Citrus Sinensis ID: 042215

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MNDTHKHEMGGMAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mndthkhemggmappptmprhkmmmhmtFFWGKNALVLfkgwpgtstgMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFgsrvfhksapppktndlspmsc
Flexible Loop (DISEMBL)
mndthkhemggmappptmPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKsapppktndlspmsc
Low Complexity Region (SEG)
MNDTHKHEMGGMAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC
Disordered region (IsUnstruct)
***********************MMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFH****************
Disordered Region (DISOPRED)
***************************TFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRV************LSPMSC
Disordered Region (DISEMBL)
***********MAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAP************
Disordered Region (DISPRO)
**************P*****HKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVF*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDTHKHEMGGMAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q39065	170	Copper transporter 1 OS=A	yes	no	0.817	0.711	0.604	3e-38
Q8GWP3	145	Copper transporter 6 OS=A	no	no	0.891	0.910	0.503	1e-32
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.804	0.753	0.541	2e-32
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.986	0.906	0.45	1e-28
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.824	0.807	0.5	3e-28
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.777	0.793	0.491	9e-26
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.837	0.821	0.488	5e-23
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.804	0.646	0.496	2e-17
Q5ZD08	150	Copper transporter 3 OS=O	no	no	0.851	0.84	0.507	2e-13
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.858	0.693	0.352	2e-10

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 96/124 (77%), Gaps = 3/124 (2%)

Query: 28  TFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTG---NVAAGI 84
           TFFWGKN  VLF GWPGTS+GMYAL L+FVF + +L EWL+HS L++  TG   N AAG+
Sbjct: 45  TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGL 104

Query: 85  IQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLS 144
           IQT ++T+R+GLA LVMLA+MSFN GVFL A+AGH++GF+LFGS+ F  ++   KTN + 
Sbjct: 105 IQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVP 164

Query: 145 PMSC 148
           P  C
Sbjct: 165 PSGC 168

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 97/139 (69%), Gaps = 7/139 (5%)

Query: 8   EMGGMAP--PPTMPRHK----MMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMG 61
           + G M P  P +M  H     +MMHMTFFWGKN  +LF GWPGTS GMY L L+ VF + 
Sbjct: 2   DHGNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLA 61

Query: 62  ILVEWLSHSRLIK-TGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHS 120
           ++VEWL+HS +++  G+ + A G++QT ++T++ GLA LVMLA+MSFN GVF+ A+AG +
Sbjct: 62  VIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFA 121

Query: 121 LGFLLFGSRVFHKSAPPPK 139
           +GF+LFGS  F   +   K
Sbjct: 122 VGFMLFGSTAFKNPSDDEK 140

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 90/120 (75%), Gaps = 1/120 (0%)

Query: 29  FFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIK-TGTGNVAAGIIQT 87
           FFWGKN  VLF GWPGTS+GMYAL L+ +F + ++ EWL+HS +++ +G+ N AAG+ QT
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 88  FMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMS 147
            ++T++ GL+ LVMLA+MSFN GVF+ A+AG+ +GF LFGS  F K +   KT +L P S
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQKTAELLPPS 153

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 14/160 (8%)

Query: 3   DTHKHEMGGMAPPPTMP---------RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALA 53
           D   H+MGGM+PP             +     HMTFFWGKN+ VLF  WPGT  GMYALA
Sbjct: 2   DMGGHDMGGMSPPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALA 61

Query: 54  LVFVFAMGILVEWLSHSR-----LIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFN 108
           L+FVFA+ ++VE+L   R              A G+ +  +HT+RVG+A L+MLALMSFN
Sbjct: 62  LIFVFALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFN 121

Query: 109 VGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC 148
            GVFL AVAGH+ GFL F + +    A   +     P  C
Sbjct: 122 GGVFLVAVAGHAAGFLAFRAGLCGGPAQVEEDRKNDPACC 161

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 81/122 (66%)

Query: 20  RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGN 79
           RH  MMHMTFFWGK   VLF GWPGTS  MY + L  +F +    E LS    +K+G  +
Sbjct: 25  RHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPAS 84

Query: 80  VAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPK 139
           +  G++QT ++T+R  L+ LVMLA+MSFN GVF+AA+AG  LGF++FGSR F  ++    
Sbjct: 85  LGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNSH 144

Query: 140 TN 141
           T 
Sbjct: 145 TE 146

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 3/118 (2%)

Query: 19  PRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWL---SHSRLIKT 75
           P    ++H TF+WG N  VLF GWPG+  GMYALAL+FVF +  L EWL   S +  IK 
Sbjct: 24  PHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQ 83

Query: 76  GTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHK 133
           G   +A    +T M+T++ G + LV+LA++SFN GVFLAA+ GH+LGF +F  R F  
Sbjct: 84  GADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRN 141

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 25  MHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRL---IKTGTGNVA 81
           MHMTFFWGKN  VLF  WPG   GMYALA++F+FA+ +L+E+  +  L   +       A
Sbjct: 23  MHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRA 82

Query: 82  AGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTN 141
           A  ++T +H +RVG+A L+MLALMSFN GVFLA VAGH+ GFL F + +      PP   
Sbjct: 83  AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPLEE 142

Query: 142 DL--SPMSC 148
           D    P+ C
Sbjct: 143 DRKNDPVCC 151

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 87/145 (60%), Gaps = 26/145 (17%)

Query: 12  MAPPPT---------MPRHKM--MMHMTFFWGKNALVLFKGWPGTS-TGMYALALVFVFA 59
           MAPP +          P+HKM  MMHMTFFW   A+VL +GWPG    GMYAL L+FV A
Sbjct: 14  MAPPRSGHATAAAPPPPQHKMAMMMHMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLA 73

Query: 60  MGILVEWLS--HSRLIKTGTGNVAAGIIQ------------TFMHTIRVGLANLVMLALM 105
           +  L E LS    RL + G G  ++   +            T +H  R+G+A LVMLA+M
Sbjct: 74  LAALTEGLSVLSRRLARRGGGAASSDGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVM 133

Query: 106 SFNVGVFLAAVAGHSLGFLLFGSRV 130
           SFNVGV LAAVAGH+LGFLL  SRV
Sbjct: 134 SFNVGVLLAAVAGHALGFLLARSRV 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5ZD08|COPT3_ORYSJ Copper transporter 3 OS=Oryza sativa subsp. japonica GN=COPT3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 4/130 (3%)

Query: 20  RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIK-TGTG 78
           R K  MHMTF+WGKN+ +LF GWPG S GMYALAL  VFA+ +L+E+L   R+ + +  G
Sbjct: 23  RRKRYMHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFLGSPRVQESSSLG 82

Query: 79  NVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPP 138
           +         +H +RVGLA L+MLALMSFNVGV LAAVAGH+ GFL F + +        
Sbjct: 83  SRRRRATAAAVHAVRVGLAYLLMLALMSFNVGVLLAAVAGHAAGFLAFRAGL---CGGGY 139

Query: 139 KTNDLSPMSC 148
           K  +L+P +C
Sbjct: 140 KKGELAPAAC 149

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 12  MAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGM---YALALVFVFAMGILVEWLS 68
           M P   MP   M   M+F WG  A+VLF  WPG   G+   +   L+ +    +     +
Sbjct: 22  MMPGMAMP---MTTGMSFTWGHRAVVLFPRWPGDRAGVGMYFLCLLLVLALAALAEALSA 78

Query: 69  HSRLIK---------TGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGH 119
            SR +                   ++   +H  R+GLA LVMLA+MSFN GV LAAVAGH
Sbjct: 79  ASRRLDLDLDLSRSRGRRRRRRQQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGH 138

Query: 120 SLGFLLFGSRVFHKSAPPPKTN 141
           + GFLL  S +    A  P+ +
Sbjct: 139 AAGFLLARSGLLGSRAAAPEID 160

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
224104365	155	copper transporter [Populus trichocarpa]	0.959	0.916	0.629	3e-47
449455066	159	PREDICTED: copper transporter 1-like iso	0.993	0.924	0.574	1e-39
225434744	173	PREDICTED: copper transporter 1 [Vitis v	0.939	0.803	0.557	6e-39
297745977	133	unnamed protein product [Vitis vinifera]	0.851	0.947	0.604	2e-38
224104361	162	copper transporter [Populus trichocarpa]	0.817	0.746	0.637	6e-38
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.817	0.683	0.637	2e-37
297745980	160	unnamed protein product [Vitis vinifera]	0.817	0.756	0.637	3e-37
449455068	153	PREDICTED: copper transporter 1-like iso	0.898	0.869	0.585	1e-36
225434748	151	PREDICTED: copper transporter 6 [Vitis v	0.952	0.933	0.592	1e-36
225440544	152	PREDICTED: copper transporter 6 [Vitis v	0.864	0.842	0.596	1e-36

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 114/151 (75%), Gaps = 9/151 (5%)

Query: 6   KHEMGGMAPPPTMP-------RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVF 58
            H + GM+PPP+ P        HKMM HMTFFWGK+ L+LF GWPGTSTGMY LALVF+F
Sbjct: 4   DHHLPGMSPPPSTPMNGTDGMDHKMMTHMTFFWGKDTLILFSGWPGTSTGMYVLALVFIF 63

Query: 59  AMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAG 118
            + +LVEWLSH RL+K G+ NVAAG+IQ  MH +RVGLA +VMLA+MSFN GVF+ AVAG
Sbjct: 64  VLAVLVEWLSHCRLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNGGVFIVAVAG 123

Query: 119 HSLGFLLFGSRVFHKSAPPP--KTNDLSPMS 147
           H +GF +FGSRVF  +  PP  KT+DL P S
Sbjct: 124 HLVGFFIFGSRVFKDTEMPPYHKTSDLPPTS 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455066|ref|XP_004145274.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449471163|ref|XP_004153227.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449510896|ref|XP_004163804.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 8/155 (5%)

Query: 2   NDTHKHEMGGMAPPPTMPRHK-------MMMHMTFFWGKNALVLFKGWPGTSTGMYALAL 54
            + H H M GM PPP             MMMHMTFFWG NA +LF  WPG  +GMYALAL
Sbjct: 5   TEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALAL 64

Query: 55  VFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLA 114
           +F+F +  LVEWL+H RLIK  +   AAG+I+T MHT+RVGLA LVMLA+MSFNVGV L 
Sbjct: 65  IFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLV 124

Query: 115 AVAGHSLGFLLFGSRVFHKS-APPPKTNDLSPMSC 148
           A+ GH LGF LFGS+ F +S A   K++DL P+SC
Sbjct: 125 AIGGHCLGFFLFGSKFFKRSEAVSGKSSDLPPLSC 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434744|ref|XP_002280088.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496082|gb|ADW93918.1| copper transporter [Vitis vinifera]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 105/147 (71%), Gaps = 8/147 (5%)

Query: 5   HKHEMGGMAPPPTMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILV 64
           ++  MG M    TM     M HMTFFWG +  + F GWPG S+GMYA+AL  VF + +LV
Sbjct: 32  NRTAMGDMKMDKTM-----MTHMTFFWGMSTEIFFSGWPGQSSGMYAVALALVFGLSMLV 86

Query: 65  EWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFL 124
           EWLSH+R IK+ T  + AG++QT M+ +RVGLA LVMLA+MSFNVGVFL A+AG++ GFL
Sbjct: 87  EWLSHTRFIKSTTNKLVAGLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFL 146

Query: 125 LFGSRVFHKSA---PPPKTNDLSPMSC 148
           LFGSRVF  S+   P  K +DL P++C
Sbjct: 147 LFGSRVFRDSSEMLPYEKASDLPPLNC 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745977|emb|CBI16033.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 99/129 (76%), Gaps = 3/129 (2%)

Query: 23  MMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAA 82
           MM HMTFFWG +  + F GWPG S+GMYA+AL  VF + +LVEWLSH+R IK+ T  + A
Sbjct: 5   MMTHMTFFWGMSTEIFFSGWPGQSSGMYAVALALVFGLSMLVEWLSHTRFIKSTTNKLVA 64

Query: 83  GIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSA---PPPK 139
           G++QT M+ +RVGLA LVMLA+MSFNVGVFL A+AG++ GFLLFGSRVF  S+   P  K
Sbjct: 65  GLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYTTGFLLFGSRVFRDSSEMLPYEK 124

Query: 140 TNDLSPMSC 148
            +DL P++C
Sbjct: 125 ASDLPPLNC 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 99/124 (79%), Gaps = 3/124 (2%)

Query: 28  TFFWGKNALVLFKGWPGTSTG---MYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGI 84
           TFFWGK+  +LF GWPG+S     MY +AL+FVF + ILVEWLSH +L+K G+ +VAAG+
Sbjct: 39  TFFWGKSTEILFSGWPGSSDKRPHMYFVALLFVFVLSILVEWLSHCQLMKPGSNHVAAGL 98

Query: 85  IQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLS 144
           +QT +H +RVGLA +VMLA+MSFN GVFLAAVAGH+LGFL FGSRVF ++  P KT+DL 
Sbjct: 99  VQTLLHALRVGLAYMVMLAIMSFNGGVFLAAVAGHTLGFLFFGSRVFKRTQNPAKTSDLP 158

Query: 145 PMSC 148
           P SC
Sbjct: 159 PSSC 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 97/124 (78%), Gaps = 3/124 (2%)

Query: 28  TFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQT 87
           TF+WGK A +LF GWPGT +GMYALAL+ VF M I+VEWLSH +LIK G+ +VAAG++QT
Sbjct: 54  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 113

Query: 88  FMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSA---PPPKTNDLS 144
            +H IR+GL  +VMLALMSFN G+FL AVAGH++GFL+FGSR+F  S    P  K   LS
Sbjct: 114 LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRLFRGSETLRPSEKAFYLS 173

Query: 145 PMSC 148
           PMSC
Sbjct: 174 PMSC 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 97/124 (78%), Gaps = 3/124 (2%)

Query: 28  TFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQT 87
           TF+WGK A +LF GWPGT +GMYALAL+ VF M I+VEWLSH +LIK G+ +VAAG++QT
Sbjct: 37  TFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWLSHFQLIKPGSTHVAAGVVQT 96

Query: 88  FMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSA---PPPKTNDLS 144
            +H IR+GL  +VMLALMSFN G+FL AVAGH++GFL+FGSR+F  S    P  K   LS
Sbjct: 97  LLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHAVGFLVFGSRLFRGSETLRPSEKAFYLS 156

Query: 145 PMSC 148
           PMSC
Sbjct: 157 PMSC 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455068|ref|XP_004145275.1| PREDICTED: copper transporter 1-like isoform 2 [Cucumis sativus] gi|449471166|ref|XP_004153228.1| PREDICTED: copper transporter 1-like isoform 2 [Cucumis sativus] gi|449510900|ref|XP_004163805.1| PREDICTED: copper transporter 1-like isoform 2 [Cucumis sativus]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 97/140 (69%), Gaps = 7/140 (5%)

Query: 2   NDTHKHEMGGMAPPPTMPRHK-------MMMHMTFFWGKNALVLFKGWPGTSTGMYALAL 54
            + H H M GM PPP             MMMHMTFFWG NA +LF  WPG  +GMYALAL
Sbjct: 5   TEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMYALAL 64

Query: 55  VFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLA 114
           +F+F +  LVEWL+H RLIK  +   AAG+I+T MHT+RVGLA LVMLA+MSFNVGV L 
Sbjct: 65  IFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLV 124

Query: 115 AVAGHSLGFLLFGSRVFHKS 134
           A+ GH LGF LFGS+ F +S
Sbjct: 125 AIGGHCLGFFLFGSKFFKRS 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434748|ref|XP_002280121.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496078|gb|ADW93916.1| copper transporter [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 110/152 (72%), Gaps = 11/152 (7%)

Query: 1   MNDTHKHEMGGMAPPPT-------MPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALA 53
           M+  H H    M+PPP        M   +MMMHMTF+WGK A +LF GWPG  +GMYALA
Sbjct: 1   MDQDHDHMH--MSPPPANSTGMSPMHHMEMMMHMTFYWGKEAEILFSGWPGARSGMYALA 58

Query: 54  LVFVFAMGILVEWLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFL 113
           L+ VF MGI+VEWLS+ RLIK G+ + AAG++QT +HTIR+GLA +VMLALMSFN GVFL
Sbjct: 59  LIVVFVMGIIVEWLSYCRLIKPGSTHAAAGLVQTLLHTIRIGLAYMVMLALMSFNGGVFL 118

Query: 114 AAVAGHSLGFLLFGSRVFHKSA--PPPKTNDL 143
            AVAGH++GFL+FGSRV   S      KT+DL
Sbjct: 119 VAVAGHAVGFLVFGSRVCRGSEMVSLEKTSDL 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440544|ref|XP_002276084.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496072|gb|ADW93913.1| copper transporter [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 7   HEMGGMAPPPTMP-RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVE 65
           H+MGG  P   +   H  ++HMTFFWGKNA +LF GWPGTS+GMYALAL+ VF + +L+E
Sbjct: 9   HDMGGTPPVANVSGTHLHLIHMTFFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLE 68

Query: 66  WLSHSRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLL 125
           WLS S L+K G  NV  G++QT ++ IR G + ++MLA+MSFN G+FLAAVAGH+LGFL+
Sbjct: 69  WLSRSSLLKPGPHNVTTGLLQTALYAIRSGFSYMLMLAVMSFNGGIFLAAVAGHALGFLI 128

Query: 126 FGSRVFHKS 134
           FGSRVF K+
Sbjct: 129 FGSRVFKKT 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.858	0.747	0.623	3.6e-41
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.986	0.924	0.512	4.3e-38
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.878	0.896	0.510	1.2e-33
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.945	0.927	0.490	3.4e-29
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.986	0.906	0.468	4.4e-29
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.783	0.768	0.517	1.5e-28
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.763	0.779	0.5	9.4e-27
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.331	0.335	0.387	7.6e-13
UNIPROTKB|J9P9D2	178	SLC31A1 "Uncharacterized prote	0.344	0.286	0.442	2.8e-09
DICTYBASE|DDB_G0285545	146	DDB_G0285545 "Ctr copper trans	0.331	0.335	0.408	6.5e-09

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 81/130 (62%), Positives = 102/130 (78%)

Query:    22 KMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTG--- 78
             KMMMHMTFFWGKN  VLF GWPGTS+GMYAL L+FVF + +L EWL+HS L++  TG   
Sbjct:    39 KMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSA 98

Query:    79 NVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSAPPP 138
             N AAG+IQT ++T+R+GLA LVMLA+MSFN GVFL A+AGH++GF+LFGS+ F  ++   
Sbjct:    99 NRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDR 158

Query:   139 KTNDLSPMSC 148
             KTN + P  C
Sbjct:   159 KTNYVPPSGC 168

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/154 (51%), Positives = 107/154 (69%)

Query:     1 MNDTHKHEMGGMAPPP------TMPRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALAL 54
             M+  H H+M   +P        T P H MMMHMTFFWGKN  VLF GWPGTS+GMYAL L
Sbjct:     1 MDHDHMHDMPPPSPSSSSMSNHTTP-HMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCL 59

Query:    55 VFVFAMGILVEWLSHSRLIK-TGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFL 113
             + +F + ++ EWL+HS +++ +G+ N AAG+ QT ++T++ GL+ LVMLA+MSFN GVF+
Sbjct:    60 IVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFI 119

Query:   114 AAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMS 147
              A+AG+ +GF LFGS  F K +   KT +L P S
Sbjct:   120 VAIAGYGVGFFLFGSTTFKKPSDDQKTAELLPPS 153

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/137 (51%), Positives = 96/137 (70%)

Query:    10 GGMAP--PPTMPRHK----MMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGIL 63
             G M P  P +M  H     +MMHMTFFWGKN  +LF GWPGTS GMY L L+ VF + ++
Sbjct:     4 GNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVI 63

Query:    64 VEWLSHSRLIK-TGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLG 122
             VEWL+HS +++  G+ + A G++QT ++T++ GLA LVMLA+MSFN GVF+ A+AG ++G
Sbjct:    64 VEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVG 123

Query:   123 FLLFGSRVFHKSAPPPK 139
             F+LFGS  F   +   K
Sbjct:   124 FMLFGSTAFKNPSDDEK 140

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 74/151 (49%), Positives = 95/151 (62%)

Query:     8 EMGG--MA-PPPTMPRHKMM-MHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGIL 63
             +MGG  MA PPP  P  K   MHMTFFWGKN  VLF  WPG   GMYALA++F+FA+ +L
Sbjct:     2 DMGGNGMAMPPPPAPVKKARYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVL 61

Query:    64 VEWLSH----SRLIKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGH 119
             +E+  +    +RL +      AA + +T +H +RVG+A L+MLALMSFN GVFLA VAGH
Sbjct:    62 LEFRGYRVLEARLARRRAPRAAAAL-RTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGH 120

Query:   120 SLGFLLFGSRVFHKSAPPPKTNDLS--PMSC 148
             + GFL F + +      PP   D    P+ C
Sbjct:   121 AAGFLAFRAGLCGGGPAPPLEEDRKNDPVCC 151

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 75/160 (46%), Positives = 93/160 (58%)

Query:     3 DTHKHEMGGMAPPPT-------MPRHKMMM--HMTFFWGKNALVLFKGWPGTSTGMYALA 53
             D   H+MGGM+PP         M   K M   HMTFFWGKN+ VLF  WPGT  GMYALA
Sbjct:     2 DMGGHDMGGMSPPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALA 61

Query:    54 LVFVFAMGILVEWLSHSRL-----IKTGTGNVAAGIIQTFMHTIRVGLANLVMLALMSFN 108
             L+FVFA+ ++VE+L   R              A G+ +  +HT+RVG+A L+MLALMSFN
Sbjct:    62 LIFVFALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFN 121

Query:   109 VGVFLAAVAGHSLGFLLFGSRVFHKSAPPPKTNDLSPMSC 148
              GVFL AVAGH+ GFL F + +    A   +     P  C
Sbjct:   122 GGVFLVAVAGHAAGFLAFRAGLCGGPAQVEEDRKNDPACC 161

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 60/116 (51%), Positives = 80/116 (68%)

Query:    20 RHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGN 79
             RH  MMHMTFFWGK   VLF GWPGTS  MY + L  +F +    E LS    +K+G  +
Sbjct:    25 RHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPAS 84

Query:    80 VAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKSA 135
             +  G++QT ++T+R  L+ LVMLA+MSFN GVF+AA+AG  LGF++FGSR F  ++
Sbjct:    85 LGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATS 140

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 58/116 (50%), Positives = 77/116 (66%)

Query:    19 PRHKMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWL---SHSRLIKT 75
             P    ++H TF+WG N  VLF GWPG+  GMYALAL+FVF +  L EWL   S +  IK 
Sbjct:    24 PHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQ 83

Query:    76 GTGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVF 131
             G   +A    +T M+T++ G + LV+LA++SFN GVFLAA+ GH+LGF +F  R F
Sbjct:    84 GADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query:    24 MMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRL 72
             MMHMTF+WG  A +LF  W   S   Y L L+  F      ++L + R+
Sbjct:     1 MMHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRI 49

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|J9P9D2 SLC31A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 96 (38.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query:    21 HKMMMHMTFFWG-KNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSR 71
             H MMMHMTF++G KN  +LF G    + G  A A V VF + +  E L  +R
Sbjct:    27 HNMMMHMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIAR 78

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

DICTYBASE|DDB_G0285545 DDB_G0285545 "Ctr copper transporter family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 94 (38.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:    86 QTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVFHKS 134
             +T +H I   +   +ML  MSFN G+ ++ V G  +GF LFG + F KS
Sbjct:    89 KTIVHMIAFIVNYTIMLIFMSFNGGICISCVLGIGVGFYLFGQKRFSKS 137

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39065	COPT1_ARATH	No assigned EC number	0.6048	0.8175	0.7117	yes	no
Q94EE4	COPT1_ORYSJ	No assigned EC number	0.45	0.9864	0.9068	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	1e-28

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score =  100 bits (252), Expect = 1e-28
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 25  MHMTFFWG-KNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLIKTGTGNVAAG 83
           M M F WG K+  VLF GW  T+ GMYA + + +F + IL E L   R       ++   
Sbjct: 1   MSMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRVRRKLERM-SLFQH 59

Query: 84  IIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLF 126
           +I+  +H ++VGL+ L+ML +M++N G+FLA V G +LG+ LF
Sbjct: 60  LIRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG3386	155	consensus Copper transporter [Inorganic ion transp	100.0
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	100.0
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	93.22
COG2991	77	Uncharacterized protein conserved in bacteria [Fun	83.65

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.7e-36  Score=229.08  Aligned_cols=110  Identities=36%  Similarity=0.582  Sum_probs=100.6

Q ss_pred             CcceeeEEecccceeEEecCCcCCChHHHHHHHHHHHHHHHHHHHHhhcccc-----c---cC------------CCc-h
Q 042215           22 KMMMHMTFFWGKNALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLI-----K---TG------------TGN-V   80 (148)
Q Consensus        22 ~~~M~M~F~~~~~~~lLF~~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~-----~---p~------------~~~-~   80 (148)
                      .|+|.|+|||+.++++|||+|+++|+++|+++|+++|++|+++|+||+.|+.     +   +.            +.. .
T Consensus        13 ~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~   92 (155)
T KOG3386|consen   13 TMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLNS   92 (155)
T ss_pred             CCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhhh
Confidence            8999999999988999999999999999999999999999999999998853     1   10            001 5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhccccc
Q 042215           81 AAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLFGSRVF  131 (148)
Q Consensus        81 ~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~fg~~~~  131 (148)
                      ..|++|+++|++|+.++|+|||++||||+|+++||++|+++||++|+.+..
T Consensus        93 ~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~  143 (155)
T KOG3386|consen   93 ASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF  143 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence            679999999999999999999999999999999999999999999999886

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=100.00  E-value=4.8e-35  Score=218.08  Aligned_cols=102  Identities=35%  Similarity=0.645  Sum_probs=58.6

Q ss_pred             eeeEEeccc-ceeEEecCCcCCChHHHHHHHHHHHHHHHHHHHHhhcccc------cc-----------C----------
Q 042215           25 MHMTFFWGK-NALVLFKGWPGTSTGMYALALVFVFAMGILVEWLSHSRLI------KT-----------G----------   76 (148)
Q Consensus        25 M~M~F~~~~-~~~lLF~~W~~~s~~~~~~s~v~vf~la~l~E~L~~~r~~------~p-----------~----------   76 (148)
                      |+|+|||+. ++++||++|+++|.++|+++|+++|++|+++|+||.+|..      ++           +          
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            899999997 9999999999999999999999999999999999998852      00           0          


Q ss_pred             --------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh
Q 042215           77 --------------TGNVAAGIIQTFMHTIRVGLANLVMLALMSFNVGVFLAAVAGHSLGFLLF  126 (148)
Q Consensus        77 --------------~~~~~~~l~~sll~~~q~~l~YlLMLvvMTfN~~lf~aVv~G~~iGy~~f  126 (148)
                                    +.+++.|++|+++|++|++++|+|||+|||||+|+|+||++|.++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence                          00135689999999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=93.22  E-value=0.081  Score=34.16  Aligned_cols=28  Identities=14%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             HhhhhHHHHHHHHHHHHhhHhhcccccc
Q 042215          105 MSFNVGVFLAAVAGHSLGFLLFGSRVFH  132 (148)
Q Consensus       105 MTfN~~lf~aVv~G~~iGy~~fg~~~~~  132 (148)
                      |+.|+|+++.+++|..+|.+.--+++.+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6899999999999999999998888776

>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.65  E-value=1  Score=30.76  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=17.7

Q ss_pred             hhHHHHHHHHHHHHhhHhhccccc
Q 042215          108 NVGVFLAAVAGHSLGFLLFGSRVF  131 (148)
Q Consensus       108 N~~lf~aVv~G~~iGy~~fg~~~~  131 (148)
                      -.++|+.|++|.++||.+- ++++
T Consensus         7 tFg~Fllvi~gMsiG~I~k-rk~I   29 (77)
T COG2991           7 TFGIFLLVIAGMSIGYIFK-RKSI   29 (77)
T ss_pred             HHHHHHHHHHHHhHhhhee-cccc
Confidence            3578999999999999754 4443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.76
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.93
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.09

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.76  E-value=3.9e-12  Score=71.52  Aligned_cols=28  Identities=32%  Similarity=0.616  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042215           82 AGIIQTFMHTIRVGLANLVMLALMSFNV  109 (148)
Q Consensus        82 ~~l~~sll~~~q~~l~YlLMLvvMTfN~  109 (148)
                      .|++|+++|++|..+||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999996

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=97.93  E-value=1.1e-08  Score=55.95  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=22.7

Q ss_pred             hhhHHHHHHHHHHHHhhHhhcccc
Q 042215          107 FNVGVFLAAVAGHSLGFLLFGSRV  130 (148)
Q Consensus       107 fN~~lf~aVv~G~~iGy~~fg~~~  130 (148)
                      ||+|+++||++|+++||++|++++
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00