Citrus Sinensis ID: 042223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSRVPKKIGD
cEEEEcccccHHHHHHHHHHccccEEEccccccccccccccccccccHHHHcccccccEEEEEEEEEccccEEcccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccEEEEEEEEEccHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHccHHHHEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccccccHEHcHHHHEHHHccccccccHHHHHcccccccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccc
kiecgqsgaTLGQLYYRIAERsknlgfpagvcptvgvgghfsgggygfmMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFwsirggggasFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIdrllplmqesfpelglkkedctemnwiesahslagfqkeeplhllldrnssnskgafEGIYDMFAEEEGQSAFIALIpyggkmneiseseipfpyragnIYKILYVVAwgedgasqRYINWIRKLYGymtpyvsknpreaylnyrdldsgtnnqgytsykkdsiwgkkyfknnfDRLVHVKttvdphnffrneqsipplssrvpkkigd
kiecgqsgatLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYrdldsgtnnqgytsykkdsiwgKKYFKNNFDRLVHVKTTVdphnffrneqsipplssrvpkkigd
KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVgvgghfsgggygfmmgkfgLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRggggasfgvvvaWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSRVPKKIGD
********ATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLL********GAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFF*******************
KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSI*************
KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPL**********
KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPP***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNATKIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSRVPKKIGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
A6P6W1545 Cannabidiolic acid syntha N/A no 0.954 0.658 0.501 1e-100
A6P6W0545 Cannabidiolic acid syntha N/A no 0.954 0.658 0.501 1e-100
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.946 0.653 0.502 4e-99
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.946 0.653 0.5 1e-98
A6P6V9544 Cannabidiolic acid syntha N/A no 0.944 0.652 0.497 1e-98
Q9SVG4570 Reticuline oxidase-like p no no 0.949 0.626 0.490 1e-81
P93479535 Reticuline oxidase OS=Pap N/A no 0.954 0.671 0.421 1e-70
P30986538 Reticuline oxidase OS=Esc N/A no 0.957 0.669 0.428 1e-69
O06997447 Uncharacterized FAD-linke yes no 0.888 0.747 0.269 7e-16
Q796Y5451 Uncharacterized FAD-linke no no 0.888 0.740 0.266 2e-11
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function desciption
 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/399 (50%), Positives = 269/399 (67%), Gaps = 40/399 (10%)

Query: 6   QSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHL 65
           +SGATLG++YY I E ++NL FPAG CPTVG GGHFSGGGYG +M  +GLAAD+++DAHL
Sbjct: 150 ESGATLGEVYYWINENNENLSFPAGYCPTVGTGGHFSGGGYGALMRNYGLAADNIIDAHL 209

Query: 66  IDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMK-QNA 124
           ++ +G++LDRKSMGEDLFW+IRGGGG +FG++ AWK+RLV VPS  T+F+V +NM+    
Sbjct: 210 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIRLVAVPSMSTIFSVKKNMEIHEL 269

Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRAN---------STMVAAFSSLFLGGIDRLLPLMQ 175
            K+VN+WQ IA    + L +    I  N         +T+ + FSS+F GG+D L+ LM 
Sbjct: 270 VKLVNKWQNIAYMYEKELLLFTHFITRNITDNQGKNKTTIHSYFSSIFHGGVDSLVDLMN 329

Query: 176 ESFPELGLKKEDCTEMNWIESA--------HSLAGFQKEEPLHLLLDRNSSNSKGAFEGI 227
           +SFPELG+KK DC +++WI++         ++   F+KE    +LLDR S   K AF   
Sbjct: 330 KSFPELGIKKTDCKQLSWIDTIIFYSGVVNYNTTNFKKE----ILLDR-SGGRKAAFSIK 384

Query: 228 YDMFAEEEGQSAFIALI----------------PYGGKMNEISESEIPFPYRAGNIYKIL 271
            D   +   ++A + ++                PYGG M+EISES IPFP+RAG  Y+I 
Sbjct: 385 LDYVKKPIPETAMVTILEKLYEEDVGVGMFVFYPYGGIMDEISESAIPFPHRAGITYEIW 444

Query: 272 YVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSG-TNNQGYTSYKKDS 330
           Y+ +W +   ++++INWIR +Y + TPYVS+NPR AYLNYRDLD G TN +   +Y +  
Sbjct: 445 YIASWEKQEDNEKHINWIRNVYNFTTPYVSQNPRMAYLNYRDLDLGKTNFESPNNYTQAR 504

Query: 331 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSR 369
           IWG+KYF  NF+RLV VKT VDP NFFRNEQSIPPL  R
Sbjct: 505 IWGEKYFGKNFNRLVKVKTKVDPDNFFRNEQSIPPLPLR 543
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
224122386 533 predicted protein [Populus trichocarpa] 0.965 0.681 0.620 1e-130
224122382 534 predicted protein [Populus trichocarpa] 0.965 0.679 0.631 1e-130
359483732 499 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.986 0.743 0.617 1e-129
224115242 527 predicted protein [Populus trichocarpa] 0.965 0.688 0.606 1e-129
224110866 533 predicted protein [Populus trichocarpa] 0.965 0.681 0.620 1e-129
224103509 531 predicted protein [Populus trichocarpa] 0.978 0.693 0.598 1e-128
224056829 531 predicted protein [Populus trichocarpa] 0.962 0.681 0.611 1e-128
224056831 533 predicted protein [Populus trichocarpa] 0.965 0.681 0.620 1e-128
224056789476 predicted protein [Populus trichocarpa] 0.973 0.768 0.596 1e-127
224056783 533 predicted protein [Populus trichocarpa] 0.978 0.690 0.603 1e-127
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/387 (62%), Positives = 294/387 (75%), Gaps = 24/387 (6%)

Query: 6   QSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHL 65
           Q+GATLG+LYYRIAE+S+ L FPAG CPT+GVGGHFSGGGY  +  K+GLA+D+V+DA L
Sbjct: 146 QAGATLGELYYRIAEKSRTLAFPAGSCPTIGVGGHFSGGGYSTISRKYGLASDNVIDAQL 205

Query: 66  IDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMKQNAT 125
           IDA+GR+LDR+SMGEDLFW+IRGGGG SFGVV+AW++ LV VP  VT+FT  R ++QNAT
Sbjct: 206 IDAKGRILDRESMGEDLFWAIRGGGGQSFGVVIAWRIELVEVPPKVTVFTAARTLEQNAT 265

Query: 126 KIVNEWQYIANKLHEGLFIDVVLIRAN------STMVAAFSSLFLGGIDRLLPLMQESFP 179
           K+++ WQY+AN+L E + IDV++ R N      ST+ AAF SLFLG +D+LL LMQESFP
Sbjct: 266 KLIHRWQYVANQLPEDIIIDVLVNRVNSSEEGKSTIQAAFFSLFLGEVDQLLLLMQESFP 325

Query: 180 ELGLKKEDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSN----------------SKGA 223
           ELGL K++CTEM+WIES   + GF     L++LLDR                     + A
Sbjct: 326 ELGLAKDECTEMSWIESVIYIIGFPSNASLNVLLDRTPQPPSLQFKAKSDYVQEPIPEIA 385

Query: 224 FEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDG--A 281
           FEGI+  F E++ +     +IPYGGKM+EISES  PFP+RAGN Y  + VV+W E+   A
Sbjct: 386 FEGIWKRFFEKDIEVPVFFMIPYGGKMDEISESSTPFPHRAGNRYIFVPVVSWSEETKEA 445

Query: 282 SQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNF 341
           SQR++ WIR+LY YMTPYVSKNPR AY+NYRDLD G NN GYTSYK+ SIWG+KYFKNNF
Sbjct: 446 SQRHLAWIRRLYRYMTPYVSKNPRAAYVNYRDLDLGVNNLGYTSYKQASIWGRKYFKNNF 505

Query: 342 DRLVHVKTTVDPHNFFRNEQSIPPLSS 368
           DRLV VKT VDP NFFRNEQSIPPLSS
Sbjct: 506 DRLVRVKTEVDPTNFFRNEQSIPPLSS 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483732|ref|XP_003633008.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056829|ref|XP_002299044.1| predicted protein [Populus trichocarpa] gi|222846302|gb|EEE83849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056789|ref|XP_002299024.1| predicted protein [Populus trichocarpa] gi|222846282|gb|EEE83829.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056783|ref|XP_002299021.1| predicted protein [Populus trichocarpa] gi|222846279|gb|EEE83826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.957 0.676 0.429 2.2e-82
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.949 0.671 0.459 2e-81
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.819 0.575 0.422 1.2e-67
TAIR|locus:2044747540 AT2G34810 [Arabidopsis thalian 0.569 0.396 0.398 2e-65
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.965 0.688 0.366 4e-58
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.728 0.514 0.432 6.6e-58
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.571 0.397 0.484 3e-53
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.571 0.400 0.480 2.7e-52
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.547 0.387 0.482 5.8e-50
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.571 0.405 0.455 2.5e-49
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 162/377 (42%), Positives = 237/377 (62%)

Query:     6 QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
             Q+GAT+G+LYY I ++++ L FPAGVCPTV                   LAADHV+DA +
Sbjct:   153 QTGATIGELYYEIGKKNRTLAFPAGVCPTVGVGGHFSGGGYGTLLRKHGLAADHVIDARV 212

Query:    66 IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMKQNAT 125
             +DA GR+L+R+ MGED FW+IR            WK+ L+ VPSTVT+F V +  +Q+A 
Sbjct:   213 VDARGRILERREMGEDFFWAIRGGGGSSFCVVLSWKIGLINVPSTVTVFNVTKFSEQSAL 272

Query:   126 KIVNEWQYIANKLHEGLFIDVVLIRANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKK 185
             KI++ WQ++A+K+ + LFI V+L R  + + A+F  L+LG +  LL ++ + FPELGL++
Sbjct:   273 KIIHRWQFVADKVSDDLFIRVMLQRYKNMVRASFPGLYLGSVKNLLKMVNKEFPELGLEE 332

Query:   186 EDCTEMNWIESAHSLAGFQKEEPLHLLLDRNSSN--------------SKGAFEGIYDMF 231
             +DCTEM+WIES    A    EEP+++L  R  ++               K A   ++   
Sbjct:   333 DDCTEMSWIESVIWFAELG-EEPINVLTKRTRASLAFKAKSDFVQEPMPKTAISKLWRRL 391

Query:   232 AEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRK 291
              E E + A +   P+GGKM+EI++ E PFP+R GNIY+I Y+  W  D   ++Y+ W+ +
Sbjct:   392 QEPEAEHAQLIFTPFGGKMSEIADYETPFPHRKGNIYEIQYLNYWRGD-VKEKYMRWVER 450

Query:   292 LYGYMTPYVSKNPREAYLNYRDLDSGTN-NQGYTSYKKDSIWGKKYFKNNFDRLVHVKTT 350
             +Y  M+ +V+K+PR AY+N RDLD G       + Y++   WG KYFKNNF+RLV VKT+
Sbjct:   451 VYDDMSEFVAKSPRGAYINLRDLDLGMYVGVKRSKYEEGKSWGVKYFKNNFERLVRVKTS 510

Query:   351 VDPHNFFRNEQSIPPLS 367
             VDP +FF +EQSIPP +
Sbjct:   511 VDPSDFFCDEQSIPPFT 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044747 AT2G34810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
pfam0803145 pfam08031, BBE, Berberine and berberine like 4e-17
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-12
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 8e-12
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information 
 Score = 74.1 bits (183), Expect = 4e-17
 Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 13/58 (22%)

Query: 307 AYLNYRDLDSGTNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIP 364
           AY+NY DLD G              WG+ YF  N++RL  VK   DP N FRNEQSIP
Sbjct: 1   AYVNYPDLDLG-------------DWGEAYFGGNYERLRKVKAKYDPDNVFRNEQSIP 45

This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. Length = 45
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
PLN02441525 cytokinin dehydrogenase 99.96
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.94
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.91
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.9
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.9
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.9
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.88
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.85
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.84
KOG1231505 consensus Proteins containing the FAD binding doma 99.83
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.8
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.7
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.66
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.46
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.41
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.39
KOG1232511 consensus Proteins containing the FAD binding doma 99.32
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.01
PRK11183564 D-lactate dehydrogenase; Provisional 99.01
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.99
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.85
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 98.79
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.62
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.62
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.6
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.31
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.46
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.7
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.56
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 96.4
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 95.85
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 95.84
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 95.75
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 94.5
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 93.88
PLN00107257 FAD-dependent oxidoreductase; Provisional 93.69
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 92.49
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 83.24
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=99.96  E-value=5e-27  Score=234.53  Aligned_cols=117  Identities=17%  Similarity=0.260  Sum_probs=102.3

Q ss_pred             CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCCC
Q 042223            1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMG   79 (376)
Q Consensus         1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~   79 (376)
                      ++|+|++|++|.||++++.++|+- ....+.+..+++||.+.++|+|-.+.+||..+|||+++||||+||++++ ++++|
T Consensus       136 ~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n  214 (525)
T PLN02441        136 PYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQN  214 (525)
T ss_pred             CEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCC
Confidence            478999999999999999998742 2234667788999999999999999999999999999999999999998 88899


Q ss_pred             cchhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEec
Q 042223           80 EDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRN  119 (376)
Q Consensus        80 ~dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~  119 (376)
                      +|||||+||| +|+|||||++++|++|+|+.+..+.+.+.
T Consensus       215 ~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~  253 (525)
T PLN02441        215 SDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS  253 (525)
T ss_pred             hhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence            9999999998 68999999999999999986544444443

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 4e-91
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 7e-78
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 3e-74
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-66
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 2e-66
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-66
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-66
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 2e-66
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-65
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-65
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 4e-12
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 3e-11
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 8e-08
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 1e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 178/396 (44%), Positives = 241/396 (60%), Gaps = 40/396 (10%)
Query: 6   QSGATLGQLYYRIAERSKNLGFPAGVCPTVXXXXXXXXXXXXXXXXXXXLAADHVVDAHL 65
           ++GATLG++YY I E+++NL FP G CPTV                   LAAD+++DAHL
Sbjct: 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHL 182
Query: 66  IDAEGRLLDRKSMGEDLFWSIRXXXXXXXXXXXXWKVRLVTVPSTVTLFTVIRNMK-QNA 124
           ++ +G++LDRKSMGEDLFW+IR            WK++LV VPS  T+F+V +NM+    
Sbjct: 183 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL 242
Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRAN---------STMVAAFSSLFLGGIDRLLPLMQ 175
            K+ N+WQ IA K  + L +    I  N         +T+   FSS+F GG+D L+ LM 
Sbjct: 243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 176 ESFPELGLKKEDCTEMNWIESA--------HSLAGFQKEEPLHLLLDRNSSNSKGAFE-- 225
           +SFPELG+KK DC E +WI++          + A F+KE    +LLDR S+  K AF   
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKE----ILLDR-SAGKKTAFSIK 357
Query: 226 --------------GIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKIL 271
                          I +   EE+  +    L PYGG M EISES IPFP+RAG +Y++ 
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 272 YVVAWGEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSG-TNNQGYTSYKKDS 330
           Y  +W +   ++++INW+R +Y + TPYVS+NPR AYLNYRDLD G TN+    +Y +  
Sbjct: 418 YTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477
Query: 331 IWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPL 366
           IWG+KYF  NF+RLV VKT VDP+NFFRNEQSIPPL
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-146
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-145
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-130
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-128
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-122
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-122
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-120
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-117
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 8e-87
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 8e-30
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-23
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-10
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-08
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  422 bits (1086), Expect = e-146
 Identities = 192/394 (48%), Positives = 260/394 (65%), Gaps = 30/394 (7%)

Query: 6   QSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHL 65
           ++GATLG++YY I E+++NL FP G CPTVGVGGHFSGGGYG +M  +GLAAD+++DAHL
Sbjct: 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHL 182

Query: 66  IDAEGRLLDRKSMGEDLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMK-QNA 124
           ++ +G++LDRKSMGEDLFW+IRGGGG +FG++ AWK++LV VPS  T+F+V +NM+    
Sbjct: 183 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL 242

Query: 125 TKIVNEWQYIANKLHEGLFIDVVLIRAN---------STMVAAFSSLFLGGIDRLLPLMQ 175
            K+ N+WQ IA K  + L +    I  N         +T+   FSS+F GG+D L+ LM 
Sbjct: 243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302

Query: 176 ESFPELGLKKEDCTEMNWIESAHSLAGFQK----EEPLHLLLDRNSSN------------ 219
           +SFPELG+KK DC E +WI++    +G            +LLDR++              
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVK 362

Query: 220 ---SKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAW 276
               + A   I +   EE+  +    L PYGG M EISES IPFP+RAG +Y++ Y  +W
Sbjct: 363 KPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASW 422

Query: 277 GEDGASQRYINWIRKLYGYMTPYVSKNPREAYLNYRDLDSGTNNQ-GYTSYKKDSIWGKK 335
            +   ++++INW+R +Y + TPYVS+NPR AYLNYRDLD G  N     +Y +  IWG+K
Sbjct: 423 EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEK 482

Query: 336 YFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSSR 369
           YF  NF+RLV VKT VDP+NFFRNEQSIPPL   
Sbjct: 483 YFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH 516
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.97
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.92
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.92
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.9
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.9
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.89
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.89
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.89
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.84
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.83
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.67
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.66
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.65
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.43
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.41
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.28
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.24
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.22
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 92.37
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.6e-68  Score=536.95  Aligned_cols=368  Identities=51%  Similarity=0.962  Sum_probs=305.5

Q ss_pred             CeEEEcCCCcHHHHHHHHHHcCCceeccCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEecCCCCc
Q 042223            1 KIECGQSGATLGQLYYRIAERSKNLGFPAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLDRKSMGE   80 (376)
Q Consensus         1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~~~~~~~   80 (376)
                      ++|+||+|+++++|+++|.++|+++.+++|.|++|||||+++|||+|+++++||+++|||+++|||++||++++.+.+|+
T Consensus       118 ~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~  197 (518)
T 3vte_A          118 QTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGE  197 (518)
T ss_dssp             TEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCH
T ss_pred             CEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeecccc
Confidence            47999999999999999999987788999999999999999999999999999999999999999999999997444689


Q ss_pred             chhhhhhcCCCCCeeEEEEEEEEEeecCceEEEEEEEeccc-hhHHHHHHHHHHHHhhcCCCceEEEEEec---------
Q 042223           81 DLFWSIRGGGGASFGVVVAWKVRLVTVPSTVTLFTVIRNMK-QNATKIVNEWQYIANKLHEGLFIDVVLIR---------  150 (376)
Q Consensus        81 dLfwalrG~Gg~~fGvVt~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  150 (376)
                      |||||+||||+|+|||||+++||++|.|+.++.|.+.+.++ +++.+++.+|+++.+.+|+++++.+.+..         
T Consensus       198 DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~  277 (518)
T 3vte_A          198 DLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGK  277 (518)
T ss_dssp             HHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-----
T ss_pred             chhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCc
Confidence            99999999877899999999999999998777777776654 45778999999999999999998877652         


Q ss_pred             CCCeeEEEEEEEEeCCccCchhhhhccCcccCCCcccceecchHHHHHhhcCCCCC-Cc-------------ccccc-cC
Q 042223          151 ANSTMVAAFSSLFLGGIDRLLPLMQESFPELGLKKEDCTEMNWIESAHSLAGFQKE-EP-------------LHLLL-DR  215 (376)
Q Consensus       151 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~-------------~~~~~-~~  215 (376)
                      ....+.+.+.++|.|+.+++.+.+.+.|++++.....+.+++|++...+++.++.+ .+             ...++ .+
T Consensus       278 ~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~k  357 (518)
T 3vte_A          278 NKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIK  357 (518)
T ss_dssp             --CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEE
T ss_pred             CCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhhccCCcCcccceeee
Confidence            11235677888999999998888877777777666678899999987766543321 11             01111 11


Q ss_pred             C----CCCCHHHHHHHHHHHHhccCCceEEEEEecCCCCCCCCCCCCCCcccCCceEEEEEEEEeCCCCchhHHHHHHHH
Q 042223          216 N----SSNSKGAFEGIYDMFAEEEGQSAFIALIPYGGKMNEISESEIPFPYRAGNIYKILYVVAWGEDGASQRYINWIRK  291 (376)
Q Consensus       216 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ta~~~R~~~~~~~~~~~~w~~~~~~~~~~~~~~~  291 (376)
                      +    ..+++++++.+++.+.+.+...+.+.+.++||+++++++++|||+||++..|.+++...|.+++.+++..+|+++
T Consensus       358 s~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~~  437 (518)
T 3vte_A          358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRS  437 (518)
T ss_dssp             EEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHHH
T ss_pred             chhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcchhHHHHHHHHH
Confidence            1    135899999999988654333578899999999999999999999998448999999999888888899999999


Q ss_pred             HHhccccCCCCCCCceeccCCCCCCC-CCCCCCCcccccchhhhhhhhhcHHHHHHhHhccCCCCCCCCCCCCCCCCC
Q 042223          292 LYGYMTPYVSKNPREAYLNYRDLDSG-TNNQGYTSYKKDSIWGKKYFKNNFDRLVHVKTTVDPHNFFRNEQSIPPLSS  368 (376)
Q Consensus       292 ~~~~l~~~~~~~~~g~Y~N~~d~~~~-~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~nvF~~~~~I~p~~~  368 (376)
                      +++.|.||.+..+.|+|+||.|.+++ .+....++|+.+..|++.|||+||+||++||+||||+|+|+++|+|+|.++
T Consensus       438 ~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          438 VYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            99999999765567999999997765 211123444555679999999999999999999999999999999999876
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-06
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 30  GVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSMGEDLFWSIRG 88
                + VGG  S  G      + G    +V++  +I   G ++   K +  DLF ++ G
Sbjct: 129 TDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLG 188

Query: 89  GGGASFGVVVAWKVRLV 105
           G G  FGV+   ++ + 
Sbjct: 189 GLG-QFGVITRARIAVE 204

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.91
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.79
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.73
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.66
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.64
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.62
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 98.23
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 95.04
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 94.23
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 92.63
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 92.21
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.91  E-value=5.3e-25  Score=194.48  Aligned_cols=104  Identities=18%  Similarity=0.244  Sum_probs=95.3

Q ss_pred             CeEEEcCCCcHHHHHHHHHHcCCceec-cCCCCCcccccccccCCCCCccccccccccccEeEEEEEcCCCcEEe-cCCC
Q 042223            1 KIECGQSGATLGQLYYRIAERSKNLGF-PAGVCPTVGVGGHFSGGGYGFMMGKFGLAADHVVDAHLIDAEGRLLD-RKSM   78 (376)
Q Consensus         1 ~~~~v~~G~~~~~v~~~l~~~~~~~~~-~~g~~~~vgvgG~~lggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~   78 (376)
                      ++|+||+|+++.||+++|.++|+  .+ ..+.+..+++||+++++|+|..+++||+.+|+|+++|||++||++++ ++.+
T Consensus       101 ~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~~~  178 (206)
T d1w1oa2         101 RYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL  178 (206)
T ss_dssp             SEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECCCC
Confidence            47999999999999999999874  33 35666778899999999999999999999999999999999999998 7888


Q ss_pred             CcchhhhhhcCCCCCeeEEEEEEEEEeec
Q 042223           79 GEDLFWSIRGGGGASFGVVVAWKVRLVTV  107 (376)
Q Consensus        79 ~~dLfwalrG~Gg~~fGvVt~~~~~~~p~  107 (376)
                      |+|||||+||+ +|+|||||+++||++|+
T Consensus       179 ~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         179 NADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             CHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            99999999999 68999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure