Citrus Sinensis ID: 042217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MDPTLKRSNTKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVSADSDISRFLLNKPSKQQPQRKAKESRRTTEASKEELKKSAKGGSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEEccccccEEEEccccEEEEEEccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHcccHHHccccHHHHHcccccccccccccccHcHHHHHHHHHHcHccccccccccccccccccHcccccccccHHEEcccccccccccccccEEHEccccccEEEEEEccccccccccccccccHHEccccccccccccccccHcHHHHccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEE
Coil and Loop (DISEMBL)
mdptlkrsntksiiktktshptetnldaprsskpfyymsnnWSRLNLYRNEArasqkqivnppskdihLQARAMTVSADSDISRFllnkpskqqpqrkakesrrtTEASKEELKKsakggsvnslnmgafdceegleskklvfvkdkdVKKDLEHEVKDLKRVSVsfgrrrsfcGSRVELADVLASCGVkivsvdmppfmqihAVDCARKTYDSLEKFTAKTLALTLKKEfdevygpawhcivgtsfgsfvthsvggflyfsmdqklyil
Flexible Loop (DISEMBL)
mdptlkrsntksiiktktshptetnldaprsskpfyYMSNNWSRLNLYRNEARASqkqivnppskDIHLQARAMTVSADSDISRFllnkpskqqpqrkakesrrtteaskeelkksakggsvnslnMGAFDCEegleskklvfvkdkdvkkdlehevkdlkrvsvsfgrrrsfcgsRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLyfsmdqklyil
Low Complexity Region (SEG)
MDPTLKRSNTKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVSADSDISRFLLNKPSKQQPQRKAKESRRTTeaskeelkksakggsVNSLNMGAFDCEEGLESkklvfvkdkdvkkdlehevkdLKrvsvsfgrrrsfcgsrvELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Disordered region (IsUnstruct)
**********************************FYYMSNNWSRLNLYR********************************************************************************FDCEEGLESKKLVFVKDKDVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYI*
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Disordered Region (DISEMBL)
*********TKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVSADSDISRFLLNKP*****************************GSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Disordered Region (DISPRO)
********************PTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARA****IVNPPSKDIHLQARAMTVSADSDISRFLL************************ELK****GGSVNSL*MGAFDCEEGLESKKLVFVKDKD********************RRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPTLKRSNTKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVSADSDISRFLLNKPSKQQPQRKAKESRRTTEASKEELKKSAKGGSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q86A88	91	Dynein light chain, cytop	yes	no	0.296	0.879	0.439	2e-15
O02414	89	Dynein light chain LC6, f	N/A	no	0.285	0.865	0.506	3e-14
Q39580	91	Dynein 8 kDa light chain,	N/A	no	0.285	0.846	0.469	5e-13
Q22799	89	Dynein light chain 1, cyt	yes	no	0.285	0.865	0.469	7e-13
Q24117	89	Dynein light chain 1, cyt	yes	no	0.285	0.865	0.481	8e-13
O96860	89	Dynein light chain 2, cyt	yes	no	0.285	0.865	0.481	9e-13
Q78P75	89	Dynein light chain 2, cyt	yes	no	0.285	0.865	0.469	1e-12
Q9D0M5	89	Dynein light chain 2, cyt	yes	no	0.285	0.865	0.469	1e-12
Q96FJ2	89	Dynein light chain 2, cyt	yes	no	0.285	0.865	0.469	1e-12
Q3MHR3	89	Dynein light chain 2, cyt	yes	no	0.285	0.865	0.469	1e-12

>sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFG 248
           + + + DMP FMQ  A +C  K ++  E    + +A+ +KKEFD+ Y P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 65

Query: 249 SFVTHSVGGFLYFSMDQKLYIL 270
           SFVTH    F+YF++++   +L
Sbjct: 66  SFVTHETKNFIYFNINKHSVLL 87

Acts as a non-catalytic accessory component of a dynein complex.
Dictyostelium discoideum (taxid: 44689)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DMP  MQ  AVDCA +   +LEKF   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAVLL 85

Anthocidaris crassispina (taxid: 7629)

>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD  + P WHCIVG +FGS
Sbjct: 10  IKNADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGS 66

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 67  YVTHETKHFIYFYLGQVAILL 87

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  A+DCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETRHFIYFYLGQVAILL 85

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETRHFIYFYLGQVAILL 85

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255561632	303	axonemal dynein light chain, putative [R	0.948	0.844	0.552	1e-64
225456608	272	PREDICTED: uncharacterized protein LOC10	0.844	0.838	0.534	2e-56
297734056	309	unnamed protein product [Vitis vinifera]	0.844	0.737	0.534	2e-56
359806402	259	uncharacterized protein LOC100800184 [Gl	0.851	0.888	0.482	2e-50
66796189	313	dynein light chain [Vicia faba]	0.874	0.753	0.445	2e-49
357504201	307	Dynein light chain [Medicago truncatula]	0.881	0.775	0.479	6e-49
356512742	264	PREDICTED: uncharacterized protein LOC10	0.822	0.840	0.494	6e-49
224133350	120	predicted protein [Populus trichocarpa]	0.381	0.858	0.844	5e-46
449487873	262	PREDICTED: uncharacterized protein LOC10	0.381	0.393	0.815	1e-45
449469673	290	PREDICTED: uncharacterized protein LOC10	0.381	0.355	0.815	3e-45

>gi|255561632|ref|XP_002521826.1| axonemal dynein light chain, putative [Ricinus communis] gi|223539039|gb|EEF40636.1| axonemal dynein light chain, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/284 (55%), Positives = 180/284 (63%), Gaps = 28/284 (9%)

Query: 1   MDPTLKRSNTKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIV 60
           MDPTLK+S  K      +++P   N D    SKPFY MSN  S+LN  R   R +QK   
Sbjct: 24  MDPTLKKSTKKPT----SAYPPTKNPDHLVPSKPFY-MSNPLSKLNPVR---RIAQKPTR 75

Query: 61  N--PPSKDIHLQARAMTVSADSDISRFLLNKPSKQQPQRKAKESRRTTEASKEELKKSAK 118
           N      D HLQA+AMTVSAD D S  L     K Q Q +  ESR   E+ KE      K
Sbjct: 76  NYLVDHVDTHLQAKAMTVSADFDSSSRLSIIKQKHQQQLERFESRIEKESIKEATASKDK 135

Query: 119 GGSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLEHEVKDL------KRVSVSFGRRR- 171
              + S      + E G+ +KK V   +K  K +   EVKDL      KR++VS      
Sbjct: 136 VKRLLS------NKELGVVNKKKVQENEKKKKDNRSKEVKDLIEGLDIKRMTVSLDGGVG 189

Query: 172 -----SFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALT 226
                S CGS+VELAD LA+ G KIVSVDMPPFMQIHAVDCARKT+DSLEKFT+KTLALT
Sbjct: 190 GGRRRSLCGSQVELADFLANNGAKIVSVDMPPFMQIHAVDCARKTHDSLEKFTSKTLALT 249

Query: 227 LKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           LKKEFD +YGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLY+L
Sbjct: 250 LKKEFDGIYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVL 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456608|ref|XP_002266193.1| PREDICTED: uncharacterized protein LOC100263952 [Vitis vinifera] gi|147821090|emb|CAN75380.1| hypothetical protein VITISV_027595 [Vitis vinifera]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/243 (53%), Positives = 162/243 (66%), Gaps = 15/243 (6%)

Query: 36  YYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVS-ADSDISRFLLNKPSKQQ 94
           + +SN++SR  L+      S K    PP  D  LQA+AMTVS   +D S   + KP+++ 
Sbjct: 27  HKISNHFSRHRLH-----TSLKPNNPPPRVDTRLQAKAMTVSLIGADSSNAFIIKPNRKH 81

Query: 95  PQRKAKESRRTTEASKEELKKSAKGG------SVNSLNMGAFDCEEGLESKKLVFV-KDK 147
               AK        SKE LKKS          S +  ++     +E  +  K++ V K+K
Sbjct: 82  AAPAAKMDAPPPAESKERLKKSPVKKEKEKKESQDRRDIKKLSSKEVNDINKVLKVAKEK 141

Query: 148 DVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDC 207
           + ++   H++  ++R S S GRRRSFC S+VELA  LAS GVK+VSVDMPPFMQIHAVDC
Sbjct: 142 ESQQGHGHDI--MRRPSFSLGRRRSFCCSQVELAGFLASTGVKVVSVDMPPFMQIHAVDC 199

Query: 208 ARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKL 267
           AR  YDSLEKFT+KTLA+TLKKEFD VYGPAWHCIVGTSFGSFVTHSVGGF+YF+MD KL
Sbjct: 200 ARNAYDSLEKFTSKTLAMTLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFMYFAMDHKL 259

Query: 268 YIL 270
           YIL
Sbjct: 260 YIL 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734056|emb|CBI15303.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/243 (53%), Positives = 162/243 (66%), Gaps = 15/243 (6%)

Query: 36  YYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQARAMTVS-ADSDISRFLLNKPSKQQ 94
           + +SN++SR  L+      S K    PP  D  LQA+AMTVS   +D S   + KP+++ 
Sbjct: 64  HKISNHFSRHRLH-----TSLKPNNPPPRVDTRLQAKAMTVSLIGADSSNAFIIKPNRKH 118

Query: 95  PQRKAKESRRTTEASKEELKKSAKGG------SVNSLNMGAFDCEEGLESKKLVFV-KDK 147
               AK        SKE LKKS          S +  ++     +E  +  K++ V K+K
Sbjct: 119 AAPAAKMDAPPPAESKERLKKSPVKKEKEKKESQDRRDIKKLSSKEVNDINKVLKVAKEK 178

Query: 148 DVKKDLEHEVKDLKRVSVSFGRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDC 207
           + ++   H++  ++R S S GRRRSFC S+VELA  LAS GVK+VSVDMPPFMQIHAVDC
Sbjct: 179 ESQQGHGHDI--MRRPSFSLGRRRSFCCSQVELAGFLASTGVKVVSVDMPPFMQIHAVDC 236

Query: 208 ARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKL 267
           AR  YDSLEKFT+KTLA+TLKKEFD VYGPAWHCIVGTSFGSFVTHSVGGF+YF+MD KL
Sbjct: 237 ARNAYDSLEKFTSKTLAMTLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFMYFAMDHKL 296

Query: 268 YIL 270
           YIL
Sbjct: 297 YIL 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806402|ref|NP_001241239.1| uncharacterized protein LOC100800184 [Glycine max] gi|255647301|gb|ACU24117.1| unknown [Glycine max]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 165/280 (58%), Gaps = 50/280 (17%)

Query: 5   LKRSNTKSIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPS 64
           L+R N    +    S+PT  N D  ++ KP  ++  + + LNL       SQ     PP 
Sbjct: 6   LQRRN----LAAPESNPTTPNPDLIQTYKP-SFLVKHLTNLNL-------SQPHKTRPPQ 53

Query: 65  K-----DIHLQARAMTVSADSDISRFLLNKPSKQQPQRKAKESRRTTEASKEELKKSAKG 119
           K     D HLQA+A+    +S ++   + +  K++PQR   +  R       EL      
Sbjct: 54  KHSPLIDTHLQAKAIQ-EKESSVT-VPVKRTHKEKPQRHCLKLER------REL------ 99

Query: 120 GSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLE-HEV---KDLKRVSVS-----FGRR 170
           G  N   M        +E  K+V  K K     LE H+V      +R+SVS      GRR
Sbjct: 100 GDHNDKGM--------VEDAKVV--KGKPRNPHLEKHDVVVVAAAERMSVSSLAPGGGRR 149

Query: 171 RSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKE 230
           RSFCG++  L DV A  G K+VSVDMPPFMQIHAVDCARK  DS+EKFT+KTLAL+LKKE
Sbjct: 150 RSFCGTQANLRDVFAINGAKMVSVDMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKE 209

Query: 231 FDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           FD VYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Sbjct: 210 FDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|66796189|dbj|BAD99112.1| dynein light chain [Vicia faba]

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/292 (44%), Positives = 165/292 (56%), Gaps = 56/292 (19%)

Query: 12  SIIKTKTSHPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSKDIHLQA 71
           +I     SH T+ N D  +++K   ++   +  LNL   + + SQ + V     D  L  
Sbjct: 35  TIFSPSPSHYTKANSDLIQATKS-SFLVKPFQSLNLGSKKTKHSQTKHV-----DSRLHT 88

Query: 72  RAMTVSADSDISR---------------------FLLNKPS-KQQPQRKAKESRRTTEAS 109
           ++MT SA  + S+                     FL +K + K++P +   E  R     
Sbjct: 89  KSMTTSAIFESSKPNKTHNTKNIVLTPKLEKESIFLTSKKTHKEKPLKPGSELERWKLQG 148

Query: 110 --KEELKKSAKGGSVNSLNMGAFDCEEGLESKKLVFVKDKDVKKDLEHEVKDLKRVSVSF 167
             K E K+S KG  V  +        +  +S+KL  V++ DV K+         RVSVS 
Sbjct: 149 LLKNEKKESCKGCVVEDV--------KDEKSRKLAVVEEGDVVKE---------RVSVSM 191

Query: 168 G---------RRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKF 218
           G         RR+S CGS V+L D  A  G K+VS DMPPFMQIHAVDCARK +DS+EKF
Sbjct: 192 GQSGGGGGGGRRKSLCGSMVDLGDFFAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKF 251

Query: 219 TAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           T+KTLA +LKKEFD VYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Sbjct: 252 TSKTLASSLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 303

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504201|ref|XP_003622389.1| Dynein light chain [Medicago truncatula] gi|355497404|gb|AES78607.1| Dynein light chain [Medicago truncatula]

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 128/267 (47%), Positives = 157/267 (58%), Gaps = 29/267 (10%)

Query: 20  HPTETNLDAPRSSKPFYYMSNNWSRLNLYRNEARA-SQKQIVNPPSKDIHLQARAMTVSA 78
           H  + N D  +++K   ++   +  LNL   + +  SQ + V     D  LQ ++MT SA
Sbjct: 44  HYPKPNQDLIQATKSSSFLVKPFQSLNLGSKKTKQHSQTKHV-----DSRLQGKSMTTSA 98

Query: 79  DSDISRFLLNKPSKQQPQRKA------KESRRTTEASKEELKKSAKGGSVNSLNMGAFDC 132
             D S     KP+    Q K        E       SK+ LK+       + L       
Sbjct: 99  IFDSS-----KPNNNTHQTKITVLTPNHEKESVFLHSKKTLKEKPPQKPSSELERWKL-- 151

Query: 133 EEGL--ESKKLVFVKDKDVKKDLEHEVKDLK-RVSVSFG------RRRSFCGSRVELADV 183
            +GL    KK+V V+       +E E  D+K RVSVS G      RR+S CGS ++L D 
Sbjct: 152 -QGLLKNEKKVVEVEKSRKVTVVEKEGGDVKERVSVSMGQSGGGGRRKSLCGSMIDLGDF 210

Query: 184 LASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIV 243
            A  G K+VS DMPPFMQIHAVDCARK +DS+EKFT+KTLAL+LKKEFD VYGPAWHCIV
Sbjct: 211 FAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIV 270

Query: 244 GTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           GTSFGSFVTHSVGGFLYFSMDQKLYIL
Sbjct: 271 GTSFGSFVTHSVGGFLYFSMDQKLYIL 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512742|ref|XP_003525075.1| PREDICTED: uncharacterized protein LOC100806149 [Glycine max]

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 133/269 (49%), Positives = 160/269 (59%), Gaps = 47/269 (17%)

Query: 19  SHPT--ETNLDAPRSSKPFYYMSNNWSRLNLYRNEARASQKQIVNPPSK-----DIHLQA 71
           S+PT   +N D  ++ KP  ++  + + LNL       SQ     PP K     D HLQA
Sbjct: 16  SNPTTPNSNPDLIQTYKP-SFLVKHLTNLNL-------SQTHKTRPPHKHSPLIDTHLQA 67

Query: 72  RAMTVSADSDI-SRFLLNKPSKQQPQRKAKESRRTTEASKEELKKSAKGGSVNSLNMGAF 130
           +AM  SA  +  S   + +  K++PQR   E  R             K G  N   M   
Sbjct: 68  KAMATSAIQEKESTVPVKRTHKEKPQRHCLELERR------------KLGDPNDKGM--- 112

Query: 131 DCEEGLESKKLVFVKDKDVKKDLE-HEV--KDLKRVSVSFG------RRRSFCGSRVELA 181
                +E  K+V  K K     LE H+V     +R+SVS        RRRSFCG++ +L 
Sbjct: 113 -----VEDAKVV--KGKPRNPHLEKHDVVVAAAERMSVSLAPGGGGGRRRSFCGTQADLR 165

Query: 182 DVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHC 241
           DV A  G K+VSVDMPPFMQIHAVDCARK  DS+EKFT+KTLAL+LKKEFD VYGPAWHC
Sbjct: 166 DVFAINGAKMVSVDMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHC 225

Query: 242 IVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           IVGTSFGSFVTHSVGGFLYFSMD+KLYIL
Sbjct: 226 IVGTSFGSFVTHSVGGFLYFSMDKKLYIL 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133350|ref|XP_002321545.1| predicted protein [Populus trichocarpa] gi|222868541|gb|EEF05672.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 94/103 (91%)

Query: 168 GRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTL 227
           GRRRSFCGS+VEL D LAS G KIVSVDMPPFMQIHA+ CAR T DSLEKFT++TLA TL
Sbjct: 8   GRRRSFCGSQVELTDFLASNGAKIVSVDMPPFMQIHAIRCARNTCDSLEKFTSRTLASTL 67

Query: 228 KKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           KKEFD+ YGPAWHCIVG+SFGSFVTHSVGGFLYFSMDQK+YIL
Sbjct: 68  KKEFDKTYGPAWHCIVGSSFGSFVTHSVGGFLYFSMDQKVYIL 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487873|ref|XP_004157843.1| PREDICTED: uncharacterized protein LOC101225217 [Cucumis sativus]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 95/103 (92%)

Query: 168 GRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTL 227
           GRR+SF  S+VEL+D+ A  GVK+VSVDM P MQIHAVDCARKT+DS+EKFT+KTLAL+L
Sbjct: 150 GRRKSFAVSQVELSDIFAKNGVKVVSVDMQPAMQIHAVDCARKTHDSMEKFTSKTLALSL 209

Query: 228 KKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           K+EFD VYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYIL
Sbjct: 210 KREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSLDQKLYIL 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469673|ref|XP_004152543.1| PREDICTED: uncharacterized protein LOC101220241 [Cucumis sativus]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 95/103 (92%)

Query: 168 GRRRSFCGSRVELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTL 227
           GRR+SF  S+VEL+D+ A  GVK+VSVDM P MQIHAVDCARKT+DS+EKFT+KTLAL+L
Sbjct: 178 GRRKSFAVSQVELSDIFAKNGVKVVSVDMQPAMQIHAVDCARKTHDSMEKFTSKTLALSL 237

Query: 228 KKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
           K+EFD VYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYIL
Sbjct: 238 KREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSLDQKLYIL 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
UNIPROTKB|Q4W5W8	313	vfPIP "Dynein light chain" [Vi	0.340	0.293	0.826	7.5e-42
TAIR|locus:2147725	209	AT5G20110 "AT5G20110" [Arabido	0.3	0.387	0.707	6.1e-31
TAIR|locus:2028045	129	AT1G23220 "AT1G23220" [Arabido	0.3	0.627	0.542	2.8e-18
DICTYBASE|DDB_G0274815	91	dlcB "cytoplasmic dynein light	0.296	0.879	0.439	2.3e-16
GENEDB_PFALCIPARUM|PFL0660w	93	PFL0660w "dynein light chain 1	0.325	0.946	0.423	9.8e-16
UNIPROTKB|Q8I5R9	93	PFL0660w "Dynein light chain 1	0.325	0.946	0.423	9.8e-16
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	0.285	0.865	0.481	1.1e-14
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.285	0.865	0.481	1.1e-14
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.274	0.795	0.459	1.1e-14
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.325	0.698	0.434	1.1e-14

UNIPROTKB|Q4W5W8 vfPIP "Dynein light chain" [Vicia faba (taxid:3906)]

 Score = 408 (148.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query:   179 ELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPA 238
             +L D  A  G K+VS DMPPFMQIHAVDCARK +DS+EKFT+KTLA +LKKEFD VYGPA
Sbjct:   212 DLGDFFAINGAKMVSADMPPFMQIHAVDCARKAFDSMEKFTSKTLASSLKKEFDGVYGPA 271

Query:   239 WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
             WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL
Sbjct:   272 WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 303

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147725 AT5G20110 "AT5G20110" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 58/82 (70%), Positives = 68/82 (82%)

Query:   189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFG 248
             V+I++ DMP FMQ HA  CAR T DSLEKF++K +A  LKKEFD+ YGPAWHCIVG+SFG
Sbjct:   117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query:   249 SFVTHSVGGFLYFSMDQKLYIL 270
             SFVTHS G F+YFSMD KLY+L
Sbjct:   177 SFVTHSTGCFIYFSMD-KLYVL 197

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2028045 AT1G23220 "AT1G23220" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/83 (54%), Positives = 57/83 (68%)

Query:   189 VKIVSVDMPPFMQIHAVDCARKTYDSLE-KFTAKTLALTLKKEFDEVYGPAWHCIVGTSF 247
             V++ + DMP   Q  A   +R+  ++   K   K LA  LKK+FD  YGPAWHCIVGTSF
Sbjct:    36 VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query:   248 GSFVTHSVGGFLYFSMDQKLYIL 270
             GS+VTHS GGFLYF +D K+Y+L
Sbjct:    96 GSYVTHSTGGFLYFQID-KVYVL 117

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

DICTYBASE|DDB_G0274815 dlcB "cytoplasmic dynein light chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query:   189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFG 248
             + + + DMP FMQ  A +C  K ++  E    + +A+ +KKEFD+ Y P WHCIVG SFG
Sbjct:     8 INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 65

Query:   249 SFVTHSVGGFLYFSMDQKLYIL 270
             SFVTH    F+YF++++   +L
Sbjct:    66 SFVTHETKNFIYFNINKHSVLL 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PFL0660w PFL0660w "dynein light chain 1, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/92 (42%), Positives = 57/92 (61%)

Query:   180 LADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPA 238
             +AD  ++    + +VDM   MQI A+DCA +   +L+K+   K +A  +KKEFD  Y P 
Sbjct:     1 MADRKSNKNAVVKNVDMTEEMQIDAIDCANQ---ALQKYNVEKDIAAHIKKEFDRKYDPT 57

Query:   239 WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
             WHC+VG +FGS+VTH    F+YF + Q   +L
Sbjct:    58 WHCVVGRNFGSYVTHETKNFIYFYIGQVAILL 89

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|Q8I5R9 PFL0660w "Dynein light chain 1, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/92 (42%), Positives = 57/92 (61%)

Query:   180 LADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPA 238
             +AD  ++    + +VDM   MQI A+DCA +   +L+K+   K +A  +KKEFD  Y P 
Sbjct:     1 MADRKSNKNAVVKNVDMTEEMQIDAIDCANQ---ALQKYNVEKDIAAHIKKEFDRKYDPT 57

Query:   239 WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
             WHC+VG +FGS+VTH    F+YF + Q   +L
Sbjct:    58 WHCVVGRNFGSYVTHETKNFIYFYIGQVAILL 89

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 39/81 (48%), Positives = 51/81 (62%)

Query:   191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
             I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 64

Query:   250 FVTHSVGGFLYFSMDQKLYIL 270
             +VTH    F+YF + Q   +L
Sbjct:    65 YVTHETRHFIYFYLGQVAILL 85

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 39/81 (48%), Positives = 51/81 (62%)

Query:   191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
             I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct:     8 IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64

Query:   250 FVTHSVGGFLYFSMDQKLYIL 270
             +VTH    F+YF + Q   +L
Sbjct:    65 YVTHETRHFIYFYLGQVAILL 85

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query:   190 KIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
             K+   DMP  MQ+ A+  A ++ D  + F + ++A  +KKEFDE YG  W C+VGT+FG 
Sbjct:     7 KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query:   250 FVTHSVGGFLYFSM 263
             F THS G F+YF +
Sbjct:    67 FFTHSKGTFIYFHL 80

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/92 (43%), Positives = 54/92 (58%)

Query:   180 LADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPA 238
             L D +      I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P 
Sbjct:    34 LTDNMTDRKAVIKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPT 90

Query:   239 WHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
             WHCIVG +FGS+VTH    F+YF + Q   +L
Sbjct:    91 WHCIVGRNFGSYVTHETKHFIYFYLGQVAILL 122

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	3e-32
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	4e-30
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	6e-22

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  113 bits (285), Expect = 3e-32
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSF 247
             + + DMP  MQ  A++CA    ++LEKF   K +A  +KKEFD+ YGP WHCIVG +F
Sbjct: 3   AVVKNADMPEEMQEDAIECA---AEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNF 59

Query: 248 GSFVTHSVGGFLYFSMDQKLYIL 270
           GS+VTH    F+YF + Q L  L
Sbjct: 60  GSYVTHETKHFIYFYIGQ-LAFL 81

Length = 86

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score =  109 bits (274), Expect = 4e-30
 Identities = 58/109 (53%), Positives = 69/109 (63%), Gaps = 8/109 (7%)

Query: 169 RRRSFCGSRV------ELADVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLE-KFTAK 221
           RR  F  S +      E  D      V++ + DMP  +Q  A  CAR   D++  K  +K
Sbjct: 10  RRSKFLSSLIQKKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSK 69

Query: 222 TLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYIL 270
            LAL LKKEFD  YGPAWHCIVGTSFGS+VTHS GGFLYFS+D K+YIL
Sbjct: 70  RLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID-KVYIL 117

Length = 128

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 86.8 bits (215), Expect = 6e-22
 Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 4/76 (5%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           + + DM   MQ  A+DCA +   +LEKF   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 9   VKNADMSEDMQQDAIDCANQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 65

Query: 250 FVTHSVGGFLYFSMDQ 265
           +VTH    F+YF + Q
Sbjct: 66  YVTHETKHFIYFYLGQ 81

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	99.97
PTZ00059	90	dynein light chain; Provisional	99.97
PLN03058	128	dynein light chain type 1 family protein; Provisio	99.97
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	99.96
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	92.9

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=99.97  E-value=6.1e-31  Score=208.27  Aligned_cols=85  Identities=41%  Similarity=0.771  Sum_probs=78.0

Q ss_pred             ccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEeC
Q 042217          185 ASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMD  264 (270)
Q Consensus       185 ~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~lg  264 (270)
                      ....+.|..+|||++||++|+++|.+|++.++. ++++||.+||++||++||++||||||++|||+||||+++||||++|
T Consensus         2 ~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g   80 (90)
T KOG3430|consen    2 LERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG   80 (90)
T ss_pred             CCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence            446789999999999999999999999754433 4899999999999999999999999999999999999999999999


Q ss_pred             CEEEEC
Q 042217          265 QKLYIL  270 (270)
Q Consensus       265 ~~afLL  270 (270)
                      .+++||
T Consensus        81 ~l~ill   86 (90)
T KOG3430|consen   81 VLAILL   86 (90)
T ss_pred             eEEEEE
Confidence            999886

>PTZ00059 dynein light chain; Provisional

Probab=99.97  E-value=1.8e-30  Score=203.16  Aligned_cols=84  Identities=40%  Similarity=0.772  Sum_probs=77.1

Q ss_pred             ccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEeC
Q 042217          185 ASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMD  264 (270)
Q Consensus       185 ~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~lg  264 (270)
                      ...++.|+.+|||++||++|+++|.+|++.++  ++++||.+||++||++|||+||||||++|||++||++++||||+++
T Consensus         3 ~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~--~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~   80 (90)
T PTZ00059          3 SDRKAVVKNADMSEDMQQDAIDCANQALEKFN--IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG   80 (90)
T ss_pred             CCCccEEEECCCCHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEEC
Confidence            34578899999999999999999999975432  3799999999999999999999999999999999999999999999


Q ss_pred             CEEEEC
Q 042217          265 QKLYIL  270 (270)
Q Consensus       265 ~~afLL  270 (270)
                      +.+|||
T Consensus        81 ~~~vLl   86 (90)
T PTZ00059         81 QVAILL   86 (90)
T ss_pred             CEEEEE
Confidence            999986

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=215.54  Aligned_cols=89  Identities=55%  Similarity=0.955  Sum_probs=81.9

Q ss_pred             hhhccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcC-CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEE
Q 042217          182 DVLASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKF-TAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLY  260 (270)
Q Consensus       182 ~~m~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~-~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIy  260 (270)
                      .-..+.++.|+.+|||++||++|+++|.+|++.++.+ ++++||.+||++||++|||+||||||++|||+|||++++|||
T Consensus        29 ~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIy  108 (128)
T PLN03058         29 DQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLY  108 (128)
T ss_pred             hhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEE
Confidence            3467789999999999999999999999998755433 479999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEC
Q 042217          261 FSMDQKLYIL  270 (270)
Q Consensus       261 F~lg~~afLL  270 (270)
                      |++|+.+|||
T Consensus       109 F~ig~~aiLL  118 (128)
T PLN03058        109 FSIDKVYILL  118 (128)
T ss_pred             EEECCEEEEE
Confidence            9999999986

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=99.96  E-value=1.8e-29  Score=195.13  Aligned_cols=85  Identities=41%  Similarity=0.767  Sum_probs=76.9

Q ss_pred             hccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEe
Q 042217          184 LASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSM  263 (270)
Q Consensus       184 m~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~l  263 (270)
                      |...+++|+.+||+++||++|+++|.+|++.++  ++++||++||++||++|||+||||||++|||++||++++||||++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~--~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~   78 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQ--DEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI   78 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence            566789999999999999999999999975332  489999999999999999999999999999999999999999999


Q ss_pred             CCEEEEC
Q 042217          264 DQKLYIL  270 (270)
Q Consensus       264 g~~afLL  270 (270)
                      ++..|||
T Consensus        79 ~~~~~li   85 (89)
T PF01221_consen   79 GNIAFLI   85 (89)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9999986

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=92.90  E-value=0.91  Score=34.35  Aligned_cols=50  Identities=12%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHhcccCCCceEEEEc-CCceeeEEEccCcEEEEEeCCEEEE
Q 042217          219 TAKTLALTLKKEFDEVYGPAWHCIVG-TSFGSFVTHSVGGFLYFSMDQKLYI  269 (270)
Q Consensus       219 ~eKdIAk~IKkeFDKKYGptWHCIVG-kSFGS~VTHE~~~FIyF~lg~~afL  269 (270)
                      +...+++.|...+.+.||+.|-||++ ++|... +|-...|.-+..+++.++
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~-~~~~~~~C~~~~~g~~c~   73 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYS-THTDDLYCKVEKNGVTCL   73 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeE-EecccceeeeeeCCEEEE
Confidence            46789999999999999999999999 666555 444477777788887665

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		3e-15
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		1e-14
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-14
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		2e-14
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		2e-14
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		3e-14
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		4e-14
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		5e-14
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		5e-14
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-13
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		2e-13
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-13
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-08

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 188 GVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTS 246
           G  + +VDM   MQI A+DCA +   +L+K+   K +A  +KKEFD  Y P WHC+VG +
Sbjct: 18  GSVVKNVDMTEEMQIDAIDCANQ---ALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRN 74
Query: 247 FGSFVTHSVGGFLYFSMDQKLYIL 270
           FGS+VTH    F+YF + Q   +L
Sbjct: 75  FGSYVTHETKNFIYFYIGQVAILL 98

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 10  IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 67  YVTHETRHFIYFYLGQVAILL 87

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 11  IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 68  YVTHETKHFIYFYLGQVAILL 88

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETRHFIYFYLGQVAILL 85

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 13  IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 70  YVTHETKHFIYFYLGQVAILL 90

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQ---ALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETRHFIYFYLGQVAILL 85

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTAK-TLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   +LEK+  +  +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 10  IKNADMSEEMQQDAVDCATQ---ALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 67  YVTHETRHFIYFYLGQVAILL 87

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DMP  +Q  A+DCA +   +LEK+   K +A  +KKEFD  + P WHC+VG +FGS
Sbjct: 8   IKNADMPEDLQQDAIDCANQ---ALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETHHFIYFYIGQVAVLL 85

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  +V+CA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 65  YVTHETKHFIYFYLGQVAILL 85

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           I + DM   MQ  +V+CA +   +LEK+   K +A  +KKEFD+ Y P WHCIVG +FGS
Sbjct: 4   IKNADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH    F+YF + Q   +L
Sbjct: 61  YVTHETKHFIYFYLGQVAILL 81

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTS--F 247
           I + DM   MQ  AVDCA +   ++EK+   K +A  +KKEFD+ Y P WHCIVG S  F
Sbjct: 8   IKNADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 248 GSFVTHSVGGFLYFSMDQKLYIL 270
           GS+VTH    F+YF + Q   +L
Sbjct: 65  GSYVTHETKHFIYFYLGQVAILL 87

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 213 DSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSM 263
           D+L+K+   + +A T+KK+ D  YG  WH IVG +FGS+VTH  G F+YF +
Sbjct: 35  DALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYI 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	2e-27
1yo3_A	102	Dynein light chain 1; structural genomics consorti	7e-25

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  100 bits (252), Expect = 2e-27
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 191 IVSVDMPPFMQIHAVDCARKTYDSLEKFTA-KTLALTLKKEFDEVYGPAWHCIVGTSFGS 249
           + + D+   ++   +  ++   D+L+K+   + +A T+KK+ D  YG  WH IVG +FGS
Sbjct: 16  VKASDITDKLKEDILTISK---DALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGS 72

Query: 250 FVTHSVGGFLYFSMDQKLYIL 270
           +VTH  G F+YF +    +++
Sbjct: 73  YVTHEKGHFVYFYIGPLAFLV 93

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score = 94.5 bits (235), Expect = 7e-25
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFG 248
             + +VDM   MQI A+DCA +            +A  +KKEFD  Y P WHC+VG +FG
Sbjct: 19  SVVKNVDMTEEMQIDAIDCANQALQKYNVEKD--IAAHIKKEFDRKYDPTWHCVVGRNFG 76

Query: 249 SFVTHSVGGFLYFSMDQKLYIL 270
           S+VTH    F+YF + Q   +L
Sbjct: 77  SYVTHETKNFIYFYIGQVAILL 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	99.97
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	99.97
1yo3_A	102	Dynein light chain 1; structural genomics consorti	99.97

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=99.97  E-value=1.2e-32  Score=213.97  Aligned_cols=84  Identities=42%  Similarity=0.789  Sum_probs=77.5

Q ss_pred             hccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEE
Q 042217          184 LASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFS  262 (270)
Q Consensus       184 m~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~-eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~  262 (270)
                      |...++.|+.+|||++||++|+++|.+|++   +++ +++||++||++||++|||+||||||++|||+|||++++||||+
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~---~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~   77 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALE---KYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFY   77 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHH---HCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEE
Confidence            345679999999999999999999999964   555 8999999999999999999999999999999999999999999


Q ss_pred             eCCEEEEC
Q 042217          263 MDQKLYIL  270 (270)
Q Consensus       263 lg~~afLL  270 (270)
                      +|+.+|||
T Consensus        78 ~g~~~iLl   85 (89)
T 3rjs_A           78 IGQVAVLL   85 (89)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            99999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-31  Score=211.43  Aligned_cols=83  Identities=29%  Similarity=0.592  Sum_probs=76.9

Q ss_pred             cCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEeCC
Q 042217          186 SCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFTAKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQ  265 (270)
Q Consensus       186 ~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~lg~  265 (270)
                      ..++.|+.+||+++||++|+++|.+|++.++  ++++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~--~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~   88 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQ--LERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGP   88 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETT
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECC
Confidence            4679999999999999999999999975332  38999999999999999999999999999999999999999999999


Q ss_pred             EEEEC
Q 042217          266 KLYIL  270 (270)
Q Consensus       266 ~afLL  270 (270)
                      .+|||
T Consensus        89 ~aiLl   93 (97)
T 4ds1_A           89 LAFLV   93 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=99.97  E-value=2.3e-31  Score=212.24  Aligned_cols=83  Identities=45%  Similarity=0.865  Sum_probs=76.3

Q ss_pred             ccCCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEe
Q 042217          185 ASCGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSM  263 (270)
Q Consensus       185 ~~~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~-eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~l  263 (270)
                      .+.++.|+.+||+++||++|+++|.+|++   +++ +++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus        15 ~~~~~~I~~~DM~~emq~~a~~~a~~Al~---k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~   91 (102)
T 1yo3_A           15 VPRGSVVKNVDMTEEMQIDAIDCANQALQ---KYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYI   91 (102)
T ss_dssp             ---CCCEEETTSCHHHHHHHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEE
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEE
Confidence            45678999999999999999999999975   444 89999999999999999999999999999999999999999999


Q ss_pred             CCEEEEC
Q 042217          264 DQKLYIL  270 (270)
Q Consensus       264 g~~afLL  270 (270)
                      |+.+|||
T Consensus        92 g~~aiLl   98 (102)
T 1yo3_A           92 GQVAILL   98 (102)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	2e-26

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 96.7 bits (241), Expect = 2e-26
 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 189 VKIVSVDMPPFMQIHAVDCARKTYDSLEKF-TAKTLALTLKKEFDEVYGPAWHCIVGTSF 247
             I + DM   MQ  AVDCA     +LEK+   K +A  +KKEFD+ Y P WHCIVG +F
Sbjct: 4   AVIKNADMSEEMQQDAVDCAT---QALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 60

Query: 248 GSFVTHSVGGFLYFSMDQKLYIL 270
           GS+VTH    F+YF + Q   +L
Sbjct: 61  GSYVTHETRHFIYFYLGQVAILL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	99.97

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.1e-31  Score=204.39  Aligned_cols=81  Identities=46%  Similarity=0.826  Sum_probs=76.2

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHhcccCCCceEEEEcCCceeeEEEccCcEEEEEeCC
Q 042217          187 CGVKIVSVDMPPFMQIHAVDCARKTYDSLEKFT-AKTLALTLKKEFDEVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQ  265 (270)
Q Consensus       187 ~dV~Ii~SDMpeEMQ~eAIeiAkeAlk~~eK~~-eKdIAk~IKkeFDKKYGptWHCIVGkSFGS~VTHE~~~FIyF~lg~  265 (270)
                      .++.|+.+|||++||++|+++|.+|++   +++ +++||++||++||++|||+||||||++|||++||++++||||++|+
T Consensus         2 ~k~vik~~DM~~em~~~a~~~~~~al~---~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~   78 (87)
T d3e2ba1           2 RKAVIKNADMSEEMQQDAVDCATQALE---KYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   78 (87)
T ss_dssp             CCEEEEEEEECHHHHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETT
T ss_pred             CcceEEECCCCHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECC
Confidence            467899999999999999999999965   454 8999999999999999999999999999999999999999999999


Q ss_pred             EEEEC
Q 042217          266 KLYIL  270 (270)
Q Consensus       266 ~afLL  270 (270)
                      .+|||
T Consensus        79 ~~~Ll   83 (87)
T d3e2ba1          79 VAILL   83 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996