------chHHHHh
Q 042184          108 FGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQN--------GNGK--------------------DLCVLIA  156 (261)
Q Consensus       108 ~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~--------~~~~--------------------~~~~~l~  156 (261)
                       ....+|+.|.+.+.   +...-..+..+|.++.|+++.++        ...+                    .....-.
T Consensus       118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r  196 (418)
T KOG2982|consen  118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR  196 (418)
T ss_pred             -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence             23456667766665   33344445555555555444310        0000                    1111122


Q ss_pred             CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCC--ccccCCCcccEEEeccCCCCCChhH------Hh
Q 042184          157 NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLP--DWIFKPKNVIRLGLDLSGLTEDPIR------VL  227 (261)
Q Consensus       157 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~------~~  227 (261)
                      -++++..+.+..|++.+...-.....+| .+.-|.|+. ++..+.  +.+.+++.|+.|.++.+.+.+....      .+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p-~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI  275 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFP-SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI  275 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCC-cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence            3455556666555444333323344555 555666655 555332  2244566666666666665542211      23


Q ss_pred             ccCCcccceEec
Q 042184          228 HALPNLLQLRLA  239 (261)
Q Consensus       228 ~~~~~L~~L~l~  239 (261)
                      +.+++++.|+=+
T Consensus       276 aRL~~v~vLNGs  287 (418)
T KOG2982|consen  276 ARLTKVQVLNGS  287 (418)
T ss_pred             eeccceEEecCc
Confidence            556666666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=5.5e-11  Score=92.77  Aligned_cols=130  Identities=22%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184           32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL  111 (261)
Q Consensus        32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (261)
                      +.|+.+++++|.|+.+.+++.-.|.++.|+++.|.+..+.. +..+++|+.|++++|.++           .+...=..+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-----------~~~Gwh~KL  351 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-----------ECVGWHLKL  351 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-----------hhhhhHhhh
Confidence            44556666666666555555555666666666666555433 555666666666666443           122222234


Q ss_pred             CCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccc
Q 042184          112 TNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEE  173 (261)
Q Consensus       112 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  173 (261)
                      .++++|.++.|.-...+.+.++-+|..|++.+++...-+-...++++|.|+++.+.+|++..
T Consensus       352 GNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            45566666655223334556666666666665222111223456677777777777776543

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.5e-09  Score=95.12  Aligned_cols=100  Identities=22%  Similarity=0.343  Sum_probs=57.2

Q ss_pred             ccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184           34 LHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL  111 (261)
Q Consensus        34 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (261)
                      ++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++          .+|..++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg----------~iP~~l~~L  489 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG----------SIPESLGQL  489 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC----------CCchHHhcC
Confidence            555666666655 55555666666666666666655 555556666666666666665543          455556666


Q ss_pred             CCCCeEecccc--chHHHHHHhcc-ccccEEEeec
Q 042184          112 TNLQKLCIIEA--DSEVLKELMKL-RQLRKLSIRP  143 (261)
Q Consensus       112 ~~L~~L~l~~~--~~~~~~~l~~~-~~L~~L~l~~  143 (261)
                      ++|+.|++++|  .+.+|..+... .++..+++.+
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            66666666665  44455444432 2344455544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=2.1e-09  Score=98.03  Aligned_cols=198  Identities=25%  Similarity=0.297  Sum_probs=133.1

Q ss_pred             ccccceeecCCCCCCCCcccccCcccccEEEecCCC--ceecccc-cCCCCCCcEEeCCCCc-ccccchHhhccccccce
Q 042184            8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKK--VKIIPKS-IGNLLGLESLDLKNTL-VRELPVEIRNLKKLRYL   83 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~-l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L   83 (261)
                      ....+.+.+-++.+..++... .+++|+.|-+.+|.  +..++.. +..++.|++||+++|. +..+|..++.+-+|++|
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            345666777777666554432 45689999998886  5555543 6789999999999886 55999999999999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccC-CCccchHHHHhCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQN-GNGKDLCVLIANLEN  160 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~  160 (261)
                      +++++           .+..+|..+++++.|.+|++..+  ....+.....+++|++|.+.... .........+..+.+
T Consensus       601 ~L~~t-----------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  601 DLSDT-----------GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             cccCC-----------CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            99998           45689999999999999999887  33446667779999999998722 333344556666777


Q ss_pred             CceEEEeecccccccccccccCCc---cccceEEEec-cCcCCCccccCCCcccEEEeccCCCC
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPP---QYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT  220 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~---~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~  220 (261)
                      |+.+++......   -...+....   ...+.+.+.+ .....+..+..+.+|+.|.+.+|...
T Consensus       670 L~~ls~~~~s~~---~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  670 LENLSITISSVL---LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhheeecchhH---hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            777776543220   001111122   1122233222 22344445566777777777777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=4.9e-09  Score=63.85  Aligned_cols=58  Identities=33%  Similarity=0.498  Sum_probs=32.3

Q ss_pred             cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCc
Q 042184            9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTL   66 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~   66 (261)
                      |+|++|++++|.+..++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34566666666555444 34455666666666666655333 245556666666665554

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.80  E-value=1.1e-09  Score=84.41  Aligned_cols=234  Identities=15%  Similarity=0.087  Sum_probs=150.4

Q ss_pred             CccccceeecCCCCCC-C----CcccccCcccccEEEecCCCc---e-eccc-------ccCCCCCCcEEeCCCCccc-c
Q 042184            7 NFKLMKVLDLEDAPVV-Y----LPEGVGSLLNLHYLSLRNKKV---K-IIPK-------SIGNLLGLESLDLKNTLVR-E   69 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~-~----~~~~~~~l~~L~~L~l~~~~i---~-~~~~-------~l~~l~~L~~L~l~~~~~~-~   69 (261)
                      .+..++.+++++|.|. +    +...+++-.+|++.++++-..   . ++++       .+.+||+|+.+++++|.+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            4567888999999888 2    445566678888888886432   2 4443       3467899999999999877 4


Q ss_pred             cch----HhhccccccceeccceecccCchhhhhhhh------hcCCcccCCCCCCeEecccc-----chH-HHHHHhcc
Q 042184           70 LPV----EIRNLKKLRYLMVYQYYFTSGSSIAEEAAA------KLHPGFGSLTNLQKLCIIEA-----DSE-VLKELMKL  133 (261)
Q Consensus        70 ~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~l~~~~~~~~~L~~L~l~~~-----~~~-~~~~l~~~  133 (261)
                      .|.    .++....|.+|.+++|.+.+   ++++.+.      ..-.-..+-|.|+......|     +.. ....+...
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp---~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCc---cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            443    45677889999999997643   3443443      12234456678999988887     222 22335555


Q ss_pred             ccccEEEeeccCCCccc----hHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CCC
Q 042184          134 RQLRKLSIRPQNGNGKD----LCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KLP  200 (261)
Q Consensus       134 ~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l~  200 (261)
                      ..|+.+.+..+....+.    ....+..+.+|+.||+.+|.++..-.   ...+..++ .|+.|.+.+ -++     .+.
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHH
Confidence            68888888762222221    12345677899999999997763211   13356677 788888876 443     222


Q ss_pred             cccc--CCCcccEEEeccCCCCCChhHH-----h--ccCCcccceEec-ccccc
Q 042184          201 DWIF--KPKNVIRLGLDLSGLTEDPIRV-----L--HALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       201 ~~~~--~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~-n~~~~  244 (261)
                      ..+.  ..|+|..|...+|...+.....     +  .++|-|..|.+. |.++.
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            2222  2678888888888766543221     1  357888888888 77754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=1e-09  Score=93.17  Aligned_cols=194  Identities=21%  Similarity=0.279  Sum_probs=114.3

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      .+..++.+.+..+.+..+-..+..+++|..+++.+|.+..+...+..+++|++|++++|.++.+. .+..++.|+.|+++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            34555566666666665434466778888888888888866554677888888888888887663 35666668888888


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHH-HhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL  164 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  164 (261)
                      +|.++.            ...+..++.|+.+++++| ....... ...+.+++.+.+.+  +... ....+.....+..+
T Consensus       149 ~N~i~~------------~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~--n~i~-~i~~~~~~~~l~~~  213 (414)
T KOG0531|consen  149 GNLISD------------ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG--NSIR-EIEGLDLLKKLVLL  213 (414)
T ss_pred             cCcchh------------ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC--Cchh-cccchHHHHHHHHh
Confidence            886641            233444777888888887 2222221 46667777777765  1111 11222233333344


Q ss_pred             EEeecccccccccccccCCccc--cceEEEec-cCcCCCccccCCCcccEEEeccCCCC
Q 042184          165 IVLMKSKEEVLDLQSLSNPPQY--LQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT  220 (261)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~~~--L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~  220 (261)
                      ++..|.+....+   +...+ .  |+.+++.+ .+...+..+..+..+..+++..+++.
T Consensus       214 ~l~~n~i~~~~~---l~~~~-~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  214 SLLDNKISKLEG---LNELV-MLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hcccccceeccC---cccch-hHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            555554433222   11222 2  56666666 56555444555666666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=1.2e-08  Score=62.10  Aligned_cols=58  Identities=41%  Similarity=0.555  Sum_probs=49.2

Q ss_pred             ccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccc-hHhhccccccceecccee
Q 042184           32 LNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        32 ~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~   89 (261)
                      ++|++|++++|+++.+|. .+..+++|++|++++|.+..++ ..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999997774 5788999999999999998664 467889999999999885

...

>PLN03150 hypothetical protein; Provisional

Probab=98.65  E-value=3.9e-08  Score=87.58  Aligned_cols=103  Identities=20%  Similarity=0.422  Sum_probs=90.7

Q ss_pred             ccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceecc
Q 042184           10 LMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus        10 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~   86 (261)
                      .++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999998 88899999999999999999998 89989999999999999999998 889999999999999999


Q ss_pred             ceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA  122 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~  122 (261)
                      +|++++          .+|..+... .++..+++.+|
T Consensus       499 ~N~l~g----------~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSLSG----------RVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccc----------cCChHHhhccccCceEEecCC
Confidence            998876          566666543 45678888877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=8.5e-09  Score=87.65  Aligned_cols=219  Identities=21%  Similarity=0.257  Sum_probs=131.1

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      .+..+++|+.+++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|.+..+.. +..+++|+.+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLL  167 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence            367789999999999999977665778999999999999999763 46778889999999999986643 5558999999


Q ss_pred             eccceecccCchhhhhhhhhcCCc-ccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCC--C
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE--N  160 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~  160 (261)
                      ++++|.+.           .+... ...+.+++.+.+.++.......+.....+..+++.. +....  ...+....  .
T Consensus       168 ~l~~n~i~-----------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~-n~i~~--~~~l~~~~~~~  233 (414)
T KOG0531|consen  168 DLSYNRIV-----------DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLD-NKISK--LEGLNELVMLH  233 (414)
T ss_pred             cCCcchhh-----------hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccc-cccee--ccCcccchhHH
Confidence            99999764           22221 567788999999888222222222222222223322 11000  01111112  2


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC--hhHH--hccCCcccc
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED--PIRV--LHALPNLLQ  235 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~  235 (261)
                      |+.+++++|++....  ..+..+. .+..+++.. .+..+.. +...+.+..+...++.+...  ....  ....+.++.
T Consensus       234 L~~l~l~~n~i~~~~--~~~~~~~-~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (414)
T KOG0531|consen  234 LRELYLSGNRISRSP--EGLENLK-NLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVT  309 (414)
T ss_pred             HHHHhcccCcccccc--ccccccc-cccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccc
Confidence            667777776554221  2244455 666666665 4443322 33344555555555544321  1111  234455555


Q ss_pred             eEec-ccc
Q 042184          236 LRLA-GTY  242 (261)
Q Consensus       236 L~l~-n~~  242 (261)
                      ..+. |+.
T Consensus       310 ~~~~~~~~  317 (414)
T KOG0531|consen  310 LTLELNPI  317 (414)
T ss_pred             cccccCcc
Confidence            5555 444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.50  E-value=1.1e-07  Score=73.62  Aligned_cols=216  Identities=16%  Similarity=0.154  Sum_probs=139.6

Q ss_pred             ccccCcccccEEEecCCCce-e----cccccCCCCCCcEEeCCCCccc----ccc-------hHhhccccccceecccee
Q 042184           26 EGVGSLLNLHYLSLRNKKVK-I----IPKSIGNLLGLESLDLKNTLVR----ELP-------VEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        26 ~~~~~l~~L~~L~l~~~~i~-~----~~~~l~~l~~L~~L~l~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~   89 (261)
                      ..+..+..+..+++++|.|. +    +...+.+-.+|+..++++-...    .++       +.+..||.|+.+++|.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            33445788999999999987 3    3344566788998888864322    233       345689999999999998


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc------chHHHHH---------HhccccccEEEeeccC---CCccch
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA------DSEVLKE---------LMKLRQLRKLSIRPQN---GNGKDL  151 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~------~~~~~~~---------l~~~~~L~~L~l~~~~---~~~~~~  151 (261)
                      +...      ....+...++..+.|++|.+++|      .+.+-..         ...-|.|+.+....+.   ......
T Consensus       104 fg~~------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~  177 (388)
T COG5238         104 FGSE------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS  177 (388)
T ss_pred             cCcc------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence            8653      34444556778889999999998      2222222         2233678888776511   111222


Q ss_pred             HHHHhCCCCCceEEEeecccccc--cc--cccccCCccccceEEEec-cCc-----CCCccccCCCcccEEEeccCCCCC
Q 042184          152 CVLIANLENLENLIVLMKSKEEV--LD--LQSLSNPPQYLQRLYFKG-DMK-----KLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       152 ~~~l~~~~~L~~L~l~~n~~~~~--~~--~~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      ...+..-.+|+.+.+..|.+...  ..  ...+..+. +|+.|++++ .++     -+...+..-+.|+.|.+.+|-++.
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            33455557899999999976532  11  12233445 899999998 555     222233334568999999998876


Q ss_pred             ChhHHh------ccCCcccceEec-ccccceeeE
Q 042184          222 DPIRVL------HALPNLLQLRLA-GTYNYELFH  248 (261)
Q Consensus       222 ~~~~~~------~~~~~L~~L~l~-n~~~~~~~~  248 (261)
                      .....+      ...|+|..|.+. |...+..+.
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence            544332      247888888888 777655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=8.7e-09  Score=83.83  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             ccceeecCCCC-CC--CCcccccCcccccEEEecCCC-ce-e-cccccCCCCCCcEEeCCCCc-cc--ccchHhhccccc
Q 042184           10 LMKVLDLEDAP-VV--YLPEGVGSLLNLHYLSLRNKK-VK-I-IPKSIGNLLGLESLDLKNTL-VR--ELPVEIRNLKKL   80 (261)
Q Consensus        10 ~L~~L~l~~~~-l~--~~~~~~~~l~~L~~L~l~~~~-i~-~-~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L   80 (261)
                      -|+.|.+.++. ..  .+-..-..+++++.|.+.++. ++ . .-..-..+++|++|++..|. ++  .+-.....|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            35666666662 22  222233456666666666654 33 1 11112356666666666643 33  111123346666


Q ss_pred             cceecccee
Q 042184           81 RYLMVYQYY   89 (261)
Q Consensus        81 ~~L~l~~~~   89 (261)
                      +++++++|.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.45  E-value=1.1e-08  Score=83.18  Aligned_cols=226  Identities=18%  Similarity=0.118  Sum_probs=140.4

Q ss_pred             ccCccccceeecCCC-CCC-CCcccc-cCcccccEEEecCCC-ce-eccc-ccCCCCCCcEEeCCCCc-cc--ccchHhh
Q 042184            5 IANFKLMKVLDLEDA-PVV-YLPEGV-GSLLNLHYLSLRNKK-VK-IIPK-SIGNLLGLESLDLKNTL-VR--ELPVEIR   75 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~-~l~-~~~~~~-~~l~~L~~L~l~~~~-i~-~~~~-~l~~l~~L~~L~l~~~~-~~--~~~~~~~   75 (261)
                      -.+||+++.|++.+| .++ ..-..+ ..|++|+.+++..|. ++ .... ....+++|++++++++. ++  .+.....
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r  239 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR  239 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence            357888888888888 444 222233 367888888888854 55 2222 33578888888888875 44  3333445


Q ss_pred             ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCCccch
Q 042184           76 NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGNGKDL  151 (261)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  151 (261)
                      .+..++.+...+|.-.        ....+...-+.+..+..+++..|    ...+...-..+..|+.+..+++.......
T Consensus       240 G~~~l~~~~~kGC~e~--------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~  311 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLEL--------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV  311 (483)
T ss_pred             cchhhhhhhhcccccc--------cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence            5666777766655211        12223333344555666666565    23344445567788888888755555555


Q ss_pred             HHHHh-CCCCCceEEEeeccccccccccccc-CCccccceEEEec-cC-c--CCCccccCCCcccEEEeccCC-CCCChh
Q 042184          152 CVLIA-NLENLENLIVLMKSKEEVLDLQSLS-NPPQYLQRLYFKG-DM-K--KLPDWIFKPKNVIRLGLDLSG-LTEDPI  224 (261)
Q Consensus       152 ~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~L~~L~l~~-~l-~--~l~~~~~~~~~L~~L~l~~~~-~~~~~~  224 (261)
                      ...++ .+.+|+.+.++++..-+...+..+. .++ +|+.+++.+ .. +  ++......|+.|+.++++.|. ++++..
T Consensus       312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi  390 (483)
T KOG4341|consen  312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI  390 (483)
T ss_pred             HHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence            55555 6789999999988644443333333 355 899998887 33 3  455545578999999999885 455433


Q ss_pred             HHh----ccCCcccceEec
Q 042184          225 RVL----HALPNLLQLRLA  239 (261)
Q Consensus       225 ~~~----~~~~~L~~L~l~  239 (261)
                      ..+    .....|+.+.+.
T Consensus       391 ~~l~~~~c~~~~l~~lEL~  409 (483)
T KOG4341|consen  391 RHLSSSSCSLEGLEVLELD  409 (483)
T ss_pred             hhhhhccccccccceeeec
Confidence            333    346788888888

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=3.2e-07  Score=51.43  Aligned_cols=37  Identities=35%  Similarity=0.590  Sum_probs=17.8

Q ss_pred             cccEEEecCCCceecccccCCCCCCcEEeCCCCcccc
Q 042184           33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE   69 (261)
Q Consensus        33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~   69 (261)
                      +|++|++++|.|+.+|..++++++|++|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            3455555555555444444555555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=4.4e-07  Score=50.86  Aligned_cols=40  Identities=33%  Similarity=0.460  Sum_probs=25.9

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecc
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP   48 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~   48 (261)
                      ++|++|++++|+|+++|..++.|++|+.|++++|+++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4567777777777766666677777777777777666443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.31  E-value=3.2e-07  Score=81.95  Aligned_cols=147  Identities=24%  Similarity=0.265  Sum_probs=77.9

Q ss_pred             ccccEEEecCCC-ce-eccccc-CCCCCCcEEeCCCCccc--ccchHhhccccccceeccceecccCchhhhhhhhhcCC
Q 042184           32 LNLHYLSLRNKK-VK-IIPKSI-GNLLGLESLDLKNTLVR--ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP  106 (261)
Q Consensus        32 ~~L~~L~l~~~~-i~-~~~~~l-~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  106 (261)
                      .+|+.|++++.. +. .=|..+ ..+|+|++|.+.+-.+.  .+.+...++|+|..||+|+++++           .+ .
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----------nl-~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----------NL-S  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----------Cc-H
Confidence            557777776643 22 111222 24577777777665544  33344556777777777776543           22 5


Q ss_pred             cccCCCCCCeEecccc---chHHHHHHhccccccEEEeecc-CCCccch----HHHHhCCCCCceEEEeecccccccccc
Q 042184          107 GFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQ-NGNGKDL----CVLIANLENLENLIVLMKSKEEVLDLQ  178 (261)
Q Consensus       107 ~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~  178 (261)
                      +++.+++|+.|.+.+-   .......+..+++|++|+++.. .......    ...-..+|+|+.||.++..+....--.
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            6666677777766554   3344455666777777777761 1111111    111224677777777776554332212


Q ss_pred             cccCCccccceEE
Q 042184          179 SLSNPPQYLQRLY  191 (261)
Q Consensus       179 ~~~~~~~~L~~L~  191 (261)
                      .+...| +|+.+.
T Consensus       270 ll~sH~-~L~~i~  281 (699)
T KOG3665|consen  270 LLNSHP-NLQQIA  281 (699)
T ss_pred             HHHhCc-cHhhhh
Confidence            233344 555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=5.9e-08  Score=67.40  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=69.3

Q ss_pred             ccceeecCCCCCCCCcccc---cCcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccchHhhccccccceec
Q 042184           10 LMKVLDLEDAPVVYLPEGV---GSLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV   85 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~---~~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l   85 (261)
                      .+..++++.|++..+++..   ....+|...++++|.+.+.|..+. +.+.++++++++|.+..+|..+..++.|+.|++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            4556777777766554433   345667777888888777776654 455788888888888888877888888888888


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      +.|.+.           ..|..+..+.++..|+..++
T Consensus       108 ~~N~l~-----------~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  108 RFNPLN-----------AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccCccc-----------cchHHHHHHHhHHHhcCCCC
Confidence            887553           44555555566666666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=1.2e-08  Score=88.63  Aligned_cols=123  Identities=20%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             CCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccc
Q 042184           56 GLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLR  134 (261)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~  134 (261)
                      .|.+.+.++|.+..+...+.-++.|+.|++++|+++.           +. .+..|++|++|++++| ...++..-..-.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-----------v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc  232 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-----------VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC  232 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-----------hH-HHHhcccccccccccchhccccccchhhh
Confidence            3445555555555444555555566666666665431           11 4555556666666655 222221111111


Q ss_pred             cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec
Q 042184          135 QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG  194 (261)
Q Consensus       135 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  194 (261)
                      .|+.|.+.+  +.. .-...+.++.+|+.||+++|-+.+...+..+..+. .|+.|+|.+
T Consensus       233 ~L~~L~lrn--N~l-~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeG  288 (1096)
T KOG1859|consen  233 KLQLLNLRN--NAL-TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEG  288 (1096)
T ss_pred             hheeeeecc--cHH-HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcC
Confidence            255555554  111 12234555556666666666544433333333444 555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=2.8e-08  Score=86.35  Aligned_cols=121  Identities=22%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   89 (261)
                      +|...++++|.+..+..++.-++.++.|+|+.|+++++. .+..+++|++||+++|++..+|..-..-.+|+.|++++|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence            355555566655545455555566666666666666443 4556666666666666666554421111226666666664


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHHhccccccEEEeec
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      ++            --..+.++.+|+.|++++|   ...-...+..+..|+.|.+.|
T Consensus       244 l~------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  244 LT------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             HH------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            42            1234455566666666666   222233345555566666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.20  E-value=9.2e-07  Score=79.10  Aligned_cols=123  Identities=24%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             CCCeEecccc---chHHHHHHh-ccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184          113 NLQKLCIIEA---DSEVLKELM-KLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ  188 (261)
Q Consensus       113 ~L~~L~l~~~---~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  188 (261)
                      +|+.|++++.   ....+..++ .+|+|+.|.+.+.....+++.+...++++|..||+++..+...   ..++.+. +|+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk-nLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK-NLQ  198 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc-cHH
Confidence            4555555554   222333322 3466666666553333334455555666666666666544322   2344555 566


Q ss_pred             eEEEec-cCcCCC--ccccCCCcccEEEeccCCCCCCh--h----HHhccCCcccceEec
Q 042184          189 RLYFKG-DMKKLP--DWIFKPKNVIRLGLDLSGLTEDP--I----RVLHALPNLLQLRLA  239 (261)
Q Consensus       189 ~L~l~~-~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~  239 (261)
                      +|.+.+ .+..-.  ..+..+.+|+.||+|........  .    +.-..+|+|+.||.+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            665555 444211  12344566666666555433221  1    111235566666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=2.4e-07  Score=64.41  Aligned_cols=102  Identities=13%  Similarity=0.148  Sum_probs=81.5

Q ss_pred             cccccEEEecCCCcee---cccccCCCCCCcEEeCCCCcccccchHhhc-cccccceeccceecccCchhhhhhhhhcCC
Q 042184           31 LLNLHYLSLRNKKVKI---IPKSIGNLLGLESLDLKNTLVRELPVEIRN-LKKLRYLMVYQYYFTSGSSIAEEAAAKLHP  106 (261)
Q Consensus        31 l~~L~~L~l~~~~i~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  106 (261)
                      -..+..+++++|++-.   .+..+.....|..+++++|.+..+|..+.. .+.++.+++++|           .+.++|.
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-----------eisdvPe   94 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-----------EISDVPE   94 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-----------hhhhchH
Confidence            3557778888987663   344566778899999999999988887764 568999999999           5568999


Q ss_pred             cccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184          107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus       107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      ++..++.|+.|++..| ....+..+..+.++..|+..+
T Consensus        95 E~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   95 ELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             HHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            9999999999999999 556667666687887887765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.07  E-value=3.6e-06  Score=62.46  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhc-cccccceecccee
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRN-LKKLRYLMVYQYY   89 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~   89 (261)
                      =+++++.+.++..+...-.-+.+...+++.+|.+..++ .+..++.|.+|.+++|.++.+.+.+.. +++|+.|.+.+|+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            34555555555433221113355667777777766543 356677788888888888866655554 5678888888876


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH----HHHHHhccccccEEEeec
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE----VLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~~~l~~~~~L~~L~l~~  143 (261)
                      +.        ..+++ ..+..||+|+.|.+-+| ...    ..-.+.++|+|+.|+...
T Consensus       100 i~--------~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 IQ--------ELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hh--------hhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            53        12222 34566777777777666 111    111245566666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=7.3e-06  Score=68.26  Aligned_cols=134  Identities=20%  Similarity=0.242  Sum_probs=79.2

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCC-ceecccccCCCCCCcEEeCCCC-cccccchHhhccccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKK-VKIIPKSIGNLLGLESLDLKNT-LVRELPVEIRNLKKLRY   82 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~   82 (261)
                      +..|+++++|++++|.++.+|. +  -.+|+.|.+++|. ++.+|+.+  ..+|++|.+++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            3457888899999888887772 2  1458888888754 55777654  357888888887 4555553      3666


Q ss_pred             eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                      |+++.+...        .+..+|.      .|+.|.+..+    ....+.  .-.++|+.|.+.++...  ..|..+.  
T Consensus       117 L~L~~n~~~--------~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i--~LP~~LP--  176 (426)
T PRK15386        117 LEIKGSATD--------SIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI--ILPEKLP--  176 (426)
T ss_pred             EEeCCCCCc--------ccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcc--cCccccc--
Confidence            666655432        2344554      3556655332    111110  12257888888763322  2232222  


Q ss_pred             CCCceEEEeec
Q 042184          159 ENLENLIVLMK  169 (261)
Q Consensus       159 ~~L~~L~l~~n  169 (261)
                      .+|++|+++.+
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            47888888765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.93  E-value=1.8e-05  Score=66.03  Aligned_cols=134  Identities=20%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCc-ccccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184           29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL-VRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG  107 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~  107 (261)
                      ..+.+++.|++++|.++.+|.   -..+|++|.+++|. ++.+|..+  .++|++|++++|..          +..+|. 
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~----------L~sLP~-  112 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPE----------ISGLPE-  112 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccc----------cccccc-
Confidence            346788888888887777772   12468888887754 45566544  24688888887731          223443 


Q ss_pred             ccCCCCCCeEecccc-chHHHHHHhcc-ccccEEEeeccC-CCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184          108 FGSLTNLQKLCIIEA-DSEVLKELMKL-RQLRKLSIRPQN-GNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP  184 (261)
Q Consensus       108 ~~~~~~L~~L~l~~~-~~~~~~~l~~~-~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  184 (261)
                           .|+.|.+..+ ...    +..+ ++|+.|.+.+.+ ......+..  -.++|++|++++|.... .+    ..+|
T Consensus       113 -----sLe~L~L~~n~~~~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP----~~LP  176 (426)
T PRK15386        113 -----SVRSLEIKGSATDS----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LP----EKLP  176 (426)
T ss_pred             -----ccceEEeCCCCCcc----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cc----cccc
Confidence                 4666666544 111    1112 245555553211 000011100  11467777777665331 11    2244


Q ss_pred             cccceEEEec
Q 042184          185 QYLQRLYFKG  194 (261)
Q Consensus       185 ~~L~~L~l~~  194 (261)
                      .+|+.|.++.
T Consensus       177 ~SLk~L~ls~  186 (426)
T PRK15386        177 ESLQSITLHI  186 (426)
T ss_pred             ccCcEEEecc
Confidence            4777777755

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.84  E-value=2.3e-05  Score=58.26  Aligned_cols=105  Identities=24%  Similarity=0.253  Sum_probs=80.0

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccc--hHhhccccccceecc
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELP--VEIRNLKKLRYLMVY   86 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~   86 (261)
                      ....+|+++|.+..++ .+..++.|..|.+++|+|+.+...+. -+++|.+|.+.+|.+.++.  ..+..||+|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4567888888877442 35678999999999999996666554 4688999999999988443  357789999999999


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      +|..+.       ....-...+..+|+|+.|++.+.
T Consensus       122 ~Npv~~-------k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEH-------KKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhc-------ccCceeEEEEecCcceEeehhhh
Confidence            986543       12122245778999999999887

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=5.7e-06  Score=64.52  Aligned_cols=79  Identities=19%  Similarity=0.174  Sum_probs=36.3

Q ss_pred             cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCC
Q 042184           33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT  112 (261)
Q Consensus        33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (261)
                      +.+.|++-+|.++++ ....+|+.|++|.|+-|.++.+. .+..|++|++|++..|.+..        + .-...+.+++
T Consensus        20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s--------l-dEL~YLknlp   88 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES--------L-DELEYLKNLP   88 (388)
T ss_pred             HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc--------H-HHHHHHhcCc
Confidence            344444444444432 11234555555555555555442 24455555555555554321        1 1112344555


Q ss_pred             CCCeEecccc
Q 042184          113 NLQKLCIIEA  122 (261)
Q Consensus       113 ~L~~L~l~~~  122 (261)
                      +|+.|++..|
T Consensus        89 sLr~LWL~EN   98 (388)
T KOG2123|consen   89 SLRTLWLDEN   98 (388)
T ss_pred             hhhhHhhccC
Confidence            5555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.56  E-value=4.4e-05  Score=58.99  Aligned_cols=104  Identities=21%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             CcccccEEEecCCCceecccccCCCCCCcEEeCCCC--ccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCC
Q 042184           30 SLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT--LVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP  106 (261)
Q Consensus        30 ~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  106 (261)
                      .+..|+.+++.+..++.+. .+-.+++|++|.++.|  ++. .+......+|+|++++++.|++.         +..-..
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---------~lstl~  110 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---------DLSTLR  110 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---------cccccc
Confidence            4566666666666655332 2446788888888888  444 44444556688888888888763         222333


Q ss_pred             cccCCCCCCeEecccc-----chHHHHHHhccccccEEEeec
Q 042184          107 GFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus       107 ~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      .+..+.+|..|++..|     ....-..+.-+++|+.|+-..
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            4556667777777777     222334455566666665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.54  E-value=1.8e-05  Score=68.64  Aligned_cols=106  Identities=21%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             ccccceeecCCC-CCCC--CcccccCcccccEEEecCC-C-ceec----ccccCCCCCCcEEeCCCCc-cc--ccchHhh
Q 042184            8 FKLMKVLDLEDA-PVVY--LPEGVGSLLNLHYLSLRNK-K-VKII----PKSIGNLLGLESLDLKNTL-VR--ELPVEIR   75 (261)
Q Consensus         8 ~~~L~~L~l~~~-~l~~--~~~~~~~l~~L~~L~l~~~-~-i~~~----~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~   75 (261)
                      ++.|+.+.+..+ .+..  +-.....+++|+.|+++++ . +...    ......+.+|+.|+++++. ++  .+.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555555 3332  2233344555555555542 1 1111    1122334555555555554 33  1111122


Q ss_pred             ccccccceecccee-cccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           76 NLKKLRYLMVYQYY-FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        76 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      .|++|+.|.+..|. ++.         ..+......++.|++|+++++
T Consensus       267 ~c~~L~~L~l~~c~~lt~---------~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTD---------EGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hCCCcceEccCCCCccch---------hHHHHHHHhcCcccEEeeecC
Confidence            25555555555443 221         122333344555555555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.35  E-value=5.1e-05  Score=65.79  Aligned_cols=126  Identities=24%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             cccccEEEecCCC-cee--cccccCCCCCCcEEeCCCC-c-ccc----cchHhhccccccceecccee-cccCchhhhhh
Q 042184           31 LLNLHYLSLRNKK-VKI--IPKSIGNLLGLESLDLKNT-L-VRE----LPVEIRNLKKLRYLMVYQYY-FTSGSSIAEEA  100 (261)
Q Consensus        31 l~~L~~L~l~~~~-i~~--~~~~l~~l~~L~~L~l~~~-~-~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~  100 (261)
                      ++.|+.+.+.++. +..  +-.....+++|+.|+++++ . +..    .......+++|+.++++++. .+.        
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd--------  258 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD--------  258 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--------
Confidence            4666666666553 332  2233445666777766652 1 111    11223345666666666665 221        


Q ss_pred             hhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCC-ccchHHHHhCCCCCceEE
Q 042184          101 AAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGN-GKDLCVLIANLENLENLI  165 (261)
Q Consensus       101 ~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~  165 (261)
                       ..+......|++|+.|.+..+    ...+......+++|+.|++.++... ...+.....++++++.+.
T Consensus       259 -~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  259 -IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             -hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence             111111222566666665555    2334444555666666666653322 122333333455555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=8.2e-05  Score=57.53  Aligned_cols=106  Identities=19%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             ccccceeecCCCCCCCCcccccCcccccEEEecCC--Cce-ecccccCCCCCCcEEeCCCCccccc--chHhhccccccc
Q 042184            8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNK--KVK-IIPKSIGNLLGLESLDLKNTLVREL--PVEIRNLKKLRY   82 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~--~i~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~   82 (261)
                      +.+|+.+++.++.++.+ ..+-.+++|+.|.++.|  ++. .++.....+++|+++++++|.+..+  -..+..+++|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            44566666666655522 22345789999999999  444 5544455679999999999987732  234667888999


Q ss_pred             eeccceecccCchhhhhhhhhc-CCcccCCCCCCeEecccc
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKL-HPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~  122 (261)
                      |++.+|.-+.        .... ...+.-+++|+.|+-...
T Consensus       121 Ldl~n~~~~~--------l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTN--------LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccc--------cccHHHHHHHHhhhhcccccccc
Confidence            9999986542        1110 123445567777765554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=1.5e-05  Score=62.23  Aligned_cols=107  Identities=21%  Similarity=0.188  Sum_probs=77.7

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc--hHhhcccccccee
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP--VEIRNLKKLRYLM   84 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~   84 (261)
                      ++.+.+.|++.+|++.++. .+.+++.|++|.|+-|.|+.+. .+..|.+|+.|.|..|.|..+.  ..+.++|+|+.|-
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3567888999999988553 2457899999999999998663 4678999999999999988553  3577899999999


Q ss_pred             ccceecccCchhhhhhhh-hcCCcccCCCCCCeEeccc
Q 042184           85 VYQYYFTSGSSIAEEAAA-KLHPGFGSLTNLQKLCIIE  121 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~  121 (261)
                      +..|..-+.      ... .-...+..+|+|++|+=..
T Consensus        95 L~ENPCc~~------ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   95 LDENPCCGE------AGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             hccCCcccc------cchhHHHHHHHHcccchhccCcc
Confidence            988865431      000 1112455677888876433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.00079  Score=47.27  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccccc-chHhhcccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVREL-PVEIRNLKK   79 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~   79 (261)
                      ..|.++++|+.+.+.. .+..+. ..+..+++|+.+.+.++ +..++. .+..+.+++.+.+.+ .+..+ ...+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4567777888887774 455443 45667777888877664 554433 356666777777765 33322 234555777


Q ss_pred             ccceeccce
Q 042184           80 LRYLMVYQY   88 (261)
Q Consensus        80 L~~L~l~~~   88 (261)
                      |+.+.+..+
T Consensus        83 l~~i~~~~~   91 (129)
T PF13306_consen   83 LKNIDIPSN   91 (129)
T ss_dssp             ECEEEETTT
T ss_pred             ccccccCcc
Confidence            777777543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.0018  Score=30.16  Aligned_cols=18  Identities=39%  Similarity=0.695  Sum_probs=9.2

Q ss_pred             ccEEEecCCCceeccccc
Q 042184           34 LHYLSLRNKKVKIIPKSI   51 (261)
Q Consensus        34 L~~L~l~~~~i~~~~~~l   51 (261)
                      |++|++++|+++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.07  E-value=0.0093  Score=41.74  Aligned_cols=104  Identities=11%  Similarity=0.098  Sum_probs=35.9

Q ss_pred             cccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184          107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ  185 (261)
Q Consensus       107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  185 (261)
                      .+..+.+|+.+.+... .......+..+++++.+.+..  .....-...+.++++++.+.+..+ .. ..+...+..++ 
T Consensus         7 ~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~-   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN-LK-SIGDNAFSNCT-   81 (129)
T ss_dssp             TTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST-T--EE-TTTTTT-T-
T ss_pred             HHhCCCCCCEEEECCCeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc-cc-ccccccccccc-
Confidence            3444455555555433 111112244444555555543  111111223445555666666431 11 11112344455 


Q ss_pred             ccceEEEeccCcCCCc-cccCCCcccEEEecc
Q 042184          186 YLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDL  216 (261)
Q Consensus       186 ~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~  216 (261)
                      +++.+.+..++..++. .+..+ +|+.+.+..
T Consensus        82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCccccEEchhhhcCC-CceEEEECC
Confidence            6666665443332222 23334 566665544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0033  Score=29.21  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=10.8

Q ss_pred             CCcEEeCCCCcccccchHh
Q 042184           56 GLESLDLKNTLVRELPVEI   74 (261)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~   74 (261)
                      +|++|++++|.++.+|..+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            3566666666655555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.63  E-value=0.00013  Score=62.81  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=17.2

Q ss_pred             CcccEEEeccCCCCCChh----HHhccCCcccceEec-ccc
Q 042184          207 KNVIRLGLDLSGLTEDPI----RVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~-n~~  242 (261)
                      +.++.++++.|.+++...    ..+..++.++.+.+. |.+
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            445555555555554322    223344555555555 444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.46  E-value=0.00028  Score=60.82  Aligned_cols=162  Identities=21%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             ccCccccceeecCCCCCC--CCc---ccccCc-ccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc-----
Q 042184            5 IANFKLMKVLDLEDAPVV--YLP---EGVGSL-LNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR-----   68 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~--~~~---~~~~~l-~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----   68 (261)
                      +...+.|..|++++|.+.  ...   ..+... ..+++|++..|.++     .+...+.....++.++++.|.+.     
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            445566666666666655  111   111111 34555666555544     23334445666666666666543     


Q ss_pred             ccchHhh----ccccccceeccceecccCchhhhhhhhhcCCcccCCCC-CCeEecccc--ch----HHHHHHhcc-ccc
Q 042184           69 ELPVEIR----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTN-LQKLCIIEA--DS----EVLKELMKL-RQL  136 (261)
Q Consensus        69 ~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~--~~----~~~~~l~~~-~~L  136 (261)
                      .++..+.    ...++++|++.+|..+..      ....+...+...+. +..+++..|  .+    .....+..+ +.+
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~------~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l  264 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSS------SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL  264 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChH------HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence            2223333    345566666666655431      12222233333333 444555555  11    122233333 444


Q ss_pred             cEEEeeccC---CCccchHHHHhCCCCCceEEEeecccc
Q 042184          137 RKLSIRPQN---GNGKDLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       137 ~~L~l~~~~---~~~~~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      +++++..+.   .........+..++.++.+.++.|.+.
T Consensus       265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            555554411   112233444455555666665555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.09  E-value=0.014  Score=25.22  Aligned_cols=8  Identities=38%  Similarity=0.484  Sum_probs=3.0

Q ss_pred             cEEEecCC
Q 042184           35 HYLSLRNK   42 (261)
Q Consensus        35 ~~L~l~~~   42 (261)
                      +.|++++|
T Consensus         4 ~~L~l~~n   11 (17)
T PF13504_consen    4 RTLDLSNN   11 (17)
T ss_dssp             SEEEETSS
T ss_pred             CEEECCCC
Confidence            33333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.36  E-value=0.0025  Score=48.92  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=71.0

Q ss_pred             CCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhh
Q 042184           23 YLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAA  101 (261)
Q Consensus        23 ~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  101 (261)
                      .+| ..++.....+.||++.|++..+...++.+..+..|+++.|.+...|.++.....++.++...|.           .
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-----------~  100 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-----------H  100 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-----------h
Confidence            344 4566778888899988887766666777788888899988888888888888888888888874           3


Q ss_pred             hhcCCcccCCCCCCeEecccc
Q 042184          102 AKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus       102 ~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ...|..+...++++.++..++
T Consensus       101 ~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen  101 SQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             hhCCccccccCCcchhhhccC
Confidence            478888888888888888776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.34  E-value=0.00089  Score=51.25  Aligned_cols=87  Identities=22%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +...+..+.||++.|.+..+-..++-++.+..|+++.|.+..+|..+..+..++.++++.|..+..|.+....+.+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            45566778888888877766666777788899999998888888888888888888888888888888888899999988


Q ss_pred             ccceecc
Q 042184           85 VYQYYFT   91 (261)
Q Consensus        85 l~~~~~~   91 (261)
                      .-.+.++
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.024  Score=42.62  Aligned_cols=81  Identities=17%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             CCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh-CCCCCceEEEeecccccccccccccCCccccce
Q 042184          113 NLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA-NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR  189 (261)
Q Consensus       113 ~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  189 (261)
                      .++.++-+++  .......+..++.++.|.+.++....+.-..-++ -.++|+.|++++|+..+...+..+..++ +|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-NLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-hhHH
Confidence            3555555554  4445555666666666666554333332233333 2456777777766555444444455555 6666


Q ss_pred             EEEec
Q 042184          190 LYFKG  194 (261)
Q Consensus       190 L~l~~  194 (261)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.60  E-value=0.037  Score=41.62  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             CCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHH
Q 042184           55 LGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKEL  130 (261)
Q Consensus        55 ~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l  130 (261)
                      ..++.++-+++.+. .-...+..++.++.|.+.+|.--+        ...+...-+-.++|+.|++++|   ++.....+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--------D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--------DWCLERLGGLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--------hHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence            34555666555554 223345555566666665554211        1111111113456667777666   55566666


Q ss_pred             hccccccEEEeec
Q 042184          131 MKLRQLRKLSIRP  143 (261)
Q Consensus       131 ~~~~~L~~L~l~~  143 (261)
                      .++++|+.|.+.+
T Consensus       173 ~~lknLr~L~l~~  185 (221)
T KOG3864|consen  173 LKLKNLRRLHLYD  185 (221)
T ss_pred             HHhhhhHHHHhcC
Confidence            6666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.82  E-value=0.021  Score=27.06  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=12.0

Q ss_pred             CCcccEEEeccCCCCCChhHHh
Q 042184          206 PKNVIRLGLDLSGLTEDPIRVL  227 (261)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~  227 (261)
                      +++|++|++++|.+++.....+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3567777777777665544443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.42  E-value=0.15  Score=24.46  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=11.1

Q ss_pred             CCCcEEeCCCCcccccchH
Q 042184           55 LGLESLDLKNTLVRELPVE   73 (261)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~~   73 (261)
                      ++|++|++++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666655543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.42  E-value=0.15  Score=24.46  Aligned_cols=19  Identities=37%  Similarity=0.510  Sum_probs=11.1

Q ss_pred             CCCcEEeCCCCcccccchH
Q 042184           55 LGLESLDLKNTLVRELPVE   73 (261)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~~   73 (261)
                      ++|++|++++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666655543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.29  E-value=0.27  Score=23.63  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=15.2

Q ss_pred             CCcccEEEeccC-CCCCChhHHh
Q 042184          206 PKNVIRLGLDLS-GLTEDPIRVL  227 (261)
Q Consensus       206 ~~~L~~L~l~~~-~~~~~~~~~~  227 (261)
                      |++|++|++++| .+++.....+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            578888888888 4676544443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.06  E-value=0.63  Score=22.87  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=14.9

Q ss_pred             CcccEEEeccCCCCCChhHHh
Q 042184          207 KNVIRLGLDLSGLTEDPIRVL  227 (261)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~  227 (261)
                      ++|++|++++|.+.+.....+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            468888888888876544433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.49  E-value=1.2  Score=21.48  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=7.9

Q ss_pred             ccceeecCCCCCCCCc
Q 042184           10 LMKVLDLEDAPVVYLP   25 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~   25 (261)
                      .|++|+.++|+++.+|
T Consensus         3 ~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        3 SLKELNVSNNQLTSLP   18 (26)
T ss_pred             ccceeecCCCccccCc
Confidence            3455555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 9e-14
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 16/211 (7%)

Query: 12  KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP 71
             L+L   P+   P+    L +L ++++    +  +P ++    GLE+L L    +R LP
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 72  VEIRNLKKLRYLMVYQYYFTSGSSIAEE-AAAKLHPGFGSLTNLQKLCIIEADSEVL-KE 129
             I +L +LR L +        + + E  A+         L NLQ L +       L   
Sbjct: 144 ASIASLNRLRELSI--RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 130 LMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVL--DLQSLSNPPQY 186
           +  L+ L+ L IR    +    L   I +L  LE L +   +            +     
Sbjct: 202 IANLQNLKSLKIR---NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP---- 254

Query: 187 LQRLYFKG--DMKKLPDWIFKPKNVIRLGLD 215
           L+RL  K   ++  LP  I +   + +L L 
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 29/178 (16%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSL--LNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
              AN    ++       +    + +          L LR+  +   P     L  L+ +
Sbjct: 50  WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHM 109

Query: 61  DLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120
            +    + ELP  ++    L  L +      + + +       L     SL  L++L I 
Sbjct: 110 TIDAAGLMELPDTMQQFAGLETLTL------ARNPLRA-----LPASIASLNRLRELSIR 158

Query: 121 E-----------ADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL 167
                       A ++   E   L  L+ L +      G  +  L A++ NL+NL  L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRL---EWTG--IRSLPASIANLQNLKSL 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 37/242 (15%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNL--LGLESL 60
             ++ ++     D       +      +  N    +   + +K     + +    G  +L
Sbjct: 30  DVLSQWQRHYNADRN---RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86

Query: 61  DLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120
           +L++  + + P +   L  L+++ +        + + E     L         L+ L + 
Sbjct: 87  ELRSVPLPQFPDQAFRLSHLQHMTI------DAAGLME-----LPDTMQQFAGLETLTLA 135

Query: 121 EADSEVL-KELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQS 179
                 L   +  L +LR+LSIR               L  L   +    +  E   L +
Sbjct: 136 RNPLRALPASIASLNRLRELSIRACP-----------ELTELPEPLASTDASGEHQGLVN 184

Query: 180 LSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238
                  LQ L  +   ++ LP  I   +N+  L +  S L+      +H LP L +L L
Sbjct: 185 -------LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL 236

Query: 239 AG 240
            G
Sbjct: 237 RG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 4   SIANFKLMKVLDLEDA-PVVYLPEGVGSLLNLHYLSLR-NKKVKIIPKSIGNLLGLESLD 61
                  +K L L+D   ++ LP  +  L  L  L LR    +  +P  I  L     + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 62  LKNTLVRELP 71
           +   L  +L 
Sbjct: 308 VPPHLQAQLD 317

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 23/250 (9%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLES 59
           NT+ +    +  LDL    + ++ E    S   L  L L  N  + +   ++     L+ 
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109

Query: 60  LDLKNTLVRELPVE-IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL- 117
           L    T +  +    + N K L  L +   + +S             P       L+ L 
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL----------PKGFPTEKLKVLD 159

Query: 118 ---CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEV 174
                I   S+  +++  L+Q   LS+     +   +     +    ++L         V
Sbjct: 160 FQNNAIHYLSK--EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 175 LDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLG-LDLSG--LTEDPIRVLHAL 230
           +     ++  Q L    F+  D + +   +F+    + +  ++L             H  
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 231 PNLLQLRLAG 240
             L +L L  
Sbjct: 278 SGLQELDLTA 287

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 44/264 (16%)

Query: 12  KVLDLEDAPVVYLPEGV---GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLKNTLV 67
            +   ED     +   V      +++  ++L ++    I   +     GL+ LDL  T +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 68  RELPVEIRNLKKLRYL--------MVYQYYFTSGSSIAE------EAAAKLHPG-FGSLT 112
            ELP  +  L  L+ L         + Q   ++  S+            +L  G   +L 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 113 NLQKLCI-------IEADSEVLKELMKLRQLR----KLSIRPQNGNGKDLCVLIANLENL 161
           NL++L +        +  +  L+ L  L+ L     +                      L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--------AFKECPQL 402

Query: 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKP-KNVIRLGLD---L 216
           E L  L  ++ +V D QS       L+ L      +    + +F     +  L L     
Sbjct: 403 ELLD-LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 217 SGLTEDPIRVLHALPNLLQLRLAG 240
                     L  L  L  L L+ 
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 46/267 (17%), Positives = 90/267 (33%), Gaps = 52/267 (19%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSLR--NKKVKIIPKSIGNLLGLESLDLKN---T 65
           K L L       L +    +  +L +LS++   K++++    + NL  L  LDL +    
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 66  LVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH---------------PGFGS 110
                 +++RNL  L+ L +      S  + A +   +L                  F +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 111 LTNLQKL-----CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI 165
           L  L+ L      +  +  ++   L  L+ L  L     N   K       +L+ L  L 
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHL-NLQ---GNHFPKGNIQKTNSLQTLGRL- 478

Query: 166 VLMKSKEEVLDLQS--LSNPPQY-------LQRLYFKG-DMKKLPDWIFKPKNVIRLGLD 215
                  E+L L    LS+  Q+       +  +      +           ++  + L+
Sbjct: 479 -------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS--HLKGIYLN 529

Query: 216 LSG--LTEDPIRVLHALPNLLQLRLAG 240
           L+   ++     +L  L     + L  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQ 556

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 43/302 (14%), Positives = 85/302 (28%), Gaps = 76/302 (25%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRN--------------------K 42
            S         +      + ++ + V  L  L    + N                    +
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 43  KVKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAA 101
           + K       NL  L  +++     + +LP  ++ L +++ + V      SG  + ++  
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-- 294

Query: 102 AKLHPGFGSLTNLQKLCIIEADS------EVLKELMKLRQLRKLSIRPQNGNGKDLCVLI 155
                        +K+ II           V   L K+++L  L       N   L   +
Sbjct: 295 ---WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL---YN--QLEGKL 346

Query: 156 ANLENLENLIVLM---------------KSKE-EVLDLQS--LSNPP--------QYLQR 189
               +   L  L                 +++ E L      L   P          +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 190 LYF---------KGDMKKLPDWIFKPKNVIRLGLDLSG--LTEDPIRVLHALPNLLQLRL 238
           + F           +   L    FK  NV    ++LS   +++ P  +      L  + L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSS--INLSNNQISKFPKELFSTGSPLSSINL 464

Query: 239 AG 240
            G
Sbjct: 465 MG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 27/234 (11%)

Query: 30  SLLNLHYLSLR-NKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY 88
              +L    +  + + K I KS    L    +   +  +  +   +  L KLR   +   
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

Query: 89  YFTSGSSIAEEAAAKLH---------PGFGSLTNLQKLCIIEAD--SEVLKELMKLRQLR 137
            F + +                      + +L +L  + +      +++   L  L +++
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 138 KLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQ-----SLSNPP-----QYL 187
            +++   N  G     L  + + L +  V    K +++ +      +          + L
Sbjct: 277 LINVA-CN-RGISGEQLKDDWQALADAPVG--EKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 188 QRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
             L      ++           +  L L  + +TE P         +  L  A 
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 40/240 (16%)

Query: 29  GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLKN-----TLVRELPVEIRNLKKLRY 82
            S   +  LSL        +P +IG L  LE L L +           P  I        
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 83  LMVYQYYFTSGSSIAEEAAAKL----------HPGFGSLTNLQKLCIIEAD--------S 124
               + ++   + +  +                P   S+    ++ + +          +
Sbjct: 138 KQKMRMHY-QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 125 EVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP 184
            V K +M+L +LR+  +    GN   +   I      EN     + K E L   +L +  
Sbjct: 197 FVSKAVMRLTKLRQFYM----GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-- 250

Query: 185 QYLQRLYFKGD--MKKLPDWIFKPKNVIRLGLD---LSGLTEDP--IRVLHALPNLLQLR 237
             L  +       + KLP ++     +  + +         +     + L   P   +++
Sbjct: 251 --LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLR-------NKKVKIIPKSIGNLLG 56
                  +  +DL        P    +   L    +R       N+ ++  P+ I     
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 57  LESLDLKNTLVRELPVEIRNLKKLRYL 83
           L  L + +  +R++  +I     +  L
Sbjct: 568 LTQLQIGSNDIRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 34/161 (21%)

Query: 24  LPEGVGSLLNLHYLSLRNKK-VKIIPKSIGNLLGLESLDLKN--------TLVRELPVEI 74
           L       +N+  ++L N +  K   +       L S++L            +++     
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 75  RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEAD------SEVLK 128
           +N   L  + +     T    ++++          +L  L  +     D      S+   
Sbjct: 485 KNTYLLTSIDLRFNKLT---KLSDDF------RATTLPYLVGI-----DLSYNSFSKFPT 530

Query: 129 ELMKLRQLRKLSIRPQ-----NGNGKDLCVLIANLENLENL 164
           + +    L+   IR Q     N   ++    I    +L  L
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 23/239 (9%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
           +++ N   ++ L L +  +  +   + +L  ++ L+L           + N+ GL  L +
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
             + V+++   I NL  L  L +                        SLT+L        
Sbjct: 163 TESKVKDVT-PIANLTDLYSLSLNYNQIED------------ISPLASLTSLHYFTAYVN 209

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLS 181
               +  +  + +L  L I     N   D    ++ L NL  L  L     ++ D+ ++ 
Sbjct: 210 QITDITPVANMTRLNSLKI---GNNKITD----LSPLANLSQLTWLEIGTNQISDINAVK 262

Query: 182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
           +  + L+ L    +       +     +  L L+ + L  + + V+  L NL  L L+ 
Sbjct: 263 DLTK-LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
             I     ++ L+L    +  +   + +L+ L  L +   K+  I  ++ NL  L  L L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
               + ++   + NL K+  L +   +  S                 ++T L  L + E+
Sbjct: 118 NEDNISDIS-PLANLTKMYSLNLGANHNLS-----------DLSPLSNMTGLNYLTVTES 165

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLS 181
             + +  +  L  L  LS+   N N  +D    I+ L +L +L        ++ D+  ++
Sbjct: 166 KVKDVTPIANLTDLYSLSL---NYNQIED----ISPLASLTSLHYFTAYVNQITDITPVA 218

Query: 182 NPPQYLQRLYF 192
           N  + L  L  
Sbjct: 219 NMTR-LNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 23/155 (14%)

Query: 14  LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE 73
           L    AP+  +      L       L+   V  +  +   L  +  L +    V  +   
Sbjct: 5   LATLPAPINQI-FPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ-G 61

Query: 74  IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKL 133
           I  L  L YL +     T                  +L  L  L I       +  L  L
Sbjct: 62  IEYLTNLEYLNLNGNQITD------------ISPLSNLVKLTNLYIGTNKITDISALQNL 109

Query: 134 RQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVL 167
             LR+L +   N +   D    I+ L NL  +  L
Sbjct: 110 TNLRELYL---NEDNISD----ISPLANLTKMYSL 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 27/239 (11%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
             + N   +  L+L    +  +   +  L +L  LS  N+   + P  + NL  LE LD+
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDI 184

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
            +  V ++   +  L  L  L+      +                 G LTNL +L +   
Sbjct: 185 SSNKVSDIS-VLAKLTNLESLIATNNQISD------------ITPLGILTNLDELSLNGN 231

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLS 181
             + +  L  L  L  L +     N   +    +A L  L  L  L     ++ ++  L+
Sbjct: 232 QLKDIGTLASLTNLTDLDL---ANNQISN----LAPLSGLTKLTELKLGANQISNISPLA 284

Query: 182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
                L  L    +  +    I   KN+  L L  + +++  I  + +L  L +L    
Sbjct: 285 GLTA-LTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 27/238 (11%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
           + +A    ++ L   +  +  +   +G L NL  LSL   ++K I  ++ +L  L  LDL
Sbjct: 193 SVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH------------PGFGS 110
            N  +  L   +  L KL  L +     ++ S +A      L                 +
Sbjct: 251 ANNQISNLA-PLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNENQLEDISPISN 307

Query: 111 LTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMK 169
           L NL  L +   +   +  +  L +L++L       N   D    +++L NL N+  L  
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFF---YNNKVSD----VSSLANLTNINWLSA 360

Query: 170 SKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRV 226
              ++ DL  L+N  + + +L          P       ++     +++G    P  +
Sbjct: 361 GHNQISDLTPLANLTR-ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 35/204 (17%), Positives = 59/204 (28%), Gaps = 31/204 (15%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
            +           L    V         L  +  L      +K I   +  L  L  ++ 
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINF 75

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
            N  + ++   ++NL KL  +++                        +LTNL  L +   
Sbjct: 76  SNNQLTDIT-PLKNLTKLVDILMNNNQIAD------------ITPLANLTNLTGLTLFNN 122

Query: 123 DSEVLKELMKLRQLRKLSIR-------PQNGNGKDLCVL--------IANLENLENLIVL 167
               +  L  L  L +L +                L  L        +  L NL  L  L
Sbjct: 123 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182

Query: 168 MKSKEEVLDLQSLSNPPQYLQRLY 191
             S  +V D+  L+     L+ L 
Sbjct: 183 DISSNKVSDISVLAKLTN-LESLI 205

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 6/105 (5%)

Query: 15  DLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSI--GNLLGLESLDLKNTLVRELPV 72
            + +  +        +   L  + LR  K+  +        L  L ++D+        P 
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 73  EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
           +  N  +L+   +       G+ I  +       G  +  +L +L
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 24  LPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83
             + +     L     RN ++K I K     L    +      +  +   I+ L KL+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 84  MVYQYYFTSGSSIAEEAAAKLH---------PGFGSLTNLQKLCIIEAD--SEVLKELMK 132
                 FT  +   +   A              + +L +L  + +      +++   L  
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 133 LRQLRKL--------SIRPQNGNGKDLCVLIANLENLENLIV---LMKSKEEVLDLQSLS 181
           L +L+ L        S      +   L         ++   +    ++       LQ + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 182 NPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
                L  L      ++ L         +  L LD + + E P         +  L  + 
Sbjct: 574 K----LGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 22/183 (12%), Positives = 54/183 (29%), Gaps = 29/183 (15%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGVGS------LLNLHYLSL-RNKKVKIIPKSIGNLLG 56
           +  +  +M  +D     +      +         +N   ++L  N+  K   +       
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 57  LESLDLKN--------TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF 108
           + ++ L N          ++      +N   L  + +     T   S++++         
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---SLSDDFR------A 749

Query: 109 GSLTNLQKLCI----IEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL 164
            +L  L  + +      +         +L+       R   GN + L      +    +L
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN-RILRQWPTGITTCPSL 808

Query: 165 IVL 167
           I L
Sbjct: 809 IQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/157 (8%), Positives = 39/157 (24%), Gaps = 30/157 (19%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGVGSLL-NLHYLSLRNKKVKIIPK--SIGNLLGLESL 60
           +      +  L L+   +  +PE   +    +  L   + K+K IP   +  ++  + S+
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 61  DLKNTLVRELPVEI------RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTN 113
           D     +      I              + +                       F + + 
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-----------FPTELFATGSP 698

Query: 114 LQKLCI---------IEADSEVLKELMKLRQLRKLSI 141
           +  + +           +             L  + +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 44/235 (18%), Positives = 75/235 (31%), Gaps = 24/235 (10%)

Query: 5   IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
              F      +L+   V         L ++  +   N  +K + + I  L  +  L L  
Sbjct: 17  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 74

Query: 65  TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS 124
             + ++   + NLK L +L + +      S                L  L+ L +     
Sbjct: 75  NKLTDIK-PLTNLKNLGWLFLDENKIKDLS------------SLKDLKKLKSLSLEHNGI 121

Query: 125 EVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNP 183
             +  L+ L QL  L +     N   D    I  L  L  L  L     ++ D+  L+  
Sbjct: 122 SDINGLVHLPQLESLYL---GNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGL 174

Query: 184 PQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238
            + LQ LY   +       +   KN+  L L        PI     L     ++ 
Sbjct: 175 TK-LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 24  LPEGVGSLLNLHYLSLRNKK--VKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKL 80
           +P  + +L  L++L +      V  IP +I  L  L  L +    +   +P  +  +K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 81  RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
             L        SG+         L P   SL NL  +
Sbjct: 128 VTLDFSYNAL-SGT---------LPPSISSLPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 24  LPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLR 81
                GS  N   + L +N     +   +G    L  LDL  N +   LP  +  LK L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 82  YLMVY 86
            L V 
Sbjct: 272 SLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 3   TSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESL 60
            +IA    +  L +    V   +P+ +  +  L  L    N     +P SI +L  L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 61  DL-KNTLVRELPVEIRNLKKL 80
               N +   +P    +  KL
Sbjct: 155 TFDGNRISGAIPDSYGSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 24  LPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLR 81
           +P    +L NL ++ L RN          G+    + + L KN+L  +L  ++   K L 
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 82  YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
            L +       G+         L  G   L  L  L
Sbjct: 248 GLDLRNNRI-YGT---------LPQGLTQLKFLHSL 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 53/252 (21%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLKNTLVRE 69
           ++L+L +  +  +       L +L  L L RN    I   +   L  L +L+L +  +  
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 70  LPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCI-------- 119
           +P      L KL+ L +      S           +    F  + +L++L +        
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIES-----------IPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 120 IEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQS 179
           I   +        L  LR L++             +  + NL  LI L     + LDL  
Sbjct: 176 ISEGA-----FEGLSNLRYLNL---AMC------NLREIPNLTPLIKL-----DELDLSG 216

Query: 180 --LSNPPQ-------YLQRLYFKG-DMKKLPDWIFKP-KNVIRLGLDLSGLTEDPIRVLH 228
             LS           +LQ+L+     ++ +    F   ++++ + L  + LT  P  +  
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 229 ALPNLLQLRLAG 240
            L +L ++ L  
Sbjct: 277 PLHHLERIHLHH 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
               A+   ++ L+L+   +  +   V     L  L L + K+  +     +  G+  + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 62  LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIE 121
           L+N  +  +   +R  + L +  +    F  G+         L   F     +Q +    
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTV---- 267

Query: 122 ADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLS 181
              + +K+L    +       P  G+    C         + LI L + +  +L  Q   
Sbjct: 268 -AKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 182 NPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
                          ++L            +            +V       + L    
Sbjct: 325 T--------------ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 43/255 (16%), Positives = 76/255 (29%), Gaps = 31/255 (12%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLES 59
             +   +  +  LD+    +  L   +   L  L  L+L  N+  ++  K+      L  
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 60  LDLKNTLVRELPVE-IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL- 117
           L L +  ++++        K L  L +        SS               L NLQ+L 
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDL---SHNGLSSTKLGT-------QVQLENLQELL 151

Query: 118 ---CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIAN-LENLENLIVLMKS--- 170
                I+A      ++     L+KL +   + N   +          +  L  L  +   
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLEL---SSN--QIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 171 -KEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRL-GLDLSG--LTEDPIR 225
               + +   L      ++ L      +    +  F       L  LDLS   L      
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 226 VLHALPNLLQLRLAG 240
               LP L    L  
Sbjct: 267 SFAWLPQLEYFFLEY 281

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 45/245 (18%)

Query: 12  KVLDLEDAPVVYLPEGVGSLLNLHYLSLR-NKKVKIIPKSIGNLLGLESLDL-KNTLVRE 69
           +V D     +  +P+ + +  N+  L+L  N+  ++   +      L SLD+  NT+ + 
Sbjct: 7   EVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 70  LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKL-----CIIEAD 123
            P   + L  L+ L +        + +++     L    F   TNL +L      I +  
Sbjct: 65  EPELCQKLPMLKVLNL------QHNELSQ-----LSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 124 SEVLKELMKLRQLR----KLS-IRPQNGNGKDLCVLIANLENLENLIV----LMKSKEEV 174
           +    +   L  L      LS  +               LENL+ L++    +   K E 
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLG---------TQVQLENLQELLLSNNKIQALKSEE 164

Query: 175 LDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPN 232
           LD+ + S+    L++L      +K+  P        +  L L+   L       L     
Sbjct: 165 LDIFANSS----LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 233 LLQLR 237
              +R
Sbjct: 221 NTSIR 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 58/259 (22%), Positives = 89/259 (34%), Gaps = 33/259 (12%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLES 59
           + S +NF  ++ LDL    +  + +     L +L  L L  N      P S   L  LE+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 60  LDLKNTLVRELPVE-IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL- 117
           L    T +  L    I  L  L+ L V   +  S          KL   F +LTNL  + 
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHS---------CKLPAYFSNLTNLVHVD 159

Query: 118 -------CIIEADSEVLKELMKLRQLRKLS------IRPQNGNGKDLCVLIANLENLENL 164
                   I   D + L+E  ++     +S      I+ Q   G  L      L    N 
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL----HELTLRGNF 215

Query: 165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKP-KNVIRLGLDLSG--LTE 221
                 K  + +L  L      L     + +++     I +   +V      L+      
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 222 DPIRVLHALPNLLQLRLAG 240
           D I   H L N+  + LAG
Sbjct: 276 DDIVKFHCLANVSAMSLAG 294

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 38/226 (16%)

Query: 33  NLHYLSLR-NKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQYYF 90
           +   + L  N    +   S  N   L+ LDL    +  +  +    L  L  L++     
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL----- 87

Query: 91  TSGSSIAEEAAAKLHPG-FGSLTNLQKL-----CIIEADSEVLKELMKLRQLR----KLS 140
            +G+ I         PG F  LT+L+ L      +   +S  + +L+ L++L      + 
Sbjct: 88  -TGNPIQS-----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 141 IRPQNGNGKDLCVLIANLENLENLI----VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-D 195
                          +NL NL ++      +        DLQ L   PQ    L      
Sbjct: 142 SCKLPA-------YFSNLTNLVHVDLSYNYIQTITVN--DLQFLRENPQVNLSLDMSLNP 192

Query: 196 MKKLPDWIFKPKNVIRLGLDLSGLTEDPIR-VLHALPNLLQLRLAG 240
           +  + D  F+   +  L L  +  + + ++  L  L  L   RL  
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 31  LLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYF 90
           + +L Y++L N  V  +   I     ++ L + N         I  L  L  L +     
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDV 100

Query: 91  TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNG 148
           TS             P    LT+L  L I  +  D  +L ++  L ++  + +   NG  
Sbjct: 101 TSDKI----------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS-YNGAI 149

Query: 149 KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLY 191
            D    I  L+ L  L  L    + V D + + + P+ L +LY
Sbjct: 150 TD----IMPLKTLPELKSLNIQFDGVHDYRGIEDFPK-LNQLY 187

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 44/238 (18%), Positives = 81/238 (34%), Gaps = 28/238 (11%)

Query: 5   IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
                    +    + V         L  +  LS     V  I   +  L  L  L+LK+
Sbjct: 15  DPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD 72

Query: 65  TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADS 124
             + +L   ++NL K+  L +      + S                L +++ L +     
Sbjct: 73  NQITDLA-PLKNLTKITELELSGNPLKNVS------------AIAGLQSIKTLDLTSTQI 119

Query: 125 EVLKELMKLRQLRKLSIRPQNGNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNP 183
             +  L  L  L+ L +   + N   +    I+ L  L NL  L     +V DL  L+N 
Sbjct: 120 TDVTPLAGLSNLQVLYL---DLNQITN----ISPLAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 184 PQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
            + L  L      +  +   +    N+I + L  + +++  +  L    NL  + L  
Sbjct: 173 SK-LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 49/254 (19%), Positives = 92/254 (36%), Gaps = 28/254 (11%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKS-IGNLLGLES 59
           +  +     ++VL L+ + +  +      SL +L +L L +  +  +  S  G L  L+ 
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 60  LDLKNTLVRELPV--EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
           L+L     + L V     NL  L+ L +        S I           F  LT+L +L
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--SEIRRID-------FAGLTSLNEL 153

Query: 118 -----CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE----NLIVLM 168
                 +    S+ LK +  +  L  L +       +    +++++  LE    NL    
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLT-LHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 169 KSKEEVL----DLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPI 224
            S   V      ++ L+     L    F  ++ KL  +I +   V      L+GL +   
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 225 RVLHALPNLLQLRL 238
                +  L ++  
Sbjct: 272 SESDVVSELGKVET 285

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 34/245 (13%), Positives = 83/245 (33%), Gaps = 18/245 (7%)

Query: 12  KVLDLEDAPVVYLPEG--VGSLLNLHYLSL--RNKKVKIIPKSIGNLLGLESLDLKNTLV 67
           K L+L   P   L       +L NL  L +       +I       L  L  L++K   +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 68  RELPVE-IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEV 126
           R    + +++++ + +L ++         I  +  + +   +  L +        +   V
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR--YLELRDTNLARFQFSPLPV 218

Query: 127 LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ- 185
            +    +++L        + +  +L  L+  +  L  +     +   + D     +    
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 186 --------YLQRLYFKG-DMKKLPDWIFKP-KNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235
                    ++RL+     +      ++   + V R+ ++ S +   P      L +L  
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 236 LRLAG 240
           L L+ 
Sbjct: 339 LDLSE 343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 24  LPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLR 81
           +P+ +  +  L  L L    +   IP  + N   L  + L  N L  E+P  I  L+ L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 82  YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
            L +    F SG+         +    G   +L  L
Sbjct: 518 ILKLSNNSF-SGN---------IPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 3   TSIANFKLMKVLDL-------EDAPVVYLPEGVGSLLNLHYLSL-RNKKVKIIPKSIGNL 54
            +  N   M  LD+              +P+ +GS+  L  L+L  N     IP  +G+L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGY------IPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 55  LGLESLDL-KNTLVRELPVEIRNLKKLRYL 83
            GL  LDL  N L   +P  +  L  L  +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 24  LPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL-KNTLVRELP--VEIRNLKKL 80
           +   + SL  L  L L N  +            L SLDL +N+L   +     + +   L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 81  RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL 117
           ++L V          +          G   L +L+ L
Sbjct: 129 KFLNVSSNTLDFPGKV---------SGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 53/250 (21%), Positives = 84/250 (33%), Gaps = 56/250 (22%)

Query: 29  GSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLRYLMVY 86
           G    L +L +   K+     ++I     L+ L++  N  V  +P     LK L+YL + 
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 87  QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEAD--SEVLKELMKLRQLRKLSIRPQ 144
           +  FT    I +          G+   L  L +        V         L  L++   
Sbjct: 278 ENKFT--GEIPDFL-------SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 145 NGNGKDLCVLIANLENLENL--------------IVLMKSKEEVLDLQS----------- 179
           N +G+     +  +  L+ L              +  + +    LDL S           
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 180 LSNPPQYLQRLY-----FKGDMKKLPDWIFKPKNVIRLGLD---LSGLTEDPI-RVLHAL 230
             NP   LQ LY     F G   K+P  +     ++ L L    LSG     I   L +L
Sbjct: 389 CQNPKNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSG----TIPSSLGSL 441

Query: 231 PNLLQLRLAG 240
             L  L+L  
Sbjct: 442 SKLRDLKLWL 451

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 53/252 (21%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLKNTLVRE 69
           + L+L +  +  +       L +L  L L RN   +I   +   L  L +L+L +  +  
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137

Query: 70  LPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCI-------- 119
           +P      L KLR L +      S           +    F  + +L +L +        
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIES-----------IPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 120 IEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQS 179
           I   +        L  L+ L++             I ++ NL  L+ L     E L++  
Sbjct: 187 ISEGA-----FEGLFNLKYLNL---GMC------NIKDMPNLTPLVGL-----EELEMSG 227

Query: 180 --LSNPPQY-------LQRLYFKG-DMKKLPDWIFKP-KNVIRLGLDLSGLTEDPIRVLH 228
                           L++L+     +  +    F    +++ L L  + L+  P  +  
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 229 ALPNLLQLRLAG 240
            L  L++L L  
Sbjct: 288 PLRYLVELHLHH 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 42/259 (16%)

Query: 12  KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP 71
             L L    +  LP+ +     +  L +    +  +P+   +   LE LD  +  +  LP
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTLP 116

Query: 72  VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKEL- 130
               +LK L    V     T            L      L  +       AD+  L  L 
Sbjct: 117 ELPASLKHLD---VDNNQLTM-----------LPELPALLEYI------NADNNQLTMLP 156

Query: 131 MKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV----LMKSKEEVLDLQSLSNPPQY 186
                L  LS+     N   L  L    E+LE L V    L       +         + 
Sbjct: 157 ELPTSLEVLSV---RNN--QLTFLPELPESLEALDVSTNLLESLPAVPVRNHHS---EET 208

Query: 187 LQRLYFKG-DMKKLPDWIFKPKNVIRLGLD---LSGLTEDPIRVLHALPNLLQLRLAGTY 242
                 +   +  +P+ I        + L+   LS    + +    A P+    R+  + 
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 243 NYELFHFEAENWKLGLARF 261
           +    +         +  +
Sbjct: 269 SDGQQNTLHRPLADAVTAW 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLD 61
               A+   ++ L+L+   +  +   V     L  L L + K+  +     +  G+  + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 62  LKNTLVRELPVEIRNLKKLRYL 83
           L+N  +  +   +R  + L + 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 12  KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP 71
           K LDL    + ++     S   + ++SLRN K+ +I K++     LE  DL+        
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 72  VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELM 131
           +     K  R   V +      +   EE          +L +    C  +  +     L+
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEE-----ECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 132 KLRQL 136
            L   
Sbjct: 309 ALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 33/250 (13%), Positives = 73/250 (29%), Gaps = 46/250 (18%)

Query: 5   IANFKLMKVLDLEDAPVVYLPEGVGSLL-NLHYLSL-RNKKVKIIPKSIGNLLGLESLDL 62
             N    K+  + D+ +      +     N+  L L  N   +I    +     LE L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL----- 117
            + ++ E   ++ +L  LR L +   Y                       +++ L     
Sbjct: 66  SSNVLYETL-DLESLSTLRTLDLNNNYVQE---------------LLVGPSIETLHAANN 109

Query: 118 CIIEADSEVLKELMKLR----QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEE 173
            I        +    +     ++  L             +       ++ L  L  ++ +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLR-----------DLDEGCRSRVQYLD-LKLNEID 157

Query: 174 VLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSG--LTEDPIRVLHAL 230
            ++   L+     L+ L  +   +  +   +   K      LDLS   L         + 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT---LDLSSNKLAFMG-PEFQSA 213

Query: 231 PNLLQLRLAG 240
             +  + L  
Sbjct: 214 AGVTWISLRN 223

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 14/108 (12%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL 70
            +L L +  +             L  L+L   ++  +    G L  L +LDL +  ++ L
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSL 92

Query: 71  PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKL 117
           P+  + L  L  L V     TS           L  G    L  LQ+L
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQEL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
            + N+  +  +DL    +  +       +  L  L + N ++  +      +  L+ LDL
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302

Query: 63  KNTLVRELPVEIRNLKKLRYL 83
            +  +  +        +L  L
Sbjct: 303 SHNHLLHVERNQPQFDRLENL 323

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 40/236 (16%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLKNTLVRE 69
           K LDL   P+ +L      S   L  L L   +++ I      +L  L +L L    ++ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 70  LPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLK 128
           L +     L  L+ L+  +   T+ +S+            G L  L++L         + 
Sbjct: 91  LALGAFSGLSSLQKLVAVE---TNLASLENFP-------IGHLKTLKEL--------NVA 132

Query: 129 ELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVL---DLQSLSNPPQ 185
                  ++                  +NL NLE+L  L  +K + +   DL+ L   P 
Sbjct: 133 HN----LIQSF---KLPE-------YFSNLTNLEHL-DLSSNKIQSIYCTDLRVLHQMPL 177

Query: 186 YLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
               L      M  +    FK   +  L LD + L   P  +   L +L ++ L  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 4   SIANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
            + N+  +  +DL    +  +       +  L  L + N ++  +      +  L+ LDL
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

Query: 63  KNTLVRELPVEIRNLKKLRYL 83
            +  +  +        +L  L
Sbjct: 309 SHNHLLHVERNQPQFDRLENL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 45/243 (18%)

Query: 12  KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP 71
             L+L +  +  LPE      +L  L      +  +P+   +L  L   +     + +LP
Sbjct: 74  HELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 72  V----------------EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQ 115
                            E++N   L+ + V                           +L+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD--------------LPPSLE 176

Query: 116 KLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVL 175
            +       E L EL  L  L  +       N   L  L     +LE+++      EE+ 
Sbjct: 177 FIAAGNNQLEELPELQNLPFLTAIYAD---NN--SLKKLPDLPLSLESIVAGNNILEELP 231

Query: 176 DLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP--IRVLHALPN 232
           +LQ+L      L  +Y     +K LPD     + +      L+ L E P  +  L    N
Sbjct: 232 ELQNLPF----LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 233 LLQ 235
           +  
Sbjct: 288 IFS 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 48/244 (19%), Positives = 85/244 (34%), Gaps = 36/244 (14%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSL-RNKKVKIIPKSIGNLLGLESLDLKNTLVRE 69
             LD+ +  +V L + +   L NL  L +  N  V I  ++   L  LE L L+   +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 70  LPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKL-----CIIEA 122
           +P E   +L  L  L +         +I       +    F  L  L+ L       ++ 
Sbjct: 167 IPTEALSHLHGLIVLRL------RHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 123 DSEVLKELMKLRQLR----KLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQ 178
            +      + L  L      L+  P           + +L  L  L  L  +    ++  
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYL--------AVRHLVYLRFLN-LSYNPISTIEGS 266

Query: 179 SLSNPPQYLQRLYFKG-DMKKLPDWIFKP-KNVIRLGLDLSGLTEDPIRVLHALPNLLQL 236
            L    + LQ +   G  +  +  + F+    +  L +  + LT     V H++ NL  L
Sbjct: 267 MLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 237 RLAG 240
            L  
Sbjct: 326 ILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 50/245 (20%)

Query: 6   ANFKLMKVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLK 63
           A+F  ++ L+L +  V  +  G   +L NL  L LR+ ++K+IP  +   L  L  LD+ 
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 64  NTLVRELPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL----- 117
              +  L   + ++L  L+ L V          I+  A       F  L +L++L     
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVY---ISHRA-------FSGLNSLEQLTLEKC 162

Query: 118 CIIEADSEVLKELMKLRQLR--KLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVL 175
            +    +E L  L  L  LR   L+I           +   + + L  L VL        
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNIN---------AIRDYSFKRLYRLKVL-------- 205

Query: 176 DLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235
               +S+ P           +  +        N+  L +    LT  P   +  L  L  
Sbjct: 206 ---EISHWPY----------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 236 LRLAG 240
           L L+ 
Sbjct: 253 LNLSY 257

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 16/173 (9%)

Query: 6   ANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLL----G 56
           A  + +K LDL ++ V      +L     +  +L  L++     ++   ++  L+     
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 57  LESLDLKNTL-VRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQ 115
           L+SL L   + + +L   ++   +L  L    Y     + +  +  + L         L+
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT----AEVRPDVYSGLSVALSGCKELR 268

Query: 116 KL--CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166
            L        + +        +L  L++        DL  L+     L+ L V
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 27/217 (12%)

Query: 26  EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV 85
               +       +L+ K V     +   L  ++ +   N+ ++ +   I+ L  +  L +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFL 75

Query: 86  YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQN 145
                   + I             +L NL  L + E   + L  L  L++L+ LS+    
Sbjct: 76  N---GNKLTDI---------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL---E 120

Query: 146 GNG-KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWI 203
            NG  D    I  L +L  L  L     ++ D+  LS   + L  L  +   +  +   +
Sbjct: 121 HNGISD----INGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP-L 174

Query: 204 FKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG 240
                +  L L  + +++  +R L  L NL  L L  
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 55/299 (18%), Positives = 84/299 (28%), Gaps = 66/299 (22%)

Query: 8   FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLV 67
              +  L + D  +  LP        L  L +   ++  +P     LL L       T +
Sbjct: 60  PAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116

Query: 68  RELPVEIRNL--------------KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTN 113
             LP  +  L                L+ L V      S           L      L  
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-----------LPALPSELCK 165

Query: 114 LQ----KLCIIEADSEVLKEL-----------MKLRQLRKLSIRPQNGNGKDLCVLIANL 158
           L     +L  +      L+EL               +L KL     N     L  L A  
Sbjct: 166 LWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAY-NNR----LTSLPALP 220

Query: 159 ENLENLIVL---------MKSKEEVLD-----LQSLSNPPQYLQRLYFKG-DMKKLPDWI 203
             L+ LIV          + S+ + L      L SL   P  L  L      + +LP+ +
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL 280

Query: 204 FKPKNVIRLGLD---LSGLTEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENWKLGLA 259
               +   + L+   LS  T   +R + + P      +           E     L  A
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 40/218 (18%), Positives = 61/218 (27%), Gaps = 39/218 (17%)

Query: 33  NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS 92
               L++    +  +P  +     + +L + +  +  LP     L+ L           S
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---------VS 89

Query: 93  GSSIAEEAAAKLHPGFGSLTNLQKLCIIEAD-SEVLKELMKLR----QLRKLSIRPQN-- 145
           G+ +       L      L  L            +   L KL     QL  L + P    
Sbjct: 90  GNQLTS-----LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144

Query: 146 -----GNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL 199
                 N   L  L A    L  L            L SL   P  LQ L      +  L
Sbjct: 145 ELSVSDN--QLASLPALPSELCKLWAYN------NQLTSLPMLPSGLQELSVSDNQLASL 196

Query: 200 PDWIFKPKNVIRLGLDLSGLTEDP--IRVLHALPNLLQ 235
           P    +   +      L+ L   P  ++ L    N L 
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 11  MKVLDLEDAPVVYLPEGV--GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLKNTLV 67
             +LDL    +  L        L NLH L L +  +  I       +  L  LDL +  +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 68  RELPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLC-----II 120
             L   +  +L+ L  L++Y  +              +    F  +  LQKL      I 
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVV-----------VDRNAFEDMAQLQKLYLSQNQIS 149

Query: 121 EADSEVLKELMKLRQLRKLSI 141
               E++K+  KL +L  L +
Sbjct: 150 RFPVELIKDGNKLPKLMLLDL 170

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 23/192 (11%)

Query: 3   TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL 62
                       +L    V  L      L  +   +  N  ++ +   +     L+ L L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHL 70

Query: 63  KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122
            +  + +L   +++L KL  L V +    + + I                 L +L +   
Sbjct: 71  SHNQISDLS-PLKDLTKLEELSVNRNRLKNLNGI-------------PSACLSRLFLDNN 116

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN 182
           +      L+ L+ L  LSI  +N   K     I  L  L  L VL     E+ +   L+ 
Sbjct: 117 ELRDTDSLIHLKNLEILSI--RNNKLKS----IVMLGFLSKLEVLDLHGNEITNTGGLTR 170

Query: 183 PPQYLQRLYFKG 194
             + +  +   G
Sbjct: 171 LKK-VNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 19/161 (11%)

Query: 26  EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV 85
             +  L  L  LS+   ++K +  +      L  L L N  +R+    + +LK L  L +
Sbjct: 79  SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTDS-LIHLKNLEILSI 135

Query: 86  YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQN 145
                 S   +              L+ L+ L +   +      L +L+++  + +  Q 
Sbjct: 136 RNNKLKSIVMLG------------FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183

Query: 146 GNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQY 186
              + +         L     +       +    +SN   Y
Sbjct: 184 CVNEPVK----YQPELYITNTVKDPDGRWISPYYISNGGSY 220

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 54/257 (21%), Positives = 90/257 (35%), Gaps = 40/257 (15%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLKNTLVRE 69
           + LDL    V  L   V  +L +L  L+L   K+  I       L  L+ L+L   L+ E
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 70  LPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKL---------- 117
           L       L K+ Y+ +        + IA      +    F  L  LQ L          
Sbjct: 329 LYSSNFYGLPKVAYIDL------QKNHIA-----IIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 118 CIIEADSEVLKELMKLRQLRKLSIRPQ-------NGNGKDLCVLIANLENLENLIVLMKS 170
             I +  ++     KL  L K+++               D+   +  + +L+ LI+    
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 171 KEEVLDLQSLSNPPQYLQRLYFKG------DMKKLPDWIFKP-KNVIRLGLDLSGLTEDP 223
                  Q+ S  P  L++L+            +L   +F+   ++  L L+ + L   P
Sbjct: 438 FSSCSGDQTPSENPS-LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 224 IRVLHALPNLLQLRLAG 240
             V   L  L  L L  
Sbjct: 497 PGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 32/251 (12%), Positives = 77/251 (30%), Gaps = 35/251 (13%)

Query: 2   NTSIANFKLMKVLDLEDAPVVYLPEGVGSLL---NLHYLSL-RNKKVKIIPKSIGNLLGL 57
             S+     +         +    +   + L   ++ +L L       +  +    L  L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 58  ESLDLKNTLVRELPVEI-RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQK 116
           + L+L    + ++  E    L  L+ L +         S            F  L  +  
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN----------FYGLPKVAY 342

Query: 117 L-----CIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCV-LIANLENLENLIVLMKS 170
           +      I     +  K L KL+ L             DL    +  +  + ++  +  S
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTL-------------DLRDNALTTIHFIPSIPDIFLS 389

Query: 171 KEEVLDLQSLSNPPQYLQRLYFKGDMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVL-HA 229
             +++ L  ++     +     + +   +  ++ +  ++  L L+ +  +          
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 230 LPNLLQLRLAG 240
            P+L QL L  
Sbjct: 450 NPSLEQLFLGE 460

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 1   MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
            +     +  ++VL L    +  L   +  LL + +L L + +++ +P ++  L  LE L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 61  DLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCI 119
              +  +  +   + NL +L+ L++        ++I             S   L  L +
Sbjct: 492 QASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQP---------LVSCPRLVLLNL 540

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 25/243 (10%)

Query: 12  KVLDLEDAPVVYLPEGV-GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLKNTLVRE 69
           + L L    +  + E    SL +L +L L    +  +  S    L  L  L+L     + 
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 70  LPVEI--RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKL-----CIIEA 122
           L       +L KL+ L V      + + I  +        F  LT L++L      +   
Sbjct: 139 LGETSLFSHLTKLQILRV--GNMDTFTKIQRKD-------FAGLTFLEELEIDASDLQSY 189

Query: 123 DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE----NLIVLMKSKEEVLDLQ 178
           + + LK +  +  L  L ++      +    + +++E LE    +L     S+    +  
Sbjct: 190 EPKSLKSIQNVSHLI-LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 179 SLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237
           SL       + +      + ++   + +   ++ L    + L   P  +   L +L ++ 
Sbjct: 249 SLIKKF-TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 238 LAG 240
           L  
Sbjct: 308 LHT 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.82
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.26

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=8.5e-29  Score=202.50  Aligned_cols=222  Identities=22%  Similarity=0.229  Sum_probs=196.7

Q ss_pred             ccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccc
Q 042184            8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~   87 (261)
                      .+++++|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            47899999999999999998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCchhhhhhhhhcCCccc---------CCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhC
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFG---------SLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIAN  157 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~---------~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  157 (261)
                      |++.+          .+|..+.         .+++|+.|++++| ...++..+..+++|+.|++++  +....++..+..
T Consensus       160 n~~~~----------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~--N~l~~l~~~l~~  227 (328)
T 4fcg_A          160 CPELT----------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN--SPLSALGPAIHH  227 (328)
T ss_dssp             ETTCC----------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES--SCCCCCCGGGGG
T ss_pred             CCCcc----------ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC--CCCCcCchhhcc
Confidence            87654          5565554         4999999999999 446777799999999999998  333356677999


Q ss_pred             CCCCceEEEeecccccccccccccCCccccceEEEec-cC-cCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184          158 LENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DM-KKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ  235 (261)
Q Consensus       158 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  235 (261)
                      +++|++|++++|.+.+..+ ..+..++ +|++|++++ .+ ..+|..+..+++|++|++++|.+.+.++..+.++++|+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p-~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYP-PIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCC-CCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             CCCCCEEECcCCcchhhhH-HHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            9999999999998887776 4588899 999999998 55 488888999999999999999999999999999999999


Q ss_pred             eEec-cccc
Q 042184          236 LRLA-GTYN  243 (261)
Q Consensus       236 L~l~-n~~~  243 (261)
                      +++. +.+.
T Consensus       306 l~l~~~~~~  314 (328)
T 4fcg_A          306 ILVPPHLQA  314 (328)
T ss_dssp             EECCGGGSC
T ss_pred             EeCCHHHHH
Confidence            9998 6553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.2e-28  Score=220.96  Aligned_cols=232  Identities=20%  Similarity=0.232  Sum_probs=172.1

Q ss_pred             CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLK   78 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~   78 (261)
                      |..+.++++|++|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            556677777777777777766 66667777777777777777776 66777777777777777777776 6667777777


Q ss_pred             cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchH----
Q 042184           79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLC----  152 (261)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----  152 (261)
                      +|++|++++|++++          ..|..++.+++|+.|++++|  .+..|..++.+++|+.|+++++ ...+.+|    
T Consensus       491 ~L~~L~L~~N~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~  559 (768)
T 3rgz_A          491 NLNWISLSNNRLTG----------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMF  559 (768)
T ss_dssp             TCCEEECCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS-EEESBCCGGGG
T ss_pred             CCCEEEccCCccCC----------cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC-ccCCcCChHHh
Confidence            77777777776654          56677777778888888777  4456677777788888877651 1111111    


Q ss_pred             ------------------------------------------------------------------HHHhCCCCCceEEE
Q 042184          153 ------------------------------------------------------------------VLIANLENLENLIV  166 (261)
Q Consensus       153 ------------------------------------------------------------------~~l~~~~~L~~L~l  166 (261)
                                                                                        ..++.+++|+.|++
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence                                                                              12334567888888


Q ss_pred             eecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ++|.+.+..| ..+..++ +|+.|++++ .++ .+|..++.+++|+.|++++|.+++.+|..++++++|++|+++ |.++
T Consensus       640 s~N~l~g~ip-~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          640 SYNMLSGYIP-KEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CSSCCBSCCC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cCCcccccCC-HHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            8888877777 4577788 888888888 777 788888888889999999998888888888888899999999 8887


Q ss_pred             cee
Q 042184          244 YEL  246 (261)
Q Consensus       244 ~~~  246 (261)
                      +..
T Consensus       718 g~i  720 (768)
T 3rgz_A          718 GPI  720 (768)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=5.7e-29  Score=202.34  Aligned_cols=223  Identities=19%  Similarity=0.161  Sum_probs=127.9

Q ss_pred             cccceeecCCCCCC---CCcccccCcccccEEEecC-CCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccc
Q 042184            9 KLMKVLDLEDAPVV---YLPEGVGSLLNLHYLSLRN-KKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRY   82 (261)
Q Consensus         9 ~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~   82 (261)
                      .++++|+++++.+.   .+|..+..+++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            35666666666655   3555666666666666663 5555 55555666666666666666665 55555666666666


Q ss_pred             eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccc-cccEEEeeccCCCccchHHHHhCCC
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLR-QLRKLSIRPQNGNGKDLCVLIANLE  159 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~  159 (261)
                      |++++|.+++          ..|..+..+++|+.|++++|  .+..+..+..++ +|+.|++++ +...+..|..+..++
T Consensus       130 L~Ls~N~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          130 LDFSYNALSG----------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN  198 (313)
T ss_dssp             EECCSSEEES----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC
T ss_pred             EeCCCCccCC----------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc
Confidence            6666665543          34555566666666666666  334455555555 666666655 223334445555554


Q ss_pred             CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184          160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL  238 (261)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  238 (261)
                       |++|++++|.+.+..+ ..+..++ +|+.|++++ .++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       199 -L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDAS-VLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             -CSEEECCSSEEEECCG-GGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             -ccEEECcCCcccCcCC-HHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence             6666666665554433 3355555 666666666 55533333555566666666666666555555666666666666


Q ss_pred             c-ccccce
Q 042184          239 A-GTYNYE  245 (261)
Q Consensus       239 ~-n~~~~~  245 (261)
                      + |.+++.
T Consensus       276 s~N~l~~~  283 (313)
T 1ogq_A          276 SFNNLCGE  283 (313)
T ss_dssp             CSSEEEEE
T ss_pred             cCCccccc
Confidence            6 655543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.2e-28  Score=197.22  Aligned_cols=225  Identities=19%  Similarity=0.263  Sum_probs=198.4

Q ss_pred             CCccccCccccceeecCC-CCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhc
Q 042184            1 MNTSIANFKLMKVLDLED-APVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRN   76 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~   76 (261)
                      +|..|.++++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            477899999999999995 8888 88999999999999999999998 89999999999999999999999 78899999


Q ss_pred             cccccceeccceecccCchhhhhhhhhcCCcccCCC-CCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHH
Q 042184           77 LKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT-NLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCV  153 (261)
Q Consensus        77 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  153 (261)
                      +++|++|++++|.+++          .+|..+..++ +|+.|++++|  .+..+..+..++ |+.|++++ +......+.
T Consensus       148 l~~L~~L~L~~N~l~~----------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~  215 (313)
T 1ogq_A          148 LPNLVGITFDGNRISG----------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR-NMLEGDASV  215 (313)
T ss_dssp             CTTCCEEECCSSCCEE----------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS-SEEEECCGG
T ss_pred             CCCCCeEECcCCcccC----------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC-CcccCcCCH
Confidence            9999999999998764          6788888888 9999999999  556677778887 99999988 444456777


Q ss_pred             HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                      .+..+++|++|++++|.+.+..+  .+..++ +|++|++++ .++ .+|..+..+++|+.|++++|.+++.++.. .+++
T Consensus       216 ~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~  291 (313)
T 1ogq_A          216 LFGSDKNTQKIHLAKNSLAFDLG--KVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ  291 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCBGG--GCCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred             HHhcCCCCCEEECCCCceeeecC--cccccC-CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence            88999999999999998876555  266778 999999999 888 88999999999999999999999876655 7899


Q ss_pred             cccceEec-cc
Q 042184          232 NLLQLRLA-GT  241 (261)
Q Consensus       232 ~L~~L~l~-n~  241 (261)
                      +|+.++++ |+
T Consensus       292 ~L~~l~l~~N~  302 (313)
T 1ogq_A          292 RFDVSAYANNK  302 (313)
T ss_dssp             GSCGGGTCSSS
T ss_pred             ccChHHhcCCC
Confidence            99999999 75

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=4.2e-27  Score=212.66  Aligned_cols=227  Identities=19%  Similarity=0.205  Sum_probs=189.0

Q ss_pred             ccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhcccccccee
Q 042184            8 FKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLM   84 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~   84 (261)
                      +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            566777777777777 67777788888888888888877 77777888888888888888877 6777888888888888


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +++|++++          ..|..+..+++|+.|++++|  .+..|..++.+++|+.|++++ +...+.+|..+..+++|+
T Consensus       473 L~~N~l~~----------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          473 LDFNDLTG----------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN-NSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             CCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGGCTTCC
T ss_pred             ecCCcccC----------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCCC
Confidence            88887764          57788899999999999999  557788889999999999988 556667888999999999


Q ss_pred             eEEEeecccccccccc----------------------------------------------------------------
Q 042184          163 NLIVLMKSKEEVLDLQ----------------------------------------------------------------  178 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~----------------------------------------------------------------  178 (261)
                      +|++++|.+.+..|..                                                                
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            9999999776544311                                                                


Q ss_pred             -----cccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccccee
Q 042184          179 -----SLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       179 -----~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~  246 (261)
                           .+..++ +|+.|++++ .++ .+|..++.++.|+.|++++|.+++.++..++++++|+.|+++ |.+++..
T Consensus       622 g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          622 GHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             EECCCSCSSSB-CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             ccCchhhhccc-cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence                 123356 799999999 887 899999999999999999999999999999999999999999 9987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-26  Score=188.33  Aligned_cols=225  Identities=21%  Similarity=0.156  Sum_probs=185.3

Q ss_pred             cccceeecCCCCCCCCccc-ccCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            9 KLMKVLDLEDAPVVYLPEG-VGSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +++++|++++|.++.+|.. +..+++|++|++++|.++.+   +..+..+++|++|++++|.+..++..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            5899999999999987754 68999999999999998743   5666789999999999999998888888999999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +++|.+++.         .....+..+++|+.|++++|  ....+..+..+++|+.|+++++.......+..+..+++|+
T Consensus       108 l~~n~l~~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          108 FQHSNLKQM---------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             CTTSEEESS---------TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCccccc---------ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            999977531         11247888999999999998  4445566788999999999872222224677788999999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC-cccceEec
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP-NLLQLRLA  239 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~  239 (261)
                      +|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|+.|++++|.+++..+..+..++ +|+.|+++
T Consensus       179 ~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          179 FLDLSQCQLEQLSP-TAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             EEECTTSCCCEECT-TTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             EEECCCCCcCCcCH-HHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            99999998876544 4577888 999999999 8887665 567799999999999999988877888885 99999999


Q ss_pred             -ccccc
Q 042184          240 -GTYNY  244 (261)
Q Consensus       240 -n~~~~  244 (261)
                       |.++.
T Consensus       257 ~N~~~~  262 (306)
T 2z66_A          257 QNDFAC  262 (306)
T ss_dssp             TCCEEC
T ss_pred             CCCeec
Confidence             98864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=1.2e-25  Score=191.59  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=47.0

Q ss_pred             HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccC
Q 042184          153 VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHAL  230 (261)
Q Consensus       153 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (261)
                      ..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ |..+..+++|++|++++|.+++..+..+..+
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDS-RMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECG-GGGTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hHhcCcccCCEEECCCCccCCcCh-hHhcCcc-cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            344444555555555554433222 2344455 555555555 55533 4445555666666666666555444445556


Q ss_pred             CcccceEec-ccccc
Q 042184          231 PNLLQLRLA-GTYNY  244 (261)
Q Consensus       231 ~~L~~L~l~-n~~~~  244 (261)
                      ++|+.|+++ |+++.
T Consensus       395 ~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          395 TSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCCEEECCSSCBCC
T ss_pred             CcccEEEccCCCccc
Confidence            666666666 55543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.3e-26  Score=185.29  Aligned_cols=219  Identities=21%  Similarity=0.253  Sum_probs=178.4

Q ss_pred             cceeecCCCCCC--CCccccc-------CcccccEEEecCCCce-eccccc--CCCCCCcEEeCCCCcccccchHhhcc-
Q 042184           11 MKVLDLEDAPVV--YLPEGVG-------SLLNLHYLSLRNKKVK-IIPKSI--GNLLGLESLDLKNTLVRELPVEIRNL-   77 (261)
Q Consensus        11 L~~L~l~~~~l~--~~~~~~~-------~l~~L~~L~l~~~~i~-~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l-   77 (261)
                      |++|++++|.+.  .++..+.       .+++|++|++++|.++ .+|..+  ..+++|++|++++|.+...|..+..+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            777788888775  4665554       6899999999999998 788776  89999999999999999768777776 


Q ss_pred             ----ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH--HHHHH--hccccccEEEeeccCCC
Q 042184           78 ----KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE--VLKEL--MKLRQLRKLSIRPQNGN  147 (261)
Q Consensus        78 ----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~--~~~~l--~~~~~L~~L~l~~~~~~  147 (261)
                          ++|++|++++|++++          ..+..++.+++|+.|++++|  .+.  .+..+  ..+++|+.|+++++ ..
T Consensus       145 ~~~~~~L~~L~L~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l  213 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLN----------FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GM  213 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCC----------CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CC
T ss_pred             HhhcCCCcEEEeeCCCCcc----------chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cC
Confidence                899999999997753          33478899999999999999  332  45555  88999999999983 22


Q ss_pred             c--cchH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184          148 G--KDLC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP  223 (261)
Q Consensus       148 ~--~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  223 (261)
                      .  ...+ ..+..+++|++|++++|.+.+..+...+..++ +|++|++++ .++.+|..+.  ++|++|++++|.+++. 
T Consensus       214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-  289 (312)
T 1wwl_A          214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-  289 (312)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred             cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-
Confidence            2  1333 34467899999999999988766544566677 999999999 9999998776  8999999999999976 


Q ss_pred             hHHhccCCcccceEec-ccccce
Q 042184          224 IRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       224 ~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      +. +..+++|++|+++ |.+++.
T Consensus       290 p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          290 PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hh-HhhCCCCCEEeccCCCCCCC
Confidence            33 8899999999999 988754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=1.8e-25  Score=182.97  Aligned_cols=225  Identities=17%  Similarity=0.213  Sum_probs=149.2

Q ss_pred             cccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhcccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLR   81 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~   81 (261)
                      .|.++++|++|++++|.+..+ |..++.+++|++|++++|.++.+|..+.  ++|++|++++|.+..++ ..+..+++|+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            455666666666666666533 4555666666666666666665554432  56666666666665443 3456677777


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN  160 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  160 (261)
                      +|++++|.++        .....+..+..+++|+.|++++| ...++..+  .++|+.|++++ +......+..+..+++
T Consensus       149 ~L~l~~n~l~--------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~-n~l~~~~~~~~~~l~~  217 (330)
T 1xku_A          149 VVELGTNPLK--------SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG-NKITKVDAASLKGLNN  217 (330)
T ss_dssp             EEECCSSCCC--------GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT-SCCCEECTGGGTTCTT
T ss_pred             EEECCCCcCC--------ccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC-CcCCccCHHHhcCCCC
Confidence            7777777654        12234556677777777777777 22222222  26777888776 3334444667888888


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhc------cCCcc
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLH------ALPNL  233 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L  233 (261)
                      |++|++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|++|++++|.+++.....+.      ..+.+
T Consensus       218 L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          218 LAKLGLSFNSISAVDN-GSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             CCEEECCSSCCCEECT-TTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CCEEECCCCcCceeCh-hhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence            9999999888765544 4577788 899999988 8888888888889999999999988875554443      24678


Q ss_pred             cceEec-cccc
Q 042184          234 LQLRLA-GTYN  243 (261)
Q Consensus       234 ~~L~l~-n~~~  243 (261)
                      +.++++ |++.
T Consensus       296 ~~l~l~~N~~~  306 (330)
T 1xku_A          296 SGVSLFSNPVQ  306 (330)
T ss_dssp             SEEECCSSSSC
T ss_pred             cceEeecCccc
Confidence            888888 8774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3e-26  Score=187.41  Aligned_cols=207  Identities=19%  Similarity=0.229  Sum_probs=180.8

Q ss_pred             CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-ccchHhh----
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-ELPVEIR----   75 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~----   75 (261)
                      +|..+.++++|++|++++|.+..+|..++.+++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..+.    
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence            57788999999999999999999999999999999999999999999999999999999999997654 6776655    


Q ss_pred             -----ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCcc
Q 042184           76 -----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGK  149 (261)
Q Consensus        76 -----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~  149 (261)
                           .+++|++|++++|.++           .+|..+..+++|+.|++++| ...++..+..+++|+.|++++ +...+
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~-----------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~-n~~~~  243 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR-----------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALR  243 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC-----------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT-CTTCC
T ss_pred             hhhhccCCCCCEEECcCCCcC-----------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC-Ccchh
Confidence                 4999999999999664           67888999999999999999 445666789999999999998 44556


Q ss_pred             chHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cC-cCCCccccCCCcccEEEeccCCCCC
Q 042184          150 DLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DM-KKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       150 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l-~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      .+|..+..+++|++|++++|...+..+ ..+..++ +|++|++++ .+ +.+|..++.+++|+.+++..+.+..
T Consensus       244 ~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          244 NYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             BCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             hhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCC-CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            678889999999999999998887777 4578899 999999999 54 5899999999999999998876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=3.4e-25  Score=190.06  Aligned_cols=230  Identities=20%  Similarity=0.215  Sum_probs=138.0

Q ss_pred             CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccc-cchHhhccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRE-LPVEIRNLK   78 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~   78 (261)
                      +..|.++++|++|++++|.+. ..|..+.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. .+..+..++
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            345667777777777777776 335666777777777777777775554 35667777777777777663 345566777


Q ss_pred             cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184           79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA  156 (261)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  156 (261)
                      +|++|++++|.+++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++.+ +......+..+.
T Consensus       129 ~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~  197 (477)
T 2id5_A          129 NLKSLEVGDNDLVY----------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFK  197 (477)
T ss_dssp             TCCEEEECCTTCCE----------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSC
T ss_pred             cCCEEECCCCccce----------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC-CcCcEeChhhcc
Confidence            77777777775542          23456677777888887777  333445567777777777766 222222233445


Q ss_pred             CCCCCceEEEeeccccccccc-----------------------ccccCCccccceEEEec-cCcCCCc-cccCCCcccE
Q 042184          157 NLENLENLIVLMKSKEEVLDL-----------------------QSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIR  211 (261)
Q Consensus       157 ~~~~L~~L~l~~n~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~  211 (261)
                      .+++|++|++++|...+..+.                       ..+..++ +|+.|++++ .++.++. .+..+++|+.
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCE
Confidence            555555555555433322221                       1234445 555555555 5553332 3445566666


Q ss_pred             EEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          212 LGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       212 L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      |++++|.+++..+..+..+++|+.|+++ |.++
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            6666666665555556666777777777 6554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=5.8e-26  Score=201.12  Aligned_cols=226  Identities=12%  Similarity=0.156  Sum_probs=181.5

Q ss_pred             CCccccCccccceeecCCCCCCC------------------Cccccc--CcccccEEEecCCCce-ecccccCCCCCCcE
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVY------------------LPEGVG--SLLNLHYLSLRNKKVK-IIPKSIGNLLGLES   59 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~------------------~~~~~~--~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~   59 (261)
                      ||.+|+++++|++|++++|.++.                  +|..++  ++++|++|++++|.+. .+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            57889999999999999999996                  999998  9999999999999977 89999999999999


Q ss_pred             EeCCCCc-cc--ccchHhhcc------ccccceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc--chHH
Q 042184           60 LDLKNTL-VR--ELPVEIRNL------KKLRYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA--DSEV  126 (261)
Q Consensus        60 L~l~~~~-~~--~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~--~~~~  126 (261)
                      |++++|. ++  .+|..+..+      ++|++|++++|+++           .+|.  .++.+++|+.|++++|  .+.+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----------~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----------TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----------SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----------ccCchhhhccCCCCCEEeCcCCcCccch
Confidence            9999998 87  488888776      99999999999764           6787  8999999999999998  4366


Q ss_pred             HHHHhccccccEEEeeccCCCccchHHHHhCCCC-CceEEEeeccccccccccccc--CCccccceEEEec-cCc-CCCc
Q 042184          127 LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN-LENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMK-KLPD  201 (261)
Q Consensus       127 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~-~l~~  201 (261)
                      + .+..+++|+.|++++  +....+|..+..+++ |++|++++|.+. ..+ ..+.  .++ +|++|++++ .++ .+|.
T Consensus       347 p-~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~-~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAY--NQITEIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVS-VMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             C-CCEEEEEESEEECCS--SEEEECCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSS-CEEEEECCSSCTTTTTTC
T ss_pred             h-hhCCCCCCCEEECCC--CccccccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccC-ccCEEECcCCcCCCcchh
Confidence            6 788889999999987  333367777888888 999999998876 333 1222  244 688888887 666 4555


Q ss_pred             ccc-------CCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          202 WIF-------KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       202 ~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      .+.       .+++|++|++++|.++......+..+++|++|+++ |.++
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            555       56678888888888775444555567778888887 7665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=6.2e-26  Score=187.44  Aligned_cols=223  Identities=21%  Similarity=0.301  Sum_probs=146.4

Q ss_pred             cccceeecCCCCCCCCcc-cccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l   85 (261)
                      ++|++|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            467777777777775543 667777777777777777744 44577777777777777777766654 667777777777


Q ss_pred             cceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184           86 YQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN  160 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  160 (261)
                      ++|+++           .++.  .+..+++|+.|++++|   ....+..+..+++|+.|++++ +......+..+..+++
T Consensus       132 ~~n~l~-----------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~  199 (353)
T 2z80_A          132 LGNPYK-----------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA-SDLQSYEPKSLKSIQN  199 (353)
T ss_dssp             TTCCCS-----------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSE
T ss_pred             CCCCCc-----------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC-CCcCccCHHHHhcccc
Confidence            777554           3443  5666777777777665   222234566666777777766 2333334555666666


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcC--------------------------------CCccccCCC
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK--------------------------------LPDWIFKPK  207 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~--------------------------------l~~~~~~~~  207 (261)
                      |++|++++|.+..... ..+..++ +|++|++++ .++.                                +|..+..++
T Consensus       200 L~~L~l~~n~l~~~~~-~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~  277 (353)
T 2z80_A          200 VSHLILHMKQHILLLE-IFVDVTS-SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS  277 (353)
T ss_dssp             EEEEEEECSCSTTHHH-HHHHHTT-TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred             CCeecCCCCccccchh-hhhhhcc-cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence            6666666665432211 1223344 566666655 4442                                444567788


Q ss_pred             cccEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184          208 NVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      +|++|++++|.++......+.++++|++|+++ |+++.+
T Consensus       278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            99999999999986544456889999999999 887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=4.2e-25  Score=188.34  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEE
Q 042184          135 QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRL  212 (261)
Q Consensus       135 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L  212 (261)
                      +|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ +..+..+++|++|
T Consensus       276 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          276 GVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             CCCEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             CceEEEecC-ccccccchhhcccCCCCCEEECCCCcccccCh-hHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            444444444 22333345556677777788877777665444 4466777 888888887 77754 4556677888888


Q ss_pred             EeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          213 GLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      ++++|.+++..+..+..+++|++|+++ |.++.
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCcccc
Confidence            888888877666777778888888888 77653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.7e-24  Score=184.49  Aligned_cols=222  Identities=20%  Similarity=0.206  Sum_probs=172.1

Q ss_pred             cccceeecCCCCCCCC-cccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l   85 (261)
                      +++++|++++|.+..+ +..+..+++|++|++++|.++. .|..+.++++|++|++++|.+..++. .+..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            5799999999999954 5788999999999999999984 47789999999999999999997765 4688999999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN  163 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  163 (261)
                      ++|.+++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++.+ +......+..+..+++|+.
T Consensus       112 s~n~i~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          112 SENKIVI----------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TTSCCCE----------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCE
T ss_pred             CCCcccc----------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcE
Confidence            9998753          34667899999999999998  444455688899999999998 3444444567899999999


Q ss_pred             EEEeecccccccccccccCCccccceEEEec-c-CcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-D-MKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~-l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n  240 (261)
                      |++++|.+.+..+ ..+..++ +|+.|++++ . +..++.......+|++|++++|.+++.....+..+++|+.|+++ |
T Consensus       181 L~l~~n~i~~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          181 LRLRHLNINAIRD-YSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEEESCCCCEECT-TCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             EeCCCCcCcEeCh-hhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            9999998876544 4577777 888888877 3 33555544444566666666666665444555666666666666 5


Q ss_pred             ccc
Q 042184          241 TYN  243 (261)
Q Consensus       241 ~~~  243 (261)
                      .++
T Consensus       259 ~l~  261 (477)
T 2id5_A          259 PIS  261 (477)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3e-25  Score=195.65  Aligned_cols=237  Identities=21%  Similarity=0.206  Sum_probs=128.8

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCccc-ccch-Hhhccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVR-ELPV-EIRNLKKL   80 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L   80 (261)
                      .|.++++|++|++++|.++.+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+. .++. .+..+++|
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            36667777777777777777777777777777777777776633 445566666666666666554 3332 25556666


Q ss_pred             cceeccceecccCc---------------hhhhhhh-hhcCCcccCCCCCCeEecccc--chHH-HHHHhccccccEEEe
Q 042184           81 RYLMVYQYYFTSGS---------------SIAEEAA-AKLHPGFGSLTNLQKLCIIEA--DSEV-LKELMKLRQLRKLSI  141 (261)
Q Consensus        81 ~~L~l~~~~~~~~~---------------~~~~~~~-~~l~~~~~~~~~L~~L~l~~~--~~~~-~~~l~~~~~L~~L~l  141 (261)
                      ++|++++|.+++..               .+..+.+ ...+..+..+++|+.|++++|  .... +..+..+++|+.|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            66666666544200               0000000 012233444444444444444  1111 122444455555555


Q ss_pred             eccCCCccchHHHHhCCCCCceEEEeeccccccc--ccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccC
Q 042184          142 RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVL--DLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLS  217 (261)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~  217 (261)
                      ++ +......+..+..+++|++|++++|.+.+..  ....+..++ +|++|++++ .++.+ |..+..+++|++|++++|
T Consensus       433 ~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          433 SH-SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             TT-CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CC-CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            44 2222233444555666666666666554311  112345555 666666666 56533 445566666777777777


Q ss_pred             CCCCChhHHhccCCcccceEec-cccc
Q 042184          218 GLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      .+++..+..+.++++| .|+++ |.++
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             ccCcCChhHhCccccc-EEECcCCccc
Confidence            6666666666666666 66666 6554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=185.17  Aligned_cols=220  Identities=19%  Similarity=0.248  Sum_probs=181.2

Q ss_pred             cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l   85 (261)
                      +++++|++++|.+..+ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            5789999999999944 478889999999999999998544 678899999999999999997765 5788999999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      ++|.++.          .-+..+..+++|+.|+++++  ... ....+..+++|+.|+++++  ....++ .+..+++|+
T Consensus       144 ~~N~i~~----------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~-~~~~l~~L~  210 (440)
T 3zyj_A          144 RNNPIES----------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLREIP-NLTPLIKLD  210 (440)
T ss_dssp             CSCCCCE----------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--CCSSCC-CCTTCSSCC
T ss_pred             CCCcccc----------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC--cCcccc-ccCCCcccC
Confidence            9997652          22347888999999999986  222 3345788999999999882  223344 477889999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-  239 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-  239 (261)
                      +|++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.++......+..+++|+.|+++ 
T Consensus       211 ~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          211 ELDLSGNHLSAIRP-GSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             EEECTTSCCCEECT-TTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             EEECCCCccCccCh-hhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            99999998876655 5688899 999999999 88855 4557789999999999999998777788899999999999 


Q ss_pred             cccc
Q 042184          240 GTYN  243 (261)
Q Consensus       240 n~~~  243 (261)
                      |++.
T Consensus       289 Np~~  292 (440)
T 3zyj_A          289 NPWN  292 (440)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            8763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=8.4e-25  Score=186.41  Aligned_cols=219  Identities=20%  Similarity=0.243  Sum_probs=180.7

Q ss_pred             cccceeecCCCCCCC-CcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184            9 KLMKVLDLEDAPVVY-LPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l   85 (261)
                      +++++|++++|.+.. .+..+..+++|+.|++++|.++.+ +..+.++++|++|++++|.+..++.. +..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            579999999999994 467889999999999999999844 46788999999999999999976654 778999999999


Q ss_pred             cceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           86 YQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      ++|.++           .++ ..+..+++|+.|+++++  ...+ ...+..+++|+.|+++++ . ...++ .+..+++|
T Consensus       155 ~~N~l~-----------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~-l~~~~-~~~~l~~L  220 (452)
T 3zyi_A          155 RNNPIE-----------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-N-IKDMP-NLTPLVGL  220 (452)
T ss_dssp             CSCCCC-----------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-C-CSSCC-CCTTCTTC
T ss_pred             CCCCcc-----------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-c-ccccc-cccccccc
Confidence            999765           333 46889999999999985  3222 345788999999999882 2 22333 47788999


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      ++|++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.+++.....+..+++|+.|+++
T Consensus       221 ~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          221 EELEMSGNHFPEIRP-GSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             CEEECTTSCCSEECG-GGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             cEEECcCCcCcccCc-ccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            999999998876655 5688899 999999999 88854 5567789999999999999998777778889999999999


Q ss_pred             -cccc
Q 042184          240 -GTYN  243 (261)
Q Consensus       240 -n~~~  243 (261)
                       |++.
T Consensus       299 ~Np~~  303 (452)
T 3zyi_A          299 HNPWN  303 (452)
T ss_dssp             SSCEE
T ss_pred             CCCcC
Confidence             8763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=6e-25  Score=179.90  Aligned_cols=217  Identities=20%  Similarity=0.178  Sum_probs=128.3

Q ss_pred             cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      +++++|++++|.++.++ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            34555555555555333 2445555555555555555532 4445555555555555555554443322  455555555


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--c--hHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--D--SEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +|.+++          ..+..+..+++|+.|++++|  .  +..+..+..+++|+.|++++  +....++..+  .++|+
T Consensus       130 ~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~--n~l~~l~~~~--~~~L~  195 (330)
T 1xku_A          130 ENEITK----------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD--TNITTIPQGL--PPSLT  195 (330)
T ss_dssp             SSCCCB----------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS--SCCCSCCSSC--CTTCS
T ss_pred             CCcccc----------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC--CccccCCccc--cccCC
Confidence            554432          11223555666666666666  1  12344455666666666655  1122222222  25677


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-  239 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-  239 (261)
                      +|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|++|++++|.++ .++..+..+++|++|+++ 
T Consensus       196 ~L~l~~n~l~~~~~-~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          196 ELHLDGNKITKVDA-ASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             EEECTTSCCCEECT-GGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             EEECCCCcCCccCH-HHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence            77777776654433 4567777 888888888 7875543 5777888999999999887 455667888999999999 


Q ss_pred             ccccc
Q 042184          240 GTYNY  244 (261)
Q Consensus       240 n~~~~  244 (261)
                      |.++.
T Consensus       273 N~i~~  277 (330)
T 1xku_A          273 NNISA  277 (330)
T ss_dssp             SCCCC
T ss_pred             CcCCc
Confidence            87764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=4.8e-25  Score=180.62  Aligned_cols=221  Identities=19%  Similarity=0.179  Sum_probs=117.4

Q ss_pred             cccceeecCCCCCCCC-cccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-------------
Q 042184            9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-------------   73 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-------------   73 (261)
                      +++++|++++|.+..+ +..+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..             
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            3455555555555432 23444555555555555555422 34444555555555555554444332             


Q ss_pred             ---------hhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184           74 ---------IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        74 ---------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~  143 (261)
                               +..+++|++|++++|.++.        ....+..+..+ +|+.|++++| ...++..+  .++|+.|++++
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~  202 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPLEN--------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDH  202 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCCBG--------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCS
T ss_pred             ccCccCHhHhCCCccCCEEECCCCcccc--------CCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCC
Confidence                     3444455555555444321        11223333333 4555555444 11122111  14566666655


Q ss_pred             cCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184          144 QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       144 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                       +......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.+++.
T Consensus       203 -n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          203 -NKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             -SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             -CcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence             22233333456667777777777776665433 3456666 777777777 7777777777777777777777777765


Q ss_pred             hhHHhcc------CCcccceEec-cccc
Q 042184          223 PIRVLHA------LPNLLQLRLA-GTYN  243 (261)
Q Consensus       223 ~~~~~~~------~~~L~~L~l~-n~~~  243 (261)
                      ....+..      .++|+.++++ |++.
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ChhHccccccccccccccceEeecCccc
Confidence            4444432      3567777777 6653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.7e-24  Score=181.15  Aligned_cols=221  Identities=19%  Similarity=0.211  Sum_probs=117.4

Q ss_pred             ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR   81 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   81 (261)
                      +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+|.. +..+++|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            455666666666666666333 35566666666666666666333 3456666666666666666655544 35566666


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccc--------------------------
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLR--------------------------  134 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~--------------------------  134 (261)
                      +|++++|.+++          ..+..+..+++|+.|++++| ....  .+..++                          
T Consensus       145 ~L~L~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l  212 (390)
T 3o6n_A          145 TLSMSNNNLER----------IEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDA  212 (390)
T ss_dssp             EEECCSSCCCB----------CCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred             EEECCCCccCc----------cChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEEC
Confidence            66666665432          12334555555666655555 1100  011122                          


Q ss_pred             --------------cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC
Q 042184          135 --------------QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL  199 (261)
Q Consensus       135 --------------~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l  199 (261)
                                    +|+.|+++++ ... . ...+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+
T Consensus       213 ~~n~l~~~~~~~~~~L~~L~l~~n-~l~-~-~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          213 SHNSINVVRGPVNVELTILKLQHN-NLT-D-TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ-RLERLYISNNRLVAL  287 (390)
T ss_dssp             CSSCCCEEECCCCSSCCEEECCSS-CCC-C-CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCS-SCCEEECCSSCCCEE
T ss_pred             CCCeeeeccccccccccEEECCCC-CCc-c-cHHHcCCCCccEEECCCCcCCCcCh-hHccccc-cCCEEECCCCcCccc
Confidence                          2333333331 111 1 1245556666666666665554433 3455555 666666666 66655


Q ss_pred             CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          200 PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      +..+..+++|+.|++++|.+++ ++..+..+++|+.|+++ |.++
T Consensus       288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred             CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccc
Confidence            5555556666666666666553 23334455555555555 5543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=2.1e-24  Score=190.35  Aligned_cols=232  Identities=14%  Similarity=0.146  Sum_probs=161.6

Q ss_pred             CCccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCce-ec---------------------------cccc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVK-II---------------------------PKSI   51 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~-~~---------------------------~~~l   51 (261)
                      +|..+.++++|++|++++|.+..+ +..++.+++|+.|++++|.+. .+                           +..+
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence            345566666666666666666533 334444555555555554443 33                           3334


Q ss_pred             CCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHH
Q 042184           52 GNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLK  128 (261)
Q Consensus        52 ~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~  128 (261)
                      ..+++|++|++++|.+. ..+..+..+++|++|++++|.+++         ...+..+..+++|+.|++++|  ....+.
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV---------KDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC---------CTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC---------cccchhhhCcccCCEEECCCCccCCcCHH
Confidence            45555555555555544 223445555566666666655432         112334888999999999999  555567


Q ss_pred             HHhccccccEEEeeccCCCccch--HHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCcccc
Q 042184          129 ELMKLRQLRKLSIRPQNGNGKDL--CVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIF  204 (261)
Q Consensus       129 ~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~  204 (261)
                      .+..+++|+.|+++++......+  +..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++ ..|..+.
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLK-MMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCCGGGGGGGT
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-hhhcccc-CCCEEECCCCccCcCChhHhC
Confidence            78899999999998832222122  2468889999999999998886655 5688899 999999999 887 4566788


Q ss_pred             CCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          205 KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      .++.| .|++++|.+++..+..+..+++|+.++++ |+++.
T Consensus       522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            89999 99999999999888888999999999999 98864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=8.5e-25  Score=193.67  Aligned_cols=223  Identities=15%  Similarity=0.162  Sum_probs=123.0

Q ss_pred             cccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCceecccccCCCCC-CcEEeCCCCcccccchHhhcc--cc
Q 042184            4 SIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLG-LESLDLKNTLVRELPVEIRNL--KK   79 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l--~~   79 (261)
                      .++++++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+..+  ++
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence            3444444444444444444 444 444444444444444444444444444444 555555555444444433332  24


Q ss_pred             ccceeccceecccCchhhhhhhhhcCCccc-------CCCCCCeEecccc-chHHHH-HHhccccccEEEeeccCCCccc
Q 042184           80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFG-------SLTNLQKLCIIEA-DSEVLK-ELMKLRQLRKLSIRPQNGNGKD  150 (261)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~~-~~~~~~-~l~~~~~L~~L~l~~~~~~~~~  150 (261)
                      |++|++++|.+++          ..|..+.       .+++|+.|++++| ...++. .+..+++|+.|+++++ ... .
T Consensus       404 L~~L~Ls~N~l~~----------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~-~  471 (636)
T 4eco_A          404 MSAIDFSYNEIGS----------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLT-E  471 (636)
T ss_dssp             EEEEECCSSCTTT----------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCS-B
T ss_pred             cCEEECcCCcCCC----------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCC-C
Confidence            5555555554432          2333444       5566777777776 223333 3445677777777662 222 3


Q ss_pred             hHHHHh--------CCCCCceEEEeeccccccccccccc--CCccccceEEEec-cCcCCCccccCCCcccEEEe-----
Q 042184          151 LCVLIA--------NLENLENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGL-----  214 (261)
Q Consensus       151 ~~~~l~--------~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l-----  214 (261)
                      +|....        ++++|++|++++|.+. ..+ ..+.  .++ +|++|++++ .++.+|..+..+++|+.|++     
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~  548 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS-DDFRATTLP-YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD  548 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC-GGGSTTTCT-TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred             cCHHHhccccccccccCCccEEECcCCcCC-ccC-hhhhhccCC-CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcc
Confidence            333221        1226777777777666 333 2233  667 777777777 77777777777777777777     


Q ss_pred             -ccCCCCCChhHHhccCCcccceEec-ccc
Q 042184          215 -DLSGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                       ++|.+.+.++..+.++++|+.|+++ |.+
T Consensus       549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cccCcccccChHHHhcCCCCCEEECCCCcC
Confidence             3456666666777777778888777 766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=5.1e-24  Score=170.89  Aligned_cols=217  Identities=18%  Similarity=0.171  Sum_probs=170.7

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCccccc-chHhhccccccceecccee
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~   89 (261)
                      ++++.++++++.+|..+  .++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            56888888888777644  468999999999988555 4578889999999999988855 6678888999999999985


Q ss_pred             -cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           90 -FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        90 -~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                       ++.          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus        92 ~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           92 QLRS----------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             TCCC----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             Cccc----------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEEC
Confidence             432          22567888899999999888  333456678889999999987 3333333445778899999999


Q ss_pred             eecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ++|.+.+..+ ..+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+++..+..+..+++|+.|+++ |+++
T Consensus       161 ~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          161 HGNRISSVPE-RAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCcccccCH-HHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            9998765433 4577788 999999999 88854 6778889999999999999998777788899999999999 8775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.3e-23  Score=173.10  Aligned_cols=229  Identities=20%  Similarity=0.243  Sum_probs=146.8

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|........+..+++|++|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~  161 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT  161 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred             hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence            667777888888887777654 46777778888887777776554 5666777777777664332223355555666666


Q ss_pred             ccceecccCc-----------hhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchH
Q 042184           85 VYQYYFTSGS-----------SIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLC  152 (261)
Q Consensus        85 l~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  152 (261)
                      +++|.+++..           .+....+..++. +..+++|+.++++++ ...... +..+++|+.|+++++ .. ...+
T Consensus       162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l-~~~~  237 (347)
T 4fmz_A          162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KI-TDLS  237 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CC-CCCG
T ss_pred             ecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-cc-CCCc
Confidence            6655443210           000001111111 445555555555555 111111 566677777777762 22 2222


Q ss_pred             HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          153 VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       153 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                      . +..+++|++|++++|.+.+.   ..+..++ +|++|++++ .++.++ .+..+++|+.|++++|.+++..+..+..++
T Consensus       238 ~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          238 P-LANLSQLTWLEIGTNQISDI---NAVKDLT-KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCC---GGGTTCT-TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             c-hhcCCCCCEEECCCCccCCC---hhHhcCC-CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            2 67778888888888876543   3466777 888888888 787774 467788899999999988887888888899


Q ss_pred             cccceEec-ccccce
Q 042184          232 NLLQLRLA-GTYNYE  245 (261)
Q Consensus       232 ~L~~L~l~-n~~~~~  245 (261)
                      +|++|+++ |.+++.
T Consensus       312 ~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          312 NLTTLFLSQNHITDI  326 (347)
T ss_dssp             TCSEEECCSSSCCCC
T ss_pred             cCCEEEccCCccccc
Confidence            99999999 877643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.8e-23  Score=172.21  Aligned_cols=216  Identities=19%  Similarity=0.244  Sum_probs=129.2

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence            5667777777777777776655 677777777777777777654 46677777777777777776654 66777777777


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHH----------
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCV----------  153 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------  153 (261)
                      +++|...           .....+..+++|+.|+++++ ....+. +..+++|+.|+++++. . ..++.          
T Consensus       139 l~~n~~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l-~~~~~~~~l~~L~~L  204 (347)
T 4fmz_A          139 LGANHNL-----------SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-I-EDISPLASLTSLHYF  204 (347)
T ss_dssp             CTTCTTC-----------CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-C-CCCGGGGGCTTCCEE
T ss_pred             CCCCCCc-----------ccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-c-cccccccCCCcccee
Confidence            7777432           12233555666666666655 111111 4555556666555411 1 11111          


Q ss_pred             -----------HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          154 -----------LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       154 -----------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                                 .+..+++|++|++++|.+.+..+   +..++ +|++|++++ .++.++ .+..+++|++|++++|.+++
T Consensus       205 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLS-QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             ecccCCCCCCchhhcCCcCCEEEccCCccCCCcc---hhcCC-CCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCC
Confidence                       14455556666666555543322   44555 666666666 555553 35566667777777766665


Q ss_pred             ChhHHhccCCcccceEec-ccccc
Q 042184          222 DPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       222 ~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      .  ..+..+++|+.|+++ |.+++
T Consensus       280 ~--~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          280 I--SVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCG
T ss_pred             C--hhhcCCCCCCEEECcCCcCCC
Confidence            3  345666777777777 66543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.7e-24  Score=189.23  Aligned_cols=220  Identities=19%  Similarity=0.203  Sum_probs=113.4

Q ss_pred             ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR   81 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   81 (261)
                      +.++++|++|++++|.+..++ ..++.+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|.. +..+++|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            455666666666666666333 35666666666666666666433 3346666666666666666655544 35666666


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhcccc-------------------------
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQ-------------------------  135 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~-------------------------  135 (261)
                      +|++++|.+++          ..+..+..+++|+.|++++| ....+  +..+++                         
T Consensus       151 ~L~Ls~N~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l  218 (597)
T 3oja_B          151 TLSMSNNNLER----------IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA  218 (597)
T ss_dssp             EEECCSSCCCB----------CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred             EEEeeCCcCCC----------CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeec
Confidence            66666665542          22334555556666666555 11100  111222                         


Q ss_pred             ---------------ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC
Q 042184          136 ---------------LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL  199 (261)
Q Consensus       136 ---------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l  199 (261)
                                     |+.|+++++ ... . +..+..+++|++|++++|.+.+..+ ..+..++ +|+.|++++ .++.+
T Consensus       219 s~n~l~~~~~~~~~~L~~L~L~~n-~l~-~-~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          219 SHNSINVVRGPVNVELTILKLQHN-NLT-D-TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ-RLERLYISNNRLVAL  293 (597)
T ss_dssp             CSSCCCEEECSCCSCCCEEECCSS-CCC-C-CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCS-SCCEEECTTSCCCEE
T ss_pred             cCCcccccccccCCCCCEEECCCC-CCC-C-ChhhccCCCCCEEECCCCccCCCCH-HHhcCcc-CCCEEECCCCCCCCC
Confidence                           222222221 111 1 1334555566666666655554433 3345555 566666655 55555


Q ss_pred             CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184          200 PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                      |..+..+++|+.|++++|.++. ++..+..+++|+.|+++ |.+
T Consensus       294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred             CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCC
Confidence            5544455556666665555553 33334444555555555 444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.3e-24  Score=196.81  Aligned_cols=227  Identities=13%  Similarity=0.159  Sum_probs=166.1

Q ss_pred             CCccccCccccceeecCCCCCCC------------------Cccccc--CcccccEEEecCCCce-ecccccCCCCCCcE
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVY------------------LPEGVG--SLLNLHYLSLRNKKVK-IIPKSIGNLLGLES   59 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~------------------~~~~~~--~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~   59 (261)
                      ||..|+++++|++|++++|.+..                  +|..++  ++++|++|++++|.+. .+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            47789999999999999999997                  898887  9999999999999876 88988999999999


Q ss_pred             EeCCCCc-cc--ccchHhhccc-------cccceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc-chHH
Q 042184           60 LDLKNTL-VR--ELPVEIRNLK-------KLRYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA-DSEV  126 (261)
Q Consensus        60 L~l~~~~-~~--~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~  126 (261)
                      |++++|. ++  .+|..+..++       +|++|++++|.++           .+|.  .++.+++|+.|++++| ...+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----------~ip~~~~l~~L~~L~~L~Ls~N~l~~l  588 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----------EFPASASLQKMVKLGLLDCVHNKVRHL  588 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----------BCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----------ccCChhhhhcCCCCCEEECCCCCcccc
Confidence            9999998 77  4787777666       9999999999764           6777  7888889999999888 3355


Q ss_pred             HHHHhccccccEEEeeccCCCccchHHHHhCCCC-CceEEEeecccccccccccccCCc-cccceEEEec-cCcCC-C--
Q 042184          127 LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN-LENLIVLMKSKEEVLDLQSLSNPP-QYLQRLYFKG-DMKKL-P--  200 (261)
Q Consensus       127 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~-~l~~l-~--  200 (261)
                      + .++.+++|+.|++++ +... .+|..+..+++ |++|++++|.+. ..+ ..+...+ ++|+.|++++ .++.. |  
T Consensus       589 p-~~~~L~~L~~L~Ls~-N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDY-NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             C-CCCTTSEESEEECCS-SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             h-hhcCCCcceEEECcC-Cccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccccc
Confidence            5 777888888888887 2222 67777888887 888888888776 333 2233332 0377777776 55422 2  


Q ss_pred             -cccc--CCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          201 -DWIF--KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       201 -~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                       ..+.  .+++|+.|++++|.++......+..+++|+.|+++ |.++
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence             1122  23466666666666664333334456666666666 5554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=6.5e-24  Score=177.63  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=180.1

Q ss_pred             ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhcccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLKK   79 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~   79 (261)
                      ..|..+++|++|++++|.+..++ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++
T Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A           87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            47888999999999999988554 5678899999999999999887766 47899999999999988855 445788899


Q ss_pred             ccceeccceecccCc-----------------------------hhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHH
Q 042184           80 LRYLMVYQYYFTSGS-----------------------------SIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKE  129 (261)
Q Consensus        80 L~~L~l~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~  129 (261)
                      |++|++++|.+++..                             .+..+.+..++.  ...++|+.|++++| ... ...
T Consensus       167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~~~  243 (390)
T 3o6n_A          167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-TAW  243 (390)
T ss_dssp             CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-CGG
T ss_pred             CCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-cHH
Confidence            999999998876420                             000000000111  12346777777777 222 246


Q ss_pred             HhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCc
Q 042184          130 LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKN  208 (261)
Q Consensus       130 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~  208 (261)
                      +..+++|+.|++++ +......+..+..+++|++|++++|.+.+...  .+..++ +|++|++++ .++.+|..+..+++
T Consensus       244 l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~-~L~~L~L~~n~l~~~~~~~~~l~~  319 (390)
T 3o6n_A          244 LLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIP-TLKVLDLSHNHLLHVERNQPQFDR  319 (390)
T ss_dssp             GGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCSSCCCEEEC--SSSCCT-TCCEEECCSSCCCCCGGGHHHHTT
T ss_pred             HcCCCCccEEECCC-CcCCCcChhHccccccCCEEECCCCcCcccCc--ccCCCC-CCCEEECCCCcceecCccccccCc
Confidence            78899999999998 44455567788999999999999998875432  346688 999999999 99999988888999


Q ss_pred             ccEEEeccCCCCCChhHHhccCCcccceEec-cccccee
Q 042184          209 VIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~  246 (261)
                      |+.|++++|.+++..   +..+++|+.|+++ |+++.+.
T Consensus       320 L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          320 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence            999999999998753   6789999999999 9886543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=5.1e-24  Score=192.98  Aligned_cols=227  Identities=11%  Similarity=0.151  Sum_probs=131.1

Q ss_pred             ccceeecCCCCCCCCcc--cccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccc-ccceecc
Q 042184           10 LMKVLDLEDAPVVYLPE--GVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKK-LRYLMVY   86 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~   86 (261)
                      +|++|++++|.+..+|.  .++.+++|+.|++++|.++.+| .++.+++|++|++++|.+..+|..+..+++ |+.|+++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence            55555555555554444  4555555555555555544444 444455555555555554444444444444 5555554


Q ss_pred             ceecccC--------------chhhhh----hhhhcCCccc--CCCCCCeEecccc-chHHHHH-HhccccccEEEeecc
Q 042184           87 QYYFTSG--------------SSIAEE----AAAKLHPGFG--SLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLSIRPQ  144 (261)
Q Consensus        87 ~~~~~~~--------------~~~~~~----~~~~l~~~~~--~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~l~~~  144 (261)
                      +|.++..              +.+..+    ....++..+.  .+++|+.|++++| ...++.. +..+++|+.|+++++
T Consensus       628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred             CCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence            4443210              000000    1112222222  2346778888777 3344444 346788888888772


Q ss_pred             CCCccchHHHHh--------CCCCCceEEEeeccccccccccccc--CCccccceEEEec-cCcCCCccccCCCcccEEE
Q 042184          145 NGNGKDLCVLIA--------NLENLENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLG  213 (261)
Q Consensus       145 ~~~~~~~~~~l~--------~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~  213 (261)
                       .. ..+|..+.        ++++|++|++++|.+. ..+ ..+.  .++ +|+.|++++ .++.+|..+..+++|+.|+
T Consensus       708 -~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp-~~l~~~~l~-~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          708 -LM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS-DDFRATTLP-YLSNMDVSYNCFSSFPTQPLNSSQLKAFG  782 (876)
T ss_dssp             -CC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC-GGGSTTTCT-TCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred             -cC-CccChHHhccccccccccCCccEEECCCCCCc-cch-HHhhhccCC-CcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence             22 24444332        2337888888888776 333 2343  677 888888888 7888887788888888888


Q ss_pred             ecc------CCCCCChhHHhccCCcccceEec-ccc
Q 042184          214 LDL------SGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       214 l~~------~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                      +++      |.+.+.++..+.++++|+.|+++ |.+
T Consensus       783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            865      66677777778888888888888 776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=7.2e-24  Score=183.67  Aligned_cols=87  Identities=21%  Similarity=0.291  Sum_probs=64.5

Q ss_pred             ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc--cchHhhcccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE--LPVEIRNLKK   79 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~   79 (261)
                      ..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..  .+++|++|++++|.+..  +|..++.+++
T Consensus        39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence            4567788888888888887744 56777888888888888887777665  67788888888887763  5567777777


Q ss_pred             ccceeccceecc
Q 042184           80 LRYLMVYQYYFT   91 (261)
Q Consensus        80 L~~L~l~~~~~~   91 (261)
                      |++|++++|.++
T Consensus       117 L~~L~L~~n~l~  128 (520)
T 2z7x_B          117 LKFLGLSTTHLE  128 (520)
T ss_dssp             CCEEEEEESSCC
T ss_pred             ceEEEecCcccc
Confidence            777777766553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=8e-24  Score=186.61  Aligned_cols=222  Identities=17%  Similarity=0.085  Sum_probs=147.2

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccccc---chHhhccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVREL---PVEIRNLKKL   80 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L   80 (261)
                      +..+++|++|++++|.+..+| .+ .+++|+.|++++|... ..  .+..+++|++|++++|.+...   +..+..+++|
T Consensus       303 l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             ccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence            445555666666666555555 23 5556666666655322 22  345677888888888877633   6777788888


Q ss_pred             cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhccccccEEEeeccCCCccchHHHHhC
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKLRQLRKLSIRPQNGNGKDLCVLIAN  157 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  157 (261)
                      ++|++++|.++           .++..+..+++|+.|++++|  ....+ ..+..+++|+.|++++ +......+..+..
T Consensus       379 ~~L~L~~n~l~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~  446 (606)
T 3vq2_A          379 RHLDLSFNGAI-----------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-TNTKIDFDGIFLG  446 (606)
T ss_dssp             CEEECCSCSEE-----------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT-SCCEECCTTTTTT
T ss_pred             cEeECCCCccc-----------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC-CCCCccchhhhcC
Confidence            88888888554           45677777888888888877  32233 4567777888888876 3344445566777


Q ss_pred             CCCCceEEEeecccccccccccccCCccccceEEEec-cCcC-CCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184          158 LENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK-LPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ  235 (261)
Q Consensus       158 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  235 (261)
                      +++|++|++++|.+.+......+..++ +|++|++++ .++. .|..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus       447 l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          447 LTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            777888887777766532224466677 777777777 6664 3455667777777777777777766667777777777


Q ss_pred             eEec-cccc
Q 042184          236 LRLA-GTYN  243 (261)
Q Consensus       236 L~l~-n~~~  243 (261)
                      |+++ |.++
T Consensus       526 L~l~~N~l~  534 (606)
T 3vq2_A          526 LDCSFNRIE  534 (606)
T ss_dssp             EECTTSCCC
T ss_pred             EECCCCcCc
Confidence            7777 6664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=7.9e-24  Score=171.43  Aligned_cols=219  Identities=16%  Similarity=0.153  Sum_probs=182.6

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc---chHhhccccccceeccc
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL---PVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~   87 (261)
                      +.++.++++++.+|..+.  ++|++|++++|.++.+|.. +..+++|++|++++|.+...   +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            578889989998887554  7899999999999988765 68999999999999998743   67788899999999999


Q ss_pred             eecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH--HHHhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL--KELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL  164 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  164 (261)
                      |.++           .++..+..+++|+.|++++| ....+  ..+..+++|+.|++++ +......+..+..+++|++|
T Consensus        88 n~i~-----------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           88 NGVI-----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSEE-----------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEE
T ss_pred             Cccc-----------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEE
Confidence            9654           57778899999999999999 32222  4688899999999988 34444556678889999999


Q ss_pred             EEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cc
Q 042184          165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GT  241 (261)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~  241 (261)
                      ++++|.+.+......+..++ +|++|++++ .++.+ +..+..+++|++|++++|.+++.....+..+++|+.|+++ |.
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             ECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            99999887522224578888 999999999 88865 6678889999999999999998776678899999999999 98


Q ss_pred             ccce
Q 042184          242 YNYE  245 (261)
Q Consensus       242 ~~~~  245 (261)
                      +++.
T Consensus       235 l~~~  238 (306)
T 2z66_A          235 IMTS  238 (306)
T ss_dssp             CCBC
T ss_pred             Cccc
Confidence            8654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=3.4e-24  Score=175.59  Aligned_cols=218  Identities=17%  Similarity=0.158  Sum_probs=162.6

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccc
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~   87 (261)
                      ++++++++++.+..+|..+.  ++++.|++++|.++.+ |..+..+++|++|++++|.++.+ +..+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            79999999999998887664  7899999999999955 45789999999999999999955 67889999999999999


Q ss_pred             eecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCC-ccchHHHHhCC------
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGN-GKDLCVLIANL------  158 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~l~~~------  158 (261)
                      |.++           .+|..+.  ++|+.|++++| ... .+..+..+++|+.|+++++... ....+..+..+      
T Consensus       112 n~l~-----------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~  178 (332)
T 2ft3_A          112 NHLV-----------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR  178 (332)
T ss_dssp             SCCC-----------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred             CcCC-----------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence            9765           4454443  67777777777 222 2334667777777777662111 01112222222      


Q ss_pred             --------------CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184          159 --------------ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       159 --------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~  222 (261)
                                    ++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|++|++++|.++ .
T Consensus       179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             CcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence                          466777777776654433 4577788 899999998 8886654 5778899999999999888 4


Q ss_pred             hhHHhccCCcccceEec-ccccce
Q 042184          223 PIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       223 ~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      ++..+..+++|++|+++ |.++..
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             cChhhhcCccCCEEECCCCCCCcc
Confidence            55668889999999999 888644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.2e-23  Score=179.60  Aligned_cols=127  Identities=16%  Similarity=0.239  Sum_probs=104.1

Q ss_pred             CCccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLK   78 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~   78 (261)
                      ||..+.  ++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..  .++
T Consensus        15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~   90 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV   90 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred             cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence            344444  78999999999999655 6889999999999999999954 77899999999999999999988776  899


Q ss_pred             cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccc--cEEEeec
Q 042184           79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQL--RKLSIRP  143 (261)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L--~~L~l~~  143 (261)
                      +|++|++++|.+++         ..+|..++.+++|+.|++++|  ..   ..+..+++|  +.|++++
T Consensus        91 ~L~~L~L~~N~l~~---------~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           91 NLKHLDLSFNAFDA---------LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             CCSEEECCSSCCSS---------CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             CccEEeccCCcccc---------ccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            99999999998753         246788999999999999988  32   234555566  7776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=4.2e-23  Score=180.50  Aligned_cols=239  Identities=19%  Similarity=0.215  Sum_probs=161.6

Q ss_pred             ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc--chHhhcccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL--PVEIRNLKK   79 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~   79 (261)
                      ..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..  .+++|++|++++|.+..+  |..+..+++
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence            5678888888899988888844 56788888888888888888877766  788888888888888754  467888888


Q ss_pred             ccceeccceecccC-------c-----hhhhh------------------------------------------------
Q 042184           80 LRYLMVYQYYFTSG-------S-----SIAEE------------------------------------------------   99 (261)
Q Consensus        80 L~~L~l~~~~~~~~-------~-----~~~~~------------------------------------------------   99 (261)
                      |++|++++|.+++.       +     .+..+                                                
T Consensus       148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             ccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            88888877765431       0     00000                                                


Q ss_pred             -----------------------------------------------------------hh-hhcCCcc-----------
Q 042184          100 -----------------------------------------------------------AA-AKLHPGF-----------  108 (261)
Q Consensus       100 -----------------------------------------------------------~~-~~l~~~~-----------  108 (261)
                                                                                 .. ..+|..+           
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence                                                                       00 0122221           


Q ss_pred             ------------------------------------------cCCCCCCeEecccc--chHHHHHHhccccccEEEeecc
Q 042184          109 ------------------------------------------GSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQ  144 (261)
Q Consensus       109 ------------------------------------------~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~  144 (261)
                                                                ..+++|+.|++++|  .+..+..+..+++|+.|++++ 
T Consensus       308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-  386 (562)
T 3a79_B          308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR-  386 (562)
T ss_dssp             EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS-
T ss_pred             ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC-
Confidence                                                      45567777777777  444556667777777777776 


Q ss_pred             CCCcc--chHHHHhCCCCCceEEEeeccccccccccccc---------------------CCccccceEEEec-cCcCCC
Q 042184          145 NGNGK--DLCVLIANLENLENLIVLMKSKEEVLDLQSLS---------------------NPPQYLQRLYFKG-DMKKLP  200 (261)
Q Consensus       145 ~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---------------------~~~~~L~~L~l~~-~l~~l~  200 (261)
                      +....  ..+..+..+++|++|++++|.+.+..+...+.                     .++++|++|++++ .++.+|
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC
Confidence            22222  34556777788888888887766523322122                     2212677777777 777777


Q ss_pred             ccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          201 DWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      ..+..+++|+.|++++|.++......+..+++|+.|+++ |++..
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            777778888888888888885444447788888888888 87753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.1e-23  Score=185.31  Aligned_cols=231  Identities=15%  Similarity=0.125  Sum_probs=181.8

Q ss_pred             CccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLK   78 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~   78 (261)
                      +..|..+++|++|++++|.+..++ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+ +..+..++
T Consensus        92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  171 (597)
T 3oja_B           92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  171 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence            357889999999999999999655 5678999999999999999977765 58899999999999998855 44688899


Q ss_pred             cccceeccceecccCchhhhhhhhhcCC------------cc---------------------cCCCCCCeEeccccchH
Q 042184           79 KLRYLMVYQYYFTSGSSIAEEAAAKLHP------------GF---------------------GSLTNLQKLCIIEADSE  125 (261)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~------------~~---------------------~~~~~L~~L~l~~~~~~  125 (261)
                      +|++|++++|.+++.      ....++.            .+                     ...++|+.|++++|.-.
T Consensus       172 ~L~~L~L~~N~l~~~------~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          172 SLQNLQLSSNRLTHV------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT  245 (597)
T ss_dssp             TCCEEECTTSCCSBC------CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC
T ss_pred             cCcEEECcCCCCCCc------ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCC
Confidence            999999999987642      1111110            00                     11235677777777111


Q ss_pred             HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcccc
Q 042184          126 VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF  204 (261)
Q Consensus       126 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~  204 (261)
                      .+..+..+++|+.|++++ +......|..+..+++|++|++++|.+.+...  .+..+| +|+.|++++ .++.+|..+.
T Consensus       246 ~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~-~L~~L~Ls~N~l~~i~~~~~  321 (597)
T 3oja_B          246 DTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIP-TLKVLDLSHNHLLHVERNQP  321 (597)
T ss_dssp             CCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECTTSCCCEEEC--SSSCCT-TCCEEECCSSCCCCCGGGHH
T ss_pred             CChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCCEEECCCCCCCCCCc--ccccCC-CCcEEECCCCCCCccCcccc
Confidence            135688899999999998 45555667889999999999999998876432  356688 999999999 9999998888


Q ss_pred             CCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184          205 KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      .+++|+.|++++|.+++..   +..+++|+.|+++ |+++.+
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            8999999999999998753   6778999999999 987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=185.63  Aligned_cols=229  Identities=17%  Similarity=0.154  Sum_probs=181.4

Q ss_pred             CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceeccccc--------------------CCCCCCcEEe
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSI--------------------GNLLGLESLD   61 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l--------------------~~l~~L~~L~   61 (261)
                      +..+..+++|++|++++|.+..+|..+..+ +|+.|++++|.+..+|...                    ..+++|++|+
T Consensus       275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~  353 (570)
T 2z63_A          275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD  353 (570)
T ss_dssp             TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred             hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence            455677888888888888777777777666 7777777777665444311                    4678888899


Q ss_pred             CCCCccccc---chHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhcccc
Q 042184           62 LKNTLVREL---PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKLRQ  135 (261)
Q Consensus        62 l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~~~  135 (261)
                      +++|.+...   +..+..+++|++|++++|.++           .++..+..+++|+.|++++|  ....+ ..+..+++
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-----------EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             CcCCccCccccccccccccCccCEEECCCCccc-----------cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            988887743   677888999999999998654           45556889999999999998  22222 45788999


Q ss_pred             ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc-cccccccccCCccccceEEEec-cCcCC-CccccCCCcccEE
Q 042184          136 LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE-EVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRL  212 (261)
Q Consensus       136 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L  212 (261)
                      |+.|++++ +......+..+..+++|++|++++|.+. +..+ ..+..++ +|++|++++ .++.+ |..+..+++|++|
T Consensus       423 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          423 LIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEEeCcC-CcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhccc-CCCEEECCCCccccCChhhhhcccCCCEE
Confidence            99999988 3444556777889999999999999876 3444 5578888 999999999 88865 7778899999999


Q ss_pred             EeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184          213 GLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      ++++|.+++..+..+.++++|+.|+++ |+++.+
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            999999998877788999999999999 988654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=9.8e-24  Score=181.20  Aligned_cols=213  Identities=16%  Similarity=0.121  Sum_probs=172.6

Q ss_pred             CccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceec
Q 042184            7 NFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV   85 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l   85 (261)
                      .+++|++|++++|.+..+ |..++.+++|++|++++|.++..++ +..+++|++|++++|.++.++.    .++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            456899999999999955 4789999999999999999985554 8899999999999999886653    388999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh-CCCCCc
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA-NLENLE  162 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~  162 (261)
                      ++|.+++           ++.  ..+++|+.|++++|  ....+..++.+++|+.|++++ +......+..+. .+++|+
T Consensus       107 ~~N~l~~-----------~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A          107 ANNNISR-----------VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             CSSCCCC-----------EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCC
T ss_pred             cCCcCCC-----------CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCccc
Confidence            9997764           222  24678999999998  444555678889999999988 444444555665 788999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n  240 (261)
                      +|++++|.+.+..+   ...++ +|+.|++++ .++.+|..+..+++|+.|++++|.+++ ++..+..+++|+.|+++ |
T Consensus       173 ~L~Ls~N~l~~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          173 HLNLQYNFIYDVKG---QVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EEECTTSCCCEEEC---CCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             EEecCCCccccccc---cccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            99999998876533   34577 999999999 898888888889999999999999885 55567888999999999 8


Q ss_pred             ccc
Q 042184          241 TYN  243 (261)
Q Consensus       241 ~~~  243 (261)
                      .+.
T Consensus       248 ~l~  250 (487)
T 3oja_A          248 GFH  250 (487)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=7.4e-24  Score=172.49  Aligned_cols=215  Identities=16%  Similarity=0.107  Sum_probs=159.4

Q ss_pred             ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      +..+++|++|++++|.+..++ ..+..+++|++|++++|.++..+. +..+++|++|++++|.++.++    ..++|++|
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L  104 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETL  104 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence            345679999999999999554 688999999999999999985554 889999999999999988655    33788899


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHH-hCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLI-ANLEN  160 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~  160 (261)
                      ++++|.+++           ++.  ..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+ ..+++
T Consensus       105 ~l~~n~l~~-----------~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A          105 HAANNNISR-----------VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDT  170 (317)
T ss_dssp             ECCSSCCSE-----------EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTT
T ss_pred             ECCCCccCC-----------cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCc
Confidence            998887653           222  23567888888888  333344567778888888877 33333333444 46778


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      |++|++++|.+.+...   ...++ +|++|++++ .++.++..+..+++|+.|++++|.+++ ++..+..+++|+.|+++
T Consensus       171 L~~L~L~~N~l~~~~~---~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          171 LEHLNLQYNFIYDVKG---QVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CCEEECTTSCCCEEEC---CCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred             CCEEECCCCcCccccc---ccccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEcc
Confidence            8888888887765422   33466 888888888 787777777778888888888888774 45556777888888888


Q ss_pred             -cccc
Q 042184          240 -GTYN  243 (261)
Q Consensus       240 -n~~~  243 (261)
                       |.++
T Consensus       246 ~N~~~  250 (317)
T 3o53_A          246 GNGFH  250 (317)
T ss_dssp             TCCCB
T ss_pred             CCCcc
Confidence             7775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=2e-22  Score=172.44  Aligned_cols=226  Identities=19%  Similarity=0.233  Sum_probs=137.4

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..++. +..+++|++|
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            36788999999999999887776 8889999999999999887666 8889999999999998887765 7888999999


Q ss_pred             eccceecccCchhhh----------hhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchH
Q 042184           84 MVYQYYFTSGSSIAE----------EAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLC  152 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  152 (261)
                      ++++|.+++...+..          +.... ...+..+++|+.|++++| .... ..+..+++|+.|+++++ ......+
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTD-LKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNN-QISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCC-CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccC-chhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCC-ccccccc
Confidence            999988764200000          00000 012455666666666666 1111 22455566666666551 1111111


Q ss_pred             HHHhCCCCCceEEEeecc----------------------cccccccccccCCccccceEEEec-cCcCCCccccCCCcc
Q 042184          153 VLIANLENLENLIVLMKS----------------------KEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNV  209 (261)
Q Consensus       153 ~~l~~~~~L~~L~l~~n~----------------------~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L  209 (261)
                        ++.+++|++|++++|.                      +.+..+   +..++ +|+.|++++ .++.++. +..+++|
T Consensus       217 --~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L  289 (466)
T 1o6v_A          217 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLT-KLTELKLGANQISNISP-LAGLTAL  289 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCT-TCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             --ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCC-CCCEEECCCCccCcccc-ccCCCcc
Confidence              3334444444444443                      332221   33444 555555555 5554443 4455666


Q ss_pred             cEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          210 IRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      +.|++++|.+++..+  +..+++|+.|+++ |.+++
T Consensus       290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            666666666554332  5566666666666 65543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=9.5e-24  Score=186.12  Aligned_cols=222  Identities=18%  Similarity=0.141  Sum_probs=179.8

Q ss_pred             CccccceeecCCCCCC-CCcccccCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184            7 NFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY   82 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   82 (261)
                      .+++|++|++++|... ..  .+..+++|++|++++|.++.+   |..+..+++|++|++++|.+..++..+..+++|++
T Consensus       326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~  403 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH  403 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred             CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence            7889999999999544 33  456889999999999998743   67788899999999999998888888888999999


Q ss_pred             eeccceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCcc-chHHHHhCC
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGK-DLCVLIANL  158 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~  158 (261)
                      |++++|.+++          ..+ ..+..+++|+.|++++|  ....+..+..+++|+.|+++++ ...+ ..+..+..+
T Consensus       404 L~l~~n~l~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          404 LDFQHSTLKR----------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANT  472 (606)
T ss_dssp             EECTTSEEES----------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred             eECCCCccCC----------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccC
Confidence            9999998764          223 57788999999999998  4456667888999999999872 2232 357778889


Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCC-cccc
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP-NLLQ  235 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~  235 (261)
                      ++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ |..+..+++|+.|++++|.++. ++..+..++ +|++
T Consensus       473 ~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISW-GVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAF  549 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCE
T ss_pred             CCCCEEECCCCcCCccCh-hhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcE
Confidence            999999999998876555 4577888 999999999 88855 6778889999999999999884 455577886 5999


Q ss_pred             eEec-ccccc
Q 042184          236 LRLA-GTYNY  244 (261)
Q Consensus       236 L~l~-n~~~~  244 (261)
                      ++++ |++..
T Consensus       550 l~l~~N~~~c  559 (606)
T 3vq2_A          550 FNLTNNSVAC  559 (606)
T ss_dssp             EECCSCCCCC
T ss_pred             EEccCCCccc
Confidence            9999 88753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4.7e-23  Score=164.51  Aligned_cols=124  Identities=23%  Similarity=0.241  Sum_probs=57.5

Q ss_pred             ccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceecc
Q 042184           10 LMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVY   86 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~   86 (261)
                      +|++|++++|.++.++ ..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            3555555555555332 24445555555555555554332 23445555555555555554322 334455555555555


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-c-h-HHHHHHhccccccEEEeec
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-D-S-EVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~-~-~~~~~l~~~~~L~~L~l~~  143 (261)
                      +|.+++          ..+..+..+++|+.|++++| . . .++..+..+++|+.|++++
T Consensus       109 ~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A          109 ETNLAS----------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             TSCCCC----------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCccc----------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence            554432          11113444555555555554 1 1 1334444445555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=7.7e-23  Score=174.26  Aligned_cols=208  Identities=19%  Similarity=0.214  Sum_probs=134.2

Q ss_pred             ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY   82 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   82 (261)
                      .+++++++|++|++++|.++.+| .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.++  +..+++|++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            35667888888888888888776 5778888888888888888765  778888888888888887664  677888888


Q ss_pred             eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      |++++|.+++           ++  ++.+++|+.|++++| ...+  .++.+++|+.|+++++. ..+.+  .+..+++|
T Consensus       111 L~L~~N~l~~-----------l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~-~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          111 LNCDTNKLTK-----------LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNK-KITKL--DVTPQTQL  172 (457)
T ss_dssp             EECCSSCCSC-----------CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCS-CCCCC--CCTTCTTC
T ss_pred             EECCCCcCCe-----------ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCC-ccccc--ccccCCcC
Confidence            8888887652           22  667777777777777 2222  25566777777776621 12222  24556666


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-  239 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-  239 (261)
                      ++|++++|.+.+. +   +..++ +|+.|++++ .++.++  +..+++|+.|++++|.+++. +  +..+++|+.|+++ 
T Consensus       173 ~~L~ls~n~l~~l-~---l~~l~-~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D---VSQNK-LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CEEECCSSCCCCC-C---CTTCT-TCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred             CEEECCCCcccee-c---cccCC-CCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeC
Confidence            6666666655442 2   34455 566666655 555442  44555555555555555542 2  4455555555555 


Q ss_pred             cccc
Q 042184          240 GTYN  243 (261)
Q Consensus       240 n~~~  243 (261)
                      |.++
T Consensus       243 N~l~  246 (457)
T 3bz5_A          243 NPLT  246 (457)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            5544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=9.4e-23  Score=163.50  Aligned_cols=202  Identities=19%  Similarity=0.196  Sum_probs=168.6

Q ss_pred             ccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCc-cccc-chHhhccccccce
Q 042184            8 FKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTL-VREL-PVEIRNLKKLRYL   83 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L   83 (261)
                      .++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            468999999999999655 5788999999999999999854 6788999999999999997 7765 6678899999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      ++++|.+++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|
T Consensus       111 ~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          111 HLDRCGLQE----------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSL  179 (285)
T ss_dssp             ECTTSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred             ECCCCcCCE----------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcccc
Confidence            999998763          33567889999999999999  333344578899999999998 33333334468889999


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      ++|++++|.+.+..+ ..+..++ +|+.|++++ .++.++. .+..+++|+.|++++|.+...
T Consensus       180 ~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHP-HAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             CEEECCCCcccccCH-hHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            999999998876655 5578888 999999999 9998775 478899999999999998764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=170.38  Aligned_cols=209  Identities=20%  Similarity=0.162  Sum_probs=169.4

Q ss_pred             ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch--Hhhccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV--EIRNLK   78 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~--~~~~l~   78 (261)
                      ..|.++++|++|++++|.++.+ +..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..++.  .+..++
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred             HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence            3688999999999999999954 56789999999999999999977765 7899999999999999997776  678899


Q ss_pred             cccceecccee-cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHH-
Q 042184           79 KLRYLMVYQYY-FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVL-  154 (261)
Q Consensus        79 ~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-  154 (261)
                      +|++|++++|. ++.          ..+..+..+++|+.|++++|  ....+..+..+++|++|++++ +. ...++.. 
T Consensus       150 ~L~~L~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~-l~~~~~~~  217 (353)
T 2z80_A          150 KLQILRVGNMDTFTK----------IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-KQ-HILLLEIF  217 (353)
T ss_dssp             TCCEEEEEESSSCCE----------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SC-STTHHHHH
T ss_pred             CCcEEECCCCccccc----------cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC-Cc-cccchhhh
Confidence            99999999984 331          23467888999999999998  444567788899999999988 22 3444443 


Q ss_pred             HhCCCCCceEEEeeccccccccc------------------------------ccccCCccccceEEEec-cCcCCCccc
Q 042184          155 IANLENLENLIVLMKSKEEVLDL------------------------------QSLSNPPQYLQRLYFKG-DMKKLPDWI  203 (261)
Q Consensus       155 l~~~~~L~~L~l~~n~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~-~l~~l~~~~  203 (261)
                      +..+++|++|++++|.+.+....                              ..+..++ +|++|++++ .++.+|..+
T Consensus       218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCCCCCTTT
T ss_pred             hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCCCCCCccCHHH
Confidence            45688999999999977653210                              1245677 999999999 999999875


Q ss_pred             -cCCCcccEEEeccCCCCCChh
Q 042184          204 -FKPKNVIRLGLDLSGLTEDPI  224 (261)
Q Consensus       204 -~~~~~L~~L~l~~~~~~~~~~  224 (261)
                       ..+++|++|++++|.+++..+
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCC
Confidence             789999999999999988653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=184.41  Aligned_cols=239  Identities=17%  Similarity=0.196  Sum_probs=169.2

Q ss_pred             CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccc--cCCCCCCcEEeCCCCccccc--chHhh
Q 042184            2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKS--IGNLLGLESLDLKNTLVREL--PVEIR   75 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~--l~~l~~L~~L~l~~~~~~~~--~~~~~   75 (261)
                      |.+|.++++|++|++++|.+. ..|..++++++|++|++++|.++ .+|..  +..+++|++|++++|.+..+  +..++
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            567899999999999999998 55788899999999999999987 45554  78899999999999988743  45788


Q ss_pred             ccccccceeccceecccCchhhhhhh----------------hhcCCcccCCCC------CCeEecccc--chHHHHHHh
Q 042184           76 NLKKLRYLMVYQYYFTSGSSIAEEAA----------------AKLHPGFGSLTN------LQKLCIIEA--DSEVLKELM  131 (261)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~------L~~L~l~~~--~~~~~~~l~  131 (261)
                      ++++|++|++++|.+++....+-...                ...+..+..+++      |+.|++++|  ....+..+.
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred             hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence            99999999999988765211100000                011223333333      788888776  222222211


Q ss_pred             c--------------------------------------cccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccc
Q 042184          132 K--------------------------------------LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEE  173 (261)
Q Consensus       132 ~--------------------------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  173 (261)
                      .                                      .++|+.|++++ +......+..+..+++|++|++++|.+.+
T Consensus       226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  304 (844)
T 3j0a_A          226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINK  304 (844)
T ss_dssp             GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred             hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC-CcccccChhhhhcCCCCCEEECCCCcCCC
Confidence            1                                      25677777766 33333445567778888888888887765


Q ss_pred             ccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          174 VLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ..+ ..+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|+++ |.++
T Consensus       305 ~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          305 IAD-EAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             ECT-TTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCh-HHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            544 4577777 888888888 77754 5567778888888888888877666667778888888888 7765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.7e-22  Score=176.62  Aligned_cols=121  Identities=21%  Similarity=0.240  Sum_probs=97.2

Q ss_pred             cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      +++++|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            78999999999999665 6889999999999999999854 67788999999999999999988776  89999999999


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccc--cEEEeec
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQL--RKLSIRP  143 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L--~~L~l~~  143 (261)
                      +|++++         ...|..++.+++|+.|++++|  ...   .+..+++|  +.|++++
T Consensus       130 ~N~l~~---------l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          130 FNDFDV---------LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             SSCCSB---------CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             CCCccc---------cCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            997753         134578889999999999988  221   23344444  6666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=7.6e-23  Score=178.31  Aligned_cols=154  Identities=23%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             cccceeecCCCCCCC-CcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184            9 KLMKVLDLEDAPVVY-LPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l   85 (261)
                      ++|++|++++|.++. .+..+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..++.. +..+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            456666666666663 334556666666666666666533 34556666666666666666644433 566666666666


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEec-------------------------ccc--chHHHHHHhccccccE
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCI-------------------------IEA--DSEVLKELMKLRQLRK  138 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l-------------------------~~~--~~~~~~~l~~~~~L~~  138 (261)
                      ++|.+++.         ..+..++.+++|+.|++                         ++|  ....+..++.+++|++
T Consensus       106 s~n~l~~~---------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A          106 MGNPYQTL---------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             TTCCCSSS---------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             CCCccccc---------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence            66655320         22334444444555544                         444  2223344444555555


Q ss_pred             EEeeccCCCccchHHH-HhCCCCCceEEEeeccccc
Q 042184          139 LSIRPQNGNGKDLCVL-IANLENLENLIVLMKSKEE  173 (261)
Q Consensus       139 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~  173 (261)
                      |++.+  ......+.. +..+++|++|++++|.+.+
T Consensus       177 L~l~~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          177 LTLHL--SESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EEEEC--SBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             Eeccc--CcccccchhhHhhcccccEEEccCCcccc
Confidence            55544  111223333 3467889999998887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=2.8e-22  Score=171.46  Aligned_cols=216  Identities=23%  Similarity=0.333  Sum_probs=173.4

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      .+.++++|++|++++|.+..++ .+..+++|+.|++++|.++.++. ++.+++|++|++++|.+..++ .+..+++|++|
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L  248 (466)
T 1o6v_A          172 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDL  248 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEE
Confidence            3677888999999998888664 37788899999999988885544 677889999999999888664 57788999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      ++++|.+++           .+. +..+++|+.|++++| ....+. +..+++|+.|+++++ ... ..+. +..+++|+
T Consensus       249 ~l~~n~l~~-----------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~-~~~~-~~~l~~L~  312 (466)
T 1o6v_A          249 DLANNQISN-----------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLE-DISP-ISNLKNLT  312 (466)
T ss_dssp             ECCSSCCCC-----------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCS-CCGG-GGGCTTCS
T ss_pred             ECCCCcccc-----------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-ccc-Cchh-hcCCCCCC
Confidence            999997753           222 788899999999998 322332 788999999999882 222 2322 78899999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n  240 (261)
                      +|++++|.+.+..+   +..++ +|++|++++ .++.++ .+..+++|+.|++++|.+++..+  +..+++|+.|+++ |
T Consensus       313 ~L~L~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          313 YLTLYFNNISDISP---VSSLT-KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             EEECCSSCCSCCGG---GGGCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             EEECcCCcCCCchh---hccCc-cCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            99999998876654   56788 999999999 888774 57889999999999999998765  8899999999999 8


Q ss_pred             cccce
Q 042184          241 TYNYE  245 (261)
Q Consensus       241 ~~~~~  245 (261)
                      .+++.
T Consensus       386 ~~~~~  390 (466)
T 1o6v_A          386 AWTNA  390 (466)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            88763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=4.5e-24  Score=178.36  Aligned_cols=237  Identities=17%  Similarity=0.154  Sum_probs=179.1

Q ss_pred             CccccCccccceeecCCCCCC-C----CcccccCcccccEEEecCCCce----eccccc-------CCCCCCcEEeCCCC
Q 042184            2 NTSIANFKLMKVLDLEDAPVV-Y----LPEGVGSLLNLHYLSLRNKKVK----IIPKSI-------GNLLGLESLDLKNT   65 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~-~----~~~~~~~l~~L~~L~l~~~~i~----~~~~~l-------~~l~~L~~L~l~~~   65 (261)
                      +..+..+++|++|++++|.+. .    ++..+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            456778899999999999888 3    3445778999999999987543    445443       68899999999999


Q ss_pred             cccc-----cchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC---------CCCCeEecccc--c-hHHH-
Q 042184           66 LVRE-----LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL---------TNLQKLCIIEA--D-SEVL-  127 (261)
Q Consensus        66 ~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~--~-~~~~-  127 (261)
                      .+..     ++..+..+++|++|++++|.++..      ....++..+..+         ++|+.|++++|  . ...+ 
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            9884     667788999999999999987531      122344444444         89999999999  2 3444 


Q ss_pred             --HHHhccccccEEEeeccCCCccc---hHH-HHhCCCCCceEEEeecccc----cccccccccCCccccceEEEec-cC
Q 042184          128 --KELMKLRQLRKLSIRPQNGNGKD---LCV-LIANLENLENLIVLMKSKE----EVLDLQSLSNPPQYLQRLYFKG-DM  196 (261)
Q Consensus       128 --~~l~~~~~L~~L~l~~~~~~~~~---~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~~L~~L~l~~-~l  196 (261)
                        ..+..+++|+.|+++++......   +.. .+..+++|++|++++|.+.    ...+ ..+..++ +|++|++++ .+
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~-~L~~L~L~~n~i  256 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWP-NLRELGLNDCLL  256 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCT-TCCEEECTTCCC
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCC-CcCEEECCCCCC
Confidence              56778899999999883322212   333 7778999999999999875    2233 3467788 999999998 77


Q ss_pred             cC-----CCcccc--CCCcccEEEeccCCCCC----ChhHHh-ccCCcccceEec-cccccee
Q 042184          197 KK-----LPDWIF--KPKNVIRLGLDLSGLTE----DPIRVL-HALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       197 ~~-----l~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~-n~~~~~~  246 (261)
                      +.     ++..+.  .+++|++|++++|.+++    .++..+ .++++|++|+++ |.+++..
T Consensus       257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            63     456663  48999999999999987    366666 568999999999 9887554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=3.3e-22  Score=170.33  Aligned_cols=188  Identities=17%  Similarity=0.161  Sum_probs=145.1

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      .+..+++|++|++++|.++.++  ++.+++|++|++++|.++.++  ++.+++|++|++++|.++.++  +..+++|++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            5788999999999999999775  788999999999999998775  788999999999999988775  7889999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      ++++|++++           +  .++.+++|+.|++++|  ....  .+..+++|+.|+++++ . ...++  +..+++|
T Consensus       133 ~l~~N~l~~-----------l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~-l~~l~--l~~l~~L  193 (457)
T 3bz5_A          133 NCARNTLTE-----------I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-K-ITELD--VSQNKLL  193 (457)
T ss_dssp             ECTTSCCSC-----------C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-C-CCCCC--CTTCTTC
T ss_pred             ECCCCccce-----------e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-c-cceec--cccCCCC
Confidence            999998763           2  2667788888888877  2222  3566778888888772 2 22233  6677778


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP  223 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  223 (261)
                      ++|++++|.+.+. +   +..++ +|++|++++ .++.+|  +..+++|+.|++++|.+++..
T Consensus       194 ~~L~l~~N~l~~~-~---l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          194 NRLNCDTNNITKL-D---LNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CEEECCSSCCSCC-C---CTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             CEEECcCCcCCee-c---cccCC-CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            8888888776643 2   55667 788888877 777766  666777888888877777643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=8.2e-23  Score=178.12  Aligned_cols=142  Identities=18%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             CccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc--ccchHhhcc
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR--ELPVEIRNL   77 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~--~~~~~~~~l   77 (261)
                      |..|.++++|++|++++|.+..+ +..++.+++|++|++++|.++.++. .++.+++|++|++++|.+.  ..+..+..+
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            45567777777777777777733 3566777777777777777774443 3677777777777777766  334456666


Q ss_pred             ccccceeccceecccC--------------chhhhhhh-hhcCCcccCCCCCCeEecccc-chHHHHH-HhccccccEEE
Q 042184           78 KKLRYLMVYQYYFTSG--------------SSIAEEAA-AKLHPGFGSLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLS  140 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~--------------~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~  140 (261)
                      ++|++|++++|.+.+.              +.+..+.+ ...+..+..+++|+.|+++.+ ....+.. +..+++|+.|+
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE  202 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence            6666666666652211              01111111 135677888999999999998 4445544 45689999999


Q ss_pred             eec
Q 042184          141 IRP  143 (261)
Q Consensus       141 l~~  143 (261)
                      +++
T Consensus       203 L~~  205 (549)
T 2z81_A          203 LRD  205 (549)
T ss_dssp             EES
T ss_pred             ccC
Confidence            987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=171.07  Aligned_cols=217  Identities=20%  Similarity=0.247  Sum_probs=180.4

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccce
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQY   88 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~   88 (261)
                      .+.++..+.++..+|..+.  ++++.|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            5678888888888887665  78999999999999544 67899999999999999999554 67889999999999999


Q ss_pred             ecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184           89 YFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI  165 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  165 (261)
                      +++           .++ ..+..+++|+.|++++|  .......+..+++|+.|++.+++......+..+..+++|++|+
T Consensus       123 ~l~-----------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          123 RLT-----------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             CCS-----------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             cCC-----------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            775           344 46889999999999999  3333446788999999999874444433445688899999999


Q ss_pred             EeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184          166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                      +++|.+....   .+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+++..+..+.++++|+.|+++ |.+
T Consensus       192 L~~n~l~~~~---~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          192 LAMCNLREIP---NLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CTTSCCSSCC---CCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCCcCcccc---ccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            9999887442   477888 999999999 88855 5678889999999999999998777888999999999999 887


Q ss_pred             cc
Q 042184          243 NY  244 (261)
Q Consensus       243 ~~  244 (261)
                      +.
T Consensus       268 ~~  269 (440)
T 3zyj_A          268 TL  269 (440)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=3.6e-22  Score=178.31  Aligned_cols=237  Identities=21%  Similarity=0.233  Sum_probs=136.1

Q ss_pred             cccCccccceeecCCCCCCCC-cccccCcccccEEEecCC----------------------------Cce-ecccccCC
Q 042184            4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNK----------------------------KVK-IIPKSIGN   53 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~----------------------------~i~-~~~~~l~~   53 (261)
                      .|..+++|++|++++|.+..+ +..+..+++|++|++++|                            .++ ..|..+..
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            455566666666666666633 234455555555555443                            333 22344555


Q ss_pred             CCCCcEEeCCCCccc-ccc-hHhhccccccceeccceecccCc-------------hhhhh---hhhhcCCcccCCCCCC
Q 042184           54 LLGLESLDLKNTLVR-ELP-VEIRNLKKLRYLMVYQYYFTSGS-------------SIAEE---AAAKLHPGFGSLTNLQ  115 (261)
Q Consensus        54 l~~L~~L~l~~~~~~-~~~-~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~---~~~~l~~~~~~~~~L~  115 (261)
                      +++|++|++++|.+. .++ ..+..+++|++|++++|++++..             .+...   .....|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            666666666666655 333 44555666666666666543210             00000   1123455566666777


Q ss_pred             eEecccc--chHHHHHHhccccccEEEeeccCCCccc--------hHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184          116 KLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKD--------LCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ  185 (261)
Q Consensus       116 ~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  185 (261)
                      .|++++|  ....+..+..+++|+.|+++++ .....        ....+..+++|++|++++|.+.. .+...+..++ 
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~-  560 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF-  560 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHHccccc-
Confidence            7777666  3223334566677777777661 11111        01125566777777777776653 3324466677 


Q ss_pred             ccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhc-cCCcccceEec-cccc
Q 042184          186 YLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLH-ALPNLLQLRLA-GTYN  243 (261)
Q Consensus       186 ~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~-n~~~  243 (261)
                      +|+.|++++ .++.+|.. +..+++|+.|++++|.+++..+..+. .+++|+.++++ |++.
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            777777777 77766654 35677788888888877776666665 67788888888 7664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=6.6e-23  Score=187.04  Aligned_cols=230  Identities=21%  Similarity=0.222  Sum_probs=169.2

Q ss_pred             CccccCccccceeecCCCCCC-CC-cccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchH--hh
Q 042184            2 NTSIANFKLMKVLDLEDAPVV-YL-PEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVE--IR   75 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~-~~-~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~   75 (261)
                      +..|.++++|++|++++|... .+ |..+.++++|++|++++|.++ ..|..+.++++|++|++++|.+. ..+..  +.
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            567899999999999999554 55 678999999999999999998 55888999999999999999988 35554  88


Q ss_pred             ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhcc--cc----------------
Q 042184           76 NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKL--RQ----------------  135 (261)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~--~~----------------  135 (261)
                      .+++|++|++++|.+++         ...+..++.+++|+.|++++|  ....+..+..+  ++                
T Consensus       121 ~L~~L~~L~Ls~N~l~~---------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRS---------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             SCSSCCEEEEESCCCCC---------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred             ccCCCCEEECCCCcccc---------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence            99999999999998763         123457899999999999998  22222222222  34                


Q ss_pred             --------------ccEEEeeccCCCccchHHH------------------------------------HhC--CCCCce
Q 042184          136 --------------LRKLSIRPQNGNGKDLCVL------------------------------------IAN--LENLEN  163 (261)
Q Consensus       136 --------------L~~L~l~~~~~~~~~~~~~------------------------------------l~~--~~~L~~  163 (261)
                                    |+.|+++++ ......+..                                    +..  .++|++
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~  270 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH  270 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred             cchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence                          445555441 111111111                                    111  256777


Q ss_pred             EEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n  240 (261)
                      |++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|++|++++|.+++..+..+..+++|+.|+++ |
T Consensus       271 L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  348 (844)
T 3j0a_A          271 LDLSHGFVFSLNS-RVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN  348 (844)
T ss_dssp             EECTTCCCCEECS-CCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred             EECCCCcccccCh-hhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence            7777776655433 4567777 888888888 77744 4567778889999999988887767778888899999998 7


Q ss_pred             ccc
Q 042184          241 TYN  243 (261)
Q Consensus       241 ~~~  243 (261)
                      .++
T Consensus       349 ~i~  351 (844)
T 3j0a_A          349 HIA  351 (844)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=2.3e-22  Score=171.37  Aligned_cols=218  Identities=18%  Similarity=0.213  Sum_probs=179.8

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccce
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~   88 (261)
                      .+.++.++.++..+|..+.  ++++.|++++|.++. .+..+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            4678888888888887654  789999999999994 467789999999999999999955 467889999999999999


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                      .++.          .-+..+..+++|+.|++++| ... ....+..+++|+.|++++++......+..+..+++|++|++
T Consensus       134 ~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  203 (452)
T 3zyi_A          134 WLTV----------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL  203 (452)
T ss_dssp             CCSB----------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCc----------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence            7753          22345888999999999999 333 34468889999999998744444333456888999999999


Q ss_pred             eecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ++|.+.+.   ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.+++..+..+..+++|+.|+++ |.++
T Consensus       204 ~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          204 GMCNIKDM---PNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             TTSCCSSC---CCCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccccc---ccccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            99988754   2477788 999999999 88855 5678889999999999999998777888999999999999 8876


Q ss_pred             c
Q 042184          244 Y  244 (261)
Q Consensus       244 ~  244 (261)
                      .
T Consensus       280 ~  280 (452)
T 3zyi_A          280 S  280 (452)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2e-22  Score=161.95  Aligned_cols=202  Identities=16%  Similarity=0.107  Sum_probs=170.5

Q ss_pred             ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      ..+.++++++++++++++++.+|..+.  ++++.|++++|.++.+ +..+..+++|++|++++|.++.++.. ..+++|+
T Consensus         4 C~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             SEEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             ccccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            457889999999999999998887664  7899999999999844 56789999999999999999976554 7899999


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE  159 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  159 (261)
                      +|++++|.++           .+|..+..+++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..++
T Consensus        81 ~L~Ls~N~l~-----------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           81 TLDLSHNQLQ-----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTP  148 (290)
T ss_dssp             EEECCSSCCS-----------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCT
T ss_pred             EEECCCCcCC-----------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhccccc
Confidence            9999999664           67888899999999999999 333 345688899999999988 333333445577899


Q ss_pred             CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      +|++|++++|.+....+ ..+..++ +|++|++++ .++.+|..+...++|+.+++++|.+..
T Consensus       149 ~L~~L~L~~N~l~~l~~-~~~~~l~-~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPA-GLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCEEECTTSCCSCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCEEECCCCcCCccCH-HHhcCcC-CCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            99999999998875444 5577888 999999999 999999999999999999999998875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=6.2e-23  Score=166.65  Aligned_cols=200  Identities=18%  Similarity=0.123  Sum_probs=161.1

Q ss_pred             CccccceeecCCCCCC-CCcccc--cCcccccEEEecCCCceecccccCCC-----CCCcEEeCCCCcccccc-hHhhcc
Q 042184            7 NFKLMKVLDLEDAPVV-YLPEGV--GSLLNLHYLSLRNKKVKIIPKSIGNL-----LGLESLDLKNTLVRELP-VEIRNL   77 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~-~~~~~~--~~l~~L~~L~l~~~~i~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~l   77 (261)
                      ++++|++|++++|.+. .+|..+  ..+++|++|++++|.++.+|..++.+     ++|++|++++|.+..++ ..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6899999999999998 778766  88999999999999999668777666     99999999999999655 788899


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcc--cCCCCCCeEecccc-ch---HHH-HHHhccccccEEEeeccCCCccc
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF--GSLTNLQKLCIIEA-DS---EVL-KELMKLRQLRKLSIRPQNGNGKD  150 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~-~~---~~~-~~l~~~~~L~~L~l~~~~~~~~~  150 (261)
                      ++|++|++++|++++        ...++..+  ..+++|+.|++++| ..   ..+ ..+..+++|+.|++++ +.....
T Consensus       173 ~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~  243 (312)
T 1wwl_A          173 PALSTLDLSDNPELG--------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-NSLRDA  243 (312)
T ss_dssp             SSCCEEECCSCTTCH--------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSS
T ss_pred             CCCCEEECCCCCcCc--------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcc
Confidence            999999999998753        22233334  78899999999999 22   333 3456789999999998 333322


Q ss_pred             hH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          151 LC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       151 ~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      .+ ..+..+++|++|++++|.+. ..+. .+.  + +|++|++++ .++.+|. +..+++|++|++++|.+++
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~-~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--A-KLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--S-EEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             cchhhhhhcCCCCEEECCCCccC-hhhh-hcc--C-CceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            22 34556789999999999887 3342 232  5 999999999 9998877 8889999999999999886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=8e-22  Score=176.05  Aligned_cols=205  Identities=16%  Similarity=0.167  Sum_probs=137.8

Q ss_pred             cccCccccceeecCCCCCC-CCc-ccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc---ccchHhhcc
Q 042184            4 SIANFKLMKVLDLEDAPVV-YLP-EGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR---ELPVEIRNL   77 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~-~~~-~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l   77 (261)
                      +|..+++|++|++++|.+. .++ ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.   ..|..+..+
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            3444444555555554444 233 34444455555555555444 22233445555555555555543   345667778


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH---------HHHhccccccEEEeeccCCC
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL---------KELMKLRQLRKLSIRPQNGN  147 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~---------~~l~~~~~L~~L~l~~~~~~  147 (261)
                      ++|++|++++|++++          ..+..+..+++|+.|++++| ...+.         ..+..+++|+.|++++ +..
T Consensus       480 ~~L~~L~Ls~N~l~~----------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l  548 (680)
T 1ziw_A          480 RNLTILDLSNNNIAN----------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGF  548 (680)
T ss_dssp             TTCCEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCC
T ss_pred             CCCCEEECCCCCCCc----------CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCC
Confidence            888888888886653          23345889999999999999 32221         1367889999999998 333


Q ss_pred             ccchH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-cc-CCCcccEEEeccCCCCCC
Q 042184          148 GKDLC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IF-KPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       148 ~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~-~~~~L~~L~l~~~~~~~~  222 (261)
                      . .++ ..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.++.. +. .+++|+.|++++|.+...
T Consensus       549 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          549 D-EIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             C-CCCHHHcccccCcceeECCCCCCCcCCH-hHhCCCC-CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            3 444 458899999999999998875444 5577888 999999999 99977764 33 588999999999988753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=1.5e-23  Score=170.69  Aligned_cols=214  Identities=14%  Similarity=0.094  Sum_probs=175.2

Q ss_pred             ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY   82 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~   82 (261)
                      ..|.++++|++|++++|.+...+. +..+++|++|++++|.++.++.    .++|++|++++|.+..++..  .+++|++
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~  124 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKN  124 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEE
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCE
Confidence            468899999999999999986554 8899999999999999987653    38999999999999865432  4788999


Q ss_pred             eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHH-hccccccEEEeeccCCCccchHHHHhCCC
Q 042184           83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKEL-MKLRQLRKLSIRPQNGNGKDLCVLIANLE  159 (261)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  159 (261)
                      |++++|.+++          ..+..+..+++|+.|++++|  ....+..+ ..+++|+.|+++++ . ...++ ....++
T Consensus       125 L~l~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~-l~~~~-~~~~l~  191 (317)
T 3o53_A          125 IYLANNKITM----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F-IYDVK-GQVVFA  191 (317)
T ss_dssp             EECCSSCCCS----------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-C-CCEEE-CCCCCT
T ss_pred             EECCCCCCCC----------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-c-Ccccc-cccccc
Confidence            9999998764          23456778899999999999  33334444 47899999999882 2 22232 233588


Q ss_pred             CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCC-CChhHHhccCCcccceE
Q 042184          160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT-EDPIRVLHALPNLLQLR  237 (261)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~  237 (261)
                      +|++|++++|.+.+..+  .+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+. +..+..+..+++|+.++
T Consensus       192 ~L~~L~Ls~N~l~~l~~--~~~~l~-~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          192 KLKTLDLSSNKLAFMGP--EFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             TCCEEECCSSCCCEECG--GGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             cCCEEECCCCcCCcchh--hhcccC-cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            99999999998875533  377788 999999999 99999998889999999999999998 66778888999999999


Q ss_pred             ec
Q 042184          238 LA  239 (261)
Q Consensus       238 l~  239 (261)
                      +.
T Consensus       269 l~  270 (317)
T 3o53_A          269 KQ  270 (317)
T ss_dssp             HH
T ss_pred             CC
Confidence            88

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.4e-22  Score=166.13  Aligned_cols=224  Identities=13%  Similarity=0.082  Sum_probs=156.1

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCce-e-cccccCCCCCCcEEeCCCCccc-ccchHhhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK-I-IPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~-~-~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l   85 (261)
                      +++++++++++.+...+..+..+++|+.|++++|.++ . ++..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            6788888888877755555667888888888888876 3 6777788888888888888877 56667778888888888


Q ss_pred             cce-ecccCchhhhhhhhhcCCcccCCCCCCeEecccc---ch-HHHHHHhccc-cccEEEeeccC--CCccchHHHHhC
Q 042184           86 YQY-YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DS-EVLKELMKLR-QLRKLSIRPQN--GNGKDLCVLIAN  157 (261)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~-~~~~~l~~~~-~L~~L~l~~~~--~~~~~~~~~l~~  157 (261)
                      ++| .+++         ..++..+..+++|+.|++++|   .. .++..+..++ +|++|+++++.  .....++..+..
T Consensus       150 ~~~~~l~~---------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          150 SGCSGFSE---------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             TTCBSCCH---------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCCCH---------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            888 4532         235555677888888888877   22 2566778888 88888887732  222556677778


Q ss_pred             CCCCceEEEeecc-cccccccccccCCccccceEEEec-c-Cc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcc
Q 042184          158 LENLENLIVLMKS-KEEVLDLQSLSNPPQYLQRLYFKG-D-MK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNL  233 (261)
Q Consensus       158 ~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~L~~L~l~~-~-l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  233 (261)
                      +++|++|++++|. +.+... ..+..++ +|++|++++ . +. .....+..+++|+.|++++| +++.....+.  .++
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~-~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l  295 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCF-QEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EAL  295 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGG-GGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHS
T ss_pred             CCCCCEEeCCCCCcCCHHHH-HHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhC
Confidence            8888888888887 333322 4566777 888888877 3 22 11124566888888888888 6654444433  235


Q ss_pred             cceEec-cccccee
Q 042184          234 LQLRLA-GTYNYEL  246 (261)
Q Consensus       234 ~~L~l~-n~~~~~~  246 (261)
                      +.|+++ |.+++..
T Consensus       296 ~~L~l~~n~l~~~~  309 (336)
T 2ast_B          296 PHLQINCSHFTTIA  309 (336)
T ss_dssp             TTSEESCCCSCCTT
T ss_pred             cceEEecccCcccc
Confidence            556677 7776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.4e-22  Score=161.30  Aligned_cols=193  Identities=22%  Similarity=0.282  Sum_probs=145.4

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +.++++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            345788888888888888766 47778888999998888887766 788888999999888888765 577888889999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN  163 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  163 (261)
                      +++|.+++           ++ .+..+++|+.|++++| ....+. +..+++|+.|+++++ .. ..++. +..+++|++
T Consensus       114 l~~n~l~~-----------~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l-~~~~~-l~~l~~L~~  177 (308)
T 1h6u_A          114 LTSTQITD-----------VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QV-SDLTP-LANLSKLTT  177 (308)
T ss_dssp             CTTSCCCC-----------CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CC-CCCGG-GTTCTTCCE
T ss_pred             CCCCCCCC-----------ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cC-CCChh-hcCCCCCCE
Confidence            88887652           22 3778888888888888 222222 777888888888772 22 22333 777888888


Q ss_pred             EEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      |++++|.+.+..+   +..++ +|++|++++ .++.++. +..+++|+.|++++|.+++
T Consensus       178 L~l~~n~l~~~~~---l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          178 LKADDNKISDISP---LASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECCSSCCCCCGG---GGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             EECCCCccCcChh---hcCCC-CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            8888887765433   56677 888888888 7777664 6778888888888887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=7.4e-23  Score=175.75  Aligned_cols=215  Identities=13%  Similarity=0.093  Sum_probs=177.3

Q ss_pred             CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      |..|..+++|++|++++|.+...++ +..+++|++|++++|.++.+|.    .++|++|++++|.+..++.  ..+++|+
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~  123 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKK  123 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE--CCCSSCE
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc--cccCCCC
Confidence            4678999999999999999985554 8899999999999999987664    3899999999999986543  2468999


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-ccccccEEEeeccCCCccchHHHHhCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-KLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                      .|++++|.+++          ..+..++.+++|+.|++++|  .+..+..+. .+++|+.|+++++ ... ..+ ....+
T Consensus       124 ~L~L~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~-~~~-~~~~l  190 (487)
T 3oja_A          124 NIYLANNKITM----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIY-DVK-GQVVF  190 (487)
T ss_dssp             EEECCSSCCCS----------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCC-EEE-CCCCC
T ss_pred             EEECCCCCCCC----------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccc-ccc-ccccC
Confidence            99999998864          34567788999999999999  444555554 7899999999982 222 222 23468


Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCC-CChhHHhccCCcccce
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT-EDPIRVLHALPNLLQL  236 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L  236 (261)
                      ++|++|++++|.+.+..+  .+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+. +.++..+..+++|+.+
T Consensus       191 ~~L~~L~Ls~N~l~~~~~--~~~~l~-~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGP--EFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             TTCCEEECCSSCCCEECG--GGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             CCCCEEECCCCCCCCCCH--hHcCCC-CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            899999999999886544  377888 999999999 99999998989999999999999998 5566778889998888


Q ss_pred             Eec
Q 042184          237 RLA  239 (261)
Q Consensus       237 ~l~  239 (261)
                      ++.
T Consensus       268 ~~~  270 (487)
T 3oja_A          268 AKQ  270 (487)
T ss_dssp             HHH
T ss_pred             ecc
Confidence            874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.9e-21  Score=155.10  Aligned_cols=219  Identities=19%  Similarity=0.217  Sum_probs=174.8

Q ss_pred             eeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceec
Q 042184           13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYF   90 (261)
Q Consensus        13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~   90 (261)
                      +++..+.++..+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            45566667777887654  679999999999996654 7889999999999999998655 4688899999999999977


Q ss_pred             ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184           91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM  168 (261)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  168 (261)
                      ++          ..+..+..+++|+.|++++| ... ....+..+++|+.|+++++......+|..+..+++|++|++++
T Consensus        89 ~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           89 QS----------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             CE----------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             Cc----------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence            53          23467889999999999998 222 2234788999999999983322224678899999999999999


Q ss_pred             cccccccccccccCCccccc----eEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184          169 KSKEEVLDLQSLSNPPQYLQ----RLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       169 n~~~~~~~~~~~~~~~~~L~----~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                      |.+.+..+ ..+..++ +++    .|++++ .++.++.......+|++|++++|.+++.....+..+++|+.|+++ |++
T Consensus       159 N~l~~~~~-~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          159 NKIQSIYC-TDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SCCCEECG-GGGHHHH-TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCCcCCH-HHhhhhh-hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            98876543 3455555 566    889998 888887776667799999999999998777778899999999999 988


Q ss_pred             cce
Q 042184          243 NYE  245 (261)
Q Consensus       243 ~~~  245 (261)
                      +.+
T Consensus       237 ~c~  239 (276)
T 2z62_A          237 DCS  239 (276)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.9e-21  Score=170.07  Aligned_cols=110  Identities=28%  Similarity=0.313  Sum_probs=60.6

Q ss_pred             cccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKL   80 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L   80 (261)
                      +|.++++|++|++++|.+..+ +..++++++|++|++++|.++.++ ..++.+++|++|++++|.+..++. .++.+++|
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            455556666666666655533 244555566666666666555333 445556666666666665554432 35555666


Q ss_pred             cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ++|++++|.+++         ..+|..++.+++|+.|++++|
T Consensus       127 ~~L~L~~n~l~~---------~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          127 KELNVAHNLIQS---------FKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             CEEECCSSCCCC---------CCCCGGGGGCTTCCEEECTTS
T ss_pred             cEEecCCCccce---------ecChhhhcccCCCCEEeCcCC
Confidence            666666654431         134555666666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.9e-21  Score=157.54  Aligned_cols=210  Identities=19%  Similarity=0.224  Sum_probs=169.4

Q ss_pred             eeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceeccc
Q 042184           13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS   92 (261)
Q Consensus        13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   92 (261)
                      .+.+..+.+.... ....+++|+.|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+++
T Consensus        23 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            3344555554322 2456899999999999999876 57889999999999999998776 8999999999999998753


Q ss_pred             CchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccc
Q 042184           93 GSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSK  171 (261)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  171 (261)
                                 + +.+..+++|+.|++++| ....+ .+..+++|+.|+++++ .. ..++. +..+++|++|++++|.+
T Consensus       100 -----------~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l-~~~~~-l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          100 -----------V-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QI-TNISP-LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             -----------C-GGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSS-CC-CCCGG-GGGCTTCCEEECCSSCC
T ss_pred             -----------c-hhhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCC-cc-CcCcc-ccCCCCccEEEccCCcC
Confidence                       2 36888999999999999 33333 3889999999999882 22 23332 88899999999999988


Q ss_pred             ccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccceeeE
Q 042184          172 EEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYELFH  248 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~~~  248 (261)
                      .+..+   +..++ +|+.|++++ .++.++. +..+++|++|++++|.+++..  .+..+++|+.|+++ |.++.....
T Consensus       164 ~~~~~---l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          164 SDLTP---LANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             CCCGG---GTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             CCChh---hcCCC-CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCee
Confidence            75433   77888 999999999 8988776 778999999999999999765  37899999999999 988764443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=4.7e-21  Score=152.40  Aligned_cols=197  Identities=19%  Similarity=0.216  Sum_probs=149.3

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceeccc
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQ   87 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~   87 (261)
                      ..++++++++.++.+|..+.  ++++.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            47889999999998887654  689999999999986664 688999999999999999877654 47799999999999


Q ss_pred             eecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI  165 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  165 (261)
                      |.+++          .-+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|+
T Consensus        95 n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           95 NKLQA----------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             SCCCC----------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCc----------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeE
Confidence            97653          12345678899999999888  333344567788888888887 233333333467788888888


Q ss_pred             EeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCC
Q 042184          166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~  221 (261)
                      +++|.+.+..+ ..+..++ +|++|++++ .++.++.. +..+++|+.|++++|.+..
T Consensus       164 L~~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          164 LYNNQLKRVPE-GAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCSSCCSCCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ecCCcCcEeCh-hHhccCC-CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            88887765433 4466777 888888888 78776654 5567888888888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.2e-22  Score=162.70  Aligned_cols=223  Identities=17%  Similarity=0.176  Sum_probs=176.3

Q ss_pred             ccceeecCCCCCCCCcccccCc--ccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-c-cchHhhccccccceec
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSL--LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-E-LPVEIRNLKKLRYLMV   85 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~-~~~~~~~l~~L~~L~l   85 (261)
                      .++.++++++.+.  +..+..+  ++++.+++++|.+...+..+..+++|++|++++|.+. . ++..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4788999988776  3445555  8899999999998855555778999999999999987 3 7788899999999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---ch-HHHHHHhccccccEEEeecc-CCCccchHHHHhCCC-
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DS-EVLKELMKLRQLRKLSIRPQ-NGNGKDLCVLIANLE-  159 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~-~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~-  159 (261)
                      ++|.+++          ..+..++.+++|+.|++++|   .. .++..+..+++|+.|+++++ ......++..+..++ 
T Consensus       126 ~~~~l~~----------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          126 EGLRLSD----------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             TTCBCCH----------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             cCcccCH----------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            9998753          45566778999999999998   33 46777999999999999984 333334678889999 


Q ss_pred             CCceEEEeecc--cc-cccccccccCCccccceEEEec-c-Cc-CCCccccCCCcccEEEeccC-CCCCChhHHhccCCc
Q 042184          160 NLENLIVLMKS--KE-EVLDLQSLSNPPQYLQRLYFKG-D-MK-KLPDWIFKPKNVIRLGLDLS-GLTEDPIRVLHALPN  232 (261)
Q Consensus       160 ~L~~L~l~~n~--~~-~~~~~~~~~~~~~~L~~L~l~~-~-l~-~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  232 (261)
                      +|++|++++|.  +. +..+ ..+..++ +|++|++++ . ++ ..+..+..+++|++|++++| .+++.....+.++++
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~-~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLS-TLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHH-HHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             CCCEEEeCCCcccCCHHHHH-HHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            99999999994  33 1222 2356788 999999999 6 65 55667888999999999999 455555557888999


Q ss_pred             ccceEeccccccee
Q 042184          233 LLQLRLAGTYNYEL  246 (261)
Q Consensus       233 L~~L~l~n~~~~~~  246 (261)
                      |+.|+++++++.+.
T Consensus       274 L~~L~l~~~i~~~~  287 (336)
T 2ast_B          274 LKTLQVFGIVPDGT  287 (336)
T ss_dssp             CCEEECTTSSCTTC
T ss_pred             CCEEeccCccCHHH
Confidence            99999993365443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=4.7e-22  Score=158.39  Aligned_cols=214  Identities=18%  Similarity=0.170  Sum_probs=134.3

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   89 (261)
                      ++..+++..+.+... .....+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus        20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC
T ss_pred             HHHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc
Confidence            344445555544422 12345566777777776666543 3556677777777777666543 46666777777777765


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEe
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL  167 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  167 (261)
                      +++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|+++
T Consensus        97 l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           97 LQS----------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             CCC----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCc----------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECC
Confidence            542          12233566667777777766  222333456677777777766 23333333446677888888888


Q ss_pred             ecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184          168 MKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       168 ~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      +|.+.+..+ ..+..++ +|++|++++ .++.++.. +..+++|+.|++++|.+.+       .+++|+.++++ |.+++
T Consensus       166 ~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          166 YNQLQSLPE-GVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             SSCCCCCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred             CCCcCccCH-HHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence            887765433 4466777 888888888 77765543 5678888888888887664       35677777777 76665


Q ss_pred             ee
Q 042184          245 EL  246 (261)
Q Consensus       245 ~~  246 (261)
                      ..
T Consensus       237 ~i  238 (272)
T 3rfs_A          237 VV  238 (272)
T ss_dssp             GB
T ss_pred             cc
Confidence            44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=157.22  Aligned_cols=219  Identities=19%  Similarity=0.164  Sum_probs=164.7

Q ss_pred             ccceeecCCCCCC--CCcc--cccCcccccEEEecCCCce-eccccc--CCCCCCcEEeCCCCcccc-cc----hHhhcc
Q 042184           10 LMKVLDLEDAPVV--YLPE--GVGSLLNLHYLSLRNKKVK-IIPKSI--GNLLGLESLDLKNTLVRE-LP----VEIRNL   77 (261)
Q Consensus        10 ~L~~L~l~~~~l~--~~~~--~~~~l~~L~~L~l~~~~i~-~~~~~l--~~l~~L~~L~l~~~~~~~-~~----~~~~~l   77 (261)
                      .++.+.+.++.+.  .+..  ....+++|++|++++|.++ ..|..+  ..+++|++|++++|.+.. .+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3566777776665  2221  1223467999999999988 666666  889999999999999883 22    334578


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH--HHHH--HhccccccEEEeeccCCCccch
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE--VLKE--LMKLRQLRKLSIRPQNGNGKDL  151 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~--~~~~--l~~~~~L~~L~l~~~~~~~~~~  151 (261)
                      ++|++|++++|.+++          ..+..++.+++|+.|++++|  ...  .+..  +..+++|++|+++++ .. ..+
T Consensus       145 ~~L~~L~Ls~n~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l-~~l  212 (310)
T 4glp_A          145 PGLKVLSIAQAHSPA----------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GM-ETP  212 (310)
T ss_dssp             SCCCEEEEECCSSCC----------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CC-CCH
T ss_pred             cCCCEEEeeCCCcch----------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CC-Cch
Confidence            999999999997753          34567889999999999999  221  2222  367899999999983 22 223


Q ss_pred             HH----HHhCCCCCceEEEeecccccccc--cccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChh
Q 042184          152 CV----LIANLENLENLIVLMKSKEEVLD--LQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPI  224 (261)
Q Consensus       152 ~~----~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~  224 (261)
                      +.    .+..+++|++|++++|.+.+..+  +..+..++ +|++|++++ .++.+|..+.  ++|+.|++++|.+++.. 
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-  288 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-  288 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC-cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-
Confidence            32    35788999999999999887644  22233336 999999999 9999988764  89999999999999742 


Q ss_pred             HHhccCCcccceEec-ccccce
Q 042184          225 RVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       225 ~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                       ....+++|+.|+++ |.++++
T Consensus       289 -~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          289 -QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             -CTTSCCCCSCEECSSTTTSCC
T ss_pred             -hhhhCCCccEEECcCCCCCCC
Confidence             25789999999999 998754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.6e-21  Score=151.98  Aligned_cols=196  Identities=22%  Similarity=0.280  Sum_probs=161.3

Q ss_pred             ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcCC-ccc
Q 042184           32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP-GFG  109 (261)
Q Consensus        32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~  109 (261)
                      ...+.++++++.++.+|..+.  +++++|++++|.+..++. .+..+++|++|++++|.++           .++. .+.
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~i~~~~~~   82 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-----------TLPAGIFK   82 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-----------CCCTTTTS
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-----------eeChhhhc
Confidence            357899999999998887654  789999999999996654 6889999999999999765           3444 457


Q ss_pred             CCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcccc
Q 042184          110 SLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYL  187 (261)
Q Consensus       110 ~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  187 (261)
                      .+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L  159 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLT-SL  159 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TC
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCc-cc
Confidence            8999999999999  333344578899999999988 33444445567899999999999998875543 4577888 99


Q ss_pred             ceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          188 QRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       188 ~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      ++|++++ .++.++.. +..+++|++|++++|.+++.....+..+++|+.|+++ |++.
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            9999999 89977764 6779999999999999998777778899999999999 8874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.4e-21  Score=155.72  Aligned_cols=207  Identities=18%  Similarity=0.184  Sum_probs=164.9

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-Hhhccccccce
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYL   83 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L   83 (261)
                      +..+++|++|+++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            456788999999999988665 4778999999999999988764 67899999999999999996654 46889999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      ++++|++++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|
T Consensus       115 ~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          115 VLVENQLQS----------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             ECTTSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred             ECCCCcCCc----------cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccC
Confidence            999997753          23345788999999999999  333344568899999999998 33344444557889999


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCc
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPN  232 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  232 (261)
                      ++|++++|.+.+..+ ..+..++ +|+.|++++ .+.      +.++.|+.+++..|.+++.++..++.++.
T Consensus       184 ~~L~L~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPD-GVFDRLT-SLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CEEECCSSCCSCCCT-TTTTTCT-TCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CEEECCCCcCCccCH-HHHhCCc-CCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            999999998886555 5577888 999999988 554      44778999999999988877776665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=1.6e-20  Score=164.89  Aligned_cols=77  Identities=22%  Similarity=0.265  Sum_probs=60.2

Q ss_pred             CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceE
Q 042184          159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR  237 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  237 (261)
                      ++|++|++++|.+.+. +    ..++ +|+.|++++ .++.+|.   .+++|+.|++++|.++ .++..+.++++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~~l-p----~~l~-~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLTSL-P----VLPS-ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCSCC-C----CCCT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCCccCcC-C----CCCC-cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            5677777777766542 2    2345 888899988 8888876   5688999999999988 5567789999999999


Q ss_pred             ec-ccccce
Q 042184          238 LA-GTYNYE  245 (261)
Q Consensus       238 l~-n~~~~~  245 (261)
                      ++ |.+++.
T Consensus       291 L~~N~l~~~  299 (622)
T 3g06_A          291 LEGNPLSER  299 (622)
T ss_dssp             CCSCCCCHH
T ss_pred             ecCCCCCCc
Confidence            99 888654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=1.2e-20  Score=151.61  Aligned_cols=199  Identities=17%  Similarity=0.124  Sum_probs=164.8

Q ss_pred             cccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccceecccCchhhhhhhhhcC
Q 042184           27 GVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH  105 (261)
Q Consensus        27 ~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  105 (261)
                      .+..+++++.++++++.++.+|..+.  +++++|++++|.+..+ +..+..+++|++|++++|.++           .++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~   71 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------KLQ   71 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------EEE
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-----------ccc
Confidence            35678899999999999999887664  7899999999999854 567899999999999999775           333


Q ss_pred             CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184          106 PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP  184 (261)
Q Consensus       106 ~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  184 (261)
                      .. ..+++|+.|++++| ...++..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus        72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~  148 (290)
T 1p9a_G           72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTP  148 (290)
T ss_dssp             CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred             CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhccccc
Confidence            33 78899999999999 555666678899999999998 33333334678899999999999998875544 5577888


Q ss_pred             cccceEEEec-cCcCCCccc-cCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          185 QYLQRLYFKG-DMKKLPDWI-FKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       185 ~~L~~L~l~~-~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                       +|+.|++++ .++.+|... ..+++|+.|++++|.++. ++..+..+++|+.++++ |++.
T Consensus       149 -~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          149 -KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             -CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence             999999999 999888754 569999999999999984 55667778899999999 8874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.7e-21  Score=162.79  Aligned_cols=218  Identities=15%  Similarity=0.118  Sum_probs=167.8

Q ss_pred             CCCCcccccCcccccEEEecCCCce-e----cccccCCCCCCcEEeCCCCccc----ccchHh-------hcccccccee
Q 042184           21 VVYLPEGVGSLLNLHYLSLRNKKVK-I----IPKSIGNLLGLESLDLKNTLVR----ELPVEI-------RNLKKLRYLM   84 (261)
Q Consensus        21 l~~~~~~~~~l~~L~~L~l~~~~i~-~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~-------~~l~~L~~L~   84 (261)
                      +..++..+..+++|+.|++++|.++ .    ++..+..+++|++|++++|.+.    .+|..+       ..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            3356677788899999999999987 3    4445778999999999997544    344444       6889999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhcc---------ccccEEEeeccCCCcc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKL---------RQLRKLSIRPQNGNGK  149 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~---------~~L~~L~l~~~~~~~~  149 (261)
                      +++|.++..      ....++..+..+++|+.|++++|  ..    .++..+..+         ++|++|+++++.....
T Consensus       101 Ls~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A          101 LSDNAFGPT------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             CCSCCCCTT------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CCCCcCCHH------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            999988752      34457778889999999999999  22    233445555         8999999998433324


Q ss_pred             chH---HHHhCCCCCceEEEeeccccccc---ccc-cccCCccccceEEEec-cC-----cCCCccccCCCcccEEEecc
Q 042184          150 DLC---VLIANLENLENLIVLMKSKEEVL---DLQ-SLSNPPQYLQRLYFKG-DM-----KKLPDWIFKPKNVIRLGLDL  216 (261)
Q Consensus       150 ~~~---~~l~~~~~L~~L~l~~n~~~~~~---~~~-~~~~~~~~L~~L~l~~-~l-----~~l~~~~~~~~~L~~L~l~~  216 (261)
                      .++   ..+..+++|++|++++|.+....   -.. .+..++ +|++|++++ .+     ..++..+..+++|++|++++
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            444   57788999999999999876221   012 467788 999999999 87     46777788899999999999


Q ss_pred             CCCCCC----hhHHhcc--CCcccceEec-ccccce
Q 042184          217 SGLTED----PIRVLHA--LPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       217 ~~~~~~----~~~~~~~--~~~L~~L~l~-n~~~~~  245 (261)
                      |.+++.    ++..+..  +++|+.|+++ |.++..
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            999875    3445533  9999999999 988764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=5.5e-22  Score=169.30  Aligned_cols=209  Identities=17%  Similarity=0.167  Sum_probs=99.3

Q ss_pred             ccCccccceeecCCCCCCC-Ccccc-cCcc----cccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc-ccch
Q 042184            5 IANFKLMKVLDLEDAPVVY-LPEGV-GSLL----NLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR-ELPV   72 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~-~~~~~-~~l~----~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~-~~~~   72 (261)
                      +..+++|++|++++|.+.. .+..+ ..++    +|++|++++|.++     .++..+..+++|++|++++|.+. ..+.
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            4445566666666655541 11111 1222    4666666666554     23445555666666666666554 1111


Q ss_pred             Hhh-----ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-----ccccccEEE
Q 042184           73 EIR-----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-----KLRQLRKLS  140 (261)
Q Consensus        73 ~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-----~~~~L~~L~  140 (261)
                      .+.     ..++|++|++++|.++..      ....++..+..+++|+.|++++|  ....+..+.     ..++|+.|+
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~  205 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAA------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK  205 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGG------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHH------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence            111     133466666666555431      22234445555666677776666  222222222     234666666


Q ss_pred             eeccCCCcc---chHHHHhCCCCCceEEEeecccccccc----cccccCCccccceEEEec-cCcC-----CCccccCCC
Q 042184          141 IRPQNGNGK---DLCVLIANLENLENLIVLMKSKEEVLD----LQSLSNPPQYLQRLYFKG-DMKK-----LPDWIFKPK  207 (261)
Q Consensus       141 l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~~L~~L~l~~-~l~~-----l~~~~~~~~  207 (261)
                      ++++.....   .++..+..+++|++|++++|.+.+...    ......++ +|++|++++ .++.     ++..+..++
T Consensus       206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~  284 (461)
T 1z7x_W          206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKE  284 (461)
T ss_dssp             CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred             ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence            665211111   245555566666666666665432110    00111244 566666655 4442     344444455


Q ss_pred             cccEEEeccCCCC
Q 042184          208 NVIRLGLDLSGLT  220 (261)
Q Consensus       208 ~L~~L~l~~~~~~  220 (261)
                      +|++|++++|.++
T Consensus       285 ~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          285 SLKELSLAGNELG  297 (461)
T ss_dssp             TCCEEECTTCCCH
T ss_pred             CcceEECCCCCCc
Confidence            5555555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=1.6e-21  Score=161.58  Aligned_cols=235  Identities=11%  Similarity=0.097  Sum_probs=162.7

Q ss_pred             cccCccccceeecCCCCCCCCc-----ccccCcc-cccEEEecCCCce-ecccccCCC-----CCCcEEeCCCCccccc-
Q 042184            4 SIANFKLMKVLDLEDAPVVYLP-----EGVGSLL-NLHYLSLRNKKVK-IIPKSIGNL-----LGLESLDLKNTLVREL-   70 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~-----~~~~~l~-~L~~L~l~~~~i~-~~~~~l~~l-----~~L~~L~l~~~~~~~~-   70 (261)
                      .+...++|++|++++|.+...+     ..+..++ +|++|++++|.++ ..+..+..+     ++|++|++++|.++.. 
T Consensus        17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            3445566999999999988544     5667787 8999999999988 334444443     8999999999998833 


Q ss_pred             chH----hhcc-ccccceeccceecccCchhhhhhhhhcCCcccC-CCCCCeEecccc--c----hHHHHHHhccc-ccc
Q 042184           71 PVE----IRNL-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS-LTNLQKLCIIEA--D----SEVLKELMKLR-QLR  137 (261)
Q Consensus        71 ~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~--~----~~~~~~l~~~~-~L~  137 (261)
                      +..    +..+ ++|++|++++|.+++.      ....+...+.. .++|+.|++++|  .    ..++..+...+ +|+
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSK------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGS------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcH------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence            332    4455 7899999999987652      23333344555 368999999998  2    24556667666 999


Q ss_pred             EEEeeccCCCccc----hHHHHhCC-CCCceEEEeeccccccccc---ccccCCccccceEEEec-cCcCCC-----ccc
Q 042184          138 KLSIRPQNGNGKD----LCVLIANL-ENLENLIVLMKSKEEVLDL---QSLSNPPQYLQRLYFKG-DMKKLP-----DWI  203 (261)
Q Consensus       138 ~L~l~~~~~~~~~----~~~~l~~~-~~L~~L~l~~n~~~~~~~~---~~~~~~~~~L~~L~l~~-~l~~l~-----~~~  203 (261)
                      .|+++++ .....    +...+..+ ++|++|++++|.+.+....   ..+...+++|++|++++ .++..+     ..+
T Consensus       171 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          171 SLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             EeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence            9999882 33222    23455566 5999999999987652110   12333223899999998 777443     334


Q ss_pred             cCCCcccEEEeccCCCCCChh-------HHhccCCcccceEec-ccccce
Q 042184          204 FKPKNVIRLGLDLSGLTEDPI-------RVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      ..+++|+.|++++|.+.+...       ..+..+++|+.|+++ |.+...
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            668899999999997443222       234567889999999 887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=9.5e-21  Score=153.64  Aligned_cols=201  Identities=19%  Similarity=0.124  Sum_probs=156.6

Q ss_pred             CccccceeecCCCCCC-CCcccc--cCcccccEEEecCCCcee-cc----cccCCCCCCcEEeCCCCccccc-chHhhcc
Q 042184            7 NFKLMKVLDLEDAPVV-YLPEGV--GSLLNLHYLSLRNKKVKI-IP----KSIGNLLGLESLDLKNTLVREL-PVEIRNL   77 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~-~~~~~~--~~l~~L~~L~l~~~~i~~-~~----~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l   77 (261)
                      .+++|++|++++|.+. ..|..+  ..+++|++|++++|.++. .+    ..+..+++|++|++++|.+..+ +..+..+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            3467999999999998 666766  889999999999999883 33    2345789999999999999855 4678899


Q ss_pred             ccccceeccceecccCchhhhhhhhhc--CCcccCCCCCCeEecccc-c---hHHHH-HHhccccccEEEeeccCCCccc
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKL--HPGFGSLTNLQKLCIIEA-D---SEVLK-ELMKLRQLRKLSIRPQNGNGKD  150 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~-~---~~~~~-~l~~~~~L~~L~l~~~~~~~~~  150 (261)
                      ++|++|++++|++.+        ...+  +..+..+++|+.|++++| .   ...+. .+..+++|++|++++ +.....
T Consensus       169 ~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~  239 (310)
T 4glp_A          169 PALTSLDLSDNPGLG--------ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRAT  239 (310)
T ss_dssp             TTCCEEECCSCTTCH--------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCC
T ss_pred             CCCCEEECCCCCCcc--------chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCcc
Confidence            999999999998653        2122  333468899999999999 3   22333 357889999999998 334434


Q ss_pred             hHHHHhCC---CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184          151 LCVLIANL---ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       151 ~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      .|..+..+   ++|++|++++|.+... +. .+  .+ +|++|++++ .++.+|. +..+++|+.|++++|.+++.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~-~~--~~-~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLEQV-PK-GL--PA-KLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCCSC-CS-CC--CS-CCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred             chhhHHhccCcCcCCEEECCCCCCCch-hh-hh--cC-CCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence            45556665   6999999999988743 42 22  25 999999999 9998866 67889999999999998763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=4.3e-20  Score=163.25  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc--ccchHhhcccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR--ELPVEIRNLKK   79 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~   79 (261)
                      +|.++++|++|++++|.++.+| ..|.++++|++|++++|.++.++. .++.+++|++|++++|.+.  ..|..+..+++
T Consensus        95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~  174 (635)
T 4g8a_A           95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  174 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence            3445555555555555555333 234455555555555555554433 2455566666666666554  34455566666


Q ss_pred             ccceeccceecc
Q 042184           80 LRYLMVYQYYFT   91 (261)
Q Consensus        80 L~~L~l~~~~~~   91 (261)
                      |++|++++|+++
T Consensus       175 L~~L~L~~N~l~  186 (635)
T 4g8a_A          175 LEHLDLSSNKIQ  186 (635)
T ss_dssp             CCEEECCSSCCC
T ss_pred             hhhhcccCcccc
Confidence            777766666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=2.4e-20  Score=145.64  Aligned_cols=206  Identities=15%  Similarity=0.151  Sum_probs=148.6

Q ss_pred             eecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCc-ccccch-Hhhccccccceeccc-ee
Q 042184           14 LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTL-VRELPV-EIRNLKKLRYLMVYQ-YY   89 (261)
Q Consensus        14 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~   89 (261)
                      +++....++.+|. +.  +++++|++++|.++.+|. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.
T Consensus        16 ~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~   92 (239)
T 2xwt_C           16 FRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN   92 (239)
T ss_dssp             TEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred             ceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence            3333334667776 43  478889998888886665 57788889999998886 776654 577888899999987 75


Q ss_pred             cccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhcccccc---EEEeeccCCCccchHHHHhCCCCCc-e
Q 042184           90 FTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLR---KLSIRPQNGNGKDLCVLIANLENLE-N  163 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~L~-~  163 (261)
                      ++           .++ ..+..+++|+.|++++| ...++. +..+++|+   .|+++++.......+..+..+++|+ +
T Consensus        93 l~-----------~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~  160 (239)
T 2xwt_C           93 LT-----------YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT  160 (239)
T ss_dssp             CC-----------EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred             ee-----------EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence            54           344 46778888899988888 333444 66777777   8888872133333344578889999 9


Q ss_pred             EEEeecccccccccccccCCccccceEEEec-c-CcCCCc-cccCC-CcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-D-MKKLPD-WIFKP-KNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~-l~~l~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +++++|.+. ..+...+.. + +|++|++++ . ++.++. .+..+ ++|+.|++++|.++.....   .+++|+.|+++
T Consensus       161 L~l~~n~l~-~i~~~~~~~-~-~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~  234 (239)
T 2xwt_C          161 LKLYNNGFT-SVQGYAFNG-T-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR  234 (239)
T ss_dssp             EECCSCCCC-EECTTTTTT-C-EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred             EEcCCCCCc-ccCHhhcCC-C-CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence            999999876 334344444 6 899999988 4 887754 46677 8999999999998864332   67888888887


Q ss_pred             c
Q 042184          240 G  240 (261)
Q Consensus       240 n  240 (261)
                      +
T Consensus       235 ~  235 (239)
T 2xwt_C          235 N  235 (239)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=4.8e-21  Score=163.46  Aligned_cols=233  Identities=18%  Similarity=0.174  Sum_probs=154.5

Q ss_pred             ccCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCcee-ccccc-CCCC----CCcEEeCCCCccc-----
Q 042184            5 IANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKI-IPKSI-GNLL----GLESLDLKNTLVR-----   68 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l-~~l~----~L~~L~l~~~~~~-----   68 (261)
                      +..+++|++|++++|.+.     .++..+..+++|++|++++|.++. .+..+ ..+.    +|++|++++|.+.     
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            556778888888888777     345566677888888888887762 22222 2333    6888888888776     


Q ss_pred             ccchHhhccccccceeccceecccCchhhhhhhhhcCCc-ccCCCCCCeEecccc--ch----HHHHHHhccccccEEEe
Q 042184           69 ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSI  141 (261)
Q Consensus        69 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l  141 (261)
                      .++..+..+++|++|++++|.++..      ....+... ....++|+.|++++|  ..    .++..+..+++|++|++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  177 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDA------GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  177 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHH------HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHccCCceeEEECCCCcCchH------HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence            3456677788888888888876431      12222222 223457888888887  22    34566777788888888


Q ss_pred             eccCCCccchHHHHh-----CCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCcC-----CCcc-ccCC
Q 042184          142 RPQNGNGKDLCVLIA-----NLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMKK-----LPDW-IFKP  206 (261)
Q Consensus       142 ~~~~~~~~~~~~~l~-----~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~~-----l~~~-~~~~  206 (261)
                      +++ ......+..+.     ..++|++|++++|.+.....   ...+..++ +|++|++++ .++.     +... ...+
T Consensus       178 ~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~  255 (461)
T 1z7x_W          178 SNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPS  255 (461)
T ss_dssp             CSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCC
Confidence            872 23222222222     35588889988887664310   12355677 899999988 7662     2222 3357


Q ss_pred             CcccEEEeccCCCCCC----hhHHhccCCcccceEec-ccccce
Q 042184          207 KNVIRLGLDLSGLTED----PIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       207 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      ++|++|++++|.+++.    ++..+..+++|++|+++ |.++++
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            8999999999998875    45566778999999999 877544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=4.2e-20  Score=144.31  Aligned_cols=192  Identities=13%  Similarity=0.140  Sum_probs=153.7

Q ss_pred             cccceeecCCCCCCCCcc-cccCcccccEEEecCCC-ceeccc-ccCCCCCCcEEeCCC-Ccccccc-hHhhccccccce
Q 042184            9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKK-VKIIPK-SIGNLLGLESLDLKN-TLVRELP-VEIRNLKKLRYL   83 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-~l~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L   83 (261)
                      +++++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.++.++ ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            379999999999996664 78899999999999997 886665 688999999999998 8998765 467889999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCC---eEecccc--chH-HHHHHhcccccc-EEEeeccCCCccchHHHHh
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQ---KLCIIEA--DSE-VLKELMKLRQLR-KLSIRPQNGNGKDLCVLIA  156 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~--~~~-~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~  156 (261)
                      ++++|.++           .+|. +..+++|+   .|++++|  ... .+..+..+++|+ .|++++ +.. ..++....
T Consensus       111 ~l~~n~l~-----------~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l-~~i~~~~~  176 (239)
T 2xwt_C          111 GIFNTGLK-----------MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGF-TSVQGYAF  176 (239)
T ss_dssp             EEEEECCC-----------SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCC-CEECTTTT
T ss_pred             eCCCCCCc-----------cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCC-cccCHhhc
Confidence            99999775           3555 78888888   9999987  222 334578899999 999987 222 34544433


Q ss_pred             CCCCCceEEEeecc-cccccccccccCC-ccccceEEEec-cCcCCCccccCCCcccEEEeccCC
Q 042184          157 NLENLENLIVLMKS-KEEVLDLQSLSNP-PQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSG  218 (261)
Q Consensus       157 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~  218 (261)
                      ..++|++|++++|. +.+. +...+..+ + +|+.|++++ .++.+|..  .+++|+.|+++++.
T Consensus       177 ~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~-~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTVI-DKDAFGGVYS-GPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCEEEEEECTTCTTCCEE-CTTTTTTCSB-CCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCCCEEEcCCCCCcccC-CHHHhhcccc-CCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            44789999999995 6643 33567788 8 999999999 99988875  68899999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=1.6e-20  Score=159.92  Aligned_cols=137  Identities=18%  Similarity=0.131  Sum_probs=81.6

Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA  156 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  156 (261)
                      ++|++|++++|+++           .+| .++.+++|+.|++++| ...++.   ..++|+.|+++++ . ...++ .+.
T Consensus       131 ~~L~~L~L~~n~l~-----------~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n-~-l~~l~-~~~  192 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-----------KLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNN-Q-LEELP-ELQ  192 (454)
T ss_dssp             TTCCEEECCSSCCS-----------SCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C-CSSCC-CCT
T ss_pred             CCCCEEECcCCCCC-----------CCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCC-c-CCcCc-ccc
Confidence            34555555555432           344 4666777777777766 222221   1246777777662 2 22233 466


Q ss_pred             CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184          157 NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ  235 (261)
Q Consensus       157 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  235 (261)
                      .+++|++|++++|.+.+...     ..+ +|++|++++ .++.+|. ++.+++|++|++++|.+++.. .   .+++|+.
T Consensus       193 ~l~~L~~L~l~~N~l~~l~~-----~~~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~  261 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKKLPD-----LPL-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP-D---LPPSLEA  261 (454)
T ss_dssp             TCTTCCEEECCSSCCSSCCC-----CCT-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC-S---CCTTCCE
T ss_pred             CCCCCCEEECCCCcCCcCCC-----CcC-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc-c---cccccCE
Confidence            77777777777776654211     123 788888887 7777774 677888888888888777522 1   2356666


Q ss_pred             eEec-cccc
Q 042184          236 LRLA-GTYN  243 (261)
Q Consensus       236 L~l~-n~~~  243 (261)
                      |+++ |.++
T Consensus       262 L~l~~N~l~  270 (454)
T 1jl5_A          262 LNVRDNYLT  270 (454)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCccc
Confidence            6666 5554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.80  E-value=1.4e-19  Score=154.04  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (261)
                      ++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+   .+|++|++++|.+..+| .+..+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            45666666666666655 3666666666666666665554432   35566666655555544 3455555555555555


Q ss_pred             ecccC---------chhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           89 YFTSG---------SSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        89 ~~~~~---------~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      .+++.         +.+..+.+..+| .++.+++|+.|++++|
T Consensus       206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence            44321         111111222344 3566666666666666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=1.7e-20  Score=155.37  Aligned_cols=222  Identities=16%  Similarity=0.157  Sum_probs=163.0

Q ss_pred             eeecCCCCCC-CCcccccCcccccEEEecCCCceecc-----cccCCCC-CCcEEeCCCCcccc-cchHhhcc-----cc
Q 042184           13 VLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIP-----KSIGNLL-GLESLDLKNTLVRE-LPVEIRNL-----KK   79 (261)
Q Consensus        13 ~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~-----~~l~~l~-~L~~L~l~~~~~~~-~~~~~~~l-----~~   79 (261)
                      +.+++.+.++ .+|..+...++|++|++++|.++..+     ..+..++ +|++|++++|.+.. .+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4678888888 45555556677999999999998554     5677888 99999999999884 34455553     89


Q ss_pred             ccceeccceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc--chHHH----HHHhc-cccccEEEeeccCCCc---
Q 042184           80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA--DSEVL----KELMK-LRQLRKLSIRPQNGNG---  148 (261)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~--~~~~~----~~l~~-~~~L~~L~l~~~~~~~---  148 (261)
                      |++|++++|.+++.      ....+...+..+ ++|+.|++++|  ....+    ..+.. .++|++|+++++ ...   
T Consensus        82 L~~L~Ls~n~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~  154 (362)
T 3goz_A           82 VTSLNLSGNFLSYK------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS  154 (362)
T ss_dssp             CCEEECCSSCGGGS------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC
T ss_pred             ccEEECcCCcCChH------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH
Confidence            99999999988642      223333445566 79999999999  32223    33444 369999999982 222   


Q ss_pred             -cchHHHHhCCC-CCceEEEeeccccccccc---ccccCCccccceEEEec-cCcC-----CCccccC-CCcccEEEecc
Q 042184          149 -KDLCVLIANLE-NLENLIVLMKSKEEVLDL---QSLSNPPQYLQRLYFKG-DMKK-----LPDWIFK-PKNVIRLGLDL  216 (261)
Q Consensus       149 -~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~---~~~~~~~~~L~~L~l~~-~l~~-----l~~~~~~-~~~L~~L~l~~  216 (261)
                       ..++..+...+ +|++|++++|.+.+..+.   ..+...+++|++|++++ .++.     ++..+.. .++|++|++++
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence             25566677776 999999999988654331   12344423899999999 8875     6665655 46999999999


Q ss_pred             CCCCCChhH----HhccCCcccceEec-cc
Q 042184          217 SGLTEDPIR----VLHALPNLLQLRLA-GT  241 (261)
Q Consensus       217 ~~~~~~~~~----~~~~~~~L~~L~l~-n~  241 (261)
                      |.+++....    .+..+++|+.|+++ |.
T Consensus       235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             SCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            999986553    34678999999999 87

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=1.2e-19  Score=159.35  Aligned_cols=236  Identities=14%  Similarity=0.085  Sum_probs=153.8

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc--ccchHhhccccc
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR--ELPVEIRNLKKL   80 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L   80 (261)
                      +..+++|+.++++++....++..+..+++|+.|++++|.++  .++..+..+++|++|+++ +.+.  .++.....+++|
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence            44555555555555433455666667778888888887765  333345677888888887 3333  344444667888


Q ss_pred             cceeccc-----------eecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhc-cccccEEEeec---
Q 042184           81 RYLMVYQ-----------YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMK-LRQLRKLSIRP---  143 (261)
Q Consensus        81 ~~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~-~~~L~~L~l~~---  143 (261)
                      ++|++++           +.++.         ..+......+++|+.|+++.+  ....+..+.. +++|+.|++.+   
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~---------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQ---------RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCH---------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred             CEEEeecCccccccccccCccCH---------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence            8888883           33331         122333445788888888665  5555555554 88889888863   


Q ss_pred             cCCCcc-----chHHHHhCCCCCceEEEeecc--cccccccccccCCccccceEEEec-cCc--CCCccccCCCcccEEE
Q 042184          144 QNGNGK-----DLCVLIANLENLENLIVLMKS--KEEVLDLQSLSNPPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLG  213 (261)
Q Consensus       144 ~~~~~~-----~~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~  213 (261)
                      ++...+     .++..+..+++|++|++++|.  +.+.........++ +|++|++++ .++  .++..+..+++|+.|+
T Consensus       416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT-TCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc-cceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence            222222     355567778899999997643  22221211123467 899999998 776  4555667889999999


Q ss_pred             eccCCCCCChh-HHhccCCcccceEec-ccccceeeEEec
Q 042184          214 LDLSGLTEDPI-RVLHALPNLLQLRLA-GTYNYELFHFEA  251 (261)
Q Consensus       214 l~~~~~~~~~~-~~~~~~~~L~~L~l~-n~~~~~~~~~~~  251 (261)
                      +++|.+++... .....+++|++|+++ |.+++.......
T Consensus       495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~  534 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ  534 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred             ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence            99999876533 445679999999999 888876544333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=2.7e-19  Score=157.12  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEE
Q 042184          134 RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRL  212 (261)
Q Consensus       134 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L  212 (261)
                      ++|+.|+++++  ....+|   ..+++|++|++++|.+... +.    .++ +|+.|++++ .++.+|..+..+++|+.|
T Consensus       221 ~~L~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N~L~~l-p~----~~~-~L~~L~Ls~N~L~~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGN--RLTSLP---VLPSELKELMVSGNRLTSL-PM----LPS-GLLSLSVYRNQLTRLPESLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSS--CCSCCC---CCCTTCCEEECCSSCCSCC-CC----CCT-TCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred             CCCCEEEccCC--ccCcCC---CCCCcCcEEECCCCCCCcC-Cc----ccc-cCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence            56777777762  222344   4668999999999987643 31    456 999999999 999999999999999999


Q ss_pred             EeccCCCCCChhHHhccCC
Q 042184          213 GLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~  231 (261)
                      ++++|.+++..+..+..++
T Consensus       290 ~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          290 NLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ECCSCCCCHHHHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHHhcc
Confidence            9999999987777665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2e-18  Score=138.68  Aligned_cols=165  Identities=22%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      ++++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence            44555555555555554432 4455555555555555554443 4555555555555555554432 4555555555555


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI  165 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  165 (261)
                      +|.+++           + +.+..+++|+.|++++| .... ..+..+++|+.|++++ +... ..+. +..+++|++|+
T Consensus       121 ~n~i~~-----------~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~-~~~~-l~~l~~L~~L~  184 (291)
T 1h6t_A          121 HNGISD-----------I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQIS-DIVP-LAGLTKLQNLY  184 (291)
T ss_dssp             TSCCCC-----------C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCC-CCGG-GTTCTTCCEEE
T ss_pred             CCcCCC-----------C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccc-cchh-hcCCCccCEEE
Confidence            554431           1 23444555555555554 1111 2344444444444444 1111 1111 44444444444


Q ss_pred             EeecccccccccccccCCccccceEEEec
Q 042184          166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG  194 (261)
Q Consensus       166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  194 (261)
                      +++|.+.+.   ..+..++ +|+.|++++
T Consensus       185 L~~N~i~~l---~~l~~l~-~L~~L~l~~  209 (291)
T 1h6t_A          185 LSKNHISDL---RALAGLK-NLDVLELFS  209 (291)
T ss_dssp             CCSSCCCBC---GGGTTCT-TCSEEEEEE
T ss_pred             CCCCcCCCC---hhhccCC-CCCEEECcC
Confidence            444444322   1133444 444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1e-18  Score=137.39  Aligned_cols=176  Identities=20%  Similarity=0.186  Sum_probs=137.8

Q ss_pred             ccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccceecccCchhhhhhhhhcCCcccC
Q 042184           32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS  110 (261)
Q Consensus        32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~  110 (261)
                      ...+.++++++.++.+|..+.  +++++|++++|.+..+ +..+..+++|++|++++|.+++          ..+..+..
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----------LSAGVFDD   81 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----------CCTTTTTT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc----------cCHhHhcc
Confidence            567889999999999987764  7899999999999855 4468899999999999998764          34456788


Q ss_pred             CCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184          111 LTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ  188 (261)
Q Consensus       111 ~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  188 (261)
                      +++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|+
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~  158 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLT-NLQ  158 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCC
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCc-CCC
Confidence            999999999998  333345567888999999987 33333333446788899999999988775544 4577788 899


Q ss_pred             eEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184          189 RLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       189 ~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      +|++++ .++.++. .+..+++|+.|++++|.+...
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999988 8886665 566788899999999988764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.2e-19  Score=143.33  Aligned_cols=189  Identities=21%  Similarity=0.270  Sum_probs=148.9

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceec
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYF   90 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   90 (261)
                      +..+.+....+..+. ....+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus        26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence            344455665555332 23578999999999999987754 7889999999999999997766 88999999999999977


Q ss_pred             ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeec
Q 042184           91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMK  169 (261)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  169 (261)
                      ++           + +.+..+++|+.|++++| .... ..+..+++|+.|+++++ .. ..+ ..+..+++|++|++++|
T Consensus       103 ~~-----------~-~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l-~~~-~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          103 KD-----------L-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KI-TDI-TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CC-----------G-GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSS-CC-CCC-GGGGGCTTCSEEECCSS
T ss_pred             CC-----------C-hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCC-cC-Ccc-hhhccCCCCCEEEccCC
Confidence            52           2 34888999999999999 2222 45788899999999882 22 223 56788999999999999


Q ss_pred             ccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184          170 SKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP  223 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  223 (261)
                      .+.+..+   +..++ +|+.|++++ .++.++. +..+++|+.|++++|.+++..
T Consensus       167 ~l~~~~~---l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          167 QISDIVP---LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCCCCGG---GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             ccccchh---hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            8876544   67788 999999999 8888865 788999999999999877643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=2.9e-18  Score=134.82  Aligned_cols=175  Identities=19%  Similarity=0.193  Sum_probs=140.9

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceecc
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVY   86 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~   86 (261)
                      ...++++++++.+..+|..+.  ++++.|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            457889999999998887665  68999999999998544 46889999999999999999554 457889999999999


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL  164 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  164 (261)
                      +|.+++          ..+..+..+++|+.|++++| ...+ +..+..+++|+.|++++ +......+..+..+++|++|
T Consensus        92 ~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           92 NNQLAS----------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcccc----------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence            998753          23356788999999999999 3333 34468899999999998 33333334468889999999


Q ss_pred             EEeecccccccccccccCCccccceEEEec-cCcC
Q 042184          165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK  198 (261)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~  198 (261)
                      ++++|.+.+..+ ..+..++ +|+.|++++ .+..
T Consensus       161 ~L~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~~~c  193 (251)
T 3m19_A          161 SLSTNQLQSVPH-GAFDRLG-KLQTITLFGNQFDC  193 (251)
T ss_dssp             ECCSSCCSCCCT-TTTTTCT-TCCEEECCSCCBCT
T ss_pred             ECCCCcCCccCH-HHHhCCC-CCCEEEeeCCceeC
Confidence            999998876544 5578888 999999998 7763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=9.4e-19  Score=152.06  Aligned_cols=186  Identities=18%  Similarity=0.141  Sum_probs=148.5

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   89 (261)
                      ++++|++++|.++.+|..+.  ++|+.|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            89999999999998887653  88999999999999888   457999999999999998877 544  89999999997


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM  168 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  168 (261)
                      ++           .+|.   .+++|+.|++++| ...++.   .+++|+.|+++++ . ...+|. +.  ++|++|++++
T Consensus       132 l~-----------~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~-L~~lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          132 LT-----------MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-Q-LTFLPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CS-----------CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C-CSCCCC-CC--TTCCEEECCS
T ss_pred             CC-----------CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-C-CCCcch-hh--CCCCEEECcC
Confidence            75           3555   6789999999999 333443   5789999999882 2 233555 44  8999999999


Q ss_pred             cccccccccccccCCcccc-------ceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          169 KSKEEVLDLQSLSNPPQYL-------QRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       169 n~~~~~~~~~~~~~~~~~L-------~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                      |.+... +.  +.   .+|       +.|++++ .++.+|..+..+++|+.|++++|.+++..+..+..++
T Consensus       190 N~L~~l-p~--~~---~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          190 NLLESL-PA--VP---VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCSSC-CC--CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCCch-hh--HH---HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            987733 31  22   156       9999999 9999999888899999999999999988777766543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=4e-19  Score=155.81  Aligned_cols=171  Identities=21%  Similarity=0.290  Sum_probs=90.4

Q ss_pred             cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184           29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF  108 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  108 (261)
                      ..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+++           + +.+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-----------l-~~l  105 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-----------L-SSL  105 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------C-TTS
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-----------C-hhh
Confidence            34555555555555555443 24555556666666555554443 5555556666666554431           1 245


Q ss_pred             cCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcccc
Q 042184          109 GSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYL  187 (261)
Q Consensus       109 ~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  187 (261)
                      ..+++|+.|++++| ...+ ..+..+++|+.|+++++ ... .+ ..+..+++|+.|++++|.+.+..+   +..++ +|
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L  177 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KIT-DI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLT-KL  177 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSS-CCC-CC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCT-TC
T ss_pred             ccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCC-ccC-Cc-hhhcccCCCCEEECcCCcCCCchh---hccCC-CC
Confidence            55555666666555 1111 23555556666666551 111 12 345556666666666665554333   44555 66


Q ss_pred             ceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184          188 QRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       188 ~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      +.|+|++ .++.++ .+..+++|+.|++++|.+++.
T Consensus       178 ~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          178 QNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred             CEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence            6666666 555553 355566666666666655543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=1e-18  Score=153.56  Aligned_cols=230  Identities=16%  Similarity=0.094  Sum_probs=119.1

Q ss_pred             cCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeC------------------
Q 042184            6 ANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL------------------   62 (261)
Q Consensus         6 ~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l------------------   62 (261)
                      ..+++|++|+++++.+.     .++..+..+++|+.|++++|.+..++..+..+++|++|++                  
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            45677777777777664     2233344567777777776665444433333444444443                  


Q ss_pred             ---------CCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh
Q 042184           63 ---------KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM  131 (261)
Q Consensus        63 ---------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~  131 (261)
                               +++....++..+..+++|++|++++|.++.         ..+...+..+++|+.|+++++  ....+....
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~---------~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~  339 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET---------EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ  339 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH---------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH---------HHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence                     333223445555667777777777776532         122233455566666666543  222333344


Q ss_pred             ccccccEEEeec----------cCCCcc-chHHHHhCCCCCceEEEeeccccccccc-----------------------
Q 042184          132 KLRQLRKLSIRP----------QNGNGK-DLCVLIANLENLENLIVLMKSKEEVLDL-----------------------  177 (261)
Q Consensus       132 ~~~~L~~L~l~~----------~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~-----------------------  177 (261)
                      .+++|++|++.+          ++.... .+......+++|++|+++.+.+.+....                       
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            555566665552          222221 1222233345555555544433221110                       


Q ss_pred             ----------ccccCCccccceEEEec---cCc--CCCccccCCCcccEEEeccCCCCCCh-hHHhccCCcccceEec-c
Q 042184          178 ----------QSLSNPPQYLQRLYFKG---DMK--KLPDWIFKPKNVIRLGLDLSGLTEDP-IRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       178 ----------~~~~~~~~~L~~L~l~~---~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~-n  240 (261)
                                ..+..++ +|++|+++.   .++  .+......+++|++|++++|.+++.. +..+..+++|++|+++ |
T Consensus       420 ~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             SSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             cCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence                      0122345 566666642   133  11111234677888888888877633 3455678888888888 7


Q ss_pred             cccce
Q 042184          241 TYNYE  245 (261)
Q Consensus       241 ~~~~~  245 (261)
                      .+++.
T Consensus       499 ~l~~~  503 (592)
T 3ogk_B          499 CFSER  503 (592)
T ss_dssp             CCBHH
T ss_pred             CCcHH
Confidence            76543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=3.3e-18  Score=151.16  Aligned_cols=228  Identities=18%  Similarity=0.120  Sum_probs=153.7

Q ss_pred             ccCccccceeecCCCCCCCCcc--------------------cccCcccccEEEecCCCce---ecccccCCCCCCcEEe
Q 042184            5 IANFKLMKVLDLEDAPVVYLPE--------------------GVGSLLNLHYLSLRNKKVK---IIPKSIGNLLGLESLD   61 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~--------------------~~~~l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~   61 (261)
                      +..+..++.|++.++.+..++.                    ....+++|+.++++.|.+.   ..+.....+.+|++++
T Consensus       324 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  403 (635)
T 4g8a_A          324 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD  403 (635)
T ss_dssp             GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred             cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence            3445566777777665443221                    1123455666666655543   2333344555666666


Q ss_pred             CCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEE
Q 042184           62 LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKL  139 (261)
Q Consensus        62 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L  139 (261)
                      +..+.....+..+..+++|+.++++.+....         ..-...+..+++++.++++.+  ....+..+..+++++.|
T Consensus       404 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~---------~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L  474 (635)
T 4g8a_A          404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ---------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  474 (635)
T ss_dssp             CCSCSEEEECSCCTTCTTCCEEECTTSEEES---------TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccchhhhhccccc---------cccccccccccccccccccccccccccccccccchhhhhh
Confidence            6665555444455566666666666655432         122345667778888888877  33445556778888999


Q ss_pred             EeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccC
Q 042184          140 SIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLS  217 (261)
Q Consensus       140 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~  217 (261)
                      +++++.......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|+|++ .++.++. .+..+++|+.|++++|
T Consensus       475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred             hhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence            8887322333456677888999999999998876655 5578888 999999999 8887654 4677899999999999


Q ss_pred             CCCCChhHHhccC-CcccceEec-cccc
Q 042184          218 GLTEDPIRVLHAL-PNLLQLRLA-GTYN  243 (261)
Q Consensus       218 ~~~~~~~~~~~~~-~~L~~L~l~-n~~~  243 (261)
                      .+++..+..+..+ ++|++|+++ |+++
T Consensus       553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          553 HIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9998877788877 589999999 8875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.1e-18  Score=148.32  Aligned_cols=173  Identities=21%  Similarity=0.294  Sum_probs=143.6

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      +..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|+.|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence            456889999999999999776 47889999999999999997766 889999999999999998776 688899999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN  163 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  163 (261)
                      +++|.+++           + +.+..+++|+.|++++| ...+ ..+..+++|+.|++++ +......+  +..+++|++
T Consensus       116 Ls~N~l~~-----------l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          116 LEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             CTTSCCCC-----------C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCE
T ss_pred             ecCCCCCC-----------C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCE
Confidence            99997752           2 45888999999999999 3333 6688999999999988 33333333  889999999


Q ss_pred             EEEeecccccccccccccCCccccceEEEec-cCcCCC
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLP  200 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~  200 (261)
                      |++++|.+.+.   ..+..++ +|+.|++++ .+...|
T Consensus       180 L~Ls~N~i~~l---~~l~~l~-~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          180 LYLSKNHISDL---RALAGLK-NLDVLELFSQECLNKP  213 (605)
T ss_dssp             EECCSSCCCBC---GGGTTCT-TCSEEECCSEEEECCC
T ss_pred             EECcCCCCCCC---hHHccCC-CCCEEEccCCcCcCCc
Confidence            99999988754   3477888 999999998 776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.4e-18  Score=129.48  Aligned_cols=151  Identities=21%  Similarity=0.319  Sum_probs=120.1

Q ss_pred             cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184           29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF  108 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  108 (261)
                      +.+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++          ..+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~----------~~~~~l  108 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS----------DKIPNL  108 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG----------GGSCCC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc----------ccChhh
Confidence            56788999999999888777 5788899999999998766554 67888999999999987653          456778


Q ss_pred             cCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccc
Q 042184          109 GSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQY  186 (261)
Q Consensus       109 ~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  186 (261)
                      ..+++|+.|++++|  ....+..+..+++|+.|+++++ .....++ .+..+++|++|++++|.+.+..   .+..++ +
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~-~  182 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN-GAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFP-K  182 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC-TBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCS-S
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC-CCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCC-C
Confidence            88999999999998  5557788899999999999883 2233444 6888999999999999887533   477788 9


Q ss_pred             cceEEEec-cCc
Q 042184          187 LQRLYFKG-DMK  197 (261)
Q Consensus       187 L~~L~l~~-~l~  197 (261)
                      |++|++++ .++
T Consensus       183 L~~L~l~~N~i~  194 (197)
T 4ezg_A          183 LNQLYAFSQTIG  194 (197)
T ss_dssp             CCEEEECBC---
T ss_pred             CCEEEeeCcccC
Confidence            99999988 654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.7e-17  Score=122.34  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=122.4

Q ss_pred             CCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHH
Q 042184           52 GNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKE  129 (261)
Q Consensus        52 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~  129 (261)
                      ..+++|++|++++|.+..++ .+..+++|++|++++|.++            .+..+..+++|+.|++++|  ....+..
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT------------NYNPISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS------------CCGGGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC------------cchhhhcCCCCCEEEeECCccCcccChh
Confidence            56789999999999999877 6889999999999999553            2347788999999999998  4456677


Q ss_pred             HhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCc
Q 042184          130 LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKN  208 (261)
Q Consensus       130 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~  208 (261)
                      ++.+++|+.|++++ +......+..+..+++|++|++++|...+..+  .+..++ +|++|++++ .++.++ .+..+++
T Consensus       108 l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~-~L~~L~l~~n~i~~~~-~l~~l~~  182 (197)
T 4ezg_A          108 LSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP-ELKSLNIQFDGVHDYR-GIEDFPK  182 (197)
T ss_dssp             CTTCTTCCEEECCS-SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCS-SCCEEECTTBCCCCCT-TGGGCSS
T ss_pred             hcCCCCCCEEEecC-CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCC-CCCEEECCCCCCcChH-HhccCCC
Confidence            88899999999988 34444567889999999999999997333333  477888 999999999 888877 5778999


Q ss_pred             ccEEEeccCCCCC
Q 042184          209 VIRLGLDLSGLTE  221 (261)
Q Consensus       209 L~~L~l~~~~~~~  221 (261)
                      |++|++++|.+.+
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            9999999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=6.3e-17  Score=140.62  Aligned_cols=176  Identities=16%  Similarity=0.118  Sum_probs=141.9

Q ss_pred             cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCC
Q 042184           33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT  112 (261)
Q Consensus        33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (261)
                      +++.|++++|.++.+|..+  .++|++|++++|.++.+|   ..+++|++|++++|+++           .+|. +..  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-----------~ip~-l~~--  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLS-----------TLPE-LPA--  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-----------CCCC-CCT--
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-----------Ccch-hhc--
Confidence            8999999999999888866  389999999999999888   55799999999999775           3555 444  


Q ss_pred             CCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEE
Q 042184          113 NLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLY  191 (261)
Q Consensus       113 ~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  191 (261)
                      +|+.|++++| ...++.   .+++|+.|++++ +. ...+|.   .+++|++|++++|.+.+ .+.  +.  + +|+.|+
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~-~L~~L~  186 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADN-NQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE--LP--E-SLEALD  186 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCS-SC-CSCCCC---CCTTCCEEECCSSCCSC-CCC--CC--T-TCCEEE
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCC-Cc-cCcCCC---cCCCcCEEECCCCCCCC-cch--hh--C-CCCEEE
Confidence            8999999999 333444   689999999998 22 233544   57899999999998876 342  43  5 999999


Q ss_pred             Eec-cCcCCCccccCCCcc-------cEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184          192 FKG-DMKKLPDWIFKPKNV-------IRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE  245 (261)
Q Consensus       192 l~~-~l~~l~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~  245 (261)
                      +++ .++.+|. +..  +|       +.|++++|.++. ++..+..+++|+.|+++ |.+++.
T Consensus       187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CCSSCCSSCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             CcCCCCCchhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence            999 9999988 544  77       999999999995 56667779999999999 998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.4e-17  Score=131.82  Aligned_cols=171  Identities=19%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      ++.++..++++++.+++++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            4566777788888888665 4677888888888888888776 57788888888888888887766 7888888888888


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI  165 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  165 (261)
                      +|++++           ++.. .. ++|+.|++++| .... ..+..+++|+.|+++++ . ...++ .+..+++|++|+
T Consensus        94 ~N~l~~-----------l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N-~-i~~~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           94 RNRLKN-----------LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNN-K-LKSIV-MLGFLSKLEVLD  156 (263)
T ss_dssp             SSCCSC-----------CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTS-C-CCBCG-GGGGCTTCCEEE
T ss_pred             CCccCC-----------cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCC-c-CCCCh-HHccCCCCCEEE
Confidence            887652           3332 22 78888888888 2222 34777888888888772 2 22333 577788888888


Q ss_pred             EeecccccccccccccCCccccceEEEec-cCcCCCc
Q 042184          166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD  201 (261)
Q Consensus       166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~  201 (261)
                      +++|.+.+.   ..+..++ +|+.|++++ .++..|.
T Consensus       157 L~~N~i~~~---~~l~~l~-~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          157 LHGNEITNT---GGLTRLK-KVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CTTSCCCBC---TTSTTCC-CCCEEEEEEEEEECCCE
T ss_pred             CCCCcCcch---HHhccCC-CCCEEeCCCCcccCCcc
Confidence            888877655   3466777 888888888 7665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=3.7e-17  Score=134.65  Aligned_cols=215  Identities=15%  Similarity=0.090  Sum_probs=99.9

Q ss_pred             cccceeecCCCCCCCCcc-cccCcccccEEEecCCCce-eccc-ccCCCCCCcE-EeCCCCccccc-chHhhccccccce
Q 042184            9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVK-IIPK-SIGNLLGLES-LDLKNTLVREL-PVEIRNLKKLRYL   83 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~-~~~~-~l~~l~~L~~-L~l~~~~~~~~-~~~~~~l~~L~~L   83 (261)
                      +++++|++++|.|+.+|. .|+++++|++|++++|.+. .+|. .+.+++++++ +.+..|.+..+ +..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            355666666666665543 4556666666666666553 3432 3455555543 33444555544 3344556666666


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhcc-ccccEEEeeccCCCccchHHHHhCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKL-RQLRKLSIRPQNGNGKDLCVLIANLE  159 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~  159 (261)
                      ++++|+++.          .-+..+....++..+++.++  ...++ ..+..+ ..++.|++++  +....++.......
T Consensus       110 ~l~~n~l~~----------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~--N~i~~i~~~~f~~~  177 (350)
T 4ay9_X          110 LISNTGIKH----------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--NGIQEIHNSAFNGT  177 (350)
T ss_dssp             EEEEECCSS----------CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS--SCCCEECTTSSTTE
T ss_pred             ccccccccc----------CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc--ccccCCChhhcccc
Confidence            666665432          11112223334444444332  11111 112222 2345555554  22223333333344


Q ss_pred             CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184          160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL  238 (261)
Q Consensus       160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  238 (261)
                      ++++++++++...+.++...+..++ +|++|++++ .++.+|..  .+.+|+.|...++.-...++ .+..+++|+.+++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l  253 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASL  253 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred             chhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence            5555555543322333323445555 666666665 55555542  23445555544443222222 3455666666666


Q ss_pred             c
Q 042184          239 A  239 (261)
Q Consensus       239 ~  239 (261)
                      .
T Consensus       254 ~  254 (350)
T 4ay9_X          254 T  254 (350)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=4.2e-17  Score=124.50  Aligned_cols=144  Identities=22%  Similarity=0.268  Sum_probs=90.3

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceecccee
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQYY   89 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   89 (261)
                      +.++.+++++..+|..+  .++|++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56777777777777544  3578888888888885554 367788888888888888866543 5678888888888886


Q ss_pred             cccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           90 FTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                      +++           ++ ..+..+++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus        88 l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           88 LQS-----------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCc-----------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEe
Confidence            642           33 33567777777777766 222 222244555555555554 1222222223445555555555


Q ss_pred             eec
Q 042184          167 LMK  169 (261)
Q Consensus       167 ~~n  169 (261)
                      ++|
T Consensus       156 ~~N  158 (208)
T 2o6s_A          156 HDN  158 (208)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.8e-16  Score=125.43  Aligned_cols=151  Identities=16%  Similarity=0.145  Sum_probs=125.8

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL   83 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L   83 (261)
                      .+.++++|++|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++... . ++|++|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEE
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEE
Confidence            4678899999999999999887 68889999999999999998777 899999999999999999776533 3 899999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      ++++|.+++           + +.+..+++|+.|++++| .... ..+..+++|+.|+++++ ... .. ..+..+++|+
T Consensus       112 ~L~~N~l~~-----------~-~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N-~i~-~~-~~l~~l~~L~  175 (263)
T 1xeu_A          112 FLDNNELRD-----------T-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN-EIT-NT-GGLTRLKKVN  175 (263)
T ss_dssp             ECCSSCCSB-----------S-GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTS-CCC-BC-TTSTTCCCCC
T ss_pred             EccCCccCC-----------C-hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCC-cCc-ch-HHhccCCCCC
Confidence            999998753           2 35889999999999999 3333 36888999999999982 222 22 5688899999


Q ss_pred             eEEEeecccccc
Q 042184          163 NLIVLMKSKEEV  174 (261)
Q Consensus       163 ~L~l~~n~~~~~  174 (261)
                      +|++++|.+...
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            999999987644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.5e-18  Score=151.31  Aligned_cols=186  Identities=16%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             CCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCch---hhhhhhhhcCCcccCCCCCCeEe-cccc-chHH
Q 042184           52 GNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSS---IAEEAAAKLHPGFGSLTNLQKLC-IIEA-DSEV  126 (261)
Q Consensus        52 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~L~~L~-l~~~-~~~~  126 (261)
                      ..+++|+.|++++|.++.+|..++.+++|+.|++++|......+   .........|..++.+++|+.|+ ++.+ ...+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34555666666666655566666666666666654432000000   00001112334444555555555 3332 1111


Q ss_pred             HH------HHhcc--ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc
Q 042184          127 LK------ELMKL--RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK  197 (261)
Q Consensus       127 ~~------~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~  197 (261)
                      ..      .+..+  ..|+.|++++  +....+|. ++.+++|++|++++|.+. ..| ..+..++ +|+.|++++ .++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~--n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~-~L~~L~Ls~N~l~  499 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAH--KDLTVLCH-LEQLLLVTHLDLSHNRLR-ALP-PALAALR-CLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTT--SCCSSCCC-GGGGTTCCEEECCSSCCC-CCC-GGGGGCT-TCCEEECCSSCCC
T ss_pred             hhhhhhcccccccCccCceEEEecC--CCCCCCcC-ccccccCcEeecCccccc-ccc-hhhhcCC-CCCEEECCCCCCC
Confidence            10      11111  2456666665  22223443 566666666666666655 233 2455566 666666666 666


Q ss_pred             CCCccccCCCcccEEEeccCCCCCCh-hHHhccCCcccceEec-ccccc
Q 042184          198 KLPDWIFKPKNVIRLGLDLSGLTEDP-IRVLHALPNLLQLRLA-GTYNY  244 (261)
Q Consensus       198 ~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~-n~~~~  244 (261)
                      .+| .++.+++|+.|++++|.+++.. +..+..+++|+.|+++ |.+++
T Consensus       500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            665 5666666666666666666554 5566666666666666 66543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=1.2e-16  Score=121.94  Aligned_cols=173  Identities=17%  Similarity=0.129  Sum_probs=98.9

Q ss_pred             ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcC-CcccCC
Q 042184           34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH-PGFGSL  111 (261)
Q Consensus        34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~  111 (261)
                      -+.++.+++.++.+|..+  .++|++|++++|.+..++. .+..+++|++|++++|+++           .++ ..+..+
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l   75 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-----------SLPNGVFNKL   75 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----------CCCTTTTTTC
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-----------ccChhhcCCC
Confidence            356778888888777654  4689999999999886654 4678899999999999765           333 345677


Q ss_pred             CCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccce
Q 042184          112 TNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR  189 (261)
Q Consensus       112 ~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  189 (261)
                      ++|+.|++++| .... +..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|++
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~-~L~~  152 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT-SLQY  152 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCT-TCCE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCC-CccE
Confidence            88888888776 2222 22244555555555554 12222222234445555555555554443222 2234444 5555


Q ss_pred             EEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhc
Q 042184          190 LYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLH  228 (261)
Q Consensus       190 L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  228 (261)
                      |++++ .+.      +.++.|+.|+++.|.+++.++..++
T Consensus       153 L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          153 IWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             EECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             EEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence            55544 221      2334455555555555544444333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=8.9e-18  Score=147.57  Aligned_cols=202  Identities=12%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             cCcccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc--ccchHhhccccccceeccc---------eecccCch
Q 042184           29 GSLLNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR--ELPVEIRNLKKLRYLMVYQ---------YYFTSGSS   95 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~---------~~~~~~~~   95 (261)
                      ..+++|+.|++++|.++  .++..+..+++|++|++++| +.  .++.....+++|++|+++.         +.++.   
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~---  361 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE---  361 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH---
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH---
Confidence            34566666776666655  22233456666666666665 32  2222233466666666632         22211   


Q ss_pred             hhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-ccccccEEEee-----ccCCCc-----cchHHHHhCCCCCc
Q 042184           96 IAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-KLRQLRKLSIR-----PQNGNG-----KDLCVLIANLENLE  162 (261)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-~~~~L~~L~l~-----~~~~~~-----~~~~~~l~~~~~L~  162 (261)
                            ..+......+++|+.|.+..+  .......+. .+++|+.|++.     +++...     ..++..+..+++|+
T Consensus       362 ------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~  435 (594)
T 2p1m_B          362 ------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR  435 (594)
T ss_dssp             ------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred             ------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence                  011111123455666655444  333333332 45666666665     111211     12333345556666


Q ss_pred             eEEEeecccccccccccccC-CccccceEEEec-cCc--CCCccccCCCcccEEEeccCCCCCChhH-HhccCCcccceE
Q 042184          163 NLIVLMKSKEEVLDLQSLSN-PPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLTEDPIR-VLHALPNLLQLR  237 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~-~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~  237 (261)
                      +|++++ .+.+. .+..+.. ++ +|++|++++ .++  .+......+++|+.|++++|.+++.... .+..+++|+.|+
T Consensus       436 ~L~L~~-~l~~~-~~~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          436 RLSLSG-LLTDK-VFEYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             EEECCS-SCCHH-HHHHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             EEeecC-cccHH-HHHHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            666654 22211 1112222 44 566666665 554  1211123456666666666666443332 233466666666


Q ss_pred             ec-cccc
Q 042184          238 LA-GTYN  243 (261)
Q Consensus       238 l~-n~~~  243 (261)
                      ++ |.++
T Consensus       513 l~~~~~~  519 (594)
T 2p1m_B          513 MSSCSVS  519 (594)
T ss_dssp             EESSCCB
T ss_pred             eeCCCCC
Confidence            66 5543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.65  E-value=2.5e-16  Score=121.29  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=108.1

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecc--cccCCCCCCcEEeCCCCcccccch-Hhhccccccceeccce
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP--KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQY   88 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~   88 (261)
                      ++++++++.++.+|..+.  ..++.|++++|.++.++  ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            578888888888887554  45688999999888553  346788899999999998886544 6788888999999998


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                      .+++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus        92 ~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           92 RLEN----------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             CCCC----------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred             ccCc----------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEe
Confidence            7653          22345778888888888887  333355566777777777776 3333333566677777777777


Q ss_pred             eecccccc
Q 042184          167 LMKSKEEV  174 (261)
Q Consensus       167 ~~n~~~~~  174 (261)
                      ++|.+...
T Consensus       161 ~~N~l~c~  168 (220)
T 2v70_A          161 LANPFNCN  168 (220)
T ss_dssp             CSCCEECS
T ss_pred             cCcCCcCC
Confidence            77766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=3.2e-16  Score=129.11  Aligned_cols=216  Identities=18%  Similarity=0.153  Sum_probs=152.9

Q ss_pred             cCccccceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc-ccch-Hhhccccccc
Q 042184            6 ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR-ELPV-EIRNLKKLRY   82 (261)
Q Consensus         6 ~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~   82 (261)
                      -.|.. ++++.++++++.+|..+.  +++++|++++|+|+.+|. .+.++++|++|++++|.+. .++. .+.+++++++
T Consensus         7 C~C~~-~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            7 CHCSN-RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             SEEET-TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             cEeeC-CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            34433 678888889999987663  689999999999998886 5899999999999999975 5554 4677888776


Q ss_pred             -eeccceecccCchhhhhhhhhc-CCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184           83 -LMVYQYYFTSGSSIAEEAAAKL-HPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANL  158 (261)
Q Consensus        83 -L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  158 (261)
                       +.++.|+++           .+ +..+..+++|+.|++++| .... ...+.....+..+++.+.+.........+..+
T Consensus        84 ~l~~~~N~l~-----------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~  152 (350)
T 4ay9_X           84 IRIEKANNLL-----------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL  152 (350)
T ss_dssp             EEEEEETTCC-----------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             hhcccCCccc-----------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence             445556554           44 567889999999999998 3222 22334455677777765333332223344444


Q ss_pred             -CCCceEEEeecccccccccccccCCccccceEEEec--cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCccc
Q 042184          159 -ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG--DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLL  234 (261)
Q Consensus       159 -~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~--~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  234 (261)
                       ..++.|++++|.+....+ ..+ ..+ +++++++.+  .++.+|.. +..+++|+.|++++|.++......+.++++|+
T Consensus       153 ~~~l~~L~L~~N~i~~i~~-~~f-~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          153 SFESVILWLNKNGIQEIHN-SAF-NGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             BSSCEEEECCSSCCCEECT-TSS-TTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             chhhhhhccccccccCCCh-hhc-ccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence             468899999998875433 333 345 799999975  78888864 57899999999999999875554444444444


Q ss_pred             ceEe
Q 042184          235 QLRL  238 (261)
Q Consensus       235 ~L~l  238 (261)
                      .++.
T Consensus       230 ~l~~  233 (350)
T 4ay9_X          230 ARST  233 (350)
T ss_dssp             CTTC
T ss_pred             hccC
Confidence            4443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=6e-17  Score=142.29  Aligned_cols=41  Identities=12%  Similarity=0.199  Sum_probs=29.1

Q ss_pred             CCcccEEEeccCCCCCChhHHh-ccCCcccceEec-cccccee
Q 042184          206 PKNVIRLGLDLSGLTEDPIRVL-HALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~-n~~~~~~  246 (261)
                      +++|+.|++++|.+++.....+ ..+++|++|+++ |.+++..
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence            6778888888887776555444 568888888888 7765443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.64  E-value=6.9e-16  Score=118.79  Aligned_cols=147  Identities=20%  Similarity=0.296  Sum_probs=102.5

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccccc-chHhhccccccceecccee
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~   89 (261)
                      +.++.++++++.+|..+.  ++++.|++++|.++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            567888888888887554  678889999988885554 678888999999999888854 6678888889999998886


Q ss_pred             cccCchhhhhhhhhcCCc-ccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           90 FTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                      ++           .++.. +..+++|+.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|+++++
T Consensus        92 l~-----------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           92 IT-----------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CC-----------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence            64           34443 567788888888777  333344566666666666665 2222222334555666666666


Q ss_pred             eecccc
Q 042184          167 LMKSKE  172 (261)
Q Consensus       167 ~~n~~~  172 (261)
                      ++|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=9.4e-16  Score=118.75  Aligned_cols=149  Identities=20%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccch-Hhhccccccceeccce
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQY   88 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~   88 (261)
                      -+.++.+++.+..+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            3567777777777776554  7788888888888844 5667788888888888888886654 3577888888888888


Q ss_pred             ecccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184           89 YFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV  166 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  166 (261)
                      ++++           ++ ..+..+++|+.|++++| ...++..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus        99 ~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           99 QLTV-----------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CCCC-----------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCc-----------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence            6652           33 34567778888888777 444555566667777777766 2222222234566667777777


Q ss_pred             eeccccc
Q 042184          167 LMKSKEE  173 (261)
Q Consensus       167 ~~n~~~~  173 (261)
                      ++|.+..
T Consensus       167 ~~N~~~c  173 (229)
T 3e6j_A          167 FGNPWDC  173 (229)
T ss_dssp             TTSCBCT
T ss_pred             eCCCccC
Confidence            7766543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=9.3e-16  Score=126.83  Aligned_cols=126  Identities=17%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchH-hh-ccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184           34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IR-NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL  111 (261)
Q Consensus        34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (261)
                      -+.++++++.++.+|..+.  ..+++|++++|.++.++.. +. .+++|++|++++|++++          ..+..+..+
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----------i~~~~~~~l   87 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----------ISSEAFVPV   87 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----------ECTTTTTTC
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----------cChhhccCC
Confidence            3678899988888887653  5689999999998866544 44 78899999999997653          223457778


Q ss_pred             CCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184          112 TNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       112 ~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      ++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCC
Confidence            88888888776 222 222344455555555544 2222222334444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.3e-15  Score=109.97  Aligned_cols=126  Identities=21%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             CccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc-cchHhhccccccce
Q 042184            7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE-LPVEIRNLKKLRYL   83 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L   83 (261)
                      ..+++++|++++|.+.  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4578999999999998  7888888999999999999999876 678899999999999999985 77777789999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH----HHHhccccccEEEee
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL----KELMKLRQLRKLSIR  142 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~----~~l~~~~~L~~L~l~  142 (261)
                      ++++|.+++         ...+..+..+++|+.|++++| ....+    ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKD---------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCS---------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCC---------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999998753         123367788899999999988 22222    467788888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2e-15  Score=111.16  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             CccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc-cchHhhccccccce
Q 042184            7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE-LPVEIRNLKKLRYL   83 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L   83 (261)
                      ..++|++|++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999988  7888888899999999999998866 678889999999999999885 77777779999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH----HHHhccccccEEEeec
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL----KELMKLRQLRKLSIRP  143 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~----~~l~~~~~L~~L~l~~  143 (261)
                      ++++|.+++        . ..+..+..+++|+.|++++| ....+    ..+..+++|+.|++.+
T Consensus       101 ~Ls~N~l~~--------~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLSGNKLKD--------I-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECBSSSCCS--------S-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             eccCCccCc--------c-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            999997753        1 12256777888888888877 22222    2455566666666555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=3.6e-15  Score=110.74  Aligned_cols=128  Identities=18%  Similarity=0.276  Sum_probs=102.7

Q ss_pred             ccccCccccceeecCCCCCCCCcccccCc-ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHh-hccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLPEGVGSL-LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEI-RNLKKL   80 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L   80 (261)
                      ..+.++++|++|++++|.+..++. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++|.+..++..+ ..+++|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            456788999999999999997765 4444 4999999999999977 57889999999999999999776544 889999


Q ss_pred             cceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc-chHHHH----HHhccccccEEEeec
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA-DSEVLK----ELMKLRQLRKLSIRP  143 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~~~----~l~~~~~L~~L~l~~  143 (261)
                      ++|++++|.++           .++.  .+..+++|+.|++++| ....+.    .+..+++|+.|++.+
T Consensus        91 ~~L~L~~N~i~-----------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           91 TELILTNNSLV-----------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CEEECCSCCCC-----------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             CEEECCCCcCC-----------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            99999999764           3444  6778889999999888 333333    477777888887766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=9e-17  Score=140.05  Aligned_cols=198  Identities=17%  Similarity=0.187  Sum_probs=156.0

Q ss_pred             cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCc-------------cc-ccchHhhcccccccee-ccceecccC
Q 042184           29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL-------------VR-ELPVEIRNLKKLRYLM-VYQYYFTSG   93 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~-------------~~-~~~~~~~~l~~L~~L~-l~~~~~~~~   93 (261)
                      +.+++|+.|++++|.++.+|..++.+++|+.|++++|.             .. ..|..+..+++|+.|+ ++.+.+...
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            56789999999999999999999999999999997764             22 4556778899999999 777754321


Q ss_pred             --chhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecc
Q 042184           94 --SSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKS  170 (261)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~  170 (261)
                        ..+..+.+..++.     ..|+.|++++| ...++. ++.+++|+.|++++  +....+|..++.+++|++|++++|.
T Consensus       426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          426 RSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             hhhhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCc--ccccccchhhhcCCCCCEEECCCCC
Confidence              1112222333332     25999999999 444555 89999999999998  3333778899999999999999999


Q ss_pred             cccccccccccCCccccceEEEec-cCcCC--CccccCCCcccEEEeccCCCCCChh---HHhccCCcccceEe
Q 042184          171 KEEVLDLQSLSNPPQYLQRLYFKG-DMKKL--PDWIFKPKNVIRLGLDLSGLTEDPI---RVLHALPNLLQLRL  238 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  238 (261)
                      +.+. +  .+..++ +|++|++++ .++.+  |..++.+++|+.|++++|.+++.++   ..+..+|+|+.|++
T Consensus       498 l~~l-p--~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          498 LENV-D--GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCC-G--GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCC-c--ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8863 3  588899 999999999 99977  8889999999999999999887533   34456899999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=4.9e-15  Score=113.99  Aligned_cols=125  Identities=20%  Similarity=0.322  Sum_probs=107.3

Q ss_pred             cccceeecCCCCCCCCc-ccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l   85 (261)
                      +++++|++++|.+..++ ..+..+++|+.|++++|.++. .|..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57999999999999655 478899999999999999994 477899999999999999999977765 578999999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeec
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      ++|.+++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++.+
T Consensus       112 ~~N~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          112 NANKINC----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CSSCCCC----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCE----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            9998764          34567889999999999999  333345578899999999988

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=2.3e-15  Score=124.44  Aligned_cols=147  Identities=18%  Similarity=0.161  Sum_probs=75.6

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cC-CCCCCcEEeCCCCcccccc-hHhhccccccceeccce
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IG-NLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQY   88 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~   88 (261)
                      +.++++++.++.+|..+.  ..++.|++++|.++.++.. +. .+++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            355566666655554433  3456666666666644332 33 5666666666666666443 34555666666666666


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHH-H---hCCCCCc
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVL-I---ANLENLE  162 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-l---~~~~~L~  162 (261)
                      +++.          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++  +....++.. +   ..+++|+
T Consensus        99 ~l~~----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           99 HLHT----------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ--NQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCCE----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCSCCGGGTC----CTTCC
T ss_pred             cCCc----------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC--CcCCeeCHHHhcCcccCCcCC
Confidence            5432          11224555666666666666  222334455566666666655  111122222 1   3455666


Q ss_pred             eEEEeecccc
Q 042184          163 NLIVLMKSKE  172 (261)
Q Consensus       163 ~L~l~~n~~~  172 (261)
                      +|++++|.+.
T Consensus       167 ~L~L~~N~l~  176 (361)
T 2xot_A          167 LLDLSSNKLK  176 (361)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            6666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=4e-15  Score=115.22  Aligned_cols=152  Identities=17%  Similarity=0.147  Sum_probs=104.4

Q ss_pred             CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhc
Q 042184           55 LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMK  132 (261)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~  132 (261)
                      ...+.++.+++.+..+|..+.  ++|++|++++|.+++          ..+..+..+++|+.|++++| ...+ +..+..
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~----------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITK----------LEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             EeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCc----------cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            456788898888888876543  789999999997764          33567788888999998888 3333 234567


Q ss_pred             cccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCccc
Q 042184          133 LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVI  210 (261)
Q Consensus       133 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~  210 (261)
                      +++|+.|++++ +......+..+..+++|++|++++|.+.. .+ ..+..++ +|++|++++ .++.++. .+..+++|+
T Consensus        87 l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           87 LTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LP-RGIERLT-HLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CC-TTGGGCT-TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcCEEECCC-CcCCccChhHhCcchhhCeEeccCCcccc-cC-cccccCC-CCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            77788887776 23333333445677777777777777663 23 2356666 777777777 7776654 355677777


Q ss_pred             EEEeccCCCCCC
Q 042184          211 RLGLDLSGLTED  222 (261)
Q Consensus       211 ~L~l~~~~~~~~  222 (261)
                      .|++++|.+...
T Consensus       163 ~L~l~~N~~~c~  174 (229)
T 3e6j_A          163 HAYLFGNPWDCE  174 (229)
T ss_dssp             EEECTTSCBCTT
T ss_pred             EEEeeCCCccCC
Confidence            777777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=9.1e-15  Score=112.49  Aligned_cols=152  Identities=16%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc--hHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184           34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP--VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL  111 (261)
Q Consensus        34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (261)
                      -+.++++++.++.+|..+.  ..+++|++++|.++.++  ..+..+++|++|++++|.+++          ..+..+..+
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----------i~~~~~~~l   80 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----------IEEGAFEGA   80 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----------ECTTTTTTC
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----------ECHHHhCCC
Confidence            3578899988888887653  45789999999888553  347788889999999886652          122356666


Q ss_pred             CCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEE
Q 042184          112 TNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLY  191 (261)
Q Consensus       112 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  191 (261)
                      ++|+.|++++|                       ......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|+
T Consensus        81 ~~L~~L~Ls~N-----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~  135 (220)
T 2v70_A           81 SGVNEILLTSN-----------------------RLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLS-SVRLLS  135 (220)
T ss_dssp             TTCCEEECCSS-----------------------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCT-TCSEEE
T ss_pred             CCCCEEECCCC-----------------------ccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCc-cCCEEE
Confidence            66666666554                       1222223345666777777777777665544 4466677 788888


Q ss_pred             Eec-cCcCC-CccccCCCcccEEEeccCCCCCC
Q 042184          192 FKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       192 l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      +++ .++.+ |..+..+++|+.|++++|.+...
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            877 77755 55677788888888888877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.3e-15  Score=134.91  Aligned_cols=118  Identities=28%  Similarity=0.374  Sum_probs=98.6

Q ss_pred             CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      +..+..++.|++|++++|.+..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            45677889999999999999888888888999999999999999899889999999999999999998888899999999


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHH
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKEL  130 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l  130 (261)
                      +|++++|.++           .+|..++.+++|+.|++++|  .+..+..+
T Consensus       297 ~L~L~~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMVT-----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCCC-----------CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCCC-----------ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            9999999654           67888999999999999998  44444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=4.6e-16  Score=139.46  Aligned_cols=154  Identities=19%  Similarity=0.061  Sum_probs=66.7

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEE-----ecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLS-----LRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~-----l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      .++.|++.++.+...+..+....+|..+.     +..|.+...+..+..+.+|++|++++|.+..++..+..+++|++|+
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~  253 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY  253 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence            35556665555553333222222222222     2223333334445566666666666666666665556666666666


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN  163 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  163 (261)
                      +++|.++           .+|..+..+++|+.|++++| ...+|..++.+++|+.|++++  +....+|..++.+++|++
T Consensus       254 Ls~N~l~-----------~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~--N~l~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          254 LNGNSLT-----------ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD--NMVTTLPWEFGNLCNLQF  320 (727)
T ss_dssp             CTTSCCS-----------CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS--SCCCCCCSSTTSCTTCCC
T ss_pred             eeCCcCc-----------ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC--CCCCccChhhhcCCCccE
Confidence            6666442           45555666666666666666 334455566666666666665  222345555666666666


Q ss_pred             EEEeecccccccc
Q 042184          164 LIVLMKSKEEVLD  176 (261)
Q Consensus       164 L~l~~n~~~~~~~  176 (261)
                      |++++|.+.+..+
T Consensus       321 L~L~~N~l~~~~p  333 (727)
T 4b8c_D          321 LGVEGNPLEKQFL  333 (727)
T ss_dssp             EECTTSCCCSHHH
T ss_pred             EeCCCCccCCCCh
Confidence            6666666654433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=1.9e-14  Score=105.89  Aligned_cols=110  Identities=19%  Similarity=0.264  Sum_probs=96.7

Q ss_pred             CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccc--hHhhcc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELP--VEIRNL   77 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l   77 (261)
                      +|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.++  ..+..+
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  119 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL  119 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence            466788999999999999999977 778899999999999999995 7777777999999999999999765  678899


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCC----cccCCCCCCeEecccc
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHP----GFGSLTNLQKLCIIEA  122 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~  122 (261)
                      ++|++|++++|.++           ..+.    .+..+++|+.|++++|
T Consensus       120 ~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          120 ECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             SCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCC
Confidence            99999999999665           4454    7889999999999887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.7e-14  Score=104.01  Aligned_cols=109  Identities=18%  Similarity=0.262  Sum_probs=94.2

Q ss_pred             CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccc--hHhhcc
Q 042184            1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELP--VEIRNL   77 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l   77 (261)
                      +|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.++  ..+..+
T Consensus        34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l  112 (149)
T 2je0_A           34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL  112 (149)
T ss_dssp             CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred             HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence            466788999999999999999977 778899999999999999995 8877778999999999999998654  778999


Q ss_pred             ccccceeccceecccCchhhhhhhhhcCC----cccCCCCCCeEeccc
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHP----GFGSLTNLQKLCIIE  121 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~  121 (261)
                      ++|++|++++|.++           ..+.    .+..+++|+.|++++
T Consensus       113 ~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          113 ENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccCCC
Confidence            99999999999765           3443    678899999998763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=9.3e-14  Score=113.36  Aligned_cols=79  Identities=18%  Similarity=0.271  Sum_probs=45.9

Q ss_pred             ccccceeecCCCCCC--------------------CCc-ccccC--------cccccEEEecCCCceeccc-ccCCCCCC
Q 042184            8 FKLMKVLDLEDAPVV--------------------YLP-EGVGS--------LLNLHYLSLRNKKVKIIPK-SIGNLLGL   57 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~--------------------~~~-~~~~~--------l~~L~~L~l~~~~i~~~~~-~l~~l~~L   57 (261)
                      +++|++||+++|.+.                    .+| ..|.+        |++|+.+++.+ .++.+++ ++.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999998776                    112 23344        66666666666 5554443 35666667


Q ss_pred             cEEeCCCCcccccc-hHhhccccccceeccc
Q 042184           58 ESLDLKNTLVRELP-VEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        58 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~   87 (261)
                      ++++++.|.+..++ ..+..+.++..+....
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            77777666655332 2344455555554433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=9.1e-16  Score=116.16  Aligned_cols=150  Identities=20%  Similarity=0.225  Sum_probs=114.2

Q ss_pred             CccccceeecCCCCCC-------CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccc
Q 042184            7 NFKLMKVLDLEDAPVV-------YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKK   79 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~-------~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~   79 (261)
                      ..+.++.++++.+.+.       .+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~   94 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT   94 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence            3455556666655544       34448888999999999999998887 788899999999999999988888888899


Q ss_pred             ccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH--HHHHHhccccccEEEeeccCCCccch-----
Q 042184           80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE--VLKELMKLRQLRKLSIRPQNGNGKDL-----  151 (261)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~-----  151 (261)
                      |++|++++|.+++           ++ .+..+++|+.|++++| ...  ....+..+++|+.|++.+ +......     
T Consensus        95 L~~L~L~~N~l~~-----------l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~  161 (198)
T 1ds9_A           95 LEELWISYNQIAS-----------LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG-NPLYNDYKENNA  161 (198)
T ss_dssp             CSEEEEEEEECCC-----------HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS-CHHHHHHHTTTT
T ss_pred             CCEEECcCCcCCc-----------CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC-Cccccccccccc
Confidence            9999999998763           33 5777889999999999 333  235788999999999987 2222221     


Q ss_pred             -----HHHHhCCCCCceEEEeecccc
Q 042184          152 -----CVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       152 -----~~~l~~~~~L~~L~l~~n~~~  172 (261)
                           ...+..+++|++|+  ++.+.
T Consensus       162 ~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             hHHHHHHHHHhCCCcEEEC--CcccC
Confidence                 22478889999987  55443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=1.7e-15  Score=114.66  Aligned_cols=134  Identities=17%  Similarity=0.201  Sum_probs=102.6

Q ss_pred             ceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-
Q 042184           44 VKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-  122 (261)
Q Consensus        44 i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-  122 (261)
                      ++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.++           .+|..+..+++|+.|++++| 
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-----------~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-----------KIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-----------SCSSHHHHHHHCSEEEEEEEE
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-----------cccchhhcCCcCCEEECcCCc
Confidence            4455557888999999999999998887 7888999999999999764           56777777789999999999 


Q ss_pred             chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccccccc---------ccccCCccccceEE
Q 042184          123 DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDL---------QSLSNPPQYLQRLY  191 (261)
Q Consensus       123 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~---------~~~~~~~~~L~~L~  191 (261)
                      ...++ .+..+++|+.|+++++..........+..+++|++|++++|.+.+..+.         ..+..++ +|+.|+
T Consensus       105 l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-~L~~Ld  180 (198)
T 1ds9_A          105 IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKKLD  180 (198)
T ss_dssp             CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-SCSEEC
T ss_pred             CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-CcEEEC
Confidence            33344 6888999999999882222112224788899999999999987654321         2256778 899886

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=7.7e-14  Score=104.98  Aligned_cols=120  Identities=18%  Similarity=0.242  Sum_probs=87.7

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc--ccCCCCCCcEEeCCCCccccc-chHhhccccccceeccce
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK--SIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~   88 (261)
                      +++++++++++.+|..+.  .+++.|++++|.++.++.  .+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            678888888888887654  388899999988886654  377888999999999888854 667888888999999988


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeec
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      ++++          ..+..+..+++|+.|++++|  ....+..+..+++|+.|++++
T Consensus        89 ~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           89 KIKE----------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCCE----------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cCCc----------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            7653          23345677788888887777  333344455555666666555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=2.3e-13  Score=102.34  Aligned_cols=103  Identities=20%  Similarity=0.295  Sum_probs=90.8

Q ss_pred             ccceeecCCCCCCCCcc--cccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccc-hHhhccccccceec
Q 042184           10 LMKVLDLEDAPVVYLPE--GVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMV   85 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l   85 (261)
                      ++++|++++|.+..++.  .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            89999999999997664  388999999999999999944 778999999999999999999554 45888999999999


Q ss_pred             cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ++|++++          ..+..+..+++|+.|++++|
T Consensus       110 ~~N~l~~----------~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          110 YDNQISC----------VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CSSCCCE----------ECTTSSTTCTTCCEEECTTC
T ss_pred             CCCcCCe----------eCHHHhhcCCCCCEEEeCCC
Confidence            9998764          45678889999999999998

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=5.9e-13  Score=100.18  Aligned_cols=120  Identities=23%  Similarity=0.309  Sum_probs=93.6

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceec
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYF   90 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~   90 (261)
                      ++++++++.++.+|..+.  ++|+.|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578888888888876553  6788899999888888888888889999999998888654 4578888899999998876


Q ss_pred             ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH-HHHhccccccEEEeec
Q 042184           91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRP  143 (261)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~  143 (261)
                      +.          ..+..+..+++|+.|++++| ...++ ..+..+++|+.|++.+
T Consensus        91 ~~----------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           91 RC----------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CB----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CE----------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            53          23346788888999999888 33333 3477788888898887

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=2.7e-13  Score=102.08  Aligned_cols=125  Identities=21%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             cEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCC
Q 042184           35 HYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNL  114 (261)
Q Consensus        35 ~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L  114 (261)
                      ++++++++.++.+|..+.  ++|++|++++|.++.+|..+..+++|++|++++|.+++          ..+..+..+++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----------i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----------LSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----------CCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----------eCHhHccCCCCC
Confidence            345555555555554432  45666666666555555555556666666666654432          122345555566


Q ss_pred             CeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184          115 QKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       115 ~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      +.|++++|  ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666555  222233455555666666655 2222222223455555666666655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=8e-14  Score=103.39  Aligned_cols=131  Identities=19%  Similarity=0.251  Sum_probs=88.7

Q ss_pred             cccCcccccEEEecCCCceecccccCCC-CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcC
Q 042184           27 GVGSLLNLHYLSLRNKKVKIIPKSIGNL-LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH  105 (261)
Q Consensus        27 ~~~~l~~L~~L~l~~~~i~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  105 (261)
                      .+..+.+|+.|++++|.++.++. +..+ ++|++|++++|.++.+ ..+..+++|++|++++|.++           .++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-----------~~~   80 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-----------RIG   80 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-----------EEC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-----------ccC
Confidence            34567888888888888887654 3444 4888888888888766 56777888888888888654           345


Q ss_pred             Ccc-cCCCCCCeEecccc-chHHHH--HHhccccccEEEeeccCCCccchHH----HHhCCCCCceEEEeecccc
Q 042184          106 PGF-GSLTNLQKLCIIEA-DSEVLK--ELMKLRQLRKLSIRPQNGNGKDLCV----LIANLENLENLIVLMKSKE  172 (261)
Q Consensus       106 ~~~-~~~~~L~~L~l~~~-~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~  172 (261)
                      +.+ ..+++|+.|++++| ...++.  .+..+++|+.|++++  +.....+.    .+..+++|+.|++++|...
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~--N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR--NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS--SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC--CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            443 67778888888777 333333  566777777777776  22223333    3666777777777776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=1.2e-12  Score=106.85  Aligned_cols=219  Identities=15%  Similarity=0.153  Sum_probs=119.7

Q ss_pred             ccccceeecCCCCCCCCcccccC-cccccEEEecCCCce--------------------eccc-ccCC--------CCCC
Q 042184            8 FKLMKVLDLEDAPVVYLPEGVGS-LLNLHYLSLRNKKVK--------------------IIPK-SIGN--------LLGL   57 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~~~~~-l~~L~~L~l~~~~i~--------------------~~~~-~l~~--------l~~L   57 (261)
                      +.+++.|.++++--..-...+.. +++|+.|++++|++.                    .+|+ .+.+        +.+|
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            56788888876521111122233 788999999999876                    3333 3456        8999


Q ss_pred             cEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--------------
Q 042184           58 ESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--------------  122 (261)
Q Consensus        58 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--------------  122 (261)
                      ++|++.. .++.++. .+..|++|+.++++.|.++.          --+.++..+.++..+.....              
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~----------i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN----------LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE----------ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccc----------cchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence            9999988 7776644 57889999999999886532          12234445555554443331              


Q ss_pred             --------------chHHHHHHh----ccccccEEEeeccCCCccchHHHH-hCCCCCceEEEeecccccccccccccCC
Q 042184          123 --------------DSEVLKELM----KLRQLRKLSIRPQNGNGKDLCVLI-ANLENLENLIVLMKSKEEVLDLQSLSNP  183 (261)
Q Consensus       123 --------------~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~  183 (261)
                                    ...++..+.    ...++..+.+.+  .........+ ..+++|+++++++|.+..... ..|..+
T Consensus       173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~  249 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQK  249 (329)
T ss_dssp             EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTC
T ss_pred             ccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCC
Confidence                          001111110    123334444433  1111111122 235666666666655443322 446666


Q ss_pred             ccccceEEEeccCcCCCcc-ccCCCccc-EEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184          184 PQYLQRLYFKGDMKKLPDW-IFKPKNVI-RLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY  242 (261)
Q Consensus       184 ~~~L~~L~l~~~l~~l~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~  242 (261)
                      + +|+.+++.++++.++.. +..|.+|+ .+++.. .++.....++.+|++|+.+++. |.+
T Consensus       250 ~-~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          250 K-YLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             T-TCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             C-CCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            6 66666666555544433 44566666 666655 4443334455666666666665 544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=3.6e-13  Score=111.48  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             cccceeecCCCCCCC-----Cccccc-CcccccEEEecCCCce-e-cccccCCCCCCcEEeCCCCcccc-----cchHh-
Q 042184            9 KLMKVLDLEDAPVVY-----LPEGVG-SLLNLHYLSLRNKKVK-I-IPKSIGNLLGLESLDLKNTLVRE-----LPVEI-   74 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~-----~~~~~~-~l~~L~~L~l~~~~i~-~-~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~-   74 (261)
                      +.|++|++++|.++.     +...+. ..++|+.|++++|.++ . +......+.+|++|++++|.++.     +...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345556666655551     111111 1245555565555554 1 11111223455555555555541     11111 


Q ss_pred             hccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEEeeccCCCc
Q 042184           75 RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSIRPQNGNG  148 (261)
Q Consensus        75 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l~~~~~~~  148 (261)
                      ...++|++|++++|.++..      ....++..+..+++|+.|++++|  ..    .+...+...++|+.|+++++....
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAA------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHH------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChH------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            1234555555555554321      22333444445555555555555  11    123334444555555555421111


Q ss_pred             c---chHHHHhCCCCCceEEEeecccc
Q 042184          149 K---DLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       149 ~---~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      .   .+...+...++|++|++++|.+.
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            1   22333344455555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=7.4e-12  Score=92.75  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=78.8

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceeccce
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQY   88 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   88 (261)
                      .+.++++++++..+|..+.  ++|+.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4667777777777765443  678888888888775554 356778888888888887765543 567788888888888


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH-HHHhccccccEEEeec
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRP  143 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~  143 (261)
                      .+++          ..+..+..+++|+.|++++| ...++ ..+..+++|+.|++++
T Consensus        87 ~l~~----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           87 KLQS----------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CCCC----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             Cccc----------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            6642          12233566777777777766 22222 2234555666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.30  E-value=2e-11  Score=102.03  Aligned_cols=218  Identities=11%  Similarity=0.109  Sum_probs=125.6

Q ss_pred             cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      +|.++ +|+.+.+..+ +..+. ..|.++ +|+.+.+.+ .++.++ ..+.+|.+|+.+++..|.++.++...-.+.+|+
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~  206 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE  206 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence            45554 5777777655 44333 344453 577777765 455444 346777888888887777776655444466777


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN  160 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  160 (261)
                      .+.+..+ ++          .--..++..|++|+.+.+..+ .......+.. .+|+.+.+..  .....-...+..|++
T Consensus       207 ~l~lp~~-l~----------~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~  272 (401)
T 4fdw_A          207 EVLLPVT-LK----------EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPE  272 (401)
T ss_dssp             EEECCTT-CC----------EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTT
T ss_pred             EEEeCCc-hh----------eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCC
Confidence            7777643 21          112345667777777777665 1111222333 4677777744  222222445667777


Q ss_pred             CceEEEeecccc----cccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184          161 LENLIVLMKSKE----EVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ  235 (261)
Q Consensus       161 L~~L~l~~n~~~----~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  235 (261)
                      |+.+++.++...    ..++-..+..++ +|+.+.+..+++.++. .+..|.+|+.+.+..+ ++.....++.+| +|+.
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence            777777765432    012224466676 7777777665554443 3445677777777544 333333455666 7777


Q ss_pred             eEec-ccc
Q 042184          236 LRLA-GTY  242 (261)
Q Consensus       236 L~l~-n~~  242 (261)
                      +++. |.+
T Consensus       350 l~l~~n~~  357 (401)
T 4fdw_A          350 VKVEGTTP  357 (401)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            7776 543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=1.4e-11  Score=91.22  Aligned_cols=104  Identities=26%  Similarity=0.360  Sum_probs=88.8

Q ss_pred             ccccceeecCCCCCCCCcc-cccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch-Hhhcccccccee
Q 042184            8 FKLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLM   84 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~   84 (261)
                      .++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3689999999999996664 568899999999999999976654 6899999999999999997665 467899999999


Q ss_pred             ccceecccCchhhhhhhhhcCCc-ccCCCCCCeEecccc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA  122 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~  122 (261)
                      +++|.++           .++.. +..+++|+.|++++|
T Consensus       107 l~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          107 LDTNQLK-----------SVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCSSCCS-----------CCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCcce-----------EeCHHHhcCCcccCEEEecCC
Confidence            9999775           34444 578999999999999

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1.3e-11  Score=90.83  Aligned_cols=100  Identities=20%  Similarity=0.354  Sum_probs=85.3

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceeccc
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQ   87 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~   87 (261)
                      ..++++++++.++.+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35789999999999887664  8899999999999965 56688999999999999999977664 57899999999999


Q ss_pred             eecccCchhhhhhhhhcCC-cccCCCCCCeEecccc
Q 042184           88 YYFTSGSSIAEEAAAKLHP-GFGSLTNLQKLCIIEA  122 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~  122 (261)
                      |+++           .++. .+..+++|+.|++++|
T Consensus        88 N~l~-----------~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           88 NQLK-----------SIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SCCC-----------CCCTTTTTTCTTCCEEECCSS
T ss_pred             CccC-----------EeCHHHhcCCCCCCEEEeCCC
Confidence            9775           3444 5888999999999998

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=1.5e-11  Score=90.95  Aligned_cols=99  Identities=16%  Similarity=0.354  Sum_probs=84.5

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceeccce
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQY   88 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   88 (261)
                      -+.++++++.+..+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3679999999998887664  8899999999999955 56788999999999999999987765 578999999999999


Q ss_pred             ecccCchhhhhhhhhcCC-cccCCCCCCeEecccc
Q 042184           89 YFTSGSSIAEEAAAKLHP-GFGSLTNLQKLCIIEA  122 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~  122 (261)
                      +++           .++. .+..+++|+.|++++|
T Consensus        92 ~l~-----------~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           92 HLK-----------SIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCC-----------CCCTTTTTTCTTCSEEECCSS
T ss_pred             ccc-----------eeCHHHhccccCCCEEEeCCC
Confidence            765           4555 4888999999999988

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.26  E-value=5.7e-11  Score=99.27  Aligned_cols=220  Identities=11%  Similarity=0.112  Sum_probs=158.6

Q ss_pred             ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKL   80 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L   80 (261)
                      .+|.++ +|+.+.+.. .+..+. ..|.+|++|+.+++.+|.++.++.....+.+|+.+.+..+ +..++ ..+..|++|
T Consensus       152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L  228 (401)
T 4fdw_A          152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQL  228 (401)
T ss_dssp             TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred             HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCC
Confidence            356665 689999886 566444 5788999999999999999988776555799999999855 55443 467889999


Q ss_pred             cceeccceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCC----ccchHHH
Q 042184           81 RYLMVYQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGN----GKDLCVL  154 (261)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~  154 (261)
                      +.+.+..+ ++           .++ .++.. .+|+.+.+..+ .......+..+++|+.+.+.++...    .......
T Consensus       229 ~~l~l~~~-l~-----------~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          229 KTIEIPEN-VS-----------TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             CCEECCTT-CC-----------EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             CEEecCCC-cc-----------Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            99999874 22           333 34444 68999999766 3334556888999999999772111    1233457


Q ss_pred             HhCCCCCceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC-c
Q 042184          155 IANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP-N  232 (261)
Q Consensus       155 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~  232 (261)
                      +..|++|+.+++..+ +. .+....|..+. +|+.+.+..+++.+.. .+..| +|+.+.+.+|.........+.+++ +
T Consensus       296 F~~c~~L~~l~l~~~-i~-~I~~~aF~~c~-~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~  371 (401)
T 4fdw_A          296 LEGCPKLARFEIPES-IR-ILGQGLLGGNR-KVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD  371 (401)
T ss_dssp             TTTCTTCCEECCCTT-CC-EECTTTTTTCC-SCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred             hhCCccCCeEEeCCc-eE-EEhhhhhcCCC-CccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence            889999999999853 33 33335688888 9999999667776654 46668 999999999976654444555664 7


Q ss_pred             ccceEec-ccc
Q 042184          233 LLQLRLA-GTY  242 (261)
Q Consensus       233 L~~L~l~-n~~  242 (261)
                      ++.+.+- +.+
T Consensus       372 l~~l~vp~~~~  382 (401)
T 4fdw_A          372 ITVIRVPAESV  382 (401)
T ss_dssp             CCEEEECGGGH
T ss_pred             ccEEEeCHHHH
Confidence            7888887 543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=2.6e-11  Score=89.56  Aligned_cols=83  Identities=27%  Similarity=0.416  Sum_probs=74.6

Q ss_pred             cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l   85 (261)
                      ++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++.. +..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            7899999999999966 57889999999999999999988765 58999999999999999987765 888999999999


Q ss_pred             cceecc
Q 042184           86 YQYYFT   91 (261)
Q Consensus        86 ~~~~~~   91 (261)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            999764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=5.4e-11  Score=87.51  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=74.1

Q ss_pred             cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184            9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV   85 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l   85 (261)
                      ++|++|++++|.++.+ +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++. .+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            7899999999999966 57789999999999999999977765 6899999999999999997766 4889999999999


Q ss_pred             cceecc
Q 042184           86 YQYYFT   91 (261)
Q Consensus        86 ~~~~~~   91 (261)
                      ++|.++
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            999764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=101.69  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=105.1

Q ss_pred             ccccceeecCCCCCC-C-CcccccCcccccEEEecCCCceec-cc----cc-CCCCCCcEEeCCCCccc-----ccchHh
Q 042184            8 FKLMKVLDLEDAPVV-Y-LPEGVGSLLNLHYLSLRNKKVKII-PK----SI-GNLLGLESLDLKNTLVR-----ELPVEI   74 (261)
Q Consensus         8 ~~~L~~L~l~~~~l~-~-~~~~~~~l~~L~~L~l~~~~i~~~-~~----~l-~~l~~L~~L~l~~~~~~-----~~~~~~   74 (261)
                      .++|++|++++|.+. . +......+++|+.|++++|.++.. ..    .+ ...++|++|++++|.++     .++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            379999999999988 2 223233567899999999998722 12    22 35789999999999987     245566


Q ss_pred             hccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEEeeccCCCc
Q 042184           75 RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSIRPQNGNG  148 (261)
Q Consensus        75 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l~~~~~~~  148 (261)
                      ..+++|++|++++|.++..      ....++..+...++|+.|++++|  ..    .+...+...++|+.|++++ +...
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~------g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDE------GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF-NELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHH------HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT-SSCC
T ss_pred             hcCCCcCEEeCCCCCCCcH------HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC-CCCC
Confidence            7899999999999988642      34456677788889999999999  32    3455677789999999998 3344


Q ss_pred             cchHHHHhC
Q 042184          149 KDLCVLIAN  157 (261)
Q Consensus       149 ~~~~~~l~~  157 (261)
                      ..-...+..
T Consensus       253 ~~g~~~L~~  261 (372)
T 3un9_A          253 SEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=5.1e-10  Score=91.76  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=78.9

Q ss_pred             ceeecCCC-CCCCCcccccCcccccEEEecC-CCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccc
Q 042184           12 KVLDLEDA-PVVYLPEGVGSLLNLHYLSLRN-KKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        12 ~~L~l~~~-~l~~~~~~~~~l~~L~~L~l~~-~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~   87 (261)
                      ..++.+++ ++..+|. +..+++|+.|+|++ |.++.++ ..+..+++|++|+|++|.++.++ ..+..+++|++|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688887 8888888 88899999999986 8898666 56889999999999999988554 4678899999999999


Q ss_pred             eecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      |+++           .+|........|+.|++.+|
T Consensus        90 N~l~-----------~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           90 NALE-----------SLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SCCS-----------CCCSTTTCSCCCCEEECCSS
T ss_pred             Cccc-----------eeCHHHcccCCceEEEeeCC
Confidence            9775           35544333334999999888

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1.2e-09  Score=89.58  Aligned_cols=90  Identities=14%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             CCccccCccccceeecCC-CCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhcc
Q 042184            1 MNTSIANFKLMKVLDLED-APVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNL   77 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~-~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l   77 (261)
                      ||. |..+++|++|++++ |.+..++ ..+.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+..+|......
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence            566 88899999999996 8999665 6789999999999999999954 456889999999999999999877655444


Q ss_pred             ccccceeccceecc
Q 042184           78 KKLRYLMVYQYYFT   91 (261)
Q Consensus        78 ~~L~~L~l~~~~~~   91 (261)
                      .+|+.|++.+|.+.
T Consensus       103 ~~L~~l~l~~N~~~  116 (347)
T 2ifg_A          103 LSLQELVLSGNPLH  116 (347)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             CCceEEEeeCCCcc
Confidence            44999999999775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=5.9e-10  Score=91.68  Aligned_cols=175  Identities=17%  Similarity=0.192  Sum_probs=111.6

Q ss_pred             cCCCCCCcEEeCCCCccc----------ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184           51 IGNLLGLESLDLKNTLVR----------ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII  120 (261)
Q Consensus        51 l~~l~~L~~L~l~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  120 (261)
                      +..+++|+.|.+.+....          .+...+..+|+|+.|+++++.           ...++. +. +++|+.|++.
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-----------~l~l~~-~~-~~~L~~L~L~  201 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-----------NLSIGK-KP-RPNLKSLEII  201 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-----------TCBCCS-CB-CTTCSEEEEE
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-----------Cceecc-cc-CCCCcEEEEe
Confidence            445677888877543221          244556778999999998762           113333 33 7889999998


Q ss_pred             cc--chHHHHHHh--ccccccEEEeecc-CC-C----ccchHHHH--hCCCCCceEEEeecccccccc--cccccCCccc
Q 042184          121 EA--DSEVLKELM--KLRQLRKLSIRPQ-NG-N----GKDLCVLI--ANLENLENLIVLMKSKEEVLD--LQSLSNPPQY  186 (261)
Q Consensus       121 ~~--~~~~~~~l~--~~~~L~~L~l~~~-~~-~----~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~  186 (261)
                      .+  .......++  .+|+|+.|++... +. .    ...+...+  ..+++|++|++.+|.+.....  +.....+| +
T Consensus       202 ~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~  280 (362)
T 2ra8_A          202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-Q  280 (362)
T ss_dssp             CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-G
T ss_pred             cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-C
Confidence            77  444555555  6899999998531 11 1    11122222  357899999998887653221  11123467 8


Q ss_pred             cceEEEec-cCcC-----CCccccCCCcccEEEeccCCCCCChhHHhcc-CCcccceEec-cc
Q 042184          187 LQRLYFKG-DMKK-----LPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA-LPNLLQLRLA-GT  241 (261)
Q Consensus       187 L~~L~l~~-~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~-n~  241 (261)
                      |++|+|+. .++.     ++..+..+++|+.|++++|.+++.....+.+ +  ...++++ +.
T Consensus       281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            99999987 6662     4444456788999999999888766665554 3  4567887 54

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=1.3e-10  Score=86.61  Aligned_cols=112  Identities=17%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             ccccCcccccEEEecCC-Cce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCc
Q 042184           26 EGVGSLLNLHYLSLRNK-KVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGS   94 (261)
Q Consensus        26 ~~~~~l~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~   94 (261)
                      ..+...+.|+.|++++| .+.     .+...+...++|++|++++|.+.     .+...+...++|++|++++|.++.. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~-  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS-  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-
Confidence            44566788888888888 775     24455667788888888888877     2445566677888999988887642 


Q ss_pred             hhhhhhhhhcCCcccCCCCCCeEec--ccc--ch----HHHHHHhccccccEEEeec
Q 042184           95 SIAEEAAAKLHPGFGSLTNLQKLCI--IEA--DS----EVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~L~~L~l--~~~--~~----~~~~~l~~~~~L~~L~l~~  143 (261)
                           ....+...+...++|+.|++  ++|  ..    .+...+...++|+.|++++
T Consensus       109 -----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          109 -----GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             -----HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             -----HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence                 45556677777888999999  666  22    2445566778899998877

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=6.2e-09  Score=85.60  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=76.0

Q ss_pred             ccCccccceeecCCCCCC----------CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-ccchH
Q 042184            5 IANFKLMKVLDLEDAPVV----------YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-ELPVE   73 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~   73 (261)
                      +.++++|+.|.+.+....          .+...+..+++|+.|.++++.-..++. + .+++|++|++..+.+. .....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            445667777766543221          133334556777777776653112333 2 2667777777666655 22223


Q ss_pred             hh--ccccccceeccce--ecccCchhhhhhhhhcCCcc--cCCCCCCeEecccc--chHHHHHHh---ccccccEEEee
Q 042184           74 IR--NLKKLRYLMVYQY--YFTSGSSIAEEAAAKLHPGF--GSLTNLQKLCIIEA--DSEVLKELM---KLRQLRKLSIR  142 (261)
Q Consensus        74 ~~--~l~~L~~L~l~~~--~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~--~~~~~~~l~---~~~~L~~L~l~  142 (261)
                      +.  .+|+|+.|+++.+  ...+.     ..+..+...+  ..+++|+.|.+.+|  ....+..+.   .+++|++|+++
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~-----~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFD-----GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCC-----SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHccCCCCcEEEEeccccccccc-----hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            33  5677777776431  11000     0011111222  23566777776665  211222222   35566666665


Q ss_pred             ccCCCccc----hHHHHhCCCCCceEEEeecccc
Q 042184          143 PQNGNGKD----LCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       143 ~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      . +.....    ++..+..+++|+.|++++|.+.
T Consensus       288 ~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          288 A-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             S-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             C-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5 222221    2222334556666666665443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=5.6e-09  Score=77.74  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             cccccCCCCCCcEEeCCCC-ccc-----ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184           47 IPKSIGNLLGLESLDLKNT-LVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII  120 (261)
Q Consensus        47 ~~~~l~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  120 (261)
                      +...+...++|++|++++| .+.     .+...+...++|++|++++|.++..      ....+...+...++|+.|+++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~------g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP------VAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH------HHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH------HHHHHHHHHHhCCCcCEEECc
Confidence            3345667888888988888 776     2445566678888888888877542      344556666677788888888


Q ss_pred             cc--chH----HHHHHhccccccEEEe--eccCCCcc----chHHHHhCCCCCceEEEeecccc
Q 042184          121 EA--DSE----VLKELMKLRQLRKLSI--RPQNGNGK----DLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus       121 ~~--~~~----~~~~l~~~~~L~~L~l--~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                      +|  ...    +...+...++|+.|++  .+ +....    .+...+...+.|++|++++|.+.
T Consensus       102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          102 SNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            88  222    3455666778888888  54 22222    24556666788888888888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.62  E-value=3.8e-07  Score=75.95  Aligned_cols=60  Identities=12%  Similarity=0.152  Sum_probs=33.2

Q ss_pred             ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCC
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKN   64 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~   64 (261)
                      .+|..|.+|+.+.+..+ +..+. ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..
T Consensus       108 ~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          108 QAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             hhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccc
Confidence            34666777777766554 33222 44566777777777543 22222 2345566666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.60  E-value=1.7e-07  Score=78.15  Aligned_cols=125  Identities=12%  Similarity=0.034  Sum_probs=72.9

Q ss_pred             cccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184          107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ  185 (261)
Q Consensus       107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  185 (261)
                      .+..+..++.+.+..+ .......+..+..++.+....  ..  .....+..+.+|+.+.+..+ +. .+.-..+..+. 
T Consensus       248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~--~~--i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~-  320 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS--VI--VPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCT-  320 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS--SE--ECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCT-
T ss_pred             cccccccceeEEcCCCcceeeccccccccccceeccCc--ee--eccccccccccccccccccc-cc-eechhhhcCCC-
Confidence            4445556666655544 111222344455555554432  11  11124556778888887654 22 22224577777 


Q ss_pred             ccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          186 YLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       186 ~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +|+.+.+...++.+.. .+..|.+|+.+.+..+ ++.....++.+|++|+.+++.
T Consensus       321 ~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          321 SLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             CCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            8888888666665543 3556888888888665 443334567788888888887

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.59  E-value=5.7e-07  Score=74.93  Aligned_cols=81  Identities=12%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             HhCCCCCceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcc
Q 042184          155 IANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNL  233 (261)
Q Consensus       155 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  233 (261)
                      +.+++.|+.+.+... +. ..+-..|..+. +|+.+.+..+++.+.. .+..|.+|+.+.+..+ ++.....++.+|++|
T Consensus       284 F~~c~~L~~i~l~~~-i~-~I~~~aF~~c~-~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          284 FMNCPALQDIEFSSR-IT-ELPESVFAGCI-SLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             cccccccccccCCCc-cc-ccCceeecCCC-CcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            344555555555421 11 22223466666 7888877666665543 3556788888888544 444445567788888


Q ss_pred             cceEec
Q 042184          234 LQLRLA  239 (261)
Q Consensus       234 ~~L~l~  239 (261)
                      +.+++.
T Consensus       360 ~~i~~~  365 (394)
T 4gt6_A          360 NNIEYS  365 (394)
T ss_dssp             CEEEES
T ss_pred             CEEEEC
Confidence            888887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=7.8e-07  Score=64.92  Aligned_cols=86  Identities=13%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHHhcc----ccccEEEeeccCCCccc
Q 042184           78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKELMKL----RQLRKLSIRPQNGNGKD  150 (261)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~----~~L~~L~l~~~~~~~~~  150 (261)
                      .+|+.|++++|.++.          .-...+..|++|+.|++++|   ++.....++..    ++|+.|++++|...++.
T Consensus        61 ~~L~~LDLs~~~Itd----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCEEEEEEESCCCCG----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ceEeEEeCcCCCccH----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            457777777776543          11133456777777777777   55555666653    57888888886656665


Q ss_pred             hHHHHhCCCCCceEEEeeccccc
Q 042184          151 LCVLIANLENLENLIVLMKSKEE  173 (261)
Q Consensus       151 ~~~~l~~~~~L~~L~l~~n~~~~  173 (261)
                      -...+..+++|++|++++|...+
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCC
Confidence            56677788888888888875443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.37  E-value=2.4e-06  Score=71.15  Aligned_cols=213  Identities=9%  Similarity=-0.012  Sum_probs=134.1

Q ss_pred             ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR   81 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~   81 (261)
                      ..|..|.+|+.+.+..+ ++.+ ...+.++..|+.+.+..+... +.+......+|+.+.+......--...+..+.+++
T Consensus       179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~  256 (394)
T 4fs7_A          179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLE  256 (394)
T ss_dssp             TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCC
T ss_pred             ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCceecccccccccccce
Confidence            45778999999998776 4433 356678888888887665432 33334456778888876543222223456778888


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL  161 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  161 (261)
                      .+.+..+..           ..-...+..+..++.+..... ......+..+.+|+.+.+..  .....-...+..|.+|
T Consensus       257 ~~~~~~~~~-----------~i~~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          257 SISIQNNKL-----------RIGGSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSL  322 (394)
T ss_dssp             EEEECCTTC-----------EECSCTTTTCTTCCEEEECSS-EECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTC
T ss_pred             eEEcCCCcc-----------eeeccccccccccceeccCce-eecccccccccccccccccc--ccceechhhhcCCCCC
Confidence            888766522           123456677777877776554 01112356677888888765  2222223457788889


Q ss_pred             ceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccce
Q 042184          162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQL  236 (261)
Q Consensus       162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  236 (261)
                      +.+++..+ +. .+.-..+.++. +|+.+.+..+++.+.. .+..|.+|+.+++..+- . .....+.+|++|+.+
T Consensus       323 ~~i~lp~~-v~-~I~~~aF~~c~-~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          323 VSIDLPYL-VE-EIGKRSFRGCT-SLSNINFPLSLRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECCCTT-CC-EECTTTTTTCT-TCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             CEEEeCCc-cc-EEhHHhccCCC-CCCEEEECccccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            98888653 22 23334577788 8999888666665544 46678999999887652 1 122356677777754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=5.2e-07  Score=70.67  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             ccCccccce--eecCCCCCCCCcccc----cCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhh
Q 042184            5 IANFKLMKV--LDLEDAPVVYLPEGV----GSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIR   75 (261)
Q Consensus         5 ~~~~~~L~~--L~l~~~~l~~~~~~~----~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~   75 (261)
                      |...+.|+.  ++++.|....++..+    ..+++|+.|++++|.++.+   |..+..+++|++|+|++|.+..+ ..+.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence            344455655  555666433332211    3578888888888887743   34556788888888888888754 2233


Q ss_pred             ccc--cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184           76 NLK--KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII  120 (261)
Q Consensus        76 ~l~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  120 (261)
                      .+.  +|++|++++|.+.+..+-   ........+..+++|+.|+-.
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~---~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRD---QSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSS---HHHHHHHHHHHCTTCCEESSC
T ss_pred             hcccCCcceEEccCCcCccccCc---chhHHHHHHHHCcccCeECCc
Confidence            343  888888888876531000   000111345667788888643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=9.9e-07  Score=64.40  Aligned_cols=83  Identities=12%  Similarity=-0.018  Sum_probs=41.3

Q ss_pred             ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCC----ccccceEEEec--cCc--CCCccccCCC
Q 042184          136 LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNP----PQYLQRLYFKG--DMK--KLPDWIFKPK  207 (261)
Q Consensus       136 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~~L~~L~l~~--~l~--~l~~~~~~~~  207 (261)
                      |+.|+++++. ....-...+..+++|++|++++|...++..+..+..+    + +|++|++++  .++  .+. .+..++
T Consensus        63 L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~-~L~~L~Ls~C~~ITD~Gl~-~L~~~~  139 (176)
T 3e4g_A           63 IQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-SMLEMEIISCGNVTDKGII-ALHHFR  139 (176)
T ss_dssp             EEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH-HCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred             EeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC-CCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence            4444454422 2222223344555555555555543333332333332    2 466666655  455  221 244578


Q ss_pred             cccEEEeccCC-CCC
Q 042184          208 NVIRLGLDLSG-LTE  221 (261)
Q Consensus       208 ~L~~L~l~~~~-~~~  221 (261)
                      +|++|++++|. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            88888888884 555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=1.8e-07  Score=73.31  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             ccCcccccE--EEecCCCceecccc----cCCCCCCcEEeCCCCcccc---cchHhhccccccceeccceecccCchhhh
Q 042184           28 VGSLLNLHY--LSLRNKKVKIIPKS----IGNLLGLESLDLKNTLVRE---LPVEIRNLKKLRYLMVYQYYFTSGSSIAE   98 (261)
Q Consensus        28 ~~~l~~L~~--L~l~~~~i~~~~~~----l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   98 (261)
                      +...+.|..  ++++.|....++..    ..++++|++|++++|.+..   ++..+..+++|+.|++++|.+++      
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------  210 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------  210 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------
Confidence            344456665  66777754433321    2468999999999999884   44667789999999999998864      


Q ss_pred             hhhhhcCCcccCCCCCCeEecccc--ch-------HHHHHHhccccccEEEe
Q 042184           99 EAAAKLHPGFGSLTNLQKLCIIEA--DS-------EVLKELMKLRQLRKLSI  141 (261)
Q Consensus        99 ~~~~~l~~~~~~~~~L~~L~l~~~--~~-------~~~~~l~~~~~L~~L~l  141 (261)
                        ...+ ..+..+ +|+.|++.+|  ..       .....+..+|+|+.|+-
T Consensus       211 --~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          211 --EREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             --GGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             --chhh-hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence              2222 234444 8999999999  22       12356888899998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.09  E-value=4.1e-05  Score=63.18  Aligned_cols=124  Identities=14%  Similarity=0.123  Sum_probs=71.7

Q ss_pred             CCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184          110 SLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ  188 (261)
Q Consensus       110 ~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  188 (261)
                      .+..|+.+.+... .......+..+..|+.+.+..  .....-...+..+.+|+.+.+..+ +. ......+..+. +|+
T Consensus       215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~-~L~  289 (379)
T 4h09_A          215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS-NLT  289 (379)
T ss_dssp             TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT-TCC
T ss_pred             cccccceeeeccceeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccccc-ce-ecccccccccc-ccc
Confidence            3444555544433 111222344556666666644  222122234556777777777543 21 22224467777 888


Q ss_pred             eEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          189 RLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       189 ~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      .+.+.+ .++.++.. +..|.+|+.+.+..+ ++.....++.+|.+|+.+.+.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            888887 77766543 556888888888654 333334467788888888875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.82  E-value=5.6e-06  Score=61.53  Aligned_cols=110  Identities=17%  Similarity=0.150  Sum_probs=77.5

Q ss_pred             ccCcccccEEEecCC-Cce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCchh
Q 042184           28 VGSLLNLHYLSLRNK-KVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSI   96 (261)
Q Consensus        28 ~~~l~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~   96 (261)
                      +..-+.|+.|+++++ .+.     .+.+.+..-..|++|+|++|.+.     .+...+..-++|++|++++|.++..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~---  113 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE---  113 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH---
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH---
Confidence            344577888888875 665     24455666788888888888877     3445566677899999998887643   


Q ss_pred             hhhhhhhcCCcccCCCCCCeEecccc-----c----hHHHHHHhccccccEEEeec
Q 042184           97 AEEAAAKLHPGFGSLTNLQKLCIIEA-----D----SEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        97 ~~~~~~~l~~~~~~~~~L~~L~l~~~-----~----~~~~~~l~~~~~L~~L~l~~  143 (261)
                         ....+..++..-+.|+.|+++++     .    ..+.+.+..-+.|..|++..
T Consensus       114 ---Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          114 ---LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             ---HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ---HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence               45556677777778999988643     1    13455677778888888865

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.75  E-value=3.9e-05  Score=56.98  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             cccCCCCCCcEEeCCCC-ccc-----ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           49 KSIGNLLGLESLDLKNT-LVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        49 ~~l~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ..+..-+.|++|+++++ .+.     .+...+..-..|+.|++++|.++..      ....+...+..-+.|+.|++++|
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~------ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS------EARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH------HHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH------HHHHHHHHHhcCCccCeEecCCC
Confidence            34456788999999985 666     3455666778899999999988642      45556667777788999999998


Q ss_pred             --ch----HHHHHHhccccccEEEeecc-C-CCcc----chHHHHhCCCCCceEEEeeccc
Q 042184          123 --DS----EVLKELMKLRQLRKLSIRPQ-N-GNGK----DLCVLIANLENLENLIVLMKSK  171 (261)
Q Consensus       123 --~~----~~~~~l~~~~~L~~L~l~~~-~-~~~~----~~~~~l~~~~~L~~L~l~~n~~  171 (261)
                        ..    .+.+.+..-+.|+.|+++++ + ....    .+...+..-+.|.+|+++.+..
T Consensus       109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              22    24455666688999999752 1 2222    3556677778899999887643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.65  E-value=0.00027  Score=58.26  Aligned_cols=121  Identities=13%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184          106 PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP  184 (261)
Q Consensus       106 ~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  184 (261)
                      ..+..+..|+.+.+..+ .......+..+.+|+.+.+..  .....-...+..|.+|+.+.+..+.+..... ..+..+.
T Consensus       234 ~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTTTCT
T ss_pred             ccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehh-hhhcCCC
Confidence            45678888999988766 222334567788899888865  2222223467789999999998765543333 5688888


Q ss_pred             cccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          185 QYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       185 ~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                       +|+.+.+..+++.+.. .+..|.+|+.+.+..+ ++.....++.+++
T Consensus       311 -~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          311 -KLSSVTLPTALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             -TCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             -CCCEEEcCccccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence             9999999777776654 3667899999888654 3322223445554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.99  E-value=0.0012  Score=45.59  Aligned_cols=55  Identities=18%  Similarity=0.284  Sum_probs=41.1

Q ss_pred             ceeecCCCCCC--CCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccc
Q 042184           12 KVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVR   68 (261)
Q Consensus        12 ~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~   68 (261)
                      .+++.++++++  .+|..+.  .+|+.|+|++|.|+.+|.. +..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777777  7775443  4688888888888877654 567888888888888776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.26  E-value=0.0061  Score=42.02  Aligned_cols=40  Identities=15%  Similarity=0.095  Sum_probs=30.0

Q ss_pred             CCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCC
Q 042184          182 NPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       182 ~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~  221 (261)
                      .+|.+++.|+|++ .++.++.. +..+++|+.|+|++|.+.-
T Consensus        28 ~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            3555788888888 88877765 4457888888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 1   MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESL 60
           + +       ++ L++ +  ++ LP        L  L      +  +P+   N   L+ L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQN---LKQL 329

Query: 61  DLKNTLVRELPVEIRNLKKLR 81
            ++   +RE P    +++ LR
Sbjct: 330 HVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84
            H L L N  +  +P+   +   LESL      + ELP   ++LK L    
Sbjct: 39 QAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDN 87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 11  MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL 70
           +  L L    +  +   V SL  L  L   N KV  +  S+ NL  +  L   +  + +L
Sbjct: 309 LTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL 366

Query: 71  PVEIRNLKKLRYL 83
              + NL ++  L
Sbjct: 367 T-PLANLTRITQL 378

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 31  LLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYF 90
            +    L LR  K+ +I      L   +++D  +  +R+L      L++L+ L+V     
Sbjct: 17  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRI 75

Query: 91  TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKD 150
                  ++A   L     +  +L +L  ++  +      +K      +   P       
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-----LKSLTYLCILRNPVTNKKHY 130

Query: 151 LCVLIANLENLENL 164
              +I  +  +  L
Sbjct: 131 RLYVIYKVPQVRVL 144

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 32  LNLHYLSLRNKKVKIIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKLRYL 83
                    N+    +P+ +  L  L SL++  N L  E+P +  NL++    
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 37 LSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYF 90
          L      ++ +  ++  L   + L L    + ++   +  ++ LR L + +   
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.06

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=5.7e-25  Score=176.81  Aligned_cols=221  Identities=19%  Similarity=0.158  Sum_probs=120.9

Q ss_pred             ccceeecCCCCCC---CCcccccCcccccEEEecC-CCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccce
Q 042184           10 LMKVLDLEDAPVV---YLPEGVGSLLNLHYLSLRN-KKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYL   83 (261)
Q Consensus        10 ~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L   83 (261)
                      ++++|+++++.+.   .+|..++++++|++|++++ |.++ .+|..++++++|++|++++|.+. ..+..+..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            4666777776665   3566677777777777765 5565 66766777777777777777666 334456666677777


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccc-cEEEeeccCCCccchHHHHhCCCC
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQL-RKLSIRPQNGNGKDLCVLIANLEN  160 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~l~~~~~  160 (261)
                      +++.|.+..          .+|..+..++.++.+++++|  .+.++..+..+..+ +.+.+.+ +......+..+..+..
T Consensus       131 ~l~~N~~~~----------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~  199 (313)
T d1ogqa_         131 DFSYNALSG----------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNL  199 (313)
T ss_dssp             ECCSSEEES----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCC
T ss_pred             ccccccccc----------cCchhhccCcccceeecccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            777766543          45566666777777777666  33455555555544 4444443 2222223333333332


Q ss_pred             CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                       ..++++.+...+..+ ..+..++ +++.+++.+ .+...+..++.+++|+.|++++|.+++.+|..++++++|++|+++
T Consensus       200 -~~l~l~~~~~~~~~~-~~~~~~~-~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         200 -AFVDLSRNMLEGDAS-VLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             -SEEECCSSEEEECCG-GGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             -ccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence             234444444333333 2233344 555555554 444333334445555555555555555445555555555555555


Q ss_pred             -ccccc
Q 042184          240 -GTYNY  244 (261)
Q Consensus       240 -n~~~~  244 (261)
                       |.+++
T Consensus       277 ~N~l~g  282 (313)
T d1ogqa_         277 FNNLCG  282 (313)
T ss_dssp             SSEEEE
T ss_pred             CCcccc
Confidence             54443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=2.7e-24  Score=172.80  Aligned_cols=225  Identities=19%  Similarity=0.257  Sum_probs=186.7

Q ss_pred             CCccccCccccceeecCC-CCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhc
Q 042184            1 MNTSIANFKLMKVLDLED-APVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRN   76 (261)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~   76 (261)
                      +|.+++++++|++|++++ |.+. .+|..++++++|++|++++|++. ..+..+..+.+|+++++++|.+. .+|..+..
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            578999999999999997 6787 89999999999999999999998 55566888999999999999877 78889999


Q ss_pred             cccccceeccceecccCchhhhhhhhhcCCcccCCCCC-CeEecccc--chHHHHHHhccccccEEEeeccCCCccchHH
Q 042184           77 LKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNL-QKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCV  153 (261)
Q Consensus        77 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  153 (261)
                      +++++.+++++|.+++          .+|..+..+..+ +.+.++.+  .+..+..+..+.. ..+++.. +......+.
T Consensus       148 l~~L~~l~l~~n~l~~----------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~-~~~~~~~~~  215 (313)
T d1ogqa_         148 LPNLVGITFDGNRISG----------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSR-NMLEGDASV  215 (313)
T ss_dssp             CTTCCEEECCSSCCEE----------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCS-SEEEECCGG
T ss_pred             Ccccceeecccccccc----------cccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccc
Confidence            9999999999998764          577778887776 78888887  4444445555543 3566655 344455677


Q ss_pred             HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184          154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP  231 (261)
Q Consensus       154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  231 (261)
                      .+..+++++.+++++|.+.+..+  .+..++ +++.|++++ .++ .+|..++.+++|++|++++|++++.+| ..++++
T Consensus       216 ~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~-~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~  291 (313)
T d1ogqa_         216 LFGSDKNTQKIHLAKNSLAFDLG--KVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ  291 (313)
T ss_dssp             GCCTTSCCSEEECCSSEECCBGG--GCCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGG
T ss_pred             ccccccccccccccccccccccc--cccccc-ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCC
Confidence            78889999999999998876544  466777 999999999 888 899999999999999999999998766 357789


Q ss_pred             cccceEec-cc
Q 042184          232 NLLQLRLA-GT  241 (261)
Q Consensus       232 ~L~~L~l~-n~  241 (261)
                      +|+.++++ |+
T Consensus       292 ~L~~l~l~~N~  302 (313)
T d1ogqa_         292 RFDVSAYANNK  302 (313)
T ss_dssp             GSCGGGTCSSS
T ss_pred             CCCHHHhCCCc
Confidence            99999999 75

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.4e-21  Score=156.18  Aligned_cols=238  Identities=21%  Similarity=0.257  Sum_probs=171.2

Q ss_pred             cccceeecCCCCCCCCcc-cccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      +++++|++++|.++.+++ .+.++++|++|++++|.+..+ |..+..+++|++|++++|+++.+|...  .+.++.|...
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence            578899999998887775 678889999999999888855 556888899999999998888776532  3456666666


Q ss_pred             ceecccCchhh-------------h---hhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCcc
Q 042184           87 QYYFTSGSSIA-------------E---EAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGK  149 (261)
Q Consensus        87 ~~~~~~~~~~~-------------~---~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~  149 (261)
                      .|.+.+....+             .   ......+..+..+++|+.+.++++ ....+.  ..+++++.|++.+ +....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~L~~L~l~~-n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDG-NKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--SCCTTCSEEECTT-SCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc--ccCCccCEEECCC-CcCCC
Confidence            66554320000             0   011122345667788888888887 222222  2357888998887 33344


Q ss_pred             chHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhH---
Q 042184          150 DLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIR---  225 (261)
Q Consensus       150 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---  225 (261)
                      ..+..+..++.+++|++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.++.....   
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~-~~~~~l~-~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CChhHhhcccccccccccccccccccc-ccccccc-cceeeecccccccccccccccccCCCEEECCCCccCccChhhcc
Confidence            456778889999999999998876544 5678888 999999999 9999999899999999999999998864322   


Q ss_pred             ---HhccCCcccceEec-ccccceeeEEecCccc
Q 042184          226 ---VLHALPNLLQLRLA-GTYNYELFHFEAENWK  255 (261)
Q Consensus       226 ---~~~~~~~L~~L~l~-n~~~~~~~~~~~~~~~  255 (261)
                         .....++|+.|+++ |++..  +...+..|+
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~~--~~~~~~~f~  295 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQY--WEIQPSTFR  295 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCG--GGSCGGGGT
T ss_pred             CcchhcccCCCCEEECCCCcCcc--CcCCHhHhc
Confidence               23457899999999 88742  233445444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-21  Score=152.23  Aligned_cols=199  Identities=17%  Similarity=0.100  Sum_probs=163.0

Q ss_pred             cCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            6 ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         6 ~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      .+...+.+++.++++++.+|..+.  +++++|++++|.++.+| ..+..+++|++|++++|.++.++. +..+++|++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            455566778999999999987664  67999999999999776 468899999999999999997764 46799999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +++|+++           ..+..+..+++|+.|+++++  .......+..+.+++.|++.+ +......+..+..+++++
T Consensus        84 Ls~N~l~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          84 LSHNQLQ-----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             CCSSCCS-----------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCC
T ss_pred             ccccccc-----------ccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccch
Confidence            9999765           46778889999999999988  333444567788999999987 333333345566788999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE  221 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~  221 (261)
                      .+++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.+..
T Consensus       152 ~l~l~~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         152 KLSLANNNLTELPA-GLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EEECTTSCCSCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hcccccccccccCc-ccccccc-ccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            99999998876544 5678888 999999999 999999988899999999999998774

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-20  Score=147.14  Aligned_cols=216  Identities=18%  Similarity=0.167  Sum_probs=168.8

Q ss_pred             eeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceec
Q 042184           13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYF   90 (261)
Q Consensus        13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~   90 (261)
                      .++.++++++.+|..+.  +.+++|++++|.|+.+|. .+.++++|++|++++|.+..++ ..+..+..++.+....+..
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45667777888887654  568999999999997775 5889999999999999988543 4455677788877654432


Q ss_pred             ccCchhhhhhhhhc-CCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEe
Q 042184           91 TSGSSIAEEAAAKL-HPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL  167 (261)
Q Consensus        91 ~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  167 (261)
                                ...+ +..+..+++|+.|+++++  .......+...++|+.+++.+ +......+..+..+++|++|+++
T Consensus        93 ----------~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          93 ----------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             ----------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ----------cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccc
Confidence                      2233 556888999999999998  333445677788999999987 33333334567788999999999


Q ss_pred             ecccccccccccccCCccccceEEEec-cCcC-CCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          168 MKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK-LPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       168 ~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      +|.+....+ ..+..++ +|+.+++.+ .++. .|..+..+++|++|++++|.+.+..+..+..+++|++++++ |++.
T Consensus       162 ~N~l~~l~~-~~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         162 GNRISSVPE-RAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             SSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCcccccch-hhhcccc-ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            998875544 5678888 999999999 8874 46778889999999999999998888899999999999999 8775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.9e-20  Score=153.85  Aligned_cols=226  Identities=18%  Similarity=0.257  Sum_probs=141.9

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY   86 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~   86 (261)
                      .+.+|++|++++++++.+ +.+..+++|++|++++|+++.++. ++++++|++|++++|.+..++. +..+++|+.++++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccccccccc
Confidence            456777788877777765 345667778888888877776654 6777788888888777775543 6677777777777


Q ss_pred             ceecccCchh----------------------------------------------------------------------
Q 042184           87 QYYFTSGSSI----------------------------------------------------------------------   96 (261)
Q Consensus        87 ~~~~~~~~~~----------------------------------------------------------------------   96 (261)
                      ++..++....                                                                      
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            6655432000                                                                      


Q ss_pred             ------hhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeec
Q 042184           97 ------AEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMK  169 (261)
Q Consensus        97 ------~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  169 (261)
                            ....+..+ .....+++|+.|+++++ ... .+.+..+++|+.+++.++ ... ..+ .+..+++|++++++++
T Consensus       199 ~~~l~l~~n~i~~~-~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n-~l~-~~~-~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         199 LESLIATNNQISDI-TPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANN-QIS-NLA-PLSGLTKLTELKLGAN  273 (384)
T ss_dssp             CSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSS-CCC-CCG-GGTTCTTCSEEECCSS
T ss_pred             cceeeccCCccCCC-CcccccCCCCEEECCCCCCCC-cchhhcccccchhccccC-ccC-CCC-cccccccCCEeeccCc
Confidence                  00000000 11334566777777766 222 234566777888877762 222 222 3566677777777766


Q ss_pred             ccccccc-------------------cccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhcc
Q 042184          170 SKEEVLD-------------------LQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA  229 (261)
Q Consensus       170 ~~~~~~~-------------------~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  229 (261)
                      .+.+..+                   ...+..++ +++.|++++ .++.++. +..+++|++|++++|.+++.  ..+++
T Consensus       274 ~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~-~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l--~~l~~  349 (384)
T d2omza2         274 QISNISPLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLAN  349 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT-TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             ccCCCCccccccccccccccccccccccccchhc-ccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCC--hhHcC
Confidence            5442211                   11244455 788888888 7777653 66788888888888888753  25778


Q ss_pred             CCcccceEec-ccccc
Q 042184          230 LPNLLQLRLA-GTYNY  244 (261)
Q Consensus       230 ~~~L~~L~l~-n~~~~  244 (261)
                      +++|++|+++ |.+++
T Consensus       350 l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         350 LTNINWLSAGHNQISD  365 (384)
T ss_dssp             CTTCCEEECCSSCCCB
T ss_pred             CCCCCEEECCCCcCCC
Confidence            8888888888 77753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.9e-20  Score=144.28  Aligned_cols=196  Identities=16%  Similarity=0.120  Sum_probs=158.6

Q ss_pred             CcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184           30 SLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF  108 (261)
Q Consensus        30 ~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  108 (261)
                      ....+...+.+++.++.+|..+.  +++++|++++|.++.++ ..+..+++|++|++++|+++           .++ .+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-----------~l~-~~   73 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------KLQ-VD   73 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------EEE-CC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-----------ccc-cc
Confidence            44566677999999999997664  68999999999999776 46889999999999999775           333 35


Q ss_pred             cCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcccc
Q 042184          109 GSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYL  187 (261)
Q Consensus       109 ~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  187 (261)
                      +.+++|+.|++++| ....+..+..+++|+.|++.+ +......+..+..+.+++++++++|.+....+ ..+..++ ++
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~-~l  150 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTP-KL  150 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TC
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccceeeccccccccccccccccccccceecc-ccccccc-cc
Confidence            78899999999999 444455678889999999987 33333344556788899999999998875544 5577788 99


Q ss_pred             ceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          188 QRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       188 ~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      +.+++++ .++.++. .+..+++|++|++++|.++ .++..+..+++|+.|+++ |++.
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999 9997765 4677999999999999998 566677789999999999 8764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3.2e-19  Score=136.31  Aligned_cols=206  Identities=18%  Similarity=0.200  Sum_probs=154.6

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY   89 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   89 (261)
                      ++..++++.+.+.++ ..++.+.+|+.|++.+|.++.++ .+..+++|++|++++|.+..+++ +..+++|+++++++|.
T Consensus        20 ~~~~~~l~~~~~~d~-~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC
T ss_pred             HHHHHHhCCCCcCCc-CCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccc
Confidence            334456666666643 23467788999999999888774 57889999999999998886643 7888999999999886


Q ss_pred             cccCchhhhhhhhhcCCcccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeec
Q 042184           90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMK  169 (261)
Q Consensus        90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  169 (261)
                      ++           .+ ..+..+++|+.+.++++.......+...+.++.+.+.++ ....  ...+..+++|+++++++|
T Consensus        97 ~~-----------~i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2          97 LK-----------NV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN-QITN--ISPLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             CS-----------CC-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSS-CCCC--CGGGGGCTTCCEEECCSS
T ss_pred             cc-----------cc-ccccccccccccccccccccccchhccccchhhhhchhh-hhch--hhhhcccccccccccccc
Confidence            64           22 346788899999998872122233566778888888662 2221  123667889999999998


Q ss_pred             ccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEecc
Q 042184          170 SKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAG  240 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~n  240 (261)
                      ......+   +..++ +|+.|++++ .++.++. +..+++|++|++++|++++..  .++++++|+.|+++|
T Consensus       162 ~~~~~~~---l~~l~-~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         162 QVSDLTP---LANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCCGG---GTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccccchh---hcccc-cceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            7764433   67888 999999999 8888765 778999999999999998643  478999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=1.2e-18  Score=138.94  Aligned_cols=225  Identities=17%  Similarity=0.157  Sum_probs=155.8

Q ss_pred             ccceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccccc-chHhhccccccceeccc
Q 042184           10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~   87 (261)
                      ..+.++-++.+++.+|..+.  +++++|++++|+++.+|+ ++.++++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            56778888888999988664  689999999999998886 588999999999999999866 56788999999999999


Q ss_pred             eecccCc----------hhhhhhhhhcC-CcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCCccchH
Q 042184           88 YYFTSGS----------SIAEEAAAKLH-PGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGNGKDLC  152 (261)
Q Consensus        88 ~~~~~~~----------~~~~~~~~~l~-~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  152 (261)
                      |+++...          ....+.+..++ ..+.....++.+....+    .......+..+++|+.+++.++  ....++
T Consensus        89 n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n--~l~~l~  166 (305)
T d1xkua_          89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIP  166 (305)
T ss_dssp             SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS--CCCSCC
T ss_pred             CccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC--CccccC
Confidence            9775310          00000000000 01222333344444333    1122234555666777776652  111222


Q ss_pred             HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccC
Q 042184          153 VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHAL  230 (261)
Q Consensus       153 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (261)
                      .  ..++++++|++++|......+ ..+..++ .+++|++++ .++.+ +.++..+++|++|++++|.++. ++..+.++
T Consensus       167 ~--~~~~~L~~L~l~~n~~~~~~~-~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l  241 (305)
T d1xkua_         167 Q--GLPPSLTELHLDGNKITKVDA-ASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH  241 (305)
T ss_dssp             S--SCCTTCSEEECTTSCCCEECT-GGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTC
T ss_pred             c--ccCCccCEEECCCCcCCCCCh-hHhhccc-cccccccccccccccccccccccccceeeecccccccc-cccccccc
Confidence            2  135678888888876665544 4577777 899999998 88855 4556779999999999999885 45678899


Q ss_pred             CcccceEec-cccc
Q 042184          231 PNLLQLRLA-GTYN  243 (261)
Q Consensus       231 ~~L~~L~l~-n~~~  243 (261)
                      ++|++|+++ |.++
T Consensus       242 ~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         242 KYIQVVYLHNNNIS  255 (305)
T ss_dssp             SSCCEEECCSSCCC
T ss_pred             cCCCEEECCCCccC
Confidence            999999999 8775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-18  Score=138.06  Aligned_cols=201  Identities=20%  Similarity=0.208  Sum_probs=161.3

Q ss_pred             cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCC-CCccccc-chHhhcccccccee
Q 042184            9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLK-NTLVREL-PVEIRNLKKLRYLM   84 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~-~~~~~~~-~~~~~~l~~L~~L~   84 (261)
                      +.+++|++++|.|+.+| ..+.++++|++|+++++.+..++ ..+..+..++.+... .+.+..+ +..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            46899999999999777 46889999999999999998444 446678889998765 4456655 55688899999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE  162 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  162 (261)
                      +++|.+..          ..+..+..+++|+.++++++  ....+..+..+++|+.|++.+ +......+..+..+++|+
T Consensus       112 l~~n~~~~----------~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         112 LDRCGLQE----------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             CTTSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred             cCCccccc----------ccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhccccccc
Confidence            99997643          23456777889999999998  333345678889999999988 344444456788899999


Q ss_pred             eEEEeecccccccccccccCCccccceEEEec-cCcCCC-ccccCCCcccEEEeccCCCCCC
Q 042184          163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLP-DWIFKPKNVIRLGLDLSGLTED  222 (261)
Q Consensus       163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~-~~~~~~~~L~~L~l~~~~~~~~  222 (261)
                      ++++++|.+.+..+ ..+..++ +++.|++++ .+..++ ..++.+++|++|++++|.+...
T Consensus       181 ~l~l~~N~l~~i~~-~~f~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         181 RLLLHQNRVAHVHP-HAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhhhhccccccCh-hHhhhhh-hcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            99999998886655 5688899 999999999 888666 4577899999999999988753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.9e-18  Score=130.90  Aligned_cols=189  Identities=22%  Similarity=0.280  Sum_probs=150.9

Q ss_pred             ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184            5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM   84 (261)
Q Consensus         5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~   84 (261)
                      ++++.+|++|++.+|+++.++ .+..+++|++|++++|.++.++. +..+++++++++++|.++.++ .+..+++|+.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccc
Confidence            456889999999999999874 58899999999999999986654 789999999999999888765 478899999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL  164 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  164 (261)
                      ++.+...+            ...+...+.++.+.++.+.......+..+++|+.|.+.++ ... .. ..+.++++|++|
T Consensus       114 l~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~-~~-~~l~~l~~L~~L  178 (227)
T d1h6ua2         114 LTSTQITD------------VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVS-DL-TPLANLSKLTTL  178 (227)
T ss_dssp             CTTSCCCC------------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCC-CC-GGGTTCTTCCEE
T ss_pred             cccccccc------------cchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccc-cc-hhhcccccceec
Confidence            99986542            2345667788999888771111223677889999999872 222 22 247889999999


Q ss_pred             EEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEecc
Q 042184          165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDL  216 (261)
Q Consensus       165 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~  216 (261)
                      ++++|.+.+.   ..+..++ +|++|++++ .++.++. +..+++|+.|++++
T Consensus       179 ~Ls~n~l~~l---~~l~~l~-~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         179 KADDNKISDI---SPLASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             ECCSSCCCCC---GGGGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             ccCCCccCCC---hhhcCCC-CCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            9999987653   2377888 999999999 9998875 78899999999974

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.8e-18  Score=133.12  Aligned_cols=194  Identities=17%  Similarity=0.165  Sum_probs=118.5

Q ss_pred             CcccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceecccee-cccCchhhhhhhhhcC
Q 042184           30 SLLNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYY-FTSGSSIAEEAAAKLH  105 (261)
Q Consensus        30 ~l~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~  105 (261)
                      ...+|++|+++++.++  .+...+..+++|++|+++++.+. ..+..+..+++|++|++++|. ++.         ..+.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd---------~~l~  114 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------FALQ  114 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------HHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc---------cccc
Confidence            4467788888877765  34445667788888888887766 445566777788888887753 321         1222


Q ss_pred             CcccCCCCCCeEecccc---c-hHHHHHHhc-cccccEEEeecc-CC-CccchHHHHhCCCCCceEEEeecccccccccc
Q 042184          106 PGFGSLTNLQKLCIIEA---D-SEVLKELMK-LRQLRKLSIRPQ-NG-NGKDLCVLIANLENLENLIVLMKSKEEVLDLQ  178 (261)
Q Consensus       106 ~~~~~~~~L~~L~l~~~---~-~~~~~~l~~-~~~L~~L~l~~~-~~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  178 (261)
                      .....+++|+.|++++|   . ......+.. ++.|+.|++.++ .. ....+......+++|++|++++|...+...+.
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            33445677888888776   2 223333333 467888887762 12 22334444566778888888776544333334


Q ss_pred             cccCCccccceEEEec--cCc-CCCccccCCCcccEEEeccCCCCCChhHHh-ccCCccc
Q 042184          179 SLSNPPQYLQRLYFKG--DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVL-HALPNLL  234 (261)
Q Consensus       179 ~~~~~~~~L~~L~l~~--~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  234 (261)
                      .+..++ +|++|++++  .++ .-...+..+++|+.|++++| +++.....+ ..+|+|+
T Consensus       195 ~l~~~~-~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         195 EFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             GGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             hhcccC-cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            566677 888888876  455 22234566788888888877 444433333 4466554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.1e-18  Score=133.87  Aligned_cols=208  Identities=16%  Similarity=0.108  Sum_probs=149.3

Q ss_pred             CccccceeecCCCCCC--CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCc-cc--ccchHhhccccc
Q 042184            7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTL-VR--ELPVEIRNLKKL   80 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L   80 (261)
                      ...+|++|+++++.+.  .+...+..+++|++|++.++.++ ..+..++.+++|++|++++|. ++  .+......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4568999999999877  45566788999999999999887 666778889999999999964 65  334445678999


Q ss_pred             cceecccee-cccCchhhhhhhhhcCCcc-cCCCCCCeEecccc----c-hHHHHHHhccccccEEEeeccCCCccchHH
Q 042184           81 RYLMVYQYY-FTSGSSIAEEAAAKLHPGF-GSLTNLQKLCIIEA----D-SEVLKELMKLRQLRKLSIRPQNGNGKDLCV  153 (261)
Q Consensus        81 ~~L~l~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~----~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  153 (261)
                      ++|++++|. ++.         ..+...+ ..+++|+.|+++++    . ..+......+++|++|+++++....+....
T Consensus       124 ~~L~ls~c~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         124 DELNLSWCFDFTE---------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             CEEECCCCTTCCH---------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             ccccccccccccc---------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            999999974 321         1122222 23578999999875    2 334555678899999999885556666777


Q ss_pred             HHhCCCCCceEEEeecccccccccccccCCccccceEEEeccCc--CCCccccCCCcccEEEeccCCCCCChhHHh
Q 042184          154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMK--KLPDWIFKPKNVIRLGLDLSGLTEDPIRVL  227 (261)
Q Consensus       154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  227 (261)
                      .+..+++|++|++++|...+...+..+..+| +|+.|++.+.++  .+......+|+|+   +..+.+++..+..+
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~  266 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTI  266 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCC-CCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCcc
Confidence            8889999999999997544444445577889 999999987222  3333233466654   55666665433333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.3e-17  Score=123.47  Aligned_cols=179  Identities=21%  Similarity=0.272  Sum_probs=123.4

Q ss_pred             eecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccC
Q 042184           14 LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSG   93 (261)
Q Consensus        14 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   93 (261)
                      ..+....+.+... ...+.+|+.|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+++  
T Consensus        29 ~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~--  103 (210)
T d1h6ta2          29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK--  103 (210)
T ss_dssp             HHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--
T ss_pred             HHhCcCccCCccC-HHHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccc--
Confidence            3444444442211 134677888888888877654 36778888888888888776653 567888888888888664  


Q ss_pred             chhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184           94 SSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                               .++ .+..+++|+.|+++++ ... ...+..+++++.+++.++ ... . +..+..+++|+++++++|.+.
T Consensus       104 ---------~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n-~l~-~-~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         104 ---------DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNN-KIT-D-ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             ---------CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCC-C-CGGGGGCTTCSEEECCSSCCC
T ss_pred             ---------ccc-cccccccccccccccccccc-cccccccccccccccccc-ccc-c-ccccccccccccccccccccc
Confidence                     233 4677788888888877 222 234667788888888762 221 2 234567788999999888776


Q ss_pred             cccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEecc
Q 042184          173 EVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDL  216 (261)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~  216 (261)
                      +..   .+..++ +|++|++++ .++.++ .+..+++|++|++++
T Consensus       170 ~i~---~l~~l~-~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         170 DIV---PLAGLT-KLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCG---GGTTCT-TCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccc---cccCCC-CCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            432   367788 899999988 888876 477888999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.4e-17  Score=121.22  Aligned_cols=177  Identities=19%  Similarity=0.258  Sum_probs=115.6

Q ss_pred             eeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceeccc
Q 042184           13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS   92 (261)
Q Consensus        13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   92 (261)
                      ...+..+.+.+.+ ....+.+++.|+++++.++.+. .++.+++|++|++++|+++.+++ +..+++|++|++++|.+. 
T Consensus        22 ~~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~-   97 (199)
T d2omxa2          22 KTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-   97 (199)
T ss_dssp             HHHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred             HHHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccc-
Confidence            3445555555322 1235677777888877777653 46677788888888877776554 677778888888777543 


Q ss_pred             CchhhhhhhhhcCCcccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184           93 GSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE  172 (261)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  172 (261)
                                .++ .+..+++|+.++++++.......+..+++|+.++++++ . ...+ ..+..+++++.|++.+|.+.
T Consensus        98 ----------~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~-l~~~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2          98 ----------DIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN-T-ISDI-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             ----------CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-C-CCCC-GGGTTCTTCSEEECCSSCCC
T ss_pred             ----------ccc-ccccccccccccccccccccccccchhhhhHHhhhhhh-h-hccc-cccccccccccccccccccc
Confidence                      222 36677778888887771111223566778888888762 2 2222 24677788888888888766


Q ss_pred             cccccccccCCccccceEEEec-cCcCCCccccCCCcccEE
Q 042184          173 EVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRL  212 (261)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L  212 (261)
                      +..   .+..++ +|++|++++ .++.++ .+..+++|++|
T Consensus       164 ~l~---~l~~l~-~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         164 DLK---PLANLT-TLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCG---GGTTCT-TCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCc---cccCCC-CCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            432   366777 888888888 777765 36677777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.3e-16  Score=129.21  Aligned_cols=190  Identities=23%  Similarity=0.308  Sum_probs=148.5

Q ss_pred             ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcC
Q 042184           26 EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH  105 (261)
Q Consensus        26 ~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  105 (261)
                      .....+++++.+++++|.++.++. ...+++|++|++++|.++.++ .+..+++|+.+++++|.+++           ++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-----------~~  257 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-----------LA  257 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-----------CG
T ss_pred             cccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCC-----------CC
Confidence            445677889999999998886544 456788999999999888764 57788999999999987653           22


Q ss_pred             CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184          106 PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP  184 (261)
Q Consensus       106 ~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  184 (261)
                       .+..+++|+.++++++ .... ..+..++.++.+.+..+ . ... ...+..+++++++++++|.+.+..+   +..++
T Consensus       258 -~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~l~~l~~~~n-~-l~~-~~~~~~~~~l~~L~ls~n~l~~l~~---l~~l~  329 (384)
T d2omza2         258 -PLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNEN-Q-LED-ISPISNLKNLTYLTLYFNNISDISP---VSSLT  329 (384)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSS-C-CSC-CGGGGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred             -cccccccCCEeeccCcccCCC-Ccccccccccccccccc-c-ccc-ccccchhcccCeEECCCCCCCCCcc---cccCC
Confidence             3677889999999887 2222 23667788888888762 2 222 2347788999999999998875433   67788


Q ss_pred             cccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184          185 QYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G  240 (261)
Q Consensus       185 ~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n  240 (261)
                       +|++|++++ .++.++ .+..+++|++|++++|++++..+  +.++++|+.|+++ |
T Consensus       330 -~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 -KLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -TCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -CCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             999999999 898876 47889999999999999997543  7899999999998 5

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.4e-16  Score=119.99  Aligned_cols=177  Identities=21%  Similarity=0.273  Sum_probs=130.5

Q ss_pred             EEecCCCce-ecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCC
Q 042184           37 LSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQ  115 (261)
Q Consensus        37 L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~  115 (261)
                      ..+..+.++ .++.  ..+.+|++|++++|.+..++ ++..+++|++|++++|++++           ++ .++.+++|+
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~-----------l~-~~~~l~~L~   93 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-----------IK-PLANLKNLG   93 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-----------CG-GGTTCTTCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccC-----------cc-ccccCcccc
Confidence            345555554 2221  34678899999999888765 47889999999999997653           33 357788999


Q ss_pred             eEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec
Q 042184          116 KLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG  194 (261)
Q Consensus       116 ~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  194 (261)
                      .|++++| ...++ .+..+++|+.+++.++.  ...+ ..+..++.++.+++++|.+.+..   .+..++ +|+.+++++
T Consensus        94 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~--~~~~-~~l~~l~~l~~l~~~~n~l~~~~---~~~~l~-~L~~l~l~~  165 (210)
T d1h6ta2          94 WLFLDENKVKDLS-SLKDLKKLKSLSLEHNG--ISDI-NGLVHLPQLESLYLGNNKITDIT---VLSRLT-KLDTLSLED  165 (210)
T ss_dssp             EEECCSSCCCCGG-GGTTCTTCCEEECTTSC--CCCC-GGGGGCTTCCEEECCSSCCCCCG---GGGGCT-TCSEEECCS
T ss_pred             ccccccccccccc-ccccccccccccccccc--cccc-ccccccccccccccccccccccc---cccccc-ccccccccc
Confidence            9999888 33333 47788899999987722  2222 35778888999999988775432   356677 899999998


Q ss_pred             -cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          195 -DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       195 -~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                       .++.++. +..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus       166 n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         166 NQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             cccccccc-ccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence             8887764 77889999999999988753  357889999999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.8e-17  Score=121.50  Aligned_cols=180  Identities=19%  Similarity=0.220  Sum_probs=135.2

Q ss_pred             ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184           32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL  111 (261)
Q Consensus        32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (261)
                      .+.....++.+.++..+. ...+.++++|+++++.+..+. ++..+++|++|++++|++++           ++ .++.+
T Consensus        18 ~~~i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~-----------~~-~l~~l   83 (199)
T d2omxa2          18 AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-----------IT-PLKNL   83 (199)
T ss_dssp             HHHHHHHTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-----------CG-GGTTC
T ss_pred             HHHHHHHhCCCCCCCccC-HHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccC-----------cc-cccCC
Confidence            344445566666653322 245789999999999988764 57889999999999997753           33 37889


Q ss_pred             CCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceE
Q 042184          112 TNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRL  190 (261)
Q Consensus       112 ~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  190 (261)
                      ++|+.|++++| ...++ .+..+++|+.++++++....   ...+..+++|+.+++++|.+...   ..+..++ +++.|
T Consensus        84 ~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~-~L~~L  155 (199)
T d2omxa2          84 TKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDI---SALSGLT-SLQQL  155 (199)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCCCC---GGGTTCT-TCSEE
T ss_pred             ccccccccccccccccc-cccccccccccccccccccc---ccccchhhhhHHhhhhhhhhccc---ccccccc-ccccc
Confidence            99999999998 32222 37788999999998722221   23467889999999999876533   3467788 99999


Q ss_pred             EEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccce
Q 042184          191 YFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQL  236 (261)
Q Consensus       191 ~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  236 (261)
                      ++.+ .++.++. ++.+++|++|++++|++++.  +.++++++|+.|
T Consensus       156 ~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccccccccCCcc-ccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            9999 8888764 78899999999999998863  357788888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=109.06  Aligned_cols=130  Identities=18%  Similarity=0.221  Sum_probs=104.3

Q ss_pred             ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184            3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR   81 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~   81 (261)
                      +.+.++.++++|++++|+|+.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++.. +..+++|+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            4567888999999999999988876778999999999999999774 578999999999999999977654 56799999


Q ss_pred             ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH----HHHHHhccccccEEEee
Q 042184           82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE----VLKELMKLRQLRKLSIR  142 (261)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~~~l~~~~~L~~L~l~  142 (261)
                      +|++++|+++.        ... ...+..+++|+.+++++| ...    ....+..+|+|+.|+-.
T Consensus        91 ~L~L~~N~i~~--------~~~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVE--------LGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCC--------GGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccc--------ccc-ccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            99999998752        222 245778899999999998 221    23457778888887643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.1e-15  Score=104.95  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=90.8

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecc
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFT   91 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   91 (261)
                      |+|++++|+++.++. +..+++|++|++++|.++.+|+.++.+++|++|++++|.++.++ .+..+++|+++++++|+++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            678999999997764 78889999999999999998888889999999999999998876 4888999999999999775


Q ss_pred             cCchhhhhhhhhcCCcccCCCCCCeEecccc-c----hHHHHHHhccccccEE
Q 042184           92 SGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-D----SEVLKELMKLRQLRKL  139 (261)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~----~~~~~~l~~~~~L~~L  139 (261)
                      .        . .-...+..+++|+.+++++| .    .........+|+++.+
T Consensus        79 ~--------~-~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 Q--------S-AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             S--------S-STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             C--------C-CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            2        1 11245778888999999887 1    1122334455666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=120.45  Aligned_cols=212  Identities=18%  Similarity=0.178  Sum_probs=145.3

Q ss_pred             ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc-cc-chHhhccccccceeccce
Q 042184           12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR-EL-PVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~-~~-~~~~~~l~~L~~L~l~~~   88 (261)
                      +.++.++.+++.+|..+.  +++++|++++|.++.+|. .+.++++|++|++++|.+. .+ +..+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            577788888888887553  579999999999997776 4788999999999999876 33 335677888999887653


Q ss_pred             -ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeec--cCCCccchHHHHhCC-CCCce
Q 042184           89 -YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP--QNGNGKDLCVLIANL-ENLEN  163 (261)
Q Consensus        89 -~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~--~~~~~~~~~~~l~~~-~~L~~  163 (261)
                       .++          ...+..+..+++|+.++++++ .... .....+.+++.+....  +..........+..+ ..+..
T Consensus        89 n~l~----------~~~~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          89 NNLL----------YINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  157 (242)
T ss_dssp             TTCC----------EECTTSEECCTTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             cccc----------ccccccccccccccccccchhhhccc-cccccccccccccccccccccccccccccccccccccee
Confidence             332          234466788999999999888 2221 1233444455444322  122222223334444 47888


Q ss_pred             EEEeecccccccccccccCCccccceEEE-ec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184          164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYF-KG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA  239 (261)
Q Consensus       164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l-~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  239 (261)
                      +++++|.+..... ..+ ..+ +++++.. .+ .++.+|.. +..+++|+.|++++|.++......+.++++|+.+++.
T Consensus       158 L~l~~n~l~~i~~-~~~-~~~-~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         158 LWLNKNGIQEIHN-CAF-NGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECCSSCCCEECT-TTT-TTC-CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             eeccccccccccc-ccc-cch-hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            9999887764433 223 344 5666654 55 78888765 5679999999999999987555667788888888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=4.5e-16  Score=125.93  Aligned_cols=237  Identities=16%  Similarity=0.144  Sum_probs=165.6

Q ss_pred             ccccCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCce----e-------cccccCCCCCCcEEeCCCCc
Q 042184            3 TSIANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVK----I-------IPKSIGNLLGLESLDLKNTL   66 (261)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~----~-------~~~~l~~l~~L~~L~l~~~~   66 (261)
                      .++.+...+++|++++|.+.     .+...+...++|+.++++++...    .       +...+..+++|++|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34667889999999999876     23355677899999999876533    1       22345678999999999998


Q ss_pred             cc-----ccchHhhccccccceeccceecccCchhhhhhhhhcC---------CcccCCCCCCeEecccc--c----hHH
Q 042184           67 VR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH---------PGFGSLTNLQKLCIIEA--D----SEV  126 (261)
Q Consensus        67 ~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~L~~L~l~~~--~----~~~  126 (261)
                      +.     .+...+..+++|++|++++|.++..      ....+.         ......+.|+.+.++++  .    ..+
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~------~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             cccccccchhhhhcccccchheeccccccccc------ccccccccccccccccccccCcccceeecccccccccccccc
Confidence            76     2445566789999999999976431      111111         12245678999999887  2    235


Q ss_pred             HHHHhccccccEEEeeccCCCccc----hHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-
Q 042184          127 LKELMKLRQLRKLSIRPQNGNGKD----LCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-  197 (261)
Q Consensus       127 ~~~l~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-  197 (261)
                      ...+...+.++.|++.++......    +...+..+++|++|++++|.+.....   ...+..++ +|++|++++ .++ 
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc-cchhhhhhcCccCc
Confidence            556778899999999873322221    23346778899999999997653211   13466778 999999998 776 


Q ss_pred             ----CCCccccC--CCcccEEEeccCCCCCChh----HHhc-cCCcccceEec-cccccee
Q 042184          198 ----KLPDWIFK--PKNVIRLGLDLSGLTEDPI----RVLH-ALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       198 ----~l~~~~~~--~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~-n~~~~~~  246 (261)
                          .+...+..  .+.|++|++++|.+++...    ..+. ++++|++|+++ |.+..+.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence                23333333  4679999999999887433    3343 68899999999 9886543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=111.35  Aligned_cols=196  Identities=16%  Similarity=0.127  Sum_probs=139.1

Q ss_pred             cEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhc-CCcccCCC
Q 042184           35 HYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKL-HPGFGSLT  112 (261)
Q Consensus        35 ~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~  112 (261)
                      +.++.++..++.+|..+.  .++++|++++|.++.++. .+.++++|++|++++|.+..          .+ +..+..++
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~----------~i~~~~f~~l~   78 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----------VIEADVFSNLP   78 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC----------EECSSSEESCT
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc----------eeecccccccc
Confidence            678888888888887653  589999999999997766 57889999999999996542          22 34577889


Q ss_pred             CCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccce
Q 042184          113 NLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR  189 (261)
Q Consensus       113 ~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  189 (261)
                      .++.+.+..+   ....+..+..+++|+++++.++..........+.....+..+...++.+... +...+..++..++.
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i-~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVI  157 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE-CTTSSTTSBSSCEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc-ccccccccccccee
Confidence            9999988654   3444556788999999999883221111112233344444444444444322 22345555547888


Q ss_pred             EEEec-cCcCCCccccCCCcccEEE-eccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          190 LYFKG-DMKKLPDWIFKPKNVIRLG-LDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       190 L~l~~-~l~~l~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      |++.+ .++.++.......++.++. +.+|.++......+.++++|++|+++ |.++
T Consensus       158 L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             eecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            99988 8988887777777777775 46677876666678899999999999 8875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2.6e-14  Score=97.88  Aligned_cols=87  Identities=20%  Similarity=0.246  Sum_probs=79.1

Q ss_pred             cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc--hHhhcccccc
Q 042184            4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP--VEIRNLKKLR   81 (261)
Q Consensus         4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~   81 (261)
                      .+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|. +..+++|++|++++|.+..++  ..+..+++|+
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            4789999999999999999999889999999999999999998864 889999999999999998554  4678899999


Q ss_pred             ceeccceecc
Q 042184           82 YLMVYQYYFT   91 (261)
Q Consensus        82 ~L~l~~~~~~   91 (261)
                      ++++++|.++
T Consensus        94 ~L~l~~N~i~  103 (124)
T d1dcea3          94 LLNLQGNSLC  103 (124)
T ss_dssp             EEECTTSGGG
T ss_pred             EEECCCCcCC
Confidence            9999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.8e-15  Score=122.31  Aligned_cols=87  Identities=18%  Similarity=0.086  Sum_probs=55.2

Q ss_pred             CCCceEEEeecccccccc--c-ccccCCccccceEEEec-cCc-----CCCcccc-CCCcccEEEeccCCCCCChh----
Q 042184          159 ENLENLIVLMKSKEEVLD--L-QSLSNPPQYLQRLYFKG-DMK-----KLPDWIF-KPKNVIRLGLDLSGLTEDPI----  224 (261)
Q Consensus       159 ~~L~~L~l~~n~~~~~~~--~-~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~-~~~~L~~L~l~~~~~~~~~~----  224 (261)
                      ..|+.++++++.+.....  + ..+...+ +|++|++++ .++     .++..+. ..+.|++|++++|.+++...    
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhccccccccc-chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            457777777665543211  0 1123344 788888888 665     3444443 35678888998888876432    


Q ss_pred             HHhccCCcccceEec-cccccee
Q 042184          225 RVLHALPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       225 ~~~~~~~~L~~L~l~-n~~~~~~  246 (261)
                      ..+..+++|++|+++ |.++++.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHhcCCCCCEEECCCCcCCHHH
Confidence            345667889999988 8887654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=1.6e-14  Score=116.67  Aligned_cols=217  Identities=15%  Similarity=0.096  Sum_probs=155.9

Q ss_pred             CCcccccCcccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc----c-------cchHhhccccccceecc
Q 042184           23 YLPEGVGSLLNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR----E-------LPVEIRNLKKLRYLMVY   86 (261)
Q Consensus        23 ~~~~~~~~l~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~----~-------~~~~~~~l~~L~~L~l~   86 (261)
                      .+...+.....++.|++++|.+.     .+...+...++|+.++++++...    .       +...+..+++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            45556677899999999999875     34455678899999999977543    1       22335568899999999


Q ss_pred             ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHH---------HhccccccEEEeeccCCC---c
Q 042184           87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKE---------LMKLRQLRKLSIRPQNGN---G  148 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~---------l~~~~~L~~L~l~~~~~~---~  148 (261)
                      +|.++..      ....+...+..+++|+.|++++|  ..    .+...         ....+.|+.+.+.++...   .
T Consensus       102 ~n~i~~~------~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         102 DNAFGPT------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             SCCCCTT------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccc------cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence            9988653      45556667778899999999988  11    11111         234568889988772222   2


Q ss_pred             cchHHHHhCCCCCceEEEeeccccccc----ccccccCCccccceEEEec-cCc-----CCCccccCCCcccEEEeccCC
Q 042184          149 KDLCVLIANLENLENLIVLMKSKEEVL----DLQSLSNPPQYLQRLYFKG-DMK-----KLPDWIFKPKNVIRLGLDLSG  218 (261)
Q Consensus       149 ~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~~~~~L~~L~l~~~~  218 (261)
                      ..+...+..++.++.+++++|.+....    -...+..++ +|+.|++++ .++     .+...+..+++|++|++++|.
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchh-hhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            234556778899999999999775421    113366677 999999998 765     355567789999999999999


Q ss_pred             CCCChhHHh----cc--CCcccceEec-cccccee
Q 042184          219 LTEDPIRVL----HA--LPNLLQLRLA-GTYNYEL  246 (261)
Q Consensus       219 ~~~~~~~~~----~~--~~~L~~L~l~-n~~~~~~  246 (261)
                      +++.....+    ..  .+.|++|+++ |.++.+.
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            987544433    33  4689999999 9887654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=3.6e-13  Score=108.37  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             ccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          186 YLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       186 ~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      +|++|++++ .++.+|..   +++|+.|++++|.++. ++   ..+++|++|+++ |.++
T Consensus       285 ~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~-l~---~~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         285 SLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE-VP---ELPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCccCccccc---cCCCCEEECCCCcCCc-cc---cccCCCCEEECcCCcCC
Confidence            788888888 77777753   5678888888888774 22   135688888888 8775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.5e-14  Score=105.83  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=83.0

Q ss_pred             cceeecCCCCCCCCcccccCcccccEEEecCCCce-ecc-cccCCCCCCcEEeCCCCcccc-cchHhhccccccceeccc
Q 042184           11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK-IIP-KSIGNLLGLESLDLKNTLVRE-LPVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~-~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~   87 (261)
                      .++++.++++++.+|..+.  +++++|++++|.|+ .++ ..+..+++|++|++++|.+.. .+..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4577888888888887654  67888888888886 343 446778888888888888774 445667788888888888


Q ss_pred             eecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeec
Q 042184           88 YYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~  143 (261)
                      |+++           .++ ..|..+++|+.|++++|  ....+..+..+++|+++++.+
T Consensus        88 N~l~-----------~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          88 NKIK-----------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCCC-----------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cccc-----------ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            8664           333 45677788888887777  222233355556666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.7e-14  Score=101.29  Aligned_cols=104  Identities=23%  Similarity=0.309  Sum_probs=71.0

Q ss_pred             ccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184           28 VGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG  107 (261)
Q Consensus        28 ~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~  107 (261)
                      +.++.+++.|++++|.|+.++.....+++|++|++++|.+..++ .+..+++|++|++++|+++           .++..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~-----------~l~~~   81 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRIC-----------RIGEG   81 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCC-----------EECSC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccccc-----------CCCcc
Confidence            44667788888888888877765667888888888888888664 4677888888888888654           34433


Q ss_pred             -ccCCCCCCeEecccc-chH--HHHHHhccccccEEEeec
Q 042184          108 -FGSLTNLQKLCIIEA-DSE--VLKELMKLRQLRKLSIRP  143 (261)
Q Consensus       108 -~~~~~~L~~L~l~~~-~~~--~~~~l~~~~~L~~L~l~~  143 (261)
                       +..+++|+.|++++| ...  ....+..+++|+.+++.+
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCC
Confidence             345677777777766 211  123455556666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=3e-15  Score=111.31  Aligned_cols=142  Identities=20%  Similarity=0.248  Sum_probs=104.3

Q ss_pred             ccceeecCCC--CCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccc
Q 042184           10 LMKVLDLEDA--PVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQ   87 (261)
Q Consensus        10 ~L~~L~l~~~--~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~   87 (261)
                      .++.+++.+.  .+..++..++.+++|+.|++++|.|+.++ .+..+++|++|++++|.++.++.....+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            3455566554  35567778888999999999999888775 47788999999999999888876666677899999999


Q ss_pred             eecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH--HHHHHhccccccEEEeeccCCCcc------c----hHHH
Q 042184           88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE--VLKELMKLRQLRKLSIRPQNGNGK------D----LCVL  154 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~------~----~~~~  154 (261)
                      |.++.           + +.+..+++|+.|++++| ...  ....+..+++|+.|+++++ ....      .    ....
T Consensus       103 N~i~~-----------l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~v  169 (198)
T d1m9la_         103 NQIAS-----------L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             EECCC-----------H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHH
T ss_pred             ccccc-----------c-ccccccccccccccccchhccccccccccCCCccceeecCCC-ccccCcccccchhhHHHHH
Confidence            97752           2 23667788999999988 332  3356888999999999872 1111      0    1123


Q ss_pred             HhCCCCCceEE
Q 042184          155 IANLENLENLI  165 (261)
Q Consensus       155 l~~~~~L~~L~  165 (261)
                      +..+++|+.||
T Consensus       170 i~~lp~L~~LD  180 (198)
T d1m9la_         170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCCEES
T ss_pred             HHHCCCcCEeC
Confidence            67788999886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1.1e-12  Score=96.73  Aligned_cols=104  Identities=20%  Similarity=0.271  Sum_probs=88.4

Q ss_pred             cccceeecCCCCCC-CC-cccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCcccccch-Hhhcccccccee
Q 042184            9 KLMKVLDLEDAPVV-YL-PEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLM   84 (261)
Q Consensus         9 ~~L~~L~l~~~~l~-~~-~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~   84 (261)
                      +++++|++++|.|+ .+ +..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+..++. .+.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            58999999999997 34 356788999999999999998 455678889999999999999997654 578999999999


Q ss_pred             ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      +++|+++.          --+..+..+++|+.+++++|
T Consensus       109 L~~N~l~~----------i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         109 LYDNQISC----------VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCSSCCCE----------ECTTSSTTCTTCCEEECTTC
T ss_pred             cCCccccc----------cCHHHhcCCccccccccccc
Confidence            99997753          23456789999999999998

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.36  E-value=1.6e-12  Score=104.47  Aligned_cols=210  Identities=20%  Similarity=0.151  Sum_probs=128.1

Q ss_pred             cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184            9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY   88 (261)
Q Consensus         9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   88 (261)
                      .++++|++++++++.+|+.   .++|++|++++|+++++|..   +.+|+.|++++|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            4688999999999888864   46789999999999988864   46788888888887755431   135888999888


Q ss_pred             ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-------------------HHHHhccccccEEEeeccCCCc
Q 042184           89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-------------------LKELMKLRQLRKLSIRPQNGNG  148 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-------------------~~~l~~~~~L~~L~l~~~~~~~  148 (261)
                      .++           .+|. .+.+++|+.++++++ ....                   ...+..++.++.+.+.++....
T Consensus       109 ~l~-----------~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         109 QLE-----------KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCS-----------SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccc-----------cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            654           4443 567788888888776 1111                   1123344556666655411000


Q ss_pred             -----------------cchHHHHhCCCCCceEEEeeccccccccc--------------ccccCCccccceEEEec-cC
Q 042184          149 -----------------KDLCVLIANLENLENLIVLMKSKEEVLDL--------------QSLSNPPQYLQRLYFKG-DM  196 (261)
Q Consensus       149 -----------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--------------~~~~~~~~~L~~L~l~~-~l  196 (261)
                                       .........++.++.+++++|........              ......++.+....+.. .+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                             00112245567888888888754422110              00011111333333322 11


Q ss_pred             c-----------------CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184          197 K-----------------KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN  243 (261)
Q Consensus       197 ~-----------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~  243 (261)
                      .                 .+......+++|++|++++|.++.. +   ..+++|+.|+++ |.++
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~l-p---~~~~~L~~L~L~~N~L~  317 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-P---ALPPRLERLIASFNHLA  317 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCcc-c---cccCCCCEEECCCCcCC
Confidence            1                 1112223367899999999998853 2   247899999999 8775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=2.1e-14  Score=106.60  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=104.3

Q ss_pred             cccEEEecCC--CceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccC
Q 042184           33 NLHYLSLRNK--KVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS  110 (261)
Q Consensus        33 ~L~~L~l~~~--~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~  110 (261)
                      .++.+++.+.  .++.++..++.+++|++|++++|.++.++ .+..+++|++|++++|.++           .++.....
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~-----------~i~~~~~~   91 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-----------KIENLDAV   91 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC-----------SCSSHHHH
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccc-----------cccccccc
Confidence            3455566543  35577778888999999999999998775 5888999999999999765           44544455


Q ss_pred             CCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccch--HHHHhCCCCCceEEEeeccccccccc---------c
Q 042184          111 LTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDL--CVLIANLENLENLIVLMKSKEEVLDL---------Q  178 (261)
Q Consensus       111 ~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~---------~  178 (261)
                      +++|+.|++++| ...+ ..+..+++|+.|+++++  ....+  ...+..+++|++|++++|.+......         .
T Consensus        92 ~~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~L~~N--~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~  168 (198)
T d1m9la_          92 ADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHCCEEECSEEECCCH-HHHHHHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccc--hhccccccccccCCCccceeecCCCccccCcccccchhhHHHH
Confidence            668999999998 3333 45788899999999872  22233  35688899999999999976543221         1


Q ss_pred             cccCCccccceEE
Q 042184          179 SLSNPPQYLQRLY  191 (261)
Q Consensus       179 ~~~~~~~~L~~L~  191 (261)
                      .+..+| +|+.||
T Consensus       169 vi~~lp-~L~~LD  180 (198)
T d1m9la_         169 VVKRLP-NLKKLD  180 (198)
T ss_dssp             HHHHCS-SCCEES
T ss_pred             HHHHCC-CcCEeC
Confidence            145678 888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.4e-12  Score=106.05  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             cccceeecCCCCCC--CCcccccCcccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCcccc-----cchHhh-
Q 042184            9 KLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVRE-----LPVEIR-   75 (261)
Q Consensus         9 ~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~-   75 (261)
                      ++|++||+++++++  .+.+.+..++++++|++++|.++     .++..+..+++|++|++++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46888999999888  44455667788899999998876     334556788899999999888762     112222 


Q ss_pred             ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           76 NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ...+|++|++++|+++..      ....++..+..+++|+.|++++|
T Consensus        82 ~~~~L~~L~L~~n~it~~------~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGA------GCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TTCCCCEEECTTSCCBGG------GHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCCcccc------ccccccchhhccccccccccccc
Confidence            234699999999887652      34456667788888999998887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-10  Score=80.45  Aligned_cols=105  Identities=15%  Similarity=0.051  Sum_probs=86.0

Q ss_pred             CccccceeecCCCCCCCCcccccCcccccEEEecCC-Cceecc-cccCCCCCCcEEeCCCCccccc-chHhhccccccce
Q 042184            7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNK-KVKIIP-KSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYL   83 (261)
Q Consensus         7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~-~i~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L   83 (261)
                      .+.....++.+++++...|..+..+++|+.|++.++ .++.++ ..+..+++|++|++++|.++.+ +..+..+++|++|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            455567788888888888888889999999999766 488665 4588999999999999999977 4568899999999


Q ss_pred             eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      ++++|+++           .++.......+|+.|++++|
T Consensus        86 ~Ls~N~l~-----------~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          86 NLSFNALE-----------SLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             ECCSSCCS-----------CCCSTTTCSCCCCEEECCSS
T ss_pred             eccCCCCc-----------ccChhhhccccccccccCCC
Confidence            99999764           56666555567889999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.3e-10  Score=81.11  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             CccccCccccceeecCCC-CCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccc
Q 042184            2 NTSIANFKLMKVLDLEDA-PVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLK   78 (261)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~   78 (261)
                      |..+..+++|++|+++++ .++.++ ..|.++++|+.|++++|+++.+ +..+..+++|++|++++|+++.++.......
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence            566778899999999877 588655 6788999999999999999966 4568899999999999999998887776667


Q ss_pred             cccceeccceec
Q 042184           79 KLRYLMVYQYYF   90 (261)
Q Consensus        79 ~L~~L~l~~~~~   90 (261)
                      +|++|++++|.+
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            899999999965

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=1.6e-07  Score=66.79  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             cccccEEEecCC-Cce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCchhhhh
Q 042184           31 LLNLHYLSLRNK-KVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEE   99 (261)
Q Consensus        31 l~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   99 (261)
                      .++|+.|+++++ .++     .+...+...++|++|++++|.+.     .+...+...++|++|++++|.++..      
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~------   87 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE------   87 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH------
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH------
Confidence            345555555542 233     12223444555666666655554     2223344455566666666655431      


Q ss_pred             hhhhcCCcccCCCCCCeEecccc-----c----hHHHHHHhccccccEEEeec
Q 042184          100 AAAKLHPGFGSLTNLQKLCIIEA-----D----SEVLKELMKLRQLRKLSIRP  143 (261)
Q Consensus       100 ~~~~l~~~~~~~~~L~~L~l~~~-----~----~~~~~~l~~~~~L~~L~l~~  143 (261)
                      ....+..++...++|+.|+++++     .    ..+...+...++|+.|++..
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            23334445555555666655544     1    11233344455555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.35  E-value=7.8e-08  Score=68.47  Aligned_cols=114  Identities=12%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             cCccccceeecCCC-CCC-----CCcccccCcccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc-----c
Q 042184            6 ANFKLMKVLDLEDA-PVV-----YLPEGVGSLLNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR-----E   69 (261)
Q Consensus         6 ~~~~~L~~L~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~   69 (261)
                      .+.+.|++|+++++ .+.     .+...+...+.|+.|++++|.++     .+...+...+.|++|++++|.++     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35689999999975 566     13345667789999999999887     23234556789999999999988     2


Q ss_pred             cchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184           70 LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA  122 (261)
Q Consensus        70 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  122 (261)
                      +...+...++|++|++++|....   +.......+...+...+.|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~---~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSV---LGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCC---CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCC---ccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            44456778899999999875432   111123446667777889999999776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.2e-08  Score=69.56  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=58.3

Q ss_pred             cCcccccEEEecCCCceecc---cccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhc
Q 042184           29 GSLLNLHYLSLRNKKVKIIP---KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKL  104 (261)
Q Consensus        29 ~~l~~L~~L~l~~~~i~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l  104 (261)
                      ..+++|++|++++|+++.++   ..+..+++|++|++++|.+..++. ......+|+.+++++|.+......   .....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~---~~~y~  138 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD---QSTYI  138 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS---HHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc---chhHH
Confidence            46788999999999888543   345678899999999998886654 233455788999998876531000   00111


Q ss_pred             CCcccCCCCCCeEec
Q 042184          105 HPGFGSLTNLQKLCI  119 (261)
Q Consensus       105 ~~~~~~~~~L~~L~l  119 (261)
                      ...+..+|+|+.|+-
T Consensus       139 ~~i~~~~P~L~~LDg  153 (162)
T d1koha1         139 SAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHTTSTTCCEETT
T ss_pred             HHHHHHCCCCCEECc
Confidence            233556788888863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.4e-08  Score=68.96  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=23.3

Q ss_pred             CCCCCCcEEeCCCCccccc---chHhhccccccceeccceecc
Q 042184           52 GNLLGLESLDLKNTLVREL---PVEIRNLKKLRYLMVYQYYFT   91 (261)
Q Consensus        52 ~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~   91 (261)
                      ..+++|++|++++|.++.+   +..+..+++|+.|++++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3456666666666666533   234455666666666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.13  E-value=1.5e-06  Score=61.58  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             cccccEEEecC-CCce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCchhhhh
Q 042184           31 LLNLHYLSLRN-KKVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEE   99 (261)
Q Consensus        31 l~~L~~L~l~~-~~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   99 (261)
                      .+.|+.|++++ +.++     .+...+...++|++|++++|.++     .+...+...++++.++++.|.++..      
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~------   89 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS------   89 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH------
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch------
Confidence            35555555554 2333     12233445555666666655544     1223334455555555555544321      


Q ss_pred             hhhhcCCcccCCCCCCeEec
Q 042184          100 AAAKLHPGFGSLTNLQKLCI  119 (261)
Q Consensus       100 ~~~~l~~~~~~~~~L~~L~l  119 (261)
                      ....+...+...++|+.+++
T Consensus        90 g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEEC
T ss_pred             hHHHHHHHHHhCccccEEee
Confidence            23334444444555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=2.6e-06  Score=60.22  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=80.3

Q ss_pred             cCCCCCCcEEeCCC-Cccc-----ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--
Q 042184           51 IGNLLGLESLDLKN-TLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--  122 (261)
Q Consensus        51 l~~l~~L~~L~l~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--  122 (261)
                      ..+.++|++|++++ +.++     .+...+...++|++|++++|.++..      ....+...+...+.++.++++++  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~------~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP------VAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH------HHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH------HHHHHHHHHhhcccchhhhhccccc
Confidence            45679999999997 4465     2445566788999999999987642      44555666777788999999888  


Q ss_pred             c----hHHHHHHhccccccEEEeecc-CCCcc----chHHHHhCCCCCceEEEeeccc
Q 042184          123 D----SEVLKELMKLRQLRKLSIRPQ-NGNGK----DLCVLIANLENLENLIVLMKSK  171 (261)
Q Consensus       123 ~----~~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~l~~~~~L~~L~l~~n~~  171 (261)
                      .    ..+...+...++|+.+++..+ +....    .+...+...+.|++|+++.+..
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2    224455677788888777642 22222    3455677888999999876643