Citrus Sinensis ID: 042227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFEHGTRIHYWILDFLWSFENQKLLEKCPILSSSMK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccHHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEEEccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccEccEEEccHHHHHcccccEEEccccEEEccccHHHHHccccEEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccc
Coil and Loop (DISEMBL)
lsrsllngtippsmsemknfsfldlsnnilsgeipsnwEGLEELMVKDlsnnslsggipasfcslpsLVWLKLSKNDLSGELFVALQnctaftgfpefitepsgripenigslqkletldlssnhlsgpippsmssmtrlslnlsyndltgpipltkqfqtfndpsiymgnadlcspplttkcssdlrnagvedgevededgSEELLFLFEHGTRIHYWILDFLWSFenqkllekcpilsssmk
Flexible Loop (DISEMBL)
lsrsllngtippsmseMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVedgevededGSEELLFLFEHGTRIHYWILDFLWSFENQKLLekcpilsssmk
Low Complexity Region (SEG)
LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAgvedgevededgseeLLFLFEHGTRIHYWILDFLWSFENQKLLEKCPILSSSMK
Disordered region (IsUnstruct)
*******************FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITE****************************************LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS****************************ELLFLFEHGTRIHYWILDFLWSFENQKLLEKCPI******
Disordered Region (DISOPRED)
LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL**************************LLFLFEHGTRIHYWILDFLWSFENQKLLEKCPILSS*M*
Disordered Region (DISEMBL)
LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAG***********SEELLFLFEHGTRIHYWILDFLWSFENQKLLEKCPILSSSMK
Disordered Region (DISPRO)
**RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFEHGTRIHYWILDFLWSFENQKLLEKCPI******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFEHGTRIHYWILDFLWSFENQKLLEKCPILSSSMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
C0LGE4	882	Probable LRR receptor-lik	yes	no	0.733	0.202	0.397	4e-24
O22938	890	Leucine-rich repeat recep	no	no	0.733	0.201	0.365	3e-22
Q9SCT4	836	Probably inactive leucine	no	no	0.733	0.214	0.370	5e-22
Q00874	372	DNA-damage-repair/tolerat	no	no	0.610	0.400	0.406	1e-21
Q9LRT1	1016	Probably inactive leucine	no	no	0.75	0.180	0.356	4e-21
O49545	1003	Leucine-rich repeat recep	no	no	0.762	0.185	0.374	7e-21
C0LGX3	993	LRR receptor-like serine/	no	no	0.704	0.173	0.385	2e-20
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.741	0.173	0.357	5e-20
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.631	0.143	0.385	7e-20
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.766	0.156	0.359	1e-19

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           LNG+IP S+ +M++ S + L NN + G IP +   LE L V +L N +L G +P    + 
Sbjct: 320 LNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPEDISNC 379

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
             L+ L +S NDL G++   L N T            +G IP  +G+L K++ LDLS N 
Sbjct: 380 RVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNS 439

Query: 126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCS 184
           LSGPIP S+ S+  L+  N+SYN+L+G IP     Q F   S +  N  LC  PL T C+
Sbjct: 440 LSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGS-SAFSNNPFLCGDPLVTPCN 498

Query: 185 S 185
           S
Sbjct: 499 S 499

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 105/208 (50%), Gaps = 29/208 (13%)

Query: 8   GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           GTIP  + ++ N   L LS N L GEIP ++ G   L   DLSNN L+G IP   CS+P 
Sbjct: 316 GTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPR 375

Query: 68  LVWLKLSKNDLSGELFVALQNCTA----------FTGF--PEF-------------ITEP 102
           L +L L +N + G++   + NC             TG   PE                  
Sbjct: 376 LQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHL 435

Query: 103 SGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQT 161
            G +P  +G L KL +LD+S+N L+G IPP +  M  L  +N S N L GP+P+   FQ 
Sbjct: 436 HGSLPPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQK 495

Query: 162 FNDPSIYMGNADLCSPPLTTKC--SSDL 187
             + S ++GN +LC  PL++ C  S DL
Sbjct: 496 SPNSS-FLGNKELCGAPLSSSCGYSEDL 522

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 7/186 (3%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  +  +G +P S+ +      + +S+N LSG IP    GL  L   D S NS++G IP 
Sbjct: 246 LDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRECGGLPHLQSLDFSYNSINGTIPD 305

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           SF +L SLV L L  N L G +  A+      T       + +G IPE IG++  ++ LD
Sbjct: 306 SFSNLSSLVSLNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISGIKKLD 365

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP--LTKQFQTFNDPSIYMGNADLCSP 177
           LS N+ +GPIP S+  + +L S N+SYN L+GP+P  L+K+F +    S ++GN  LC  
Sbjct: 366 LSENNFTGPIPLSLVHLAKLSSFNVSYNTLSGPVPPVLSKKFNS----SSFLGNIQLCGY 421

Query: 178 PLTTKC 183
             +  C
Sbjct: 422 SSSNPC 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           + G IPP ++ + +   LDL+ N ++GEIP+    L +L V +L+ N +SG IPAS  SL
Sbjct: 123 ITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSL 182

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
             L  L+L++N ++G +     +    +       E +G IPE+I  +++L  LDLS NH
Sbjct: 183 IELKHLELTENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNH 242

Query: 126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
           + GPIP  M +M  LS LNL  N LTGPIP
Sbjct: 243 IEGPIPEWMGNMKVLSLLNLDCNSLTGPIP 272

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 2/185 (1%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L G+IP  +    +  +L+LS N  +  +P   E L+ L V DL N++L G +PA
Sbjct: 422 LSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPA 481

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
             C   SL  L+L  N L+G +   + NC++           +G IP+++ +LQ+L+ L 
Sbjct: 482 DICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILK 541

Query: 121 LSSNHLSGPIPPSMSSMTRLSL-NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
           L +N LSG IP  +  +  L L N+S+N L G +PL   FQ+  D S   GN  +CSP L
Sbjct: 542 LEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSL-DQSAIQGNLGICSPLL 600

Query: 180 TTKCS 184
              C+
Sbjct: 601 RGPCT 605

Arabidopsis thaliana (taxid: 3702)

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 100/195 (51%), Gaps = 9/195 (4%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP---SNWEGLEELMVKDLSNNSLSGG 57
           L  + L+G +P +     N   + LSNN LSG +P    N+ G+++L+   L  N   G 
Sbjct: 438 LQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLL---LDGNKFQGP 494

Query: 58  IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE 117
           IP+    L  L  +  S N  SG +   +  C   T       E SG IP  I +++ L 
Sbjct: 495 IPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILN 554

Query: 118 TLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS 176
            L+LS NHL G IP S+SSM  L SL+ SYN+L+G +P T QF  FN  S ++GN DLC 
Sbjct: 555 YLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTS-FLGNPDLCG 613

Query: 177 PPLTTKCSSDLRNAG 191
           P L   C   +   G
Sbjct: 614 PYL-GPCKDGVAKGG 627

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 2/174 (1%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L G+IPPS+S+ ++ S L++S N  SG IP     L +L V DLS NS  G IP+    L
Sbjct: 447 LQGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKL 506

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
            +L  +++ +N L GE+  ++ +CT  T          G IP  +G L  L  LDLS+N 
Sbjct: 507 KNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQ 566

Query: 126 LSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
           L+G IP  +  +     N+S N L G IP   Q   F  PS ++GN +LC+P L
Sbjct: 567 LTGEIPAELLRLKLNQFNVSDNKLYGKIPSGFQQDIFR-PS-FLGNPNLCAPNL 618

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 98/207 (47%), Gaps = 26/207 (12%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNN------------------------ILSGEIPS 36
           LS + + G IPP +  M   S LDLS+N                         LSG+IPS
Sbjct: 485 LSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPS 544

Query: 37  NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP 96
               L  L   DLS+N  S  IP +  +LP L ++ LS+NDL   +   L   +      
Sbjct: 545 GIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLD 604

Query: 97  EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155
               +  G I     SLQ LE LDLS N+LSG IPPS   M  L+ +++S+N+L GPIP 
Sbjct: 605 LSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPD 664

Query: 156 TKQFQTFNDPSIYMGNADLCSPPLTTK 182
              F+    P  + GN DLC    TT+
Sbjct: 665 NAAFRN-APPDAFEGNKDLCGSVNTTQ 690

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 7/161 (4%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G IP  + E++N  FLDL  N  SG +P     +  L + D+ NN ++G IPA   +L
Sbjct: 464 LSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDIPAQLGNL 523

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
            +L  L LS+N  +G + ++  N +            +G+IP++I +LQKL  LDLS N 
Sbjct: 524 VNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTLLDLSYNS 583

Query: 126 LSGPIPPSMSSMTRLSLN--LSYNDLTGPIPLTKQFQTFND 164
           LSG IP  +  +T L++N  LSYN  TG IP     +TF+D
Sbjct: 584 LSGEIPQELGQVTSLTINLDLSYNTFTGNIP-----ETFSD 619

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 108/220 (49%), Gaps = 33/220 (15%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L+G IP S+S + N + LDLS N L+G IP       +L   +L+NN L+G IP 
Sbjct: 611 LSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPE 670

Query: 61  SFCSLPSLVWLKLSK------------------------NDLSGELFVALQNCTAFTGFP 96
           SF  L SLV L L+K                        N+LSGEL   L       G  
Sbjct: 671 SFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLY 730

Query: 97  EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL 155
               + +G IP  +G+L +LE LD+S N LSG IP  +  +  L  LNL+ N+L G +P 
Sbjct: 731 IEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Query: 156 TKQFQTFNDPS--IYMGNADLCSPPLTTKCS---SDLRNA 190
               Q   DPS  +  GN +LC   + + C    + LR+A
Sbjct: 791 DGVCQ---DPSKALLSGNKELCGRVVGSDCKIEGTKLRSA 827

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
357447003	819	LRR receptor-like serine/threonine-prote	0.901	0.268	0.357	2e-31
224100031	258	predicted protein [Populus trichocarpa]	0.790	0.748	0.420	3e-31
359496701	904	PREDICTED: LRR receptor-like serine/thre	0.836	0.225	0.386	1e-30
147770493	1024	hypothetical protein VITISV_019847 [Viti	0.856	0.204	0.390	2e-30
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.836	0.202	0.390	3e-30
359496388	1014	PREDICTED: brassinosteroid LRR receptor	0.836	0.201	0.390	4e-30
359496785	916	PREDICTED: leucine-rich repeat receptor	0.815	0.217	0.390	4e-30
359488641	1012	PREDICTED: LRR receptor-like serine/thre	0.844	0.203	0.397	5e-30
359496699	1007	PREDICTED: LRR receptor-like serine/thre	0.836	0.202	0.399	6e-30
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.836	0.201	0.386	7e-30

>gi|357447003|ref|XP_003593777.1| LRR receptor-like serine/threonine-protein kinase GSO1 [Medicago truncatula] gi|355482825|gb|AES64028.1| LRR receptor-like serine/threonine-protein kinase GSO1 [Medicago truncatula]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 141/305 (46%), Gaps = 85/305 (27%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSN--------- 51
           LS + LNG IP S++ ++N  +LDLS N L+GEIP  W G+  L + DLSN         
Sbjct: 486 LSNNYLNGRIPLSLNRIQNLIYLDLSKNYLTGEIPEFWMGMHMLQIIDLSNNSLSGEIPT 545

Query: 52  ----------------------------------------NSLSGGIPASFCSLPSLVWL 71
                                                   N+++G IP   C LP L  L
Sbjct: 546 SICSLRLLFILELINNRFLGSIPNEITKNLLLLAELLLRGNAITGSIPEEPCHLPFLHLL 605

Query: 72  KL----------------------------SKNDLSGELFVALQNCTAFTGFPEFITEPS 103
            L                            SKN+LSGE+   +              + +
Sbjct: 606 DLAEKHIELVLKGRITEYLNQSPVHSIIDLSKNNLSGEIPEKIAQLIHLGALNLSWNQLT 665

Query: 104 GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTF 162
           G IP NIGSL  LE+LDLS NH+SG IPPSM+S+T LS LNLSYN+L+G IP+  QF TF
Sbjct: 666 GNIPNNIGSLTNLESLDLSHNHISGSIPPSMASITFLSLLNLSYNNLSGQIPVANQFGTF 725

Query: 163 NDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVE---DEDGSEELLFLFEH---GTRI 216
           N+ S Y+GNA LC  PL T CSS L   G +D + +   D D   E L L+     G   
Sbjct: 726 NELS-YVGNAGLCGHPLPTNCSSMLPGNGEQDRKHKDGVDGDDDNERLGLYASIAIGYIT 784

Query: 217 HYWIL 221
            +WI+
Sbjct: 785 GFWIV 789

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100031|ref|XP_002311717.1| predicted protein [Populus trichocarpa] gi|222851537|gb|EEE89084.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 26/219 (11%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           +S++ LNG+IPPSMS M + SFL LS+N LSG +P+NW+ L+ L V DLS N+LSG IP+
Sbjct: 9   ISQNFLNGSIPPSMSRMASLSFLHLSSNHLSGALPTNWQALQGLTVIDLSCNNLSGRIPS 68

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           S    PSL WLKL  N+L                   +     GR+ E    +  +  +D
Sbjct: 69  SMWLSPSLTWLKLRNNNL-------------------YELNAEGRLVEYTSIISVVNIID 109

Query: 121 LSSNHLSGPIPPSMSSM-TRLSLNLSYNDLTGPIP-LTKQFQTFNDPSIYMGNADLCSPP 178
           LS N+LSG +P  ++++ T ++L+LS+N LTG IP   + F TFNDPSIY GN  L  PP
Sbjct: 110 LSCNNLSGVMPEEITNLSTLVTLDLSWNQLTGMIPEKLEAFHTFNDPSIYEGNPYLRGPP 169

Query: 179 LTTKCSSDLRN---AGVEDGEVEDEDGSEELLFLFEHGT 214
           L   C  D+ N   AG +  + + ED  E L F    G+
Sbjct: 170 LPIMC--DITNNGKAGFKRYKEKGEDDPENLWFYMGMGS 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496701|ref|XP_003635305.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like, partial [Vitis vinifera]

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 125/238 (52%), Gaps = 34/238 (14%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + L+G +P  + EM++   L L +N   G IPS    L  L + DL++N+LSG +P+
Sbjct: 600 LGDNRLSGNLPTWIGEMQSLLILRLRSNFFDGNIPSQVCNLSHLHILDLAHNNLSGSVPS 659

Query: 61  SFCSLPSLVW-------------------------------LKLSKNDLSGELFVALQNC 89
              +L  +                                 + LS N+LSG+L   ++N 
Sbjct: 660 CLGNLSGMATEISDERYEGRLSVVVKGRELIYQSTLYLVNSIDLSDNNLSGKL-PEIRNL 718

Query: 90  TAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148
           +        I   +G IPE+IG L +LETLDLS N LSGPIPPSM+S+T L+ LNLSYN 
Sbjct: 719 SRLGTLNLSINHFTGNIPEDIGGLSQLETLDLSRNQLSGPIPPSMTSLTSLNHLNLSYNS 778

Query: 149 LTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEEL 206
           L+G IP + QFQTFNDPSIY  N  LC  PL  KC  D + A  +     +ED  +E 
Sbjct: 779 LSGKIPTSNQFQTFNDPSIYRNNLALCGDPLPMKCPGDDK-ATTDSSRAGNEDHDDEF 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770493|emb|CAN78141.1| hypothetical protein VITISV_019847 [Vitis vinifera]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 127/243 (52%), Gaps = 34/243 (13%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + L+G +P  + EM++   L L +N+  G IPS    L  L + DL++N+LSG +P+
Sbjct: 724 LGDNRLSGNLPSWIGEMQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPS 783

Query: 61  SFCSLPSLVW-------------------------------LKLSKNDLSGELFVALQNC 89
              +L  +                                 + LS N++SG+L   L+N 
Sbjct: 784 CLGNLSGMATEISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKL-PELRNL 842

Query: 90  TAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148
           +        I   +G IPE+ GSL +LETLDLS N LSG IPPSM SMT L+ LNLSYN 
Sbjct: 843 SRLGTLNLSINHLTGNIPEDXGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNR 902

Query: 149 LTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLF 208
           L+G IP + QFQTFNDPSIY  N  LC  PL  KC  D   A  +   V++ED  +E   
Sbjct: 903 LSGKIPTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGD-DEATTDSSGVDNEDHDDEHED 961

Query: 209 LFE 211
            FE
Sbjct: 962 AFE 964

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 34/238 (14%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G +P  + EM++   L L +N+  G IPS    L  L + DL++N+LSG +P+   +L
Sbjct: 712 LSGNLPSWIGEMQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPSCLGNL 771

Query: 66  PSLVW-------------------------------LKLSKNDLSGELFVALQNCTAFTG 94
             +                                 + LS N++SG+L   L+N +    
Sbjct: 772 SGMATEISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKL-PELRNLSRLGT 830

Query: 95  FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153
               I   +G IPE++GSL +LETLDLS N LSG IPPSM SMT L+ LNLSYN L+G I
Sbjct: 831 LNLSINHLTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNRLSGKI 890

Query: 154 PLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFE 211
           P + QFQTFNDPSIY  N  LC  PL   C  D   A  +   V++ED  +E    FE
Sbjct: 891 PTSNQFQTFNDPSIYRNNLALCGEPLAMTCPGD-DEATTDSSGVDNEDHDDEHEDAFE 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496388|ref|XP_003635224.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 34/238 (14%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G +P  + EM++   L L +N+  G IPS    L  L + DL++N+LSG +P+   +L
Sbjct: 711 LSGNLPSWIGEMQSLLILRLRSNLFDGNIPSQVCSLSHLHILDLAHNNLSGSVPSCLGNL 770

Query: 66  PSLVW-------------------------------LKLSKNDLSGELFVALQNCTAFTG 94
             +                                 + LS N++SG+L   L+N +    
Sbjct: 771 SGMATEISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKL-PELRNLSRLGT 829

Query: 95  FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153
                   +G IPE++GSL +LETLDLS N LSG IPPSM SMT L+ LNLSYN L+G I
Sbjct: 830 LNLSRNHLTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNRLSGKI 889

Query: 154 PLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFE 211
           P + QFQTFNDPSIY  N  LC  PL  KC  D   A  +   V++ED  +E    FE
Sbjct: 890 PTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGD-DEATTDSSGVDNEDHDDEHEDAFE 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496785|ref|XP_003635332.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 121/233 (51%), Gaps = 34/233 (14%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G +P  + EM++   L L +N   G IPS    L  L + DL++N LSG +P+   +L
Sbjct: 617 LSGNLPSWIGEMQSLLILRLRSNFFDGNIPSQVCSLSHLHILDLAHNYLSGSVPSCLGNL 676

Query: 66  PSLVW-------------------------------LKLSKNDLSGELFVALQNCTAFTG 94
             +                                 + LS N+L G+L   ++N +    
Sbjct: 677 SGMATEISDYRYEGRLSVVVKGRELIYQSTLYLVNSIDLSDNNLLGKL-PEIRNLSRLGT 735

Query: 95  FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153
               I   +G IPE+IG L +LETLDLS N LSGPIPPSM+S+T LS LNLSYN L+G I
Sbjct: 736 LNLSINHFTGNIPEDIGGLSQLETLDLSRNQLSGPIPPSMTSLTSLSHLNLSYNSLSGKI 795

Query: 154 PLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEEL 206
           P + QFQTFNDPSIY  N  LC  PL  KC  D + A  +     +ED  +E 
Sbjct: 796 PTSNQFQTFNDPSIYRNNLALCGDPLPLKCPGDDK-ATTDSSRAGNEDHDDEF 847

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488641|ref|XP_003633796.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 123/244 (50%), Gaps = 38/244 (15%)

Query: 8   GTIPPSMSE-MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLP 66
           G +P  + E M N   L L +N+  G IPS    L  L + DL  N+LSG IP+   +L 
Sbjct: 714 GNVPAWIGERMPNLLILRLRSNLFHGSIPSQLCTLSALHILDLGENNLSGFIPSCVGNLS 773

Query: 67  SLV--------------WLK-----------------LSKNDLSGELFVALQNCTAFTGF 95
            +V              W K                 LS N+LSGE+   + N +     
Sbjct: 774 GMVSEIDSQRYEAELMVWRKGREDLYKSILYLVNSMDLSNNNLSGEVPEGVTNLSRLGTL 833

Query: 96  PEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
              I   +G+IP+ IGSLQ LETLDLS N LSG IPP M+S+T L+ LNLSYN+L+G IP
Sbjct: 834 NLSINHLTGKIPDKIGSLQGLETLDLSRNQLSGVIPPGMASLTSLNHLNLSYNNLSGRIP 893

Query: 155 LTKQFQTFNDPSIYMGNADLCSPPLTTKCSSD-----LRNAGVEDGEVEDEDGSEELLFL 209
              Q QT +DPSIY  N  LC PP T KC  D      R+   E+ E E+ +GSE   F 
Sbjct: 894 TGNQLQTLDDPSIYENNPALCGPPTTAKCPGDDEPPKPRSGDSEEDENENGNGSEMKWFY 953

Query: 210 FEHG 213
              G
Sbjct: 954 VSMG 957

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496699|ref|XP_003635304.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 126/238 (52%), Gaps = 34/238 (14%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + L+G +P  + EM++   L L +N   G IPS    L  L + DL++N+LSG +P+
Sbjct: 703 LGDNRLSGNLPSWIGEMQSLLILSLRSNFFDGNIPSQVCNLSHLHILDLAHNNLSGSVPS 762

Query: 61  SFCSLPS--------------LVWLK-----------------LSKNDLSGELFVALQNC 89
              +L                LV +K                 LS N+LSG+L   ++N 
Sbjct: 763 CLGNLSGIATEISDERYEGRLLVVVKGRELIYQSTLYLVNIIDLSDNNLSGKL-PEIRNL 821

Query: 90  TAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND 148
           +        I   +G IPE+IG L +LETLDLS N LSGPIPPSM S+T L+ LNLSYN 
Sbjct: 822 SRLGTLNLSINHFTGNIPEDIGGLSQLETLDLSRNQLSGPIPPSMISLTFLNHLNLSYNR 881

Query: 149 LTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEEL 206
           L+G IP + QFQTFNDPSIY  N  LC  PL  KC  D + A  +     +ED  +E 
Sbjct: 882 LSGIIPTSNQFQTFNDPSIYRDNLALCGDPLPMKCPGDDK-ATTDSSRAGNEDHDDEF 938

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 125/238 (52%), Gaps = 34/238 (14%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G +P  + EM++   L L +N+  G IPS    L  L + D+++N+LSG +P+   +L
Sbjct: 711 LSGNLPSWIGEMQSLLILRLRSNLFDGNIPSQVCSLSHLHILDVAHNNLSGSVPSCLGNL 770

Query: 66  PSLVW-------------------------------LKLSKNDLSGELFVALQNCTAFTG 94
             +                                 + LS N++SG+L   L+N +    
Sbjct: 771 SGMATEISSERYEGQLSVVMKGRELIYQNTLYLVNSIDLSDNNISGKL-PELRNLSRLGT 829

Query: 95  FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI 153
                   +G IPE++GSL +LETLDLS N LSG IPPSM SMT L+ LNLSYN L+G I
Sbjct: 830 LNLSRNHLTGNIPEDVGSLSQLETLDLSRNQLSGLIPPSMVSMTSLNHLNLSYNRLSGKI 889

Query: 154 PLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFE 211
           P + QFQTFNDPSIY  N  LC  PL  KC  D   A  +   V++ED  +E    FE
Sbjct: 890 PTSNQFQTFNDPSIYRNNLALCGEPLAMKCPGD-DEATTDSSGVDNEDHDDEHEDAFE 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2034725	882	AT1G12460 [Arabidopsis thalian	0.754	0.208	0.392	1.8e-26
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.5	0.122	0.387	9.8e-25
TAIR|locus:2015504	890	AT1G62950 [Arabidopsis thalian	0.741	0.203	0.381	2e-24
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.741	0.182	0.380	6.6e-24
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.741	0.173	0.387	7.2e-24
TAIR|locus:2098267	836	IMK2 "inflorescence meristem r	0.733	0.214	0.370	8e-24
TAIR|locus:2033000	702	AT1G25320 [Arabidopsis thalian	0.737	0.256	0.358	6.7e-23
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.75	0.180	0.356	8e-23
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.713	0.148	0.379	1.6e-22
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.725	0.258	0.381	1.7e-22

TAIR|locus:2034725 AT1G12460 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 73/186 (39%), Positives = 103/186 (55%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             L  + LNG+IP S+ +M++ S + L NN + G IP +   LE L V +L N +L G +P 
Sbjct:   315 LESNKLNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPE 374

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
                +   L+ L +S NDL G++   L N T            +G IP  +G+L K++ LD
Sbjct:   375 DISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLD 434

Query:   121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
             LS N LSGPIP S+ S+  L+  N+SYN+L+G IP     Q F   S +  N  LC  PL
Sbjct:   435 LSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGS-SAFSNNPFLCGDPL 493

Query:   180 TTKCSS 185
              T C+S
Sbjct:   494 VTPCNS 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
 Identities = 48/124 (38%), Positives = 69/124 (55%)

Query:    64 SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123
             +L  L  + LS+N+LSGE+ V L                SG I E+   L+ +E+LDLS 
Sbjct:   777 NLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSF 836

Query:   124 NHLSGPIPPSMSSMTRLSL-NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTK 182
             N L GPIP  ++ M  L++ N+SYN+L+G +P  +QF TF   S Y GN  LC   +   
Sbjct:   837 NRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQS-YFGNPLLCGKSIDIS 895

Query:   183 CSSD 186
             C+S+
Sbjct:   896 CASN 899

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2015504 AT1G62950 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 71/186 (38%), Positives = 103/186 (55%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             L  + LNG++P  M +M+  S + L +N + G++P     LE L V +L N +L G IP 
Sbjct:   320 LESNRLNGSVPVGMGKMEKLSVIRLGDNFIDGKLPLELGNLEYLQVLNLHNLNLVGEIPE 379

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
                +   L+ L +S N L GE+   L N T            SG IP N+GSL +++ LD
Sbjct:   380 DLSNCRLLLELDVSGNGLEGEIPKNLLNLTNLEILDLHRNRISGNIPPNLGSLSRIQFLD 439

Query:   121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
             LS N LSGPIP S+ ++ RL+  N+SYN+L+G IP   + Q  +  S +  N  LC  PL
Sbjct:   440 LSENLLSGPIPSSLENLKRLTHFNVSYNNLSGIIP---KIQA-SGASSFSNNPFLCGDPL 495

Query:   180 TTKCSS 185
              T C++
Sbjct:   496 ETPCNA 501

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 286 (105.7 bits), Expect = 6.6e-24, P = 6.6e-24
 Identities = 70/184 (38%), Positives = 101/184 (54%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             L+ +LL G +P  +   K    L L NN + G IP     L  L    L +N+ SG +P 
Sbjct:   444 LTDNLLTGELPDVIGGDK-IGMLLLGNNGIGGRIPPAIGNLPALQTLSLESNNFSGALPP 502

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
                +L +L  L +S N L+G +   L  C +           SG IPE+I SL+ L TL+
Sbjct:   503 EIGNLKNLSRLNVSGNALTGAIPDELIRCASLAAVDLSRNGFSGEIPESITSLKILCTLN 562

Query:   121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
             +S N L+G +PP MS+MT L+ L++SYN L+GP+P+  QF  FN+ S ++GN  LC  P+
Sbjct:   563 VSRNRLTGELPPEMSNMTSLTTLDVSYNSLSGPVPMQGQFLVFNESS-FVGNPGLCGGPV 621

Query:   180 TTKC 183
                C
Sbjct:   622 ADAC 625

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 7.2e-24, P = 7.2e-24
 Identities = 71/183 (38%), Positives = 97/183 (53%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             LS + + G +P S+S +   S L L+ N LSG+IPS    L  L   DLS+N  S  IP 
Sbjct:   509 LSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPP 568

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
             +  +LP L ++ LS+NDL   +   L   +          +  G I     SLQ LE LD
Sbjct:   569 TLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLD 628

Query:   121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
             LS N+LSG IPPS   M  L+ +++S+N+L GPIP    F+    P  + GN DLC    
Sbjct:   629 LSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNA-PPDAFEGNKDLCGSVN 687

Query:   180 TTK 182
             TT+
Sbjct:   688 TTQ 690

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2098267 IMK2 "inflorescence meristem receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 8.0e-24, P = 8.0e-24
 Identities = 69/186 (37%), Positives = 102/186 (54%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             L  +  +G +P S+ +      + +S+N LSG IP    GL  L   D S NS++G IP 
Sbjct:   246 LDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRECGGLPHLQSLDFSYNSINGTIPD 305

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
             SF +L SLV L L  N L G +  A+      T       + +G IPE IG++  ++ LD
Sbjct:   306 SFSNLSSLVSLNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISGIKKLD 365

Query:   121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP--LTKQFQTFNDPSIYMGNADLCSP 177
             LS N+ +GPIP S+  + +LS  N+SYN L+GP+P  L+K+F +    S ++GN  LC  
Sbjct:   366 LSENNFTGPIPLSLVHLAKLSSFNVSYNTLSGPVPPVLSKKFNS----SSFLGNIQLCGY 421

Query:   178 PLTTKC 183
               +  C
Sbjct:   422 SSSNPC 427

GO:0004672 "protein kinase activity" evidence=IEA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016020 "membrane" evidence=NAS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2033000 AT1G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.7e-23, P = 6.7e-23
 Identities = 66/184 (35%), Positives = 100/184 (54%)

Query:     6 LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
             L+G +P  + + +    L L  N LSG IP+    L+ L + DLS NSL+G IP S    
Sbjct:   103 LSGNLPVELFKAQGLQSLVLYGNFLSGSIPNEIGDLKFLQILDLSRNSLNGSIPESVLKC 162

Query:    66 PSLVWLKLSKNDLSGELFVAL-QNCTAFTGFPEFITEPSGRIPENIGSLQKLE-TLDLSS 123
               L    LS+N+L+G +     Q+  +            G +P+++G+L +L+ TLDLS 
Sbjct:   163 NRLRSFDLSQNNLTGSVPSGFGQSLASLQKLDLSSNNLIGLVPDDLGNLTRLQGTLDLSH 222

Query:   124 NHLSGPIPPSMSSMT-RLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTK 182
             N  SG IP S+ ++  ++ +NL+YN+L+GPIP T        P+ ++GN  LC PPL   
Sbjct:   223 NSFSGSIPASLGNLPEKVYVNLAYNNLSGPIPQTGALVN-RGPTAFLGNPRLCGPPLKDP 281

Query:   183 CSSD 186
             C  D
Sbjct:   282 CLPD 285

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 66/185 (35%), Positives = 100/185 (54%)

Query:     1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             LS + L G+IP  +    +  +L+LS N  +  +P   E L+ L V DL N++L G +PA
Sbjct:   422 LSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPA 481

Query:    61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
               C   SL  L+L  N L+G +   + NC++           +G IP+++ +LQ+L+ L 
Sbjct:   482 DICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILK 541

Query:   121 LSSNHLSGPIPPSMSSMTRLSL-NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
             L +N LSG IP  +  +  L L N+S+N L G +PL   FQ+  D S   GN  +CSP L
Sbjct:   542 LEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSL-DQSAIQGNLGICSPLL 600

Query:   180 TTKCS 184
                C+
Sbjct:   601 RGPCT 605

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 68/179 (37%), Positives = 102/179 (56%)

Query:     1 LSRSLLNGTIPPSM-SEMKNFS-FLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI 58
             +S +LL GTIP  + + +KN   +L+ SNN+L+G IP     LE +   DLSNN  SG I
Sbjct:   606 ISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSI 665

Query:    59 PASFCSLPSLVWLKLSKNDLSGEL-FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE 117
             P S  +  ++  L  S+N+LSG +     Q               SG IP++ G++  L 
Sbjct:   666 PRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLV 725

Query:   118 TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLC 175
             +LDLSSN+L+G IP S+++++ L  L L+ N+L G +P +  F+  N   + MGN DLC
Sbjct:   726 SLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDL-MGNTDLC 783

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 69/181 (38%), Positives = 92/181 (50%)

Query:     8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
             G +P  +  +K    L LS N  SG +P     L+ LM  DLS NS +G I  S      
Sbjct:   104 GKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKK 163

Query:    68 LVWLKLSKNDLSGELFVAL-QNCTAFTGFPEFITEPSGRIPENIGSLQKLE-TLDLSSNH 125
             L  L LSKN  SG+L   L  N              +G IPE++GSL+ L+ TLDLS N 
Sbjct:   164 LKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNF 223

Query:   126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCS 184
              SG IP S+ ++  L  ++LSYN+L+GPIP          P+ + GN  LC  P+   CS
Sbjct:   224 FSGMIPTSLGNLPELLYVDLSYNNLSGPIPKFNVLLNAG-PNAFQGNPFLCGLPIKISCS 282

Query:   185 S 185
             +
Sbjct:   283 T 283

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (254), Expect = 1e-24
 Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 2/163 (1%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS ++L+G IP  +    +   LDL  N+L G+IP++   L  L    L++N L G IP 
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
               + SL W+ L  N+LSGE+   +   T+           +G IP ++G+L+ L+ L 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP-LTKQFQT 161
           L  N LSGPIPPS+ S+ +L SL+LS N L+G IP L  Q Q 
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.4 bits (227), Expect = 4e-21
 Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L G IP S+  +KN  +L L  N LSG IP +   L++L+  DLS+NSLSG IP     L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
            +L  L L  N+ +G++ VAL +         +  + SG IP+N+G    L  LDLS+N+
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 126 LSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           L+G IP  + S   L  L L  N L G IP
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 64/177 (36%), Positives = 81/177 (45%), Gaps = 27/177 (15%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L+R+   G +P S    K    LDLS N  SG +P     L ELM   LS N LSG IP 
Sbjct: 459 LARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              S   LV L LS N LSG+                        IP +   +  L  LD
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQ------------------------IPASFSEMPVLSQLD 553

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS 176
           LS N LSG IP ++ ++  L  +N+S+N L G +P T  F   N  ++  GN DLC 
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV-AGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 64/153 (41%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L+G IP  +  + + + LDL  N L+G IPS+   L+ L    L  N LSG IP S  SL
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 66  PSLVWLKLSKNDLSG---ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122
             L+ L LS N LSG   EL + LQN      F    T   G+IP  + SL +L+ L L 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT---GKIPVALTSLPRLQVLQLW 340

Query: 123 SNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
           SN  SG IP ++     L+ L+LS N+LTG IP
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.2 bits (216), Expect = 1e-19
 Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  +  +G +P   +++    FLD+SNN L G I S    +  L +  L+ N   GG+P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           SF S   L  L LS+N  SG +   L + +          + SG IP+ + S +KL +LD
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
           LS N LSG IP S S M  LS L+LS N L+G IP
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 14/161 (8%)

Query: 1   LSRSLLNGTIPPSMSEM-KNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGI 58
           LS + L+G IP  +     +  +L+LSNN  +G IP      LE L   DLSNN LSG I
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL---DLSNNMLSGEI 156

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPS----GRIPENIGSLQ 114
           P    S  SL  L L  N L G++  +L N T+     EF+T  S    G+IP  +G ++
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL----EFLTLASNQLVGQIPRELGQMK 212

Query: 115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
            L+ + L  N+LSG IP  +  +T L+ L+L YN+LTGPIP
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
             G IP +++ +     L L +N  SGEIP N      L V DLS N+L+G IP   CS 
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
            +L  L L  N L GE+  +L  C +           SG +P     L  +  LD+S+N+
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
           L G I      M  L  L+L+ N   G +P
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 7e-16
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L+G IP  + +++N   L L +N  +G+IP     L  L V  L +N  SG IP 
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +     +L  L LS N+L+GE+   L +         F     G IP+++G+ + L  + 
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410

Query: 121 LSSNHLSGPIPPSMSSMTRLS----LNLSYNDLTGPI 153
           L  N  SG +P   S  T+L     L++S N+L G I
Sbjct: 411 LQDNSFSGELP---SEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGL-EELMVKDLSNNSLSGGIP 59
           LS   ++G I  ++  +     ++LSNN LSG IP +       L   +LSNN+ +G IP
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
                +P+L  L LS N LSGE+   + + ++            G+IP ++ +L  LE L
Sbjct: 136 RGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
            L+SN L G IP  +  M  L  + L YN+L+G IP
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 46/165 (27%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
           L L N  L G IP++   L  L   +LS NS+ G IP S  S+ SL  L LS N  +G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS- 481

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSL 142
                                  IPE++G L  L  L+L+ N LSG +P ++        
Sbjct: 482 -----------------------IPESLGQLTSLRILNLNGNSLSGRVPAAL-------- 510

Query: 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDL 187
                   G   L +    F D      NA LC  P    C   L
Sbjct: 511 --------GGRLLHRASFNFTD------NAGLCGIPGLRACGPHL 541

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 51/136 (37%), Positives = 66/136 (48%), Gaps = 28/136 (20%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLSGE 81
           +DLS   +SG+I S    L  +   +LSNN LSG IP   F +  SL +L LS N+ +G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141
           +                   P G IP        LETLDLS+N LSG IP  + S + L 
Sbjct: 134 I-------------------PRGSIP-------NLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 142 -LNLSYNDLTGPIPLT 156
            L+L  N L G IP +
Sbjct: 168 VLDLGGNVLVGKIPNS 183

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 46/81 (56%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L G IP  +S++++   ++LS N + G IP +   +  L V DLS NS +G IP S   L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 66  PSLVWLKLSKNDLSGELFVAL 86
            SL  L L+ N LSG +  AL
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + + G IPPS+  + +   LDLS N  +G IP +   L  L + +L+ NSLSG +PA
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 61  SFCSLP 66
           +     
Sbjct: 509 ALGGRL 514

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 23 LDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
          LDLSNN L+  IP    +GL  L V DLS N+L+   P +F  LPSL  L LS N+L
Sbjct: 5  LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 33/156 (21%)

Query: 23  LDLSNNILSGEI--------PSNWEGLEELMVKDLSNNSLSGG--IPAS--FCSLPSLVW 70
           L L+NN L                  LE+L    L  N L G      +    +   L  
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKL---VLGRNRLEGASCEALAKALRANRDLKE 169

Query: 71  LKLSKNDLSGELFVALQNCTAFTGFPE---------FIT-EPSGRIPENIGSLQKLETLD 120
           L L+ N +      AL                     +T E +  + E + SL+ LE L+
Sbjct: 170 LNLANNGIGDAGIRAL--AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227

Query: 121 LSSNHLSGP----IPPSMSSMTR--LSLNLSYNDLT 150
           L  N+L+      +  ++ S     L+L+LS ND+T
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
PLN03150	623	hypothetical protein; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.46
PLN03150	623	hypothetical protein; Provisional	99.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.28
PRK15386	426	type III secretion protein GogB; Provisional	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.9
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.89
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.47
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.35
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.77
smart00370	26	LRR Leucine-rich repeats, outliers.	92.77
smart00370	26	LRR Leucine-rich repeats, outliers.	91.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.94
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.2
KOG4308	478	consensus LRR-containing protein [Function unknown	85.22
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.88
KOG4308	478	consensus LRR-containing protein [Function unknown	84.62
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.47
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	82.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.2e-25  Score=217.30  Aligned_cols=175  Identities=36%  Similarity=0.572  Sum_probs=144.6

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+++.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus       436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  514 (968)
T PLN00113        436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE  514 (968)
T ss_pred             cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence            3444444444444455555555555555555455433 346677778888888878888888899999999999999999


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ  160 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~  160 (244)
                      +|..+..+++|+.|++++|.+++.+|..++.+++|++|++++|++++.+|..+..++.|+ +++++|+++|.+|...++.
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~  594 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL  594 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999999999998988


Q ss_pred             cCCCCccccCCCCCCCCC
Q 042227          161 TFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       161 ~l~~~~~~~~n~~~c~~~  178 (244)
                      ++.... |.+|+.+|+.+
T Consensus       595 ~~~~~~-~~~n~~lc~~~  611 (968)
T PLN00113        595 AINASA-VAGNIDLCGGD  611 (968)
T ss_pred             ccChhh-hcCCccccCCc
Confidence            888887 99999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=6.3e-21  Score=184.53  Aligned_cols=154  Identities=38%  Similarity=0.636  Sum_probs=95.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++++.
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence            45555555666666666666666666666656666666666666666666666655666666666666666666666666


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +|..+.++++|+.|+++.|.+++.+|..++++++|++|++++|++++.+|..+.++++|+ +++++|.+.+.+|.
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence            666666666666666666666666666666666666666666666655666666666666 66666666555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=3.7e-22  Score=150.88  Aligned_cols=155  Identities=30%  Similarity=0.464  Sum_probs=142.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ||+|+++ .+|+.+.++.+|+.|++.+|+++ .+|..++.+++|++|+++-|++. .+|..|+.++.|+.||+++|++..
T Consensus        40 LSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   40 LSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             cccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccccc
Confidence            6889997 78889999999999999999999 88999999999999999999998 899999999999999999999974


Q ss_pred             -chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227           81 -ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ  158 (244)
Q Consensus        81 -~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~  158 (244)
                       .+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+..|+ +++.+|.++-.+|+.+.
T Consensus       117 ~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence             68999999999999999999998 67888999999999999999998 8999999999999 99999999977776655


Q ss_pred             cc
Q 042227          159 FQ  160 (244)
Q Consensus       159 ~~  160 (244)
                      +.
T Consensus       195 l~  196 (264)
T KOG0617|consen  195 LD  196 (264)
T ss_pred             hh
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.65  E-value=8.2e-18  Score=147.72  Aligned_cols=152  Identities=24%  Similarity=0.218  Sum_probs=103.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |+.|+++..-..++.+|+.|+.|+++.|.|....++.+...++|++|+|++|+|+..-+++|..+..|++|+|+.|.++.
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence            34555554444566666667777777776665556666666677777777777764445566666667777777777665


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCc---ccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPE---NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      .-...|..+.+|+.|++..|.+++.+-+   .|.++++|+.|++.+|++....-..|..++.|+ ||+.+|.+...
T Consensus       356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence            5555667777777777777777664433   367788888888888888844445788888888 88888887643

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=4.4e-16  Score=143.77  Aligned_cols=117  Identities=30%  Similarity=0.436  Sum_probs=101.3

Q ss_pred             CCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227           67 SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS  145 (244)
Q Consensus        67 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls  145 (244)
                      .++.|+|++|.+.|.+|..+..+++|+.|+++.|.+.|.+|..++.+++|+.|++++|++++.+|..++++++|+ |+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            378899999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             cCCCcCCCCCCcc--cccCCCCccccCCCCCCCCCCCCCCC
Q 042227          146 YNDLTGPIPLTKQ--FQTFNDPSIYMGNADLCSPPLTTKCS  184 (244)
Q Consensus       146 ~N~l~~~~p~~~~--~~~l~~~~~~~~n~~~c~~~~~~~c~  184 (244)
                      +|.++|.+|....  +..+.... +.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCc
Confidence            9999999996522  11222334 78999999987666674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1e-17  Score=126.87  Aligned_cols=161  Identities=29%  Similarity=0.384  Sum_probs=140.0

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+.++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+|+ .+|.++..++.|+.|+++-|++. .+|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3557889999999999999 78888999999999999999998 89999999999999999999997 899999999999


Q ss_pred             ceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccC
Q 042227           93 TGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMG  170 (244)
Q Consensus        93 ~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~  170 (244)
                      +.|++..|+++. .+|..|..++.|+.|+++.|.+. .+|..++++++|+ +.+..|.+-.-+-+...+..+.... ..|
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh-iqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH-IQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh-ccc
Confidence            999999999864 68999999999999999999999 8999999999999 9999999874444444555555556 677


Q ss_pred             CCCCCCCC
Q 042227          171 NADLCSPP  178 (244)
Q Consensus       171 n~~~c~~~  178 (244)
                      |....-+|
T Consensus       183 nrl~vlpp  190 (264)
T KOG0617|consen  183 NRLTVLPP  190 (264)
T ss_pred             ceeeecCh
Confidence            76544333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.61  E-value=6.1e-17  Score=142.30  Aligned_cols=141  Identities=23%  Similarity=0.190  Sum_probs=69.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+++-.-+..|.+|++|+.|+|..|+|.-.---.|.++++|+.|.|..|.|...-...|..|.++++|+|+.|+++.
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            45566653333445556666666666666552112234444444444444444432222334444455555555555554


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                      .-..++..+++|+.|+++.|.+....++.+...++|+.|||++|+|+...+..|..+..|+
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            4444555555555555555555555555555555555555555555543333333333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.56  E-value=2.2e-16  Score=140.01  Aligned_cols=166  Identities=27%  Similarity=0.359  Sum_probs=133.2

Q ss_pred             ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhcc
Q 042227            8 GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQ   87 (244)
Q Consensus         8 ~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~   87 (244)
                      ..+|.++..|.+|..+|++.|.+. .+|+.+-++++|+.|+|++|.|+ .+.-..+.+.+|++|++|+|+++ .+|.++.
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence            457888888899999999999988 88888888899999999999988 66666677788899999999988 8899999


Q ss_pred             CCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc-cccCCC
Q 042227           88 NCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ-FQTFND  164 (244)
Q Consensus        88 ~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~-~~~l~~  164 (244)
                      ++++|+.|++..|+++- -+|..++++.+|+.+..++|.+. ..|+.+..+..|+ |.+++|.+. ..|...+ +..+..
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v  366 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV  366 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence            99999999999988763 47888888888888888888888 7888888888888 888888886 4444433 344555


Q ss_pred             CccccCCCCCCCCCC
Q 042227          165 PSIYMGNADLCSPPL  179 (244)
Q Consensus       165 ~~~~~~n~~~c~~~~  179 (244)
                      .+ ...|+.+.-+|.
T Consensus       367 LD-lreNpnLVMPPK  380 (1255)
T KOG0444|consen  367 LD-LRENPNLVMPPK  380 (1255)
T ss_pred             ee-ccCCcCccCCCC
Confidence            55 566776665554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=3.8e-17  Score=138.01  Aligned_cols=162  Identities=25%  Similarity=0.351  Sum_probs=118.5

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL   82 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~   82 (244)
                      +|+++ .+|+.+..+.+|..+++.+|++. ..|+..-+++.|++||...|-++ .+|+.++.|.+|..|++.+|++. .+
T Consensus       146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             ccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence            45554 55566666666666677777666 34443444677777777777776 77778888888888888888886 55


Q ss_pred             hhhccCCCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227           83 FVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ  160 (244)
Q Consensus        83 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~  160 (244)
                      | .|..+..|.+++++.|.+. .+|+.. ..+.++..||+..|+++ +.|+.+.-+.+|+ +|+|+|.+++-.++...+ 
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-  297 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-  297 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence            6 7778888888888888776 455554 48888999999999999 8898888888898 999999999877776555 


Q ss_pred             cCCCCccccCCCC
Q 042227          161 TFNDPSIYMGNAD  173 (244)
Q Consensus       161 ~l~~~~~~~~n~~  173 (244)
                      .+.-.. ..|||.
T Consensus       298 hL~~L~-leGNPl  309 (565)
T KOG0472|consen  298 HLKFLA-LEGNPL  309 (565)
T ss_pred             eeeehh-hcCCch
Confidence            444444 567763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=6.7e-16  Score=137.03  Aligned_cols=144  Identities=32%  Similarity=0.484  Sum_probs=119.2

Q ss_pred             CCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCCCC
Q 042227            3 RSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         3 ~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      .|++. .-||+.+..|..|+.|||++|+++ +.|..+..-+++-+|+|++|+|. .+|. .|-+++.|-.||||+|++. 
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence            46664 568888999999999999999999 88998988899999999999998 6664 5668899999999999997 


Q ss_pred             chhhhccCCCCCceecCCCCCCC-------------------------CCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPS-------------------------GRIPENIGSLQKLETLDLSSNHLSGPIPPSMS  135 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~-------------------------~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~  135 (244)
                      .+|..+..+..|+.|.+++|.+.                         ..+|..+..+.+|..+|+|.|.+. .+|+.+.
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence            78888888888888888888722                         136667777788888888888888 7888888


Q ss_pred             CCCceE-EEcccCCCc
Q 042227          136 SMTRLS-LNLSYNDLT  150 (244)
Q Consensus       136 ~l~~L~-L~ls~N~l~  150 (244)
                      .+++|+ |++|+|.++
T Consensus       243 ~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hhhhhheeccCcCcee
Confidence            888888 888888775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=1.6e-15  Score=128.21  Aligned_cols=145  Identities=32%  Similarity=0.421  Sum_probs=126.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccE-EEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSF-LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      +++|++. ++|..+..++.+.+ +.+++|.+. .+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|.
T Consensus       395 fskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr  471 (565)
T KOG0472|consen  395 FSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR  471 (565)
T ss_pred             cccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence            4667775 77877777666544 566666666 78888999999999999999997 89999999999999999999998


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                       .+|+.+..+..++.+-.+.|++....|+.+++|.+|++||+.+|.+. .+|..++++.+|+ +++++|+|.
T Consensus       472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence             88998888888888888889988766777999999999999999999 8999999999999 999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.46  E-value=2.2e-15  Score=127.04  Aligned_cols=98  Identities=23%  Similarity=0.299  Sum_probs=69.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |..|.|+..-|..|+.+++|+.|||++|.|+.+-|+.|.++.+|..|-+-+ |+|+......|+++.+|+.|.+.-|++.
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence            467888866677888899999999999999988888999888887775544 8888444456777766666666666665


Q ss_pred             CchhhhccCCCCCceecCC
Q 042227           80 GELFVALQNCTAFTGFPEF   98 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~   98 (244)
                      -...+.++.++++..|.+.
T Consensus       154 Cir~~al~dL~~l~lLsly  172 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLY  172 (498)
T ss_pred             chhHHHHHHhhhcchhccc
Confidence            4444555555555444333

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=3.1e-13  Score=124.92  Aligned_cols=111  Identities=29%  Similarity=0.406  Sum_probs=100.9

Q ss_pred             CCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227           44 LMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS  123 (244)
Q Consensus        44 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~  123 (244)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+++.|.++|.+|+.++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCC-CceE-EEcccCCCcCCCC
Q 042227          124 NHLSGPIPPSMSSM-TRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus       124 N~l~~~~p~~l~~l-~~L~-L~ls~N~l~~~~p  154 (244)
                      |++++.+|..+..+ ..+. +++.+|...|..|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999988764 3566 9999998766554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=2.4e-14  Score=125.74  Aligned_cols=143  Identities=34%  Similarity=0.497  Sum_probs=124.3

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ..|++. .+|..++++..|++|||+.|+++ ..|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.|.+. .
T Consensus       106 y~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-s  180 (722)
T KOG0532|consen  106 YHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-S  180 (722)
T ss_pred             Hhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-h
Confidence            356664 67888899999999999999999 7888787765 899999999998 88999998899999999999997 7


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      +|..++.+.+|+.|.+..|++. .+|+.+..++ |..||+|.|+++ .+|-.|.+|..|+ |-|.+|++..+
T Consensus       181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            8888999999999999999888 5677777555 889999999999 8999999999999 99999999744

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=1e-14  Score=128.07  Aligned_cols=147  Identities=29%  Similarity=0.472  Sum_probs=132.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |+.|+++ ++|..+..+..|+.+.++.|.+. .+|..+.++..|++||++.|.++ .+|..++.++ |+.|-+++|+++ 
T Consensus        82 lsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-  156 (722)
T KOG0532|consen   82 LSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-  156 (722)
T ss_pred             ccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-
Confidence            5788886 88988888999999999999999 88999999999999999999998 8999999887 999999999998 


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceEEEcccCCCcCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPL  155 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~L~ls~N~l~~~~p~  155 (244)
                      .+|..++.+.+|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..|+-.+||+++|+++ .+|.
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecch
Confidence            88999999999999999999988 67888999999999999999999 7898888777555999999998 4443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=2.5e-12  Score=120.07  Aligned_cols=139  Identities=22%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCcc---ccC-------------C-CCCCEEEccCCcCCccCCcccCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN---WEG-------------L-EELMVKDLSNNSLSGGIPASFCS   64 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~---~~~-------------l-~~L~~L~L~~n~l~~~~p~~~~~   64 (244)
                      ++|+++ .+|.   .+++|+.|++++|++++ +|..   +..             + .+|+.|++++|+|+ .+|.....
T Consensus       290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~  363 (788)
T PRK15387        290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSE  363 (788)
T ss_pred             cCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcc
Confidence            455555 3443   23566777777776663 2221   110             1 25777777777776 44432211


Q ss_pred             -----------------CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           65 -----------------LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        65 -----------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                                       ..+|+.|++++|++++ +|..   .++|+.|++++|.++. +|..   ..+|+.|++++|+++
T Consensus       364 L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt  435 (788)
T PRK15387        364 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT  435 (788)
T ss_pred             cceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc
Confidence                             1245566666666652 3322   2456677777777663 5543   245777888888888


Q ss_pred             CCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227          128 GPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       128 ~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                       .+|..+..++.|+ +++++|++++.+|.
T Consensus       436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        436 -RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             -ccChHHhhccCCCeEECCCCCCCchHHH
Confidence             7888888888888 99999999887665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.33  E-value=1.1e-13  Score=127.41  Aligned_cols=139  Identities=27%  Similarity=0.388  Sum_probs=87.0

Q ss_pred             cCCcCCCCCCCccEEEccCCcccccCCccccC--------------------------CCCCCEEEccCCcCCccCCccc
Q 042227            9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG--------------------------LEELMVKDLSNNSLSGGIPASF   62 (244)
Q Consensus         9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~--------------------------l~~L~~L~L~~n~l~~~~p~~~   62 (244)
                      -+|+....++.|++|+|..|.+. .+|+.+-.                          ++.|+.|++.+|.++...-..+
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            45666666777777777777776 44432110                          1235556666666665544455


Q ss_pred             CCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-
Q 042227           63 CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-  141 (244)
Q Consensus        63 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-  141 (244)
                      .++.+|+.|+|++|++.......+.++..|++|++++|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+ 
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            56667777777777776444455666777777777777766 45666666666666666666666 555 566666676 


Q ss_pred             EEcccCCCcC
Q 042227          142 LNLSYNDLTG  151 (244)
Q Consensus       142 L~ls~N~l~~  151 (244)
                      +|++.|+++.
T Consensus       457 lDlS~N~L~~  466 (1081)
T KOG0618|consen  457 LDLSCNNLSE  466 (1081)
T ss_pred             Eecccchhhh
Confidence            7777776653

>PLN03210 Resistant to P

Probab=99.31  E-value=1.7e-11  Score=120.75  Aligned_cols=149  Identities=19%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCC
Q 042227           10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNC   89 (244)
Q Consensus        10 ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l   89 (244)
                      +|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|..-..+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            444455555566666655443224442 4555566666665554333555555556666666665543333344332 34


Q ss_pred             CCCceecCCCCCCCC--------------------CCCccc------------------------------CCCCCCCee
Q 042227           90 TAFTGFPEFITEPSG--------------------RIPENI------------------------------GSLQKLETL  119 (244)
Q Consensus        90 ~~L~~L~l~~n~l~~--------------------~~p~~~------------------------------~~l~~L~~L  119 (244)
                      ++|+.|.+++|....                    .+|..+                              ...++|+.|
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            444444443332111                    122110                              012356666


Q ss_pred             cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227          120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ  160 (244)
Q Consensus       120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~  160 (244)
                      ++++|...+.+|..++++++|+ |++++|..-+.+|....+.
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~  825 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE  825 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence            6666665556777777777777 7777765544555543333

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=6e-12  Score=117.78  Aligned_cols=134  Identities=23%  Similarity=0.392  Sum_probs=72.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+|+ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++.
T Consensus       227 Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        227 ANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            4567766 4565443  35677777777776 5555543  45677777777666 4555443  366666666666653


Q ss_pred             chhhhcc-------------------CCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           81 ELFVALQ-------------------NCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        81 ~~~~~l~-------------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                       +|..+.                   -.++|+.|.++.|.++. +|..+.  ++|+.|++++|+++ .+|..+.  +.|+
T Consensus       298 -LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~  370 (754)
T PRK15370        298 -LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTIT  370 (754)
T ss_pred             -CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcC
Confidence             222211                   01234444444444442 333332  45666666666665 4444332  3455


Q ss_pred             -EEcccCCCc
Q 042227          142 -LNLSYNDLT  150 (244)
Q Consensus       142 -L~ls~N~l~  150 (244)
                       |++++|.++
T Consensus       371 ~LdLs~N~Lt  380 (754)
T PRK15370        371 TLDVSRNALT  380 (754)
T ss_pred             EEECCCCcCC
Confidence             666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=1.2e-11  Score=115.65  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227           19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF   98 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~   98 (244)
                      +|++|++++|.++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4555555555555 3443332  24555555555555 4454443  35666666666666 3454432  356666666


Q ss_pred             CCCCC
Q 042227           99 ITEPS  103 (244)
Q Consensus        99 ~n~l~  103 (244)
                      .|+++
T Consensus       292 ~N~Lt  296 (754)
T PRK15370        292 DNSIR  296 (754)
T ss_pred             CCccc
Confidence            66655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.27  E-value=1.9e-13  Score=115.49  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEE
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVK   47 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L   47 (244)
                      ||+|.|+..-|+.|.+++.|..|-+.+ |+|+...-+.|.++..|+.|
T Consensus        98 LS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   98 LSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            688999888889999998888877776 88884434455554443333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.26  E-value=5e-13  Score=113.68  Aligned_cols=140  Identities=29%  Similarity=0.335  Sum_probs=87.1

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCC---CCEEEccCCcCCc----cCCcccCCC-CCCcEEEccCCCCCC---
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEE---LMVKDLSNNSLSG----GIPASFCSL-PSLVWLKLSKNDLSG---   80 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~---   80 (244)
                      ..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++   
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            34555677777777777776544444444444   7777777777662    223344555 677777777777763   


Q ss_pred             -chhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           81 -ELFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        81 -~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                       .++..+..+.+|+.|+++.|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+ |++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             2344556666777777777776642    233344556777777777777632    233455666777 777777776


Q ss_pred             C
Q 042227          151 G  151 (244)
Q Consensus       151 ~  151 (244)
                      +
T Consensus       235 ~  235 (319)
T cd00116         235 D  235 (319)
T ss_pred             h
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=5.2e-13  Score=109.65  Aligned_cols=134  Identities=25%  Similarity=0.260  Sum_probs=112.7

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      .-...|+++|+++|.|+ .+.++..-+++++.|++++|.|. .+. .+..+++|+.|||++|.++ .+..+-.++.+++.
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            34567999999999999 78888888999999999999998 443 4889999999999999997 66677788999999


Q ss_pred             ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCCCC
Q 042227           95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      |.+..|.+...  ..++++-+|..||+++|+|... -...++++|.|+ +.+.+|++.+.+.
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            99999987532  4578889999999999999721 234688999999 9999999986554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.23  E-value=7.3e-11  Score=110.34  Aligned_cols=68  Identities=28%  Similarity=0.433  Sum_probs=45.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |+.|.++ .+|+.+.  ++|+.|++++|+++ .+|..   .++|++|++++|+++ .+|..+   ++|+.|++++|.++
T Consensus       208 Ls~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp---~sL~~L~Ls~N~L~  275 (788)
T PRK15387        208 VGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLP---PGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCcc---cccceeeccCCchh
Confidence            4567776 6777665  47888888888888 46642   467888888888887 555432   45555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=4.4e-12  Score=98.49  Aligned_cols=109  Identities=30%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             CCCCCCccEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhc-cCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVAL-QNCTA   91 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~   91 (244)
                      +.+..++++|+|++|.|+ .+ +.++ .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++.. ...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            345567888999999888 34 3455 5778889999999888 444 467788889999999988732 2222 23444


Q ss_pred             CceecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCC
Q 042227           92 FTGFPEFITEPSGR-IPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        92 L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      |+.|+++.|++... .-..+..+++|+.|++.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            44444444444321 0122333444444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.22  E-value=1e-12  Score=111.77  Aligned_cols=150  Identities=24%  Similarity=0.270  Sum_probs=110.5

Q ss_pred             CCCCcCCccCCcCCCCCCC---ccEEEccCCcccc----cCCccccCC-CCCCEEEccCCcCCc----cCCcccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKN---FSFLDLSNNILSG----EIPSNWEGL-EELMVKDLSNNSLSG----GIPASFCSLPSL   68 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~---L~~L~l~~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~----~~p~~~~~l~~L   68 (244)
                      |++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++    .++..+..+++|
T Consensus        88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L  167 (319)
T cd00116          88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL  167 (319)
T ss_pred             ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence            4567776555555555544   9999999999883    233455666 899999999999983    234566777899


Q ss_pred             cEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCCCccccC-----
Q 042227           69 VWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGPIPPSMS-----  135 (244)
Q Consensus        69 ~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-----  135 (244)
                      +.|++++|.+++.    ++..+...++|+.|+++.|.+++.    ++..+..+++|++|++++|.+++.....+.     
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~  247 (319)
T cd00116         168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS  247 (319)
T ss_pred             CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence            9999999999853    445566778999999999988743    334567788999999999999853222222     


Q ss_pred             CCCceE-EEcccCCCc
Q 042227          136 SMTRLS-LNLSYNDLT  150 (244)
Q Consensus       136 ~l~~L~-L~ls~N~l~  150 (244)
                      ..+.|+ +++++|.++
T Consensus       248 ~~~~L~~L~l~~n~i~  263 (319)
T cd00116         248 PNISLLTLSLSCNDIT  263 (319)
T ss_pred             cCCCceEEEccCCCCC
Confidence            236889 999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.21  E-value=1.5e-12  Score=119.95  Aligned_cols=128  Identities=29%  Similarity=0.313  Sum_probs=89.7

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCchhhhccCCCCCcee
Q 042227           17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGF   95 (244)
Q Consensus        17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L   95 (244)
                      ++.|+.|++.+|.+++..-+.+.++.+|++|+|++|++. .+| ..+.++..|+.|+||+|+++ .+|..+.+++.|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            556777777777777655556677777777777777776 555 45667777777777777777 677777777777777


Q ss_pred             cCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227           96 PEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus        96 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~  148 (244)
                      ....|.+. .+| .+.++++|+.+|+|.|+++...-..-...++|+ ||+++|.
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            77777776 455 577777777777777777643222222336777 7777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=1.9e-11  Score=107.32  Aligned_cols=145  Identities=37%  Similarity=0.523  Sum_probs=85.0

Q ss_pred             CCcCCccCCcCCCCCC-CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            3 RSLLNGTIPPSMSEMK-NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      +|.++ .+|+....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|...+.+++|+.|++++|+++ .
T Consensus       125 ~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~  200 (394)
T COG4886         125 NNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D  200 (394)
T ss_pred             Ccccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-c
Confidence            45554 4555555553 7777777777777 55556677777777777777776 56655556677777777777776 4


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCC-----------------------CcccCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRI-----------------------PENIGSLQKLETLDLSSNHLSGPIPPSMSSMT  138 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~-----------------------p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  138 (244)
                      +|........|+.+.++.|.+. ..                       +..++.++++++|++++|+++ .++. ++.+.
T Consensus       201 l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~  277 (394)
T COG4886         201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT  277 (394)
T ss_pred             CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccC
Confidence            5554445555666666666311 12                       334444555555555555555 3333 45555


Q ss_pred             ceE-EEcccCCCcCCCC
Q 042227          139 RLS-LNLSYNDLTGPIP  154 (244)
Q Consensus       139 ~L~-L~ls~N~l~~~~p  154 (244)
                      +++ +++++|.+....|
T Consensus       278 ~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         278 NLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccCEEeccCccccccch
Confidence            555 5555555554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=1.9e-11  Score=107.30  Aligned_cols=130  Identities=33%  Similarity=0.428  Sum_probs=93.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCC---
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND---   77 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~---   77 (244)
                      +++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++++|+++ .+|........|+++.+++|.   
T Consensus       147 l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~  223 (394)
T COG4886         147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE  223 (394)
T ss_pred             ccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee
Confidence            3556665 55566778888888888888888 56655557778888888888887 666654444556666666662   


Q ss_pred             --------------------CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCC
Q 042227           78 --------------------LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS  136 (244)
Q Consensus        78 --------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~  136 (244)
                                          +. .++..+..+..++.|+++.|.++. ++. ++.+.+++.|++++|.++...|.....
T Consensus       224 ~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhcc
Confidence                                22 124667777888889999998884 333 889999999999999999665554443

>PLN03210 Resistant to P

Probab=99.12  E-value=3.2e-10  Score=111.83  Aligned_cols=128  Identities=23%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceec
Q 042227           17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP   96 (244)
Q Consensus        17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~   96 (244)
                      ..+|+.|++++|++. .++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+.++++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            344555555555554 3444445555555555554432224442 44455555555555544445555555555555555


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           97 EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      ++.|.....+|..+ ++++|+.|++++|.....+|..   ..+|+ |++++|.+.
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE  738 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence            55544333444433 4555555555555433334432   23455 666666654

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=7.3e-11  Score=75.77  Aligned_cols=61  Identities=44%  Similarity=0.627  Sum_probs=53.4

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCC
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      ++|++|++++|+++...++.|.++++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999966667889999999999999999866678899999999999999875

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1e-10  Score=90.82  Aligned_cols=122  Identities=25%  Similarity=0.309  Sum_probs=42.2

Q ss_pred             EccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCC
Q 042227           24 DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEP  102 (244)
Q Consensus        24 ~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l  102 (244)
                      .+..+.|+ ..+. +.+..+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.++..  +.+..++.|+.|.++.|.+
T Consensus         3 ~lt~~~i~-~~~~-~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen    3 RLTANMIE-QIAQ-YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--
T ss_pred             cccccccc-cccc-cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC
Confidence            34555666 4443 455668999999999998 453 455 588999999999999843  3577899999999999999


Q ss_pred             CCCCCccc-CCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227          103 SGRIPENI-GSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus       103 ~~~~p~~~-~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      +. +.+.+ ..+++|++|++++|+|... .-..++.++.|+ +++.+|+++..
T Consensus        77 ~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   77 SS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             Cc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            85 44334 4689999999999999742 224677889999 99999999743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1e-10  Score=96.31  Aligned_cols=125  Identities=26%  Similarity=0.270  Sum_probs=104.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ||+|.|+ .+..++.-++.++.|+++.|.+. .+. .+..+++|+.|||++|.++ .+-.+-.++.++++|.|+.|.+..
T Consensus       291 LS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  291 LSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             ccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh
Confidence            5788886 67777888999999999999999 443 4888999999999999998 677777789999999999999852


Q ss_pred             chhhhccCCCCCceecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCCCCCcc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGR-IPENIGSLQKLETLDLSSNHLSGPIPP  132 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~  132 (244)
                        -..+.++=+|..|++..|++... -...+++++.|+++.+.+|.+. .+++
T Consensus       367 --LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd  416 (490)
T KOG1259|consen  367 --LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD  416 (490)
T ss_pred             --hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence              34577788899999999998642 2356899999999999999999 4554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.4e-09  Score=69.75  Aligned_cols=61  Identities=44%  Similarity=0.584  Sum_probs=43.9

Q ss_pred             CCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecC
Q 042227           42 EELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDL  121 (244)
Q Consensus        42 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  121 (244)
                      ++|+.|++++|+++...++.|..+++|++|++++|+++...                        |+.|.++++|++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~------------------------~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP------------------------PDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE------------------------TTTTTTSTTESEEEE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC------------------------HHHHcCCCCCCEEeC
Confidence            46788888888888555567888888888888888887433                        345666666666666


Q ss_pred             CCCCC
Q 042227          122 SSNHL  126 (244)
Q Consensus       122 s~N~l  126 (244)
                      ++|+|
T Consensus        57 ~~N~l   61 (61)
T PF13855_consen   57 SNNNL   61 (61)
T ss_dssp             TSSSB
T ss_pred             cCCcC
Confidence            66654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=7.9e-09  Score=88.88  Aligned_cols=115  Identities=29%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             CCCCCCCccEEEccCCcccccCC--ccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCc-hhhhccC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGE-LFVALQN   88 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~   88 (244)
                      ....+++++.|||+.|-+....+  .....+++|+.|+++.|++.--.. ..-..++.|+.|.++.+.+++. +...+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34568889999999998875322  345678889999999988862111 1123567788888888888753 3334555


Q ss_pred             CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      +++|..|+++.|.....-......++.|++|||++|++.
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            677777777776422111122333445555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.54  E-value=2.4e-09  Score=78.65  Aligned_cols=104  Identities=29%  Similarity=0.453  Sum_probs=57.7

Q ss_pred             CccEEEccCCcccccCCcc---ccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           19 NFSFLDLSNNILSGEIPSN---WEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      .+..++|+.+++. .+++.   +.....|+..++++|.+. .+|..|. +.+.+++|++++|+++               
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------------   90 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------------   90 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------------
Confidence            3455667776665 34433   333445555577777776 4554443 3456777777777776               


Q ss_pred             ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                                .+|..+..++.|+.|+++.|.+. ..|..+..+.++. |+..+|.+.
T Consensus        91 ----------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   91 ----------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ----------hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence                      34444555555555555555555 4455454455555 555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=6e-10  Score=101.05  Aligned_cols=128  Identities=25%  Similarity=0.171  Sum_probs=89.0

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227           19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF   98 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~   98 (244)
                      .|.+.+++.|++. .+..++.-++.|+.|+|++|+++ .. +.+..++.|++|||++|.++ .+|..-..-.+|..|.+.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4666777778777 66677777778888888888876 22 26777788888888888876 444332222237777787


Q ss_pred             CCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227           99 ITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      +|.++..  ..+.++.+|+.||+++|-+.+- --..++.+..|+ |.+.+|++.+.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            7776632  3477888999999999988742 112355667788 89999988653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=1.5e-09  Score=98.49  Aligned_cols=157  Identities=23%  Similarity=0.261  Sum_probs=111.1

Q ss_pred             CcCCCCCCCccEEEccCCcccccC---C--ccccC--------------------------CCCCCEEEccCCcCCccCC
Q 042227           11 PPSMSEMKNFSFLDLSNNILSGEI---P--SNWEG--------------------------LEELMVKDLSNNSLSGGIP   59 (244)
Q Consensus        11 p~~l~~l~~L~~L~l~~N~l~~~~---p--~~~~~--------------------------l~~L~~L~L~~n~l~~~~p   59 (244)
                      |-.+..+.+|++|.+.++.+....   +  ..+..                          .-.|...+.++|.+. .+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            445677889999999998776310   0  00000                          013566677778877 667


Q ss_pred             cccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcc-cCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227           60 ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPEN-IGSLQKLETLDLSSNHLSGPIPPSMSSMT  138 (244)
Q Consensus        60 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  138 (244)
                      +++.-++.|+.|+|++|+++..  +.+..+++|++|++++|.+. .+|.. ...+. |+.|.+++|.++ .+ ..+.++.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~Lk  254 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLK  254 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhh
Confidence            7788889999999999999743  38889999999999999987 44542 23344 999999999998 33 3478899


Q ss_pred             ceE-EEcccCCCcCCC--CCCcccccCCCCccccCCCCCC
Q 042227          139 RLS-LNLSYNDLTGPI--PLTKQFQTFNDPSIYMGNADLC  175 (244)
Q Consensus       139 ~L~-L~ls~N~l~~~~--p~~~~~~~l~~~~~~~~n~~~c  175 (244)
                      +|+ ||+++|-+++.-  ...+.+..+.... +.|||.-|
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~-LeGNPl~c  293 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLW-LEGNPLCC  293 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHh-hcCCcccc
Confidence            999 999999987642  2233344444444 68888766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.2e-08  Score=86.16  Aligned_cols=137  Identities=24%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             CCCCCCccEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCcc-CCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGG-IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      ...|++|+.|+++.|++..-.... -..++.|+.|.++.|.++.. +-.....+|+|+.|+|..|.....-.....-+..
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            345778888888888776322111 11356677777777776621 1122334566666666666422222223333445


Q ss_pred             CceecCCCCCCCCCC-CcccCCCCCCCeecCCCCCCCCC-Cccc-----cCCCCceE-EEcccCCCc
Q 042227           92 FTGFPEFITEPSGRI-PENIGSLQKLETLDLSSNHLSGP-IPPS-----MSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        92 L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~-~p~~-----l~~l~~L~-L~ls~N~l~  150 (244)
                      |+.|+++.|++.... -...+.++.|+.|+++.+.++.. .|+.     ....+.|+ |+++.|++.
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            555666665544211 12244555555555555555421 1221     22344555 555555553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.45  E-value=2.4e-08  Score=83.70  Aligned_cols=138  Identities=22%  Similarity=0.205  Sum_probs=105.4

Q ss_pred             CCCCCCccEEEccCCcccccCCcc----ccCCCCCCEEEccCCcCCc----c---------CCcccCCCCCCcEEEccCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSN----WEGLEELMVKDLSNNSLSG----G---------IPASFCSLPSLVWLKLSKN   76 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~----~---------~p~~~~~l~~L~~L~Ls~N   76 (244)
                      +...++|++|+||+|.|....+..    +..+..|++|+|.+|.+..    .         .......-+.|+++..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            456679999999999988554433    4567899999999999861    1         1122445578999999999


Q ss_pred             CCCC----chhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCC----CCccccCCCCceE-EE
Q 042227           77 DLSG----ELFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSG----PIPPSMSSMTRLS-LN  143 (244)
Q Consensus        77 ~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~-L~  143 (244)
                      ++..    .+...+...+.|+.+.+..|.+...    +...+..+++|+.|||..|.++.    .+...+..++.|+ ++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            9974    3556788889999999999886532    22347789999999999999973    2455677888999 99


Q ss_pred             cccCCCcC
Q 042227          144 LSYNDLTG  151 (244)
Q Consensus       144 ls~N~l~~  151 (244)
                      ++++.+..
T Consensus       248 l~dcll~~  255 (382)
T KOG1909|consen  248 LGDCLLEN  255 (382)
T ss_pred             cccccccc
Confidence            99998863

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=5.4e-08  Score=86.20  Aligned_cols=129  Identities=26%  Similarity=0.309  Sum_probs=71.7

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+. +. .+..++.|+.|++++|.+...  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhc--cCCccchhhh
Confidence            555666677777777766 333335566667777777776662 22 244555566777777766521  2333366666


Q ss_pred             eecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           94 GFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        94 ~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      .+++++|.+...-+ . ...+.+++.+++.+|.+..  ...+..+..+. +++..|.++
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            66666666553322 1 3555666666666666652  22233333444 555556554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=1.6e-07  Score=83.28  Aligned_cols=140  Identities=26%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      .+|+|... ...+..+++|++|++++|.|+...  .+..++.|+.|++++|.|+ .+ +.+..++.|+.+++++|++...
T Consensus       103 ~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  103 YDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             cccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhhh
Confidence            34555422 222556777777777777777432  2455666777777777776 22 2344567777777777777643


Q ss_pred             hh-hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCc--eE-EEcccCCCcC
Q 042227           82 LF-VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR--LS-LNLSYNDLTG  151 (244)
Q Consensus        82 ~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~--L~-L~ls~N~l~~  151 (244)
                      -+ . ...+.+++.+.+..|.+..  ...+..+..+..+++..|.++. +-. +..+..  |+ +++++|++..
T Consensus       178 e~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~-~~~-l~~~~~~~L~~l~l~~n~i~~  246 (414)
T KOG0531|consen  178 ENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK-LEG-LNELVMLHLRELYLSGNRISR  246 (414)
T ss_pred             hhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee-ccC-cccchhHHHHHHhcccCcccc
Confidence            33 2 4566677777777776542  2334444555555777777762 211 222222  66 7777777763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=7.7e-07  Score=52.88  Aligned_cols=36  Identities=42%  Similarity=0.621  Sum_probs=17.4

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCcCC
Q 042227           19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS   55 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   55 (244)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.26  E-value=4.3e-07  Score=86.89  Aligned_cols=105  Identities=30%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             CccEEEccCCc--ccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceec
Q 042227           19 NFSFLDLSNNI--LSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP   96 (244)
Q Consensus        19 ~L~~L~l~~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~   96 (244)
                      .|++|-+..|.  +.....+.|..++.|.+||+++|.=-+.+|+.++.+-+|++|+++++.++ .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555553  33122233455555666666554433455555555556666666655555 5555555555555555


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227           97 EFITEPSGRIPENIGSLQKLETLDLSSN  124 (244)
Q Consensus        97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N  124 (244)
                      +..+.....+|.....+++|++|.+...
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccccccccchhhhcccccEEEeecc
Confidence            5555443334444444555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.8e-06  Score=51.32  Aligned_cols=37  Identities=41%  Similarity=0.614  Sum_probs=30.5

Q ss_pred             CCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227           42 EELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus        42 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      ++|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47899999999998 67777889999999999999887

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.13  E-value=1.7e-06  Score=82.79  Aligned_cols=131  Identities=25%  Similarity=0.217  Sum_probs=106.8

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc--CCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS--LSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+....+...+-+|.+. .++... ..++|++|-+..|.  +....++.|..++.|+.|||++|.=-+.+|..++.+.+|
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34467788889999887 555543 34589999999996  553444568889999999999988778999999999999


Q ss_pred             ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227           93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~  148 (244)
                      ++|+++...+. .+|..+++++.|.+||+..+.....+|.....+.+|+ +.+....
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999998 7899999999999999999876656677777788888 7765554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.11  E-value=4.2e-07  Score=76.38  Aligned_cols=136  Identities=21%  Similarity=0.223  Sum_probs=93.4

Q ss_pred             CCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC--c--cCCcccCCCCCCcEEEccCCCCCC----ch
Q 042227           15 SEMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS--G--GIPASFCSLPSLVWLKLSKNDLSG----EL   82 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~--~--~~p~~~~~l~~L~~L~Ls~N~l~~----~~   82 (244)
                      +.-+.|+++....|++...    +...|...+.|+.+.+..|.|.  |  .+...+..+++|+.|||.+|.++.    .+
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3456778888888877742    2234556678888888888775  1  233557778888888888888874    34


Q ss_pred             hhhccCCCCCceecCCCCCCCCCCCc----cc-CCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           83 FVALQNCTAFTGFPEFITEPSGRIPE----NI-GSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        83 ~~~l~~l~~L~~L~l~~n~l~~~~p~----~~-~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      ...+..+++|+.|+++.|.+...-..    .+ ...++|+.|.+.+|.++..    +...+...+.|. |++++|.+.
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            56677778888888888877643221    12 3467888888888888732    333455677888 888888883

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=2.3e-07  Score=68.43  Aligned_cols=118  Identities=16%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             CCCCCCccEEEccCCcccccCCccccC-CCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      +....+|+..++++|.+. .+|+.|.. .+.++.|++++|.|+ .+|..+..|+.|+.|+++.|.+. ..|+.+..+.++
T Consensus        49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            445677888899999999 67766654 458999999999998 78988999999999999999998 778888889999


Q ss_pred             ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227           93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS  135 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~  135 (244)
                      ..|+...|.+. .+|-.+-.-...-..++.++.+.+.-+.-+.
T Consensus       126 ~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  126 DMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             HHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            99998888766 3333222122233345566777765554433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.02  E-value=9.2e-06  Score=63.69  Aligned_cols=125  Identities=19%  Similarity=0.107  Sum_probs=73.2

Q ss_pred             cEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           21 SFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      +.+++++.++.. +-. ++ .+.+...+||++|.+. .+ ..|..++.|.+|.+++|+|+...|.--..+++|..|.+.+
T Consensus        22 ~e~~LR~lkip~-ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPV-IEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccc-hhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            455566555541 111 11 2234556667766664 22 3455666677777777777655555555556666666666


Q ss_pred             CCCCCC-CCcccCCCCCCCeecCCCCCCCCCC---ccccCCCCceE-EEcccCCC
Q 042227          100 TEPSGR-IPENIGSLQKLETLDLSSNHLSGPI---PPSMSSMTRLS-LNLSYNDL  149 (244)
Q Consensus       100 n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~---p~~l~~l~~L~-L~ls~N~l  149 (244)
                      |.+... .-+.+..++.|++|.+-+|.++..-   --.+..+++|+ ||++.-..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            665421 1123566788888888888887321   12466788888 88776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=3.7e-06  Score=69.68  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             cCCCCCCCeecCCCCCCCC-CCccccCCCCceE-EEcccCCCcCCC
Q 042227          110 IGSLQKLETLDLSSNHLSG-PIPPSMSSMTRLS-LNLSYNDLTGPI  153 (244)
Q Consensus       110 ~~~l~~L~~L~ls~N~l~~-~~p~~l~~l~~L~-L~ls~N~l~~~~  153 (244)
                      +..++.+..|+|+.|+|.. .--+.+..++.|+ +.+++|++....
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            4455666677777777752 1234567778888 888888886543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.5e-05  Score=62.51  Aligned_cols=108  Identities=23%  Similarity=0.235  Sum_probs=82.3

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch-hhhccCCCCCcee
Q 042227           17 MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL-FVALQNCTAFTGF   95 (244)
Q Consensus        17 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L   95 (244)
                      +.+...+||++|.+. .. +.|..++.|.+|.+++|+|+..-|..-..+++|+.|.|.+|.+.... -+.+..+++|+.|
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            346678999999988 33 35788999999999999999555655556788999999999997422 2457788999999


Q ss_pred             cCCCCCCCCCCC---cccCCCCCCCeecCCCCCC
Q 042227           96 PEFITEPSGRIP---ENIGSLQKLETLDLSSNHL  126 (244)
Q Consensus        96 ~l~~n~l~~~~p---~~~~~l~~L~~L~ls~N~l  126 (244)
                      .+-+|..+..--   -.+..+++|+.||+++=..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999888663211   1356789999999876433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=1e-05  Score=75.77  Aligned_cols=133  Identities=20%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             CCccEEEccCCccc-ccCCcccc-CCCCCCEEEccCCcCC-ccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           18 KNFSFLDLSNNILS-GEIPSNWE-GLEELMVKDLSNNSLS-GGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        18 ~~L~~L~l~~N~l~-~~~p~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      .+|++|++++...- ..+|..++ .+|.|+.|.+.+-.+. +.+.....++|+|..||+|+.+++..  ..+.++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46888888886432 23343333 4789999998886664 22334556788999999999988744  67888888888


Q ss_pred             ecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCC--c----cccCCCCceE-EEcccCCCcCC
Q 042227           95 FPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPI--P----PSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        95 L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~--p----~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      |.+.+=.+.. ..-..+.+|++|+.||+|..+.....  .    +.-..+|.|+ ||.|+..+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8877655542 12234667999999999987765321  1    1234588999 99998877644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.50  E-value=3e-05  Score=63.66  Aligned_cols=138  Identities=20%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             CCCCCCCccEEEccCCcccccCCcc----ccCCCCCCEEEccCCcCCcc----CCcc---------cCCCCCCcEEEccC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSN----WEGLEELMVKDLSNNSLSGG----IPAS---------FCSLPSLVWLKLSK   75 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~----~p~~---------~~~l~~L~~L~Ls~   75 (244)
                      .+.++++|+..+||+|.|....|+.    ++.-+.|.+|.+++|.+...    +...         ..+-|.|+++...+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3567899999999999988766653    45567899999999988621    1111         22347788999999


Q ss_pred             CCCCCc----hhhhccCCCCCceecCCCCCCCCCC-----CcccCCCCCCCeecCCCCCCCC----CCccccCCCCceE-
Q 042227           76 NDLSGE----LFVALQNCTAFTGFPEFITEPSGRI-----PENIGSLQKLETLDLSSNHLSG----PIPPSMSSMTRLS-  141 (244)
Q Consensus        76 N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----p~~~~~l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~-  141 (244)
                      |++..-    ....+..-..|+.+.+..|.+.-.-     -..+..+++|+.||+..|.++-    .+...+..++.|+ 
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            988632    1223333457777888877754220     0123457888999999998872    2334456667777 


Q ss_pred             EEcccCCCc
Q 042227          142 LNLSYNDLT  150 (244)
Q Consensus       142 L~ls~N~l~  150 (244)
                      |.+..+-++
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            888777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.42  E-value=0.00033  Score=61.40  Aligned_cols=63  Identities=22%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCC-CCCCchhh
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKN-DLSGELFV   84 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~   84 (244)
                      +..+.+++.|++++|.++ .+|. +  -.+|+.|.+++ +.++ .+|+.+.  ++|+.|++++| .+. .+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence            344678889999988888 5562 2  24688888877 3444 6666553  57888888887 443 4443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.35  E-value=0.0007  Score=49.48  Aligned_cols=107  Identities=15%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      ..|.+.++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|.++++|+.+.+.+ .+.......+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3566777888888875 455455567788888888888775 5534445677777888888865 443233344455555


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSS  123 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~  123 (244)
                      |+.+.+..+ +...-...|.+. .|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555555432 221222334444 555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=0.00012  Score=59.62  Aligned_cols=64  Identities=25%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             CCCCCCcEEEccCC--CCCCchhhhccCCCCCceecCCCCCCCC--CCCcccCCCCCCCeecCCCCCCC
Q 042227           63 CSLPSLVWLKLSKN--DLSGELFVALQNCTAFTGFPEFITEPSG--RIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        63 ~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      ..|++|+.|.++.|  .+.+.++.....+++|+++.++.|++..  .+ ..+..+++|..||+.++..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence            34444444444444  3333333333334444444444444331  11 12344555666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.28  E-value=0.0002  Score=67.29  Aligned_cols=114  Identities=16%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CCCCccEEEccCCcccc-cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC-chhhhccCCCCCc
Q 042227           16 EMKNFSFLDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG-ELFVALQNCTAFT   93 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~   93 (244)
                      -||.|+.|.+++-.+.. .+-.-..++++|..||+++.+++ .+ ..+..+++|+.|.+.+=.+.. ..-..+..+++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            37999999999977653 22344567899999999999998 33 678899999999998877764 3445788899999


Q ss_pred             eecCCCCCCCCCC--C----cccCCCCCCCeecCCCCCCCCCCc
Q 042227           94 GFPEFITEPSGRI--P----ENIGSLQKLETLDLSSNHLSGPIP  131 (244)
Q Consensus        94 ~L~l~~n~l~~~~--p----~~~~~l~~L~~L~ls~N~l~~~~p  131 (244)
                      .|+++........  .    +.-..+++|+.||.|++.+...+-
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            9999987654321  1    123458999999999998875443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.25  E-value=0.00085  Score=58.88  Aligned_cols=63  Identities=17%  Similarity=0.293  Sum_probs=41.3

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCC-cccccCCccccCCCCCCEEEccCC-cCCccCCcccCCCCCCcEEEccCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNN-ILSGEIPSNWEGLEELMVKDLSNN-SLSGGIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      ++|.++ .+|.   -..+|++|+++++ .++ .+|+.+.  .+|+.|++++| .+. .+|.      +|+.|+++.+..
T Consensus        60 s~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~  124 (426)
T PRK15386         60 KDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT  124 (426)
T ss_pred             CCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence            445554 4452   1246999999874 554 6776553  68999999998 565 5654      466777776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.14  E-value=0.00032  Score=57.11  Aligned_cols=113  Identities=22%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCC--cCCccCCcccCCCCCCcEEEccCCCCCC-chhhh
Q 042227            9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN--SLSGGIPASFCSLPSLVWLKLSKNDLSG-ELFVA   85 (244)
Q Consensus         9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~   85 (244)
                      .+......+..|+.|.+.+..++. + ..+..+++|+.|.++.|  .+.+.++-....+++|++++++.|+++. .--..
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             Ccccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            355555567778888888877773 2 34667889999999999  6666666666777999999999999973 11133


Q ss_pred             ccCCCCCceecCCCCCCCCCC---CcccCCCCCCCeecCCC
Q 042227           86 LQNCTAFTGFPEFITEPSGRI---PENIGSLQKLETLDLSS  123 (244)
Q Consensus        86 l~~l~~L~~L~l~~n~l~~~~---p~~~~~l~~L~~L~ls~  123 (244)
                      +..+.+|..|++..|..++.-   -..|.-+++|++||-..
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            455666777888777655411   11255567777776544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.00029  Score=58.66  Aligned_cols=84  Identities=24%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCCCcEEEccCCCCCC--chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE
Q 042227           65 LPSLVWLKLSKNDLSG--ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS  141 (244)
Q Consensus        65 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~  141 (244)
                      .+.++.+||.+|.|+.  .+...+.+++.|++|+++.|.++..|-..-..+.+|++|-|.+..+... ....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4556666777776653  4455566667777777777666543322113445677777777666532 223345566666


Q ss_pred             -EEcccCC
Q 042227          142 -LNLSYND  148 (244)
Q Consensus       142 -L~ls~N~  148 (244)
                       ++++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence             6666663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=4.6e-05  Score=62.75  Aligned_cols=101  Identities=25%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchh-hhccCCCCCce
Q 042227           16 EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF-VALQNCTAFTG   94 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~   94 (244)
                      ++.+.+.|++-++.+.++  .....++.|++|.|+-|+|+ .+ ..+..+++|++|+|..|.|..... ..+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            356677788888887743  24567888888888888887 33 346778888888888888874322 34666777777


Q ss_pred             ecCCCCCCCCCCCcc-----cCCCCCCCeec
Q 042227           95 FPEFITEPSGRIPEN-----IGSLQKLETLD  120 (244)
Q Consensus        95 L~l~~n~l~~~~p~~-----~~~l~~L~~L~  120 (244)
                      |.+..|.-.|.-+..     +.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            777777655543322     33456666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=1.9e-05  Score=65.60  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             CccEEEccCCcccc-cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC-CCCC-chhhhccCCCCCcee
Q 042227           19 NFSFLDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DLSG-ELFVALQNCTAFTGF   95 (244)
Q Consensus        19 ~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~L   95 (244)
                      .|++|||+...|+. .+...+..+.+|+-|.+.++.+.+.+...+.+-.+|+.|+++.+ .++. ...-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            37777777777663 22344566777777777777777666666666777777777764 3332 222345667777777


Q ss_pred             cCCCCCC
Q 042227           96 PEFITEP  102 (244)
Q Consensus        96 ~l~~n~l  102 (244)
                      +++.+.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            7776663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.00021  Score=59.55  Aligned_cols=65  Identities=23%  Similarity=0.117  Sum_probs=36.6

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCCcccCCCCCCcEEEccCCCCC
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      ..+.+|+.|.+.++++.+.+-..+.+-.+|..|+++.+. ++. ...-.+.+++.|+.|+++.+.+.
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            445666666777777666555556666666666666543 321 11122445566666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.39  E-value=0.011  Score=43.12  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             CcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227           11 PPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCT   90 (244)
Q Consensus        11 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~   90 (244)
                      ...|.++++|+.+.+.++ +.......|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +.......+.++ 
T Consensus        28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence            345778889999999886 6645556788888999999976 444244467778999999999876 654555667777 


Q ss_pred             CCceecCCCCCCCCCCCcccCCCCCC
Q 042227           91 AFTGFPEFITEPSGRIPENIGSLQKL  116 (244)
Q Consensus        91 ~L~~L~l~~n~l~~~~p~~~~~l~~L  116 (244)
                      +|+.+.+.. .+...-...|.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            888887654 3332223445555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.35  E-value=0.0018  Score=32.13  Aligned_cols=19  Identities=47%  Similarity=0.838  Sum_probs=9.9

Q ss_pred             ccEEEccCCcccccCCcccc
Q 042227           20 FSFLDLSNNILSGEIPSNWE   39 (244)
Q Consensus        20 L~~L~l~~N~l~~~~p~~~~   39 (244)
                      |++||+++|+++ .+|+.|.
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.20  E-value=0.0021  Score=31.90  Aligned_cols=21  Identities=48%  Similarity=0.706  Sum_probs=12.5

Q ss_pred             CCCEEEccCCcCCccCCcccCC
Q 042227           43 ELMVKDLSNNSLSGGIPASFCS   64 (244)
Q Consensus        43 ~L~~L~L~~n~l~~~~p~~~~~   64 (244)
                      +|++||+++|+++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.80  E-value=0.0051  Score=50.86  Aligned_cols=154  Identities=21%  Similarity=0.181  Sum_probs=104.2

Q ss_pred             CCCCcCCccCCcCC----CCCCCccEEEccCCcccccCCcccc-------------CCCCCCEEEccCCcCCccCC----
Q 042227            1 LSRSLLNGTIPPSM----SEMKNFSFLDLSNNILSGEIPSNWE-------------GLEELMVKDLSNNSLSGGIP----   59 (244)
Q Consensus         1 Ls~N~l~~~ip~~l----~~l~~L~~L~l~~N~l~~~~p~~~~-------------~l~~L~~L~L~~n~l~~~~p----   59 (244)
                      ||.|-|....|+.+    +.-+.|.+|.+++|.+.......++             .-+.|++.....|++. ..|    
T Consensus        99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~  177 (388)
T COG5238          99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELS  177 (388)
T ss_pred             ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHH
Confidence            68899987777654    5568899999999988733222222             3478999999999987 222    


Q ss_pred             -cccCCCCCCcEEEccCCCCCCc-----hhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC
Q 042227           60 -ASFCSLPSLVWLKLSKNDLSGE-----LFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP  129 (244)
Q Consensus        60 -~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~  129 (244)
                       ..+..-.+|+++.+.+|.|.-.     ....+..+.+|+.|++..|.++..    +...+...+.|+.|.+..+-++..
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence             1233346889999999988632     234567788999999999987742    223455667788888888887643


Q ss_pred             Ccc----ccC--CCCceE-EEcccCCCcCCCCC
Q 042227          130 IPP----SMS--SMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       130 ~p~----~l~--~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      -..    .|.  ..++|. |...+|.+.+.+-.
T Consensus       258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             cHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence            222    122  246677 77888877665433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.39  E-value=0.00025  Score=57.10  Aligned_cols=88  Identities=20%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCC
Q 042227           37 NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL  116 (244)
Q Consensus        37 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  116 (244)
                      .+......+.||++.|++. .+...|..++.|..|+++.|++. ..|..+..+..++.+....|..+ ..|..+++.+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3445567778888888876 56667777788888888888876 56666666666666666666555 467777777888


Q ss_pred             CeecCCCCCCC
Q 042227          117 ETLDLSSNHLS  127 (244)
Q Consensus       117 ~~L~ls~N~l~  127 (244)
                      +.+++-.|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88887777766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.0015  Score=54.08  Aligned_cols=81  Identities=23%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc--ccCCCCCCcEEEccCCCCCCchhh-----hc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA--SFCSLPSLVWLKLSKNDLSGELFV-----AL   86 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~-----~l   86 (244)
                      ..+|+.|++|.|+-|+|+..-  .+..+++|+.|+|..|.|. .+.+  -+.++++|+.|.|..|.-.|.-+.     .+
T Consensus        37 c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            357899999999999999543  4678999999999999998 4443  467899999999999988765432     35


Q ss_pred             cCCCCCceecC
Q 042227           87 QNCTAFTGFPE   97 (244)
Q Consensus        87 ~~l~~L~~L~l   97 (244)
                      .-+++|+.|+-
T Consensus       114 R~LPnLkKLDn  124 (388)
T KOG2123|consen  114 RVLPNLKKLDN  124 (388)
T ss_pred             HHcccchhccC
Confidence            56777777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.50  E-value=0.024  Score=26.13  Aligned_cols=13  Identities=62%  Similarity=0.743  Sum_probs=5.2

Q ss_pred             CccEEEccCCccc
Q 042227           19 NFSFLDLSNNILS   31 (244)
Q Consensus        19 ~L~~L~l~~N~l~   31 (244)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.36  E-value=0.0016  Score=52.51  Aligned_cols=88  Identities=24%  Similarity=0.165  Sum_probs=73.2

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+......+.||++.|++. .....|+-++.+..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++.+.+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455677889999999987 55666777888889999999997 88888888888888888888876 789999999999


Q ss_pred             ceecCCCCCCC
Q 042227           93 TGFPEFITEPS  103 (244)
Q Consensus        93 ~~L~l~~n~l~  103 (244)
                      +.+..-.+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99888888754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.77  E-value=0.084  Score=26.99  Aligned_cols=14  Identities=64%  Similarity=0.664  Sum_probs=7.8

Q ss_pred             CCccEEEccCCccc
Q 042227           18 KNFSFLDLSNNILS   31 (244)
Q Consensus        18 ~~L~~L~l~~N~l~   31 (244)
                      ++|++|++++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.77  E-value=0.084  Score=26.99  Aligned_cols=14  Identities=64%  Similarity=0.664  Sum_probs=7.8

Q ss_pred             CCccEEEccCCccc
Q 042227           18 KNFSFLDLSNNILS   31 (244)
Q Consensus        18 ~~L~~L~l~~N~l~   31 (244)
                      ++|++|++++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.94  E-value=0.13  Score=26.29  Aligned_cols=19  Identities=58%  Similarity=0.952  Sum_probs=14.5

Q ss_pred             CCCCCeecCCCCCCCCCCcc
Q 042227          113 LQKLETLDLSSNHLSGPIPP  132 (244)
Q Consensus       113 l~~L~~L~ls~N~l~~~~p~  132 (244)
                      +++|++|++++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888899999888 5554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.94  E-value=0.13  Score=26.29  Aligned_cols=19  Identities=58%  Similarity=0.952  Sum_probs=14.5

Q ss_pred             CCCCCeecCCCCCCCCCCcc
Q 042227          113 LQKLETLDLSSNHLSGPIPP  132 (244)
Q Consensus       113 l~~L~~L~ls~N~l~~~~p~  132 (244)
                      +++|++|++++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888899999888 5554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.20  E-value=0.065  Score=26.87  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=7.2

Q ss_pred             CCCcEEEccCCCCCC
Q 042227           66 PSLVWLKLSKNDLSG   80 (244)
Q Consensus        66 ~~L~~L~Ls~N~l~~   80 (244)
                      ++|++|++++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455556666665543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.22  E-value=0.013  Score=52.86  Aligned_cols=65  Identities=28%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             CCCCCCccEEEccCCcccccCC----ccccCC-CCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIP----SNWEGL-EELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      +...++|+.|++++|.+.+.--    ..+... ..+++|++..|.++.    .+.+.+.....++.++++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            3445666666666666653111    111111 334444444444441    2223333444555555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.88  E-value=0.61  Score=24.04  Aligned_cols=18  Identities=33%  Similarity=0.684  Sum_probs=13.4

Q ss_pred             CCCCeecCCCCCCCCCCcc
Q 042227          114 QKLETLDLSSNHLSGPIPP  132 (244)
Q Consensus       114 ~~L~~L~ls~N~l~~~~p~  132 (244)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            46788888888888 6665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=84.62  E-value=0.017  Score=52.12  Aligned_cols=133  Identities=28%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             CCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC--c--cCCcccC----CCCCCcEEEccCCCCCC----c
Q 042227           18 KNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS--G--GIPASFC----SLPSLVWLKLSKNDLSG----E   81 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~--~--~~p~~~~----~l~~L~~L~Ls~N~l~~----~   81 (244)
                      ..+++|++..+.+++.    +.+.+.....++.++++.|.+.  |  .++..+.    ...++++|.++++.++.    .
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            4456666666666642    2344555666777777777663  1  1222232    35667777777777663    2


Q ss_pred             hhhhccCCCC-CceecCCCCCCCCC----CCcccCCC-CCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           82 LFVALQNCTA-FTGFPEFITEPSGR----IPENIGSL-QKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        82 ~~~~l~~l~~-L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      +...+...+. +..+++..|.+...    ....+..+ ..++.++++.|.|+..    +...+..++.++ +.+++|++.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            2334444555 55577776665432    22234444 5667788888877643    334455566677 777777764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.47  E-value=0.81  Score=23.57  Aligned_cols=14  Identities=43%  Similarity=0.534  Sum_probs=7.4

Q ss_pred             CCccEEEccCCccc
Q 042227           18 KNFSFLDLSNNILS   31 (244)
Q Consensus        18 ~~L~~L~l~~N~l~   31 (244)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555554

>TIGR00864 PCC polycystin cation channel protein

Probab=82.08  E-value=0.85  Score=48.88  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCC
Q 042227          120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFN  163 (244)
Q Consensus       120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~  163 (244)
                      ||++|+|+...+..|..+++|+ |+|++|++.|.|...+..+|++
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~   45 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE   45 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence            6889999965566788899999 9999999999988766555554

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.27  E-value=0.51  Score=42.12  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=28.2

Q ss_pred             CCCCcEEEccCCC-CCCchhhhccC-CCCCceecCCCCC-CCCC-CCcccCCCCCCCeecCCCCCC
Q 042227           65 LPSLVWLKLSKND-LSGELFVALQN-CTAFTGFPEFITE-PSGR-IPENIGSLQKLETLDLSSNHL  126 (244)
Q Consensus        65 l~~L~~L~Ls~N~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~ls~N~l  126 (244)
                      +.+|+.+++++.. ++...-..+.. +++|+.|.+..+. ++.. +-.....++.|++|+++++..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555666666555 44332222222 5556555544443 2221 111233455566666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-17
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-13

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 26/157 (16%)
Query: 24  DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83
           ++++ +  G     ++    +M  D+S N LSG IP    S+P L  L L  ND+SG   
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-- 668
Query: 84  VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L 142
                                 IP+ +G L+ L  LDLSSN L G IP +MS++T L+ +
Sbjct: 669 ----------------------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
           +LS N+L+GPIP   QF+TF  P+ ++ N  LC  PL
Sbjct: 707 DLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPL 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 26/157 (16%)
Query: 24  DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83
           ++++ +  G     ++    +M  D+S N LSG IP    S+P L  L L  ND+SG   
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-- 671
Query: 84  VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L 142
                                 IP+ +G L+ L  LDLSSN L G IP +MS++T L+ +
Sbjct: 672 ----------------------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPL 179
           +LS N+L+GPIP   QF+TF  P+ ++ N  LC  PL
Sbjct: 710 DLSNNNLSGPIPEMGQFETF-PPAKFLNNPGLCGYPL 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           ++ + ++G IP  +S++K    LD S N LSG +P +   L  L+      N +SG IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 61  SFCSLPSL-VWLKLSKNDLSGELFVALQNCT-AFTGFPEFITEPSGRI------------ 106
           S+ S   L   + +S+N L+G++     N   AF      + E    +            
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 107 -PEN--------IGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLT 156
             +N        +G  + L  LDL +N + G +P  ++ +  L SLN+S+N+L G IP  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 157 KQFQTFNDPSIYMGNADLCSPPL 179
              Q F D S Y  N  LC  PL
Sbjct: 288 GNLQRF-DVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  164 bits (418), Expect = 6e-47
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 26/182 (14%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
             G     ++ +   +  ++++ +  G     ++    +M  D+S N LSG IP    S+
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
           P L  L L  ND+SG                         IP+ +G L+ L  LDLSSN 
Sbjct: 656 PYLFILNLGHNDISGS------------------------IPDEVGDLRGLNILDLSSNK 691

Query: 126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCS 184
           L G IP +MS++T L+ ++LS N+L+GPIP   QF+TF  P+ ++ N  LC  PL     
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP-PAKFLNNPGLCGYPLPRCDP 750

Query: 185 SD 186
           S+
Sbjct: 751 SN 752

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 8e-38
 Identities = 58/155 (37%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  +   G IPP++S       L LS N LSG IPS+   L +L    L  N L G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
               + +L  L L  NDL+GE+   L NCT            +G IP+ IG L+ L  L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
           LS+N  SG IP  +     L  L+L+ N   G IP
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (314), Expect = 9e-33
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L G IP  +  ++N + L LSNN  SG IP+       L+  DL+ N  +G IPA
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP--EFITEPSGRIPENIGSLQKLET 118
           +          K++ N ++G+ +V ++N            + E  G   E +  L     
Sbjct: 557 AMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 119 LDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
            +++S    G   P+  +   +  L++SYN L+G IP
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (307), Expect = 8e-32
 Identities = 56/157 (35%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 1   LSRSLLNGTIPPSM--SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI 58
           LS +  +G I P++  +       L L NN  +G+IP       EL+   LS N LSG I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLET 118
           P+S  SL  L  LKL  N L GE                        IP+ +  ++ LET
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGE------------------------IPQELMYVKTLET 470

Query: 119 LDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           L L  N L+G IP  +S+ T L  ++LS N LTG IP
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 2e-31
 Identities = 48/154 (31%), Positives = 64/154 (41%), Gaps = 27/154 (17%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  ++L G IP  +  +K    L L  N L+GEIPS       L    LSNN L+G IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
               L +L  LKLS N  SG                         IP  +G  + L  LD
Sbjct: 509 WIGRLENLAILKLSNNSFSGN------------------------IPAELGDCRSLIWLD 544

Query: 121 LSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
           L++N  +G IP +M      S  ++ N + G   
Sbjct: 545 LNTNLFNGTIPAAMFK---QSGKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (299), Expect = 1e-30
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIP 59
           +S + L+G    ++S       L++S+N   G IP    + L+ L    L+ N  +G IP
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL---SLAENKFTGEIP 286

Query: 60  ASFC-SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLE 117
                +  +L  L LS N   G +     +C+            SG +P + +  ++ L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 118 TLDLSSNHLSGPIPPSMSSMTR--LSLNLSYNDLTGPIP 154
            LDLS N  SG +P S+++++   L+L+LS N+ +GPI 
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 1e-28
 Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLSNNSLSGGIP 59
           +S +   G IPP    +K+  +L L+ N  +GEIP    G  + L   DLS N   G +P
Sbjct: 254 ISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 60  ASFCSLPSLVWLKLSKNDLSGEL-FVALQNCTAFTGFPEFITEPSGRIPENIGSL-QKLE 117
             F S   L  L LS N+ SGEL    L              E SG +PE++ +L   L 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 118 TLDLSSNHLSGPIPPSMSSMTRLSL---NLSYNDLTGPIP 154
           TLDLSSN+ SGPI P++    + +L    L  N  TG IP
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (279), Expect = 5e-28
 Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 29/156 (18%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           +S +  +  IP  + +      LD+S N LSG+         EL + ++S+N   G IP 
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETL 119
               L SL +L L++N  +GE                        IP+ + G+   L  L
Sbjct: 266 L--PLKSLQYLSLAENKFTGE------------------------IPDFLSGACDTLTGL 299

Query: 120 DLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           DLS NH  G +PP   S + L SL LS N+ +G +P
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 8e-26
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWE--GLEELMVKDLSNNSLSGGI 58
           LS S +NG++        + + LDLS N LSG + +         L   ++S+N+L    
Sbjct: 84  LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 59  PAS-FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI---TEPSGRIPENIGSLQ 114
             S    L SL  L LS N +SG   V                   + SG +   +    
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200

Query: 115 KLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
            LE LD+SSN+ S  I P +   + L  L++S N L+G   
Sbjct: 201 NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFS 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 30/158 (18%)

Query: 4   SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA--S 61
           ++    +  S+  +     L LSN+ ++G +   ++    L   DLS NSLSG +    S
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 62  FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDL 121
             S   L +L +S N L                         G++      L  LE LDL
Sbjct: 122 LGSCSGLKFLNVSSNTLDF----------------------PGKVSG-GLKLNSLEVLDL 158

Query: 122 SSNHLSGPIPPSMSSMTRLS----LNLSYNDLTGPIPL 155
           S+N +SG                 L +S N ++G + +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 31/114 (27%)

Query: 48  DLSNNSLSGG---IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSG 104
           DLS+  L+ G   + +S  SL  L  L LS + ++G                        
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS----------------------- 92

Query: 105 RIPENIGSLQKLETLDLSSNHLSGPIPP--SMSSMTRL-SLNLSYNDLTGPIPL 155
            +         L +LDLS N LSGP+    S+ S + L  LN+S N L  P  +
Sbjct: 93  -VSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 9e-12
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP 59
           L  + ++G+IP  + +++  + LDLS+N L G IP     L  L   DLSNN+LSG IP
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 23/98 (23%)

Query: 63  CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122
           C    +  + LS   L+                          +  ++ SL  LE+L LS
Sbjct: 47  CRDDKVTSIDLSSKPLNVGF---------------------SAVSSSLLSLTGLESLFLS 85

Query: 123 SNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQF 159
           ++H++G +         L SL+LS N L+GP+      
Sbjct: 86  NSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSL 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN 37
           LS + L+G IP +MS +   + +DLSNN LSG IP  
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (313), Expect = 3e-34
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 25/152 (16%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L G IPP+++++    +L +++  +SG IP     ++ L+  D S N+LSG +P S  SL
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLET-LDLSSN 124
           P+LV +    N +SG                         IP++ GS  KL T + +S N
Sbjct: 149 PNLVGITFDGNRISGA------------------------IPDSYGSFSKLFTSMTISRN 184

Query: 125 HLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLT 156
            L+G IPP+ +++    ++LS N L G   + 
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (297), Expect = 6e-32
 Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 1   LSRSLLNGT--IPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGG 57
           LS   L     IP S++ +   +FL +   N L G IP     L +L    +++ ++SG 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 58  IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE 117
           IP     + +LV L  S N LSG                         +P +I SL  L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGT------------------------LPPSISSLPNLV 152

Query: 118 TLDLSSNHLSGPIPPSMSSMTRLS--LNLSYNDLTGPIP 154
            +    N +SG IP S  S ++L   + +S N LTG IP
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  117 bits (296), Expect = 7e-32
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 27/156 (17%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           ++ + ++G IP  +S++K    LD S N LSG +P +   L  L+      N +SG IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 61  SFCSLPSLV-WLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
           S+ S   L   + +S+N L+G+                        IP    +L  L  +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGK------------------------IPPTFANL-NLAFV 202

Query: 120 DLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           DLS N L G       S      ++L+ N L   + 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (258), Expect = 2e-26
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 52/197 (26%)

Query: 1   LSRSLLNGTIPPSMSEMKN-FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP 59
              + ++G IP S       F+ + +S N L+G+IP  +  L  L   DLS N L G   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEP------------SGRIP 107
             F S  +   + L+KN L+ +L              +                  G +P
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-------------GKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 108 ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSI 167
           + +  L+ L +L++S N+L G IP                            Q F+  + 
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-----------------------GNLQRFDVSA- 297

Query: 168 YMGNADLCSPPLTTKCS 184
           Y  N  LC  PL   C+
Sbjct: 298 YANNKCLCGSPLPA-CT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.2 bits (230), Expect = 2e-22
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 28/136 (20%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSK-NDLS 79
            D  N    G +         +   DLS  +L     IP+S  +LP L +L +   N+L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 80  GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR 139
           G                         IP  I  L +L  L ++  ++SG IP  +S +  
Sbjct: 91  GP------------------------IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 140 L-SLNLSYNDLTGPIP 154
           L +L+ SYN L+G +P
Sbjct: 127 LVTLDFSYNALSGTLP 142

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L      S         LDLS   +       ++ L  L    L+ N +      
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTA----------FTGFPEFITEPSGRIPENI 110
           +F  L SL  L   + +L+      + +                F          +PE  
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---------LPEYF 145

Query: 111 GSLQKLETLDLSSNHLSGPIPPSMSSMTRL-----SLNLSYNDLTGPIP 154
            +L  LE LDLSSN +       +  + ++     SL+LS N +    P
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           T+  +   ++    LD  ++ L      S +  L  L+  D+S+          F  L S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  LK++ N                             +P+    L+ L  LDLS   L 
Sbjct: 447 LEVLKMAGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLE 483

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLTGPIPLT 156
              P + +S++ L  LN+S+N+        
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 22  FLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
            LDLS N L      ++    EL V DLS   +      ++ SL  L  L L+ N +   
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 82  LFVALQNCT-------AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL-SGPIPPS 133
              A    +         T         +      IG L+ L+ L+++ N + S  +P  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 134 MSSMTRLS-LNLSYNDLTGPIP 154
            S++T L  L+LS N +     
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYC 166

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 27/158 (17%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIP 59
           +S +          + + +   L ++ N        + +  L  L   DLS   L    P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
            +F SL SL  L +S N+                                   L  L+ L
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSL------------------------DTFPYKCLNSLQVL 523

Query: 120 DLSSNHLSGPIPPSMSSMTRL--SLNLSYNDLTGPIPL 155
           D S NH+       +         LNL+ ND       
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 29/156 (18%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
            S   +        S    +  L+L N           + L     K L+  S  GG   
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAF 341

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           S   LPSL +L LS+N LS                        G   ++      L+ LD
Sbjct: 342 SEVDLPSLEFLDLSRNGLSF----------------------KGCCSQSDFGTTSLKYLD 379

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPL 155
           LS N +   +  +   + +L  L+  +++L      
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 16/169 (9%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSF----LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG 56
           LS + +       +  +         LDLS N ++   P  ++ +  L    L NN  S 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL 214

Query: 57  GIPA-SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRI 106
            +       L  L   +L   +   E  +   + +A  G            ++      I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 107 PENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPL 155
            +    L  + +  L S  +      S +   +  L L          L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTL 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 28/179 (15%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGI---PASFCS 64
            I P   +      L L NN  S  +     +GL  L V  L                 +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 65  LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE----FITEPSGRIPENIGSLQKLETLD 120
           L  L  L + +  L+   +        F          +   +    ++       + L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 121 LSSNHLSGPIPPSMSSMTRLS--------------------LNLSYNDLTGPIPLTKQF 159
           L +          + S+ RL+                    L+LS N L+     ++  
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 23/167 (13%), Positives = 54/167 (32%), Gaps = 37/167 (22%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGE-------------------IPSNWEGLEELMVKDL 49
            +  ++  +       + N+    E                       W+ L++L   ++
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 50  SNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPEN 109
            N      +P    +LP +  + ++ N                    +       +   +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRG--------------ISGEQLKD--DWQALAD 300

Query: 110 IGSLQKLETLDLSSNHL-SGPIPPSMSSMTRLS-LNLSYNDLTGPIP 154
               +K++ + +  N+L + P+  S+  M +L  L   YN L G +P
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 15/170 (8%), Positives = 49/170 (28%), Gaps = 9/170 (5%)

Query: 1   LSRSLLNGTIPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI 58
             R     T        +  +     ++++     I  +     +       +N+++  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLET 118
             +   L  L    +  +    E               ++             +L+ L  
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTD 253

Query: 119 LDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSI 167
           +++ +      +P  + ++  +  +N++ N       L   +Q   D  +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 19/169 (11%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG-------EIPSNWEGLEELMVKDLSNNS 53
           LS + ++       S     S ++L  N+L+        +   N++    L   DL  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 54  LSGGIPASF--CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEP------SGR 105
           L+  +   F   +LP LV + LS N  S        N +   GF                
Sbjct: 500 LTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 106 IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
            PE I     L  L + SN +         +++   L++  N       
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS--VLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 36/161 (22%)

Query: 4   SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPS--NWEGLEELMVKDLSNNSLSGGIPAS 61
           +L    +  S+ +MK    L+   N L G++P+  +   L  L   +L+ N ++      
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL---NLAYNQITEIPANF 372

Query: 62  FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDL 121
                 +  L  + N L                 P            +  S+  +  +D 
Sbjct: 373 CGFTEQVENLSFAHNKL--------------KYIPNIF---------DAKSVSVMSAIDF 409

Query: 122 SSNHLSG-------PIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           S N +         P+ P+      + S+NLS N ++    
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 35/161 (21%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNN--------ILSGEIPSNWEGLEELMVKDLSNN 52
           +        +P  +  +     ++++ N            +  ++    E++ +  +  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 53  SLSGG-IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIG 111
           +L    +  S   +  L  L+   N L G                              G
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEG-------------------------KLPAFG 350

Query: 112 SLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTG 151
           S  KL +L+L+ N ++           ++ +L+ ++N L  
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 42/163 (25%)

Query: 8   GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG-------GIPA 60
             + P+  +  N S ++LSNN +S      +     L   +L  N L+            
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI--GSLQKLET 118
           +F +   L  + L  N L+                          + ++    +L  L  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK-------------------------LSDDFRATTLPYLVG 517

Query: 119 LDLSSNHLSGPIPPSMSSMTRLS-------LNLSYNDLTGPIP 154
           +DLS N  S   P    + + L         +   N      P
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWE--GLEELMVKDLSNNSLSG-------GI 58
            IP +     +    L  ++N L   IP+ ++   +  +   D S N +          +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTA----------FTGFPEFITEPSGRIPE 108
             +     ++  + LS N +S          +            T  P+          E
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK---NSLKDENE 482

Query: 109 NIGSLQKLETLDLSSNHLSGPIPPS--MSSMTRLS-LNLSYNDLTG 151
           N  +   L ++DL  N L+  +      +++  L  ++LSYN  + 
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 8/151 (5%)

Query: 13  SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG----IPASFCSLPSL 68
           S++     + L L     SG +P     L EL V  L ++          P    +  S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITE--PSGRIPENIGSLQKLETLDLSSNHL 126
              +  +                     + I        I ++     K   +   SN++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLTGPIPLT 156
           +  +  ++  +T+L    +  +         
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICE 225

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 16/165 (9%), Positives = 38/165 (23%), Gaps = 17/165 (10%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG----EIPSNWEGLEELMVKDLSNNSLSG 56
           L     +G +P ++ ++     L L ++          P           K         
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 57  GIPAS--FCSLPSLVWLKLSKNDLSGELFVALQNCTA---FTGFPEFITEPSGRIPENIG 111
                        L+   ++ +     +  + +              IT     + + + 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF----VSKAVM 203

Query: 112 SLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLT 156
            L KL    + ++                + N  Y        L 
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAW----ENENSEYAQQYKTEDLK 244

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 37/151 (24%)

Query: 9   TIPPS--MSEMKNFSFLDLSNNILSGEIPS---NWEGLEEL---MVKDLSNNSLSGGIPA 60
            +      + +     +DLS N  S   P+   N   L+       +D   N      P 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
                PSL  L++  ND+                           + E I     +  LD
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-------------------------VNEKI--TPNISVLD 593

Query: 121 LSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150
           +  N         +          L Y+   
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/136 (14%), Positives = 32/136 (23%), Gaps = 36/136 (26%)

Query: 24  DLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF 83
           + S      +  +NW         +   +        S  S   +  L L     SG   
Sbjct: 46  NWSQQGFGTQPGANWN-------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGR-- 96

Query: 84  VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTR 139
                                 +P+ IG L +LE L L S+          P  +S+   
Sbjct: 97  ----------------------VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 140 L-SLNLSYNDLTGPIP 154
                           
Sbjct: 135 DEQKQKMRMHYQKTFV 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 25/155 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L+ + L      + +     + LD+  N +S   P   + L  L V +L +N LS     
Sbjct: 32  LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +F    +L  L L  N +                                   + L TLD
Sbjct: 92  TFAFCTNLTELHLMSNSIQKI------------------------KNNPFVKQKNLITLD 127

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           LS N LS     +   +  L  L LS N +     
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 24/152 (15%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIP 59
           L+++ ++     + S + +   LDL  N +  E+    W GLE +    LS N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
            SF  +PSL  L L +  L                            P     L+ L  L
Sbjct: 448 NSFALVPSLQRLMLRRVALKN----------------------VDSSPSPFQPLRNLTIL 485

Query: 120 DLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
           DLS+N+++      +  + +L  L+L +N+L 
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 26/172 (15%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + L+     + +   N + L L +N +     + +   + L+  DLS+N LS     
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 61  SFCSLPSLVWLKLSKNDLSG---ELFVALQNCT---------AFTGFPEFITEPSGRIPE 108
           +   L +L  L LS N +     E      N +             F           P 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS----------PG 189

Query: 109 NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS----LNLSYNDLTGPIPLT 156
              ++ +L  L L++  L   +   +      +    L+LS + L+     T
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 9e-17
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 1   LSRSLLNGTIPPSMSEMK--NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI 58
           LS S L+ T   +   +K  N + LDLS N L+     ++  L +L    L  N++    
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLET 118
             S   L ++ +L L ++     +     +  +                 +   L+ LE 
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID----------DFSFQWLKCLEH 333

Query: 119 LDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSI 167
           L++  N + G      + +  L  L+LS +  +      + F +     +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 33/156 (21%)

Query: 8   GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS--------GGIP 59
            + P     ++N + LDLSNN ++       EGLE+L + DL +N+L+        GG  
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
                L  L  L L  N                               E    L +L+ +
Sbjct: 530 YFLKGLSHLHILNLESNGFDEI------------------------PVEVFKDLFELKII 565

Query: 120 DLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           DL  N+L+       ++   L SLNL  N +T    
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 28/175 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFS--FLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI 58
           LS + +       +    N S   L+LS+N +    P  +  +  L    L+N  L   +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 59  PASFC---SLPSLVWLKLSKNDLSGELFVALQNCT------------AFTGFPEFITEPS 103
               C   +  S+  L LS + LS                                    
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG------- 264

Query: 104 GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTK 157
               ++   L +LE   L  N++      S+  +  +  LNL  +     I L  
Sbjct: 265 ---NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 28/172 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWE----GLEELMVKDLSNNSLSG 56
           +  + + G      + + N  +L LSN+  S    +N          L + +L+ N +S 
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 57  GIPASFCSLPSLVWLKLSKNDLSGEL-FVALQNCTA----------FTGFPEFITEPSGR 105
               +F  L  L  L L  N++  EL     +              +             
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT--------- 446

Query: 106 IPENIGSLQKLETLDLSSNHLSG--PIPPSMSSMTRL-SLNLSYNDLTGPIP 154
              +   +  L+ L L    L      P     +  L  L+LS N++     
Sbjct: 447 -RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 34/174 (19%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILS--------GEIPSNWEGLEELMVKDLSNN 52
           LS + +       +  ++    LDL +N L+        G      +GL  L + +L +N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 53  SLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGS 112
                    F  L  L  + L  N+L+                                +
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTL------------------------PASVFNN 582

Query: 113 LQKLETLDLSSNHLSGPIPPSMS-SMTRLS-LNLSYNDLTGPIPLTKQFQTFND 164
              L++L+L  N ++         +   L+ L++ +N           F  + +
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.8 bits (207), Expect = 1e-18
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 36/171 (21%)

Query: 8   GTIPPSMSEMKNFSFLDLSNNILSG-------------------EIPSNWEGLEELMVKD 48
             I  ++  +     +  +N+  +                        +W  L++L   +
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 49  LSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPE 108
           L N      +P     LP L  L ++ N                      +     R+ +
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---------------AAQLKADWTRLAD 542

Query: 109 NIGSLQKLETLDLSSNHLSG-PIPPSMSSMTRLS-LNLSYNDLTGPIPLTK 157
           +  +  K++   +  N+L   P   S+  M +L  L+  +N +        
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 32/174 (18%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS----- 55
           +     N +      +  N S + LS N +       +     +    LSNN ++     
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 56  --GGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSG 104
                  ++ +   L  + L  N L+      L +    T  P            +    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS--- 767

Query: 105 RIPENIGSLQKLETLDL------SSNHLSGPIPPSMSSMTRL-SLNLSYNDLTG 151
             P    +  +L+   +        N +    P  +++   L  L +  ND+  
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 8/165 (4%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           +    +       ++           N  +      +   L++  + +L+N      I  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISK 442

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +   L  L  +  + +  +            +        +       +  +L+ L  ++
Sbjct: 443 AIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFND 164
           L +      +P  +  +  L SLN++ N       L   +    D
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 5e-15
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 28/153 (18%)

Query: 9   TIPP--SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVK-----DLSNNSLSGGIPAS 61
            IP   +   +     +D S N +  E  +    +++          LS N +       
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 62  FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDL 121
           F +   +  + LS N +              T  PE           N  +   L T+DL
Sbjct: 693 FATGSPISTIILSNNLM--------------TSIPE---NSLKPKDGNYKNTYLLTTIDL 735

Query: 122 SSNHLSGPIPPSM--SSMTRL-SLNLSYNDLTG 151
             N L+  +      +++  L ++++SYN  + 
Sbjct: 736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 25/146 (17%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIP--ASFCSL 65
               +       + L L  N +  EIP +     +++     S+N L   IP   +  S+
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
             +  +  S N +                    I+                 T+ LS N 
Sbjct: 644 YVMGSVDFSYNKI--------------GSEGRNISCSMD-----DYKGINASTVTLSYNE 684

Query: 126 LSGPIPPSMSSMTRLS-LNLSYNDLT 150
           +        ++ + +S + LS N +T
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 9   TIPPSM--SEMKNFSFLDLSNNILSGEIPSNWEGLEELMV------KDLSNNSLSGGIPA 60
           ++      + +   S +D+S N  S   P+      +L        +D   N +    P 
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              + PSL+ L++  ND+                           + E +    +L  LD
Sbjct: 801 GITTCPSLIQLQIGSNDIRK-------------------------VDEKL--TPQLYILD 833

Query: 121 LSSNHL-SGPIPPSMSSMTRLSLNLSYNDLT 150
           ++ N   S  +      +      L Y+   
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 19/166 (11%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L+     G +P ++ ++     L    +  +       +      + +   + +      
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 61  SF-CSLPSLVWLKLSKNDLSG---------ELFVALQNCTAFTGFPEFITEPSGRIPENI 110
            F      L    L ++ ++          +  ++L++          IT     I + I
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF----ISKAI 444

Query: 111 GSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLT 156
             L KL+ +  +++  +               N  Y        L+
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDW----EDANSDYAKQYENEELS 486

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)

Query: 48  DLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIP 107
            L+     G +P +   L  L  L    +  +    +            E          
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 108 ENIGS-LQKLETLDLSSNHLS-----GPIPP-SMSSMTRLSLNLSYNDLTG 151
           +      Q+L   DL  + ++      PI   S  S+    +    N +T 
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 15/149 (10%), Positives = 34/149 (22%), Gaps = 32/149 (21%)

Query: 48  DLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIP 107
           +   +           +   +  L L+     G                         +P
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR------------------------VP 340

Query: 108 ENIGSLQKLETLDLSSNHLSGPIP--------PSMSSMTRLSLNLSYNDLTGPIPLTKQF 159
           + IG L +L+ L   ++  +            P MS   +  + + Y  +          
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 160 QTFNDPSIYMGNADLCSPPLTTKCSSDLR 188
                 +I            +     D +
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIP 59
           LS +        +  E      LDL+   L   +  S ++ L  L V +LS++ L     
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPENI 110
             F  LP+L  L L  N         +Q   +                ++          
Sbjct: 443 QLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEILVLSFCDLSSI---DQHAF 496

Query: 111 GSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
            SL+ +  +DLS N L+     ++S +  + LNL+ N ++  +P
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 35/164 (21%), Positives = 51/164 (31%), Gaps = 17/164 (10%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L +         +         LDL+   LS E+PS   GL  L    LS N        
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIG 111
           S  + PSL  L +  N    EL                         I   S      + 
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTG-----CLENLENLRELDLSHDDIET-SDCCNLQLR 373

Query: 112 SLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           +L  L++L+LS N        +     +L  L+L++  L     
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
            S ++L      + S + N +FLDL+   +       ++    L    L+ N L      
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +     +L  L   +  +S   F+ L N                         + LE+L 
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHN------------------------QKTLESLY 135

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTG 151
           L SNH+S    P      +L  L+   N +  
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 30/159 (18%)

Query: 1   LSRSLLNGTIPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVK--DLSNNSLSG 56
              +     I   +    +++       +       P+ +EGL E+ V+  +L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 57  GIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116
               +F     L  L L+   LS                          +P  +  L  L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-------------------------ELPSGLVGLSTL 303

Query: 117 ETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           + L LS+N        S S+   L  L++  N     + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 24/172 (13%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNIL--SGEIPSNWEGLEELMVKDLSNNSLSGG 57
           +  +     +       ++N   LDLS++ +  S         L  L   +LS N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 58  IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPE 108
              +F   P L  L L+   L           + F               +        +
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKV-----KDAQSPFQNLHLLKVLNLSHSLLD---ISSEQ 443

Query: 109 NIGSLQKLETLDLSSNHLSGPI---PPSMSSMTRL-SLNLSYNDLTGPIPLT 156
               L  L+ L+L  NH          S+ ++ RL  L LS+ DL+      
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 28/168 (16%), Positives = 47/168 (27%), Gaps = 10/168 (5%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L+R  +      +         L L+ N L     +   G + L         +S     
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE------FITEPSGRIPENIGSLQ 114
              +  +L  L L  N +S                         I   S     ++    
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK---VLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 115 KLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTF 162
            L +L+L+ N ++G  P +  S    SLN         I    +  T 
Sbjct: 181 NL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 26/166 (15%)

Query: 1   LSRSLLNGTIPPS-MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI- 58
           L+ + L      S    +     L+LS+++L       ++GL  L   +L  N    G  
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 59  --PASFCSLPSLVWLKLSKNDLSGELFVALQNCTA----------FTGFPEFITEPSGRI 106
               S  +L  L  L LS  DLS     A  +              T             
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS---------- 516

Query: 107 PENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTG 151
            E +  L+ +  L+L+SNH+S  +P  +  +++  ++NL  N L  
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
             ++ ++      +   K    L L +N +S          E+L V D  NN++      
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 61  SFCSLPSL--VWLKLSKNDLSGELFVALQNCT----AFTGFPEFITEPSGRIPENIGSLQ 114
              SL     + L L+ ND++G    A  +       F G    +    G     I SL 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 115 KLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
                D+    +S  +   +  M+  S+NL  +       
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 23/159 (14%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            +  +   ++    LD  ++ L      S +  LE+L+  D+S  +        F  L S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 68  LVWLKLSKNDLSGELFV-ALQNCTA----------FTGFPEFITEPSGRIPENIGSLQKL 116
           L  LK++ N            N T                               +L +L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS----------WGVFDTLHRL 499

Query: 117 ETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           + L++S N+L        + +  L +L+ S+N +     
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 37/156 (23%), Positives = 55/156 (35%), Gaps = 26/156 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L      S S      +LDLS   +       W GL  L    L+ N +    P 
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           SF  L SL  L   +  L+                              IG L  L+ L+
Sbjct: 99  SFSGLTSLENLVAVETKLASL------------------------ESFPIGQLITLKKLN 134

Query: 121 LSSNHLSG-PIPPSMSSMTRL-SLNLSYNDLTGPIP 154
           ++ N +    +P   S++T L  ++LSYN +     
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 23/163 (14%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP 59
              S L      S    ++   +LD+S      +    + GL  L    ++ NS      
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 60  AS-FCSLPSLVWLKLSKNDLSGELFVALQNCTA----------FTGFPEFITEPSGRIPE 108
           ++ F +  +L +L LSK  L    +                                   
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD----------SS 515

Query: 109 NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150
           +   L  L TLD S N +             L+  NL+ N + 
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 6/162 (3%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG-GIP 59
           L+ + +    P S S + +   L      L+         L  L   ++++N +    +P
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 60  ASFCSLPSLVWLKLSKNDLSG---ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116
           A F +L +LV + LS N +          L+         +    P   I +      KL
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

Query: 117 ETLDLSSNHLSGPIPP-SMSSMTRL-SLNLSYNDLTGPIPLT 156
             L L  N  S  I    + ++  L    L   +      L 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 19/167 (11%)

Query: 10  IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVK----DLSNNSLSGGIPASFCSL 65
           +P   S + N   +DLS N +     ++ + L E        D+S N +   I       
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG 203

Query: 66  PSLVWLKLSKNDLSGEL----FVALQNCT-------AFTGFPEFITEPSGRIPENIGSLQ 114
             L  L L  N  S  +       L            F      +      I E +  + 
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-LEIFEPSIMEGLCDVT 262

Query: 115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ 160
             E   L+  +           +  +S ++L+   +     + K F+
Sbjct: 263 IDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 10/137 (7%)

Query: 19  NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
                 L+      +    +  L  +    L+  S+                L + +  L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 79  SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT 138
                + L    + T     +T   G I     +L  L  LDLS N LS     S S + 
Sbjct: 320 KQFPTLDLPFLKSLT-----LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 139 RLS---LNLSYNDLTGP 152
             S   L+LS+N     
Sbjct: 375 TNSLRHLDLSFNGAIIM 391

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
             P     + +   + +    L  E+P   +    L    L+ N L   +PAS  SL  L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +               C   T  PE +   S         L  L++L L    +  
Sbjct: 153 RELSIR-------------ACPELTELPEPLA--STDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 129 PIPPSMSSMTRL-SLNLSYNDLT 150
            +P S++++  L SL +  + L+
Sbjct: 198 -LPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 26/143 (18%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           ++P S++ ++N   L + N+ LS  +      L +L   DL   +     P  F     L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L L              +C+               +P +I  L +LE LDL       
Sbjct: 256 KRLILK-------------DCSNLL-----------TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 129 PIPPSMSSMTRL-SLNLSYNDLT 150
            +P  ++ +     + +  +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 37/144 (25%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
                 L+L +  L  + P     L  L    +    L   +P +      L  L L++N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARN 137

Query: 77  DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136
            L                           +P +I SL +L  L + +      +P  ++S
Sbjct: 138 PLR-------------------------ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 137 MTRLS----------LNLSYNDLT 150
                          L L +  + 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 20/118 (16%)

Query: 40  GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE------LFVALQNCTAFT 93
           G E L       ++                    ++   +          +  +   A  
Sbjct: 13  GRENL---YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 94  GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
              + +            +      L+L S  L    P     ++ L  + +    L 
Sbjct: 70  ATADLL---------EDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM 117

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 28/168 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEI-------PSNWEGLEELMVKDLSNNS 53
           ++++         +      S LDLS+N   GE        P  +  L+ L +++    +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 54  LSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA--------FTGFPEFITEPSGR 105
            SG   A   +   L  L LS N L         +  +        FTG  +        
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-------- 267

Query: 106 IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGP 152
           +P+ +    KL  LDLS N L     PS   + ++ +L+L  N     
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 38/168 (22%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 1   LSRSLLNGTIPPSMSE--MKNFSFLDLSNNILSGEIPSNWE-------GLEELMVKDLSN 51
           L    + GT PP + E    + + L+L N   +       E       GL+ L    ++ 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL---SIAQ 158

Query: 52  NSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF-------ITEPSG 104
                         P+L  L LS N   GE  +    C       +        +  PSG
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 105 RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR--LSLNLSYNDLT 150
                  +  +L+ LDLS N L                SLNLS+  L 
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 22/164 (13%)

Query: 20  FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS---FCSLPSLVWLKLSKN 76
              L   +        ++      L    +    +   I         +  L  L L   
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 77  DLSGELFVALQNCT------------AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSN 124
           +++G     L   T            ++     ++ E    +         L+ L ++  
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG------LKVLSIAQA 159

Query: 125 HLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSI 167
           H        +     LS L+LS N   G   L         P++
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS--- 79
           L  +NN +S    S  +G + +    L+NN ++            + +L L  N++    
Sbjct: 104 LHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 80  -GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT 138
             EL  +            FI +    +   +    KL+TLDLSSN L+  + P   S  
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD----VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAA 214

Query: 139 RL-SLNLSYNDLT 150
            +  ++L  N L 
Sbjct: 215 GVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 36/155 (23%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILS----GEIPSNWEGLEELMVKDLSNNSLSG 56
           L+ + +               +LDL  N +      E+ ++ + LE L   +L  N +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL---NLQYNFIY- 182

Query: 57  GIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116
            +         L  L LS N L+                          +     S   +
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLA-------------------------FMGPEFQSAAGV 216

Query: 117 ETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
             + L +N L   I  ++     L   +L  N   
Sbjct: 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 32/135 (23%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
              +    ++++ L   + S  +    +   DLS N LS    A       L  L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 77  DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136
            L                              ++ SL  L TLDL++N++       +  
Sbjct: 69  VLYE--------------------------TLDLESLSTLRTLDLNNNYVQ-----ELLV 97

Query: 137 MTRL-SLNLSYNDLT 150
              + +L+ + N+++
Sbjct: 98  GPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           ++ S L   +        N   LDLS N LS    ++     +L + +LS+N L      
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              SL +L  L L+ N +  EL     +          I+     +  +    Q  + + 
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHAANNNISR----VSCSR--GQGKKNIY 126

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
           L++N ++          +R+  L+L  N++ 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 28/142 (19%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
                 +       L+L  N +  ++        +L   DLS+N L+  +   F S   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
            W+ L  N L                           I + +   Q LE  DL  N    
Sbjct: 217 TWISLRNNKLV-------------------------LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
                  S  +    ++   + 
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 23/105 (21%)

Query: 57  GIPASFCSLPSLVWLKLSKNDLSG---ELFVALQNCT-------AFTGFPEFITEPSGRI 106
            I     +       K++ + L      L  +  N           +             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS---------- 50

Query: 107 PENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
             ++    KLE L+LSSN L       + S++ L +L+L+ N + 
Sbjct: 51  AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS--- 79
           L  +NN +S    S  +G + +    L+NN ++            + +L L  N++    
Sbjct: 104 LHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 80  -GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT 138
             EL  +            FI +    +   +    KL+TLDLSSN L+  + P   S  
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD----VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAA 214

Query: 139 RL-SLNLSYNDLT 150
            +  ++L  N L 
Sbjct: 215 GVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 36/155 (23%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILS----GEIPSNWEGLEELMVKDLSNNSLSG 56
           L+ + +               +LDL  N +      E+ ++ + LE L   +L  N +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL---NLQYNFIY- 182

Query: 57  GIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116
            +         L  L LS N L+                          +     S   +
Sbjct: 183 DVKGQ-VVFAKLKTLDLSSNKLA-------------------------FMGPEFQSAAGV 216

Query: 117 ETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
             + L +N L   I  ++     L   +L  N   
Sbjct: 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 32/135 (23%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
              +    ++++ L   + S  +    +   DLS N LS    A       L  L LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 77  DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136
            L                              ++ SL  L TLDL++N++       +  
Sbjct: 69  VLYE--------------------------TLDLESLSTLRTLDLNNNYVQ-----ELLV 97

Query: 137 MTRL-SLNLSYNDLT 150
              + +L+ + N+++
Sbjct: 98  GPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 28/147 (19%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
                 L+L  N +  ++        +L   DLS+N L+  +   F S   + W+ L  N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224

Query: 77  DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS 136
            L                           I + +   Q LE  DL  N           S
Sbjct: 225 KLV-------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 137 MTRLSLNLSYNDLTGPIPLTKQFQTFN 163
             +    ++   +       ++  T  
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 26/159 (16%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L+      ++       L+LS+N+L      + E L  L   DL+NN +      
Sbjct: 41  LSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----- 93

Query: 61  SFCSLPSLVWLKLSKN---DLSGELFVALQNCT----AFTGFPEFITEPSGRIPENIGSL 113
                PS+  L  + N    +S       +N        T               + G  
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR----------DLDEGCR 143

Query: 114 QKLETLDLSSNHLSG-PIPPSMSSMTRL-SLNLSYNDLT 150
            +++ LDL  N +         +S   L  LNL YN + 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 7/147 (4%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG-IPASFCSLPS 67
            + P        +++ L NN L   I       + L   DL  N    G +   F     
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 68  LVWLKLSKN-DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSL--QKLETLDLSSN 124
           +  +       L+G+        T          +      + + +L  ++   L    +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 125 HLSGPIPPSMSSMTRL-SLNLSYNDLT 150
                +     +  R   ++       
Sbjct: 324 ETER-LECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 27/103 (26%)

Query: 57  GIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGS-LQK 115
            I     +       K++ + L                          +   ++      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-------------------------QALASLRQSAWN 35

Query: 116 LETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
           ++ LDLS N LS      ++  T+L  LNLS N L   + L  
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLES 78

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLP 66
           T+  S    ++    L+L +      I       L  L + DL ++ +    P +F  L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
            L  L+L    LS  +                             +L+ L  LDLS N +
Sbjct: 98  HLFELRLYFCGLSDAVL----------------------KDGYFRNLKALTRLDLSKNQI 135

Query: 127 SG-PIPPSMSSMTRL-SLNLSYNDLT 150
               + PS   +  L S++ S N + 
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 23  LDLSNNILSG-EIPSNWEGLEELMVKDLSNNSLSGGIPASFCS-LPSLVWLKLSKNDLSG 80
           + LS N L   +I      +  L +  L+ N  S        S  PSL  L L +N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 81  ELFVALQNCTAFTGFPE---------FITEPSGRIPENI-GSLQKLETLDLSSNHLSGPI 130
                L     F G            ++      +P  +   L  L  L L+SN L+  +
Sbjct: 466 AWETELCW-DVFEGLSHLQVLYLNHNYLNS----LPPGVFSHLTALRGLSLNSNRLTV-L 519

Query: 131 PPSMSSMTRLSLNLSYNDLTGPIP 154
             +        L++S N L  P P
Sbjct: 520 SHNDLPANLEILDISRNQLLAPNP 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVK--DLSNNSLSGGI 58
              + ++ +   S+    +        + +     + + GL    V+  DLS+  +    
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPEN 109
              F +L  L  L L+ N ++           AF G             + E    +  +
Sbjct: 283 SRVFETLKDLKVLNLAYNKINK------IADEAFYGLDNLQVLNLSYNLLGE----LYSS 332

Query: 110 I-GSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
               L K+  +DL  NH++     +   + +L +L+L  N LT
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 18/182 (9%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L+ + +N     +   + N   L+LS N+L     SN+ GL ++   DL  N ++     
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 61  SFCSLPSLVWLKLSKNDLS--------GELFVALQNCTAFTGFPEFITEP--------SG 104
           +F  L  L  L L  N L+         ++F++                         + 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 105 RIPENIGSLQKLETLDLSSNHLSGPIPPSM-SSMTRL-SLNLSYNDLTGPIPLTKQFQTF 162
            I   +  +  L+ L L+ N  S        S    L  L L  N L         +  F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 163 ND 164
             
Sbjct: 477 EG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 31/144 (21%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           ++   +   +K+   L+L+ N ++      + GL+ L V +LS N L     ++F  LP 
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           + ++ L KN ++      +     F                    L+KL+TLDL  N L+
Sbjct: 340 VAYIDLQKNHIA------IIQDQTFKF------------------LEKLQTLDLRDNALT 375

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLT 150
                ++  +  +  + LS N L 
Sbjct: 376 -----TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 10  IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLE--ELMVKDLSNNSLSGGIPASFCSLP- 66
           + PS  ++ +   +D S+N +        E L+   L    L+ NSL   +   +     
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
               + L   D+SG  +              F    S     ++     +       +++
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGN-------FSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 127 SGPIPPSMSSMTRLS---LNLSYNDLT 150
             P   + + + R S   L+LS+  + 
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 28/139 (20%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
                  L+ ++P      E L    LS N +     +SF  L  L  L+L        +
Sbjct: 9   AFYRFCNLT-QVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-S 141
                                    E   +L  L  LDL S+ +    P +   +  L  
Sbjct: 65  D-----------------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101

Query: 142 LNLSYNDLTGPIPLTKQFQ 160
           L L +  L+  +     F+
Sbjct: 102 LRLYFCGLSDAVLKDGYFR 120

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 15  SEMKNFSFLDLSNNILSGEIPSN-----WEGLEELMVKDLSNNSLSGGIPASFCSLPSLV 69
           SE  +   L L  N+L     +      +EGL  L V  L++N L+   P  F  L +L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 70  WLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP 129
            L L+ N L              T         +            LE LD+S N L  P
Sbjct: 508 GLSLNSNRL--------------TVLSHNDLPAN------------LEILDISRNQLLAP 541

Query: 130 IPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCSSDLRN 189
            P    S++   L++++N       L   F  +    +   N  +  PP    C      
Sbjct: 542 NPDVFVSLS--VLDITHNKFICECEL-STFINW----LNHTNVTIAGPPADIYCVYPDSF 594

Query: 190 AGVEDGEVEDEDGSEELLFLF 210
           +GV    +  E   EE +   
Sbjct: 595 SGVSLFSLSTEGCDEEEVLKS 615

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 15/179 (8%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEI--PSNWEGLEELMVKDLSNNSLSG- 56
           L  S +   + P     + +   L L    LS  +     +  L+ L   DLS N +   
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 57  GIPASFCSLPSLVWLKLSKN---DLSGELFVALQNCT------AFTGFPEFITEPSGRIP 107
            +  SF  L SL  +  S N    +       LQ  T      A       ++   G+  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 108 ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPS 166
               ++  LE LD+S N  +  I  + S+    S   S       +     F    DP 
Sbjct: 199 NPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 28/155 (18%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LSR  +      +   + + S L L+ N +       + GL  L        +L+     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
               L +L  L ++ N +                        S ++PE   +L  LE LD
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLTNLEHLD 155

Query: 121 LSSNHLSGPIPPSMSSMTRL-----SLNLSYNDLT 150
           LSSN +       +  + ++     SL+LS N + 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 26/152 (17%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           LS + L      S         LDLS   +       ++ L  L    L+ N +      
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +F  L SL  L   + +L+                              IG L+ L+ L+
Sbjct: 95  AFSGLSSLQKLVAVETNLASL------------------------ENFPIGHLKTLKELN 130

Query: 121 LSSNHL-SGPIPPSMSSMTRL-SLNLSYNDLT 150
           ++ N + S  +P   S++T L  L+LS N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           T+  +   ++    LD  ++ L      + +  L  L+  D+S+          F  L S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  LK++ N                             +P+    L+ L  LDLS   L 
Sbjct: 447 LEVLKMAGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLE 483

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLT 150
              P + +S++ L  LN++ N L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 29/166 (17%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP 59
              S L      S+   ++N  +LD+S+          + GL  L V  ++ NS      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 60  A-SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLE 117
              F  L +L +L LS+  L                          ++      SL  L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLE-------------------------QLSPTAFNSLSSLQ 497

Query: 118 TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTF 162
            L+++SN L          +T L  + L  N      P       +
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 31/138 (22%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS--GGIPASFCSLPSLVWLKLS 74
           +K+   L  ++N            L  L   DLS N LS  G    S     SL +L LS
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 75  KNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM 134
            N +                           +  N   L++LE LD   ++L      S+
Sbjct: 382 FNGVI-------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 135 -SSMTRL-SLNLSYNDLT 150
             S+  L  L++S+    
Sbjct: 417 FLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 32/182 (17%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGG---IPASFCS 64
            I P   +      L L NN  S  +     +GL  L V  L                 +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 65  LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSG-----RIPENIG-------- 111
           L  L  L + +  L+   +        F       +         R+ +           
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 112 ------------SLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTKQ 158
                        L+ L+ L  +SN        S   +  L  L+LS N L+     ++ 
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 159 FQ 160
             
Sbjct: 369 DF 370

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 12/151 (7%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           T   ++  + N   L L+ + +S   P +N   +  L   +L  N       +   ++  
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSL---NLGANHNLS-DLSPLSNMTG 156

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L +L ++++ +       + N T        +          + SL  L       N ++
Sbjct: 157 LNYLTVTESKVKD--VTPIANLTDLYSL--SLNYNQIEDISPLASLTSLHYFTAYVNQIT 212

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
              P  +++MTRL SL +  N +T   PL  
Sbjct: 213 DITP--VANMTRLNSLKIGNNKITDLSPLAN 241

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 20/152 (13%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVW 70
             +  + N  +L+L+ N ++   P SN   L  L    +  N ++    ++  +L +L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL---YIGTNKIT--DISALQNLTNLRE 114

Query: 71  LKLSKNDLSGELFVALQNCTAFT----GFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
           L L+++++S      L N T       G    ++         + ++  L  L ++ + +
Sbjct: 115 LYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-----DLSPLSNMTGLNYLTVTESKV 167

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
               P  ++++T L SL+L+YN +    PL  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISPLAS 197

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 7e-11
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVW 70
             ++ + +  +     N ++   P +N   L  L    + NN ++   P    +L  L W
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSL---KIGNNKITDLSP--LANLSQLTW 247

Query: 71  LKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130
           L++  N +S     A+++ T        +          + +L +L +L L++N L    
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKML--NVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 131 PPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
              +  +T L +L LS N +T   PL  
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 31/143 (21%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           T    ++ +   ++L++  N +S    +  + L +L + ++ +N +S    +   +L  L
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQL 289

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L L+ N L  E                          E IG L  L TL LS NH++ 
Sbjct: 290 NSLFLNNNQLGNE------------------------DMEVIGGLTNLTTLFLSQNHITD 325

Query: 129 PIPPSMSSMTRL-SLNLSYNDLT 150
             P  ++S++++ S + +   + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           T   +  E+++ + L ++   ++       E L  L   +L+ N ++   P    +L  L
Sbjct: 35  TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKL 90

Query: 69  VWLKLSKNDLSG-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
             L +  N ++       L N        + I++ S      + +L K+ +L+L +NH  
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNL 145

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
                 +S+MT L  L ++ + +    P+  
Sbjct: 146 S-DLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 15  SEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKL 73
           +++       L    ++  +     E + +L    ++   ++  I      L +L +L L
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEELESITKL---VVAGEKVA-SIQG-IEYLTNLEYLNL 73

Query: 74  SKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS 133
           + N ++      L N    T    +I          + +L  L  L L+ +++S   P  
Sbjct: 74  NGNQITD--ISPLSNLVKLTNL--YIGTNKITDISALQNLTNLRELYLNEDNISDISP-- 127

Query: 134 MSSMTRL-SLNLSYNDLTGPIP 154
           ++++T++ SLNL  N     + 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 33/136 (24%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
           L      ++   P     L E +   L   S++  +      L S+  L ++   ++   
Sbjct: 5   LATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-S 141
                                    + I  L  LE L+L+ N ++   P  +S++ +L +
Sbjct: 59  ------------------------IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 142 LNLSYNDLTGPIPLTK 157
           L +  N +T    L  
Sbjct: 93  LYIGTNKITDISALQN 108

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 45/226 (19%), Positives = 69/226 (30%), Gaps = 43/226 (19%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           T+P   + +K+   LD+ NN L+  +P     LE +   +  NN L+  +P       SL
Sbjct: 114 TLPELPASLKH---LDVDNNQLT-MLPELPALLEYI---NADNNQLTM-LPEL---PTSL 162

Query: 69  VWLKLSKNDLSG--ELFVALQ----NCTAFTGFPEFITEPSG----------------RI 106
             L +  N L+   EL  +L+    +       P                         I
Sbjct: 163 EVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222

Query: 107 PENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPS 166
           PENI SL    T+ L  N LS  I  S+S  T                  +         
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 167 IYMGNADLCSPPLTTKCSSDLRNAGVEDGEVEDEDGSEELLFLFEH 212
                     P       S + +A       E E+ +       + 
Sbjct: 283 AVTAWF----PENKQSDVSQIWHA------FEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 41/142 (28%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           ++P ++      + L+++ N L   +P     LE L   D  +N LS  +P       SL
Sbjct: 73  SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPEL---PASL 122

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +  N L+                          +PE    L+ +   +  +N L+ 
Sbjct: 123 KHLDVDNNQLT-------------------------MLPELPALLEYI---NADNNQLTM 154

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
            +P   +S+    L++  N LT
Sbjct: 155 -LPELPTSLEV--LSVRNNQLT 173

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 18  KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
              + L L +N L+ +          L+  DLS N L   +   F  +  L  L +S N 
Sbjct: 226 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 78  LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSM 137
           L                           +      +  L+ LDLS NHL   +  +    
Sbjct: 284 LV-------------------------ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 317

Query: 138 TRL-SLNLSYNDLT 150
            RL +L L +N + 
Sbjct: 318 DRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIP 59
           +     +         + N   +   N+ +  ++P+   +   ++ + +L++  +     
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 60  ASFCSLPSLVWLKLSKNDLS---GELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQK 115
            +F    ++  L +  N +      +F  +   T        ++     +P  I  +  K
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS----LPRGIFHNTPK 142

Query: 116 LETLDLSSNHLSGPIPPSM-SSMTRL-SLNLSYNDLT 150
           L TL +S+N+L   I      + T L +L LS N LT
Sbjct: 143 LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +PP +   +   + L L  N LS  +P   +    +L    +SNN+L      +F +  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
           SL  L+LS N L+      + +              S  +   +     +E LD S N +
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTLAIPIAVEELDASHNSI 217

Query: 127 SGPIPPSMSSMTRLSLNLSYNDLT 150
           +    P    +T   L L +N+LT
Sbjct: 218 NVVRGPVNVELT--ILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 31/137 (22%)

Query: 19  NFSFLDLSNNILSGEIPSNWE--GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
           +  F D+  ++ + ++   +E   L    +    N+++     A   S   +  L L+  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 77  DLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM- 134
            +                           I          ++ L +  N +   +PP + 
Sbjct: 80  QIE-------------------------EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVF 113

Query: 135 SSMTRL-SLNLSYNDLT 150
            ++  L  L L  NDL+
Sbjct: 114 QNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 30/120 (25%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            I      +M+    L +SNN L   +    + +  L V DLS+N L   +  +      
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 319

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L L  N +                           +   + +   L+ L LS N   
Sbjct: 320 LENLYLDHNSIV-------------------------TLK--LSTHHTLKNLTLSHNDWD 352

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 9   TIPP-SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           +IP  ++S +     L L +  ++     +++ L  L V ++S+      +  +     +
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPEN-IGSLQKLETLDLSSNHL 126
           L  L ++  +L+                          +P   +  L  L  L+LS N +
Sbjct: 226 LTSLSITHCNLT-------------------------AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLT 150
           S      +  + RL  + L    L 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 32/147 (21%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
           T+     +   +   L+L+ NI+S  +    +  L  L    L +N L       F  L 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNH 125
           +L  L +S+N +                           + + +   L  L++L++  N 
Sbjct: 105 NLTKLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDND 139

Query: 126 LSGPIPPSM-SSMTRL-SLNLSYNDLT 150
           L   I     S +  L  L L   +LT
Sbjct: 140 LVY-ISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLP 66
            IP  + + + N + LD+S N +   +     + L  L   ++ +N L      +F  L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 67  SLVWLKLSKNDLS---GELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLS 122
           SL  L L K +L+    E    L            I      I +     L +L+ L++S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA----IRDYSFKRLYRLKVLEIS 208

Query: 123 SNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
                  + P+      L SL++++ +LT
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 29/152 (19%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIP 59
           +S      T+ P+     N + L +++  L+  +P      L  L   +LS N +S    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETL 119
           +    L  L  ++L    L+      ++   AF G                  L  L  L
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-----VVEP-YAFRG------------------LNYLRVL 301

Query: 120 DLSSNHLSGPIPPSM-SSMTRL-SLNLSYNDL 149
           ++S N L+  +  S+  S+  L +L L  N L
Sbjct: 302 NVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 28/141 (19%)

Query: 23  LDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
           +          +P         L   DL  N +       F S P L  L+L++N +S  
Sbjct: 16  VLCHRKRFV-AVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVS-- 69

Query: 82  LFVALQNCTAFTGFPE---------FITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIP 131
              A++   AF               +      IP  +   L  L  LD+S N +   + 
Sbjct: 70  ---AVEPG-AFNNLFNLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVI-LL 120

Query: 132 PSM-SSMTRL-SLNLSYNDLT 150
             M   +  L SL +  NDL 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 29/122 (23%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +P      +    FL+LS N +S  I  +    L  L    L    L+   P +F  L 
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNH 125
            L  L +S N L+                          + E++  S+  LETL L SN 
Sbjct: 297 YLRVLNVSGNQLT-------------------------TLEESVFHSVGNLETLILDSNP 331

Query: 126 LS 127
           L+
Sbjct: 332 LA 333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 15/160 (9%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
            + S  +        E      L +    L  ++ + +  LE++    + N+ +     +
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIG 111
               L SL +L LS+N +       L+N      +P           +     +  E + 
Sbjct: 329 FSQHLKSLEFLDLSENLMV---EEYLKNSACKGAWPSLQTLVLSQNHLRSMQ-KTGEILL 384

Query: 112 SLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
           +L+ L +LD+S N    P+P S     ++  LNLS   + 
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 32/155 (20%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWE---GLEELMVKDLSNNSLS-- 55
           +  S +          +K+  FLDLS N++  E   N         L    LS N L   
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 56  GGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQK 115
                   +L +L  L +S+N                             +P++    +K
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-------------------------PMPDSCQWPEK 411

Query: 116 LETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLT 150
           +  L+LSS  +   +   +     + L++S N+L 
Sbjct: 412 MRFLNLSSTGIRV-VKTCIPQTLEV-LDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 26/145 (17%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            I         N   L L ++ ++      +  L  L   DLS+N LS    + F  L S
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L +L L  N         L   + F                    L  L+TL + +    
Sbjct: 100 LKYLNLMGNPYQ-----TLGVTSLFPN------------------LTNLQTLRIGNVETF 136

Query: 128 GPIPPSM-SSMTRL-SLNLSYNDLT 150
             I     + +T L  L +    L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 34/142 (23%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
            +P S    +   FL+LS+  +   +       + L V D+SNN+L          LP L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVK--TCIPQTLEVLDVSNNNLDS-FSLF---LPRL 453

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +S+N L                           +P+       L  + +S N L  
Sbjct: 454 QELYISRNKLK-------------------------TLPDA-SLFPVLLVMKISRNQLKS 487

Query: 129 PIPPSMSSMTRL-SLNLSYNDL 149
                   +T L  + L  N  
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 19/166 (11%), Positives = 51/166 (30%), Gaps = 15/166 (9%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP 59
           +        I     + + + + L++    L      + + + ++    L  +  +  + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 60  ASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG----------FPEFITEPSGRIPEN 109
                L S+ +L+L   +L+   F  L      +             +       ++   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 110 IGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS----LNLSYNDLTG 151
           I  L ++E  D + N L    P     ++ L     + +    +  
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 7   NGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLP 66
           + T   + ++M + +++ L+N  ++ ++ +  E    +    ++N   +   P     L 
Sbjct: 33  SSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLS 88

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
           +L  L++   D++ +    L   T+ T      +     I   I +L K+ ++DLS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
              I P + ++  L SLN+ ++ +     +  
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDGVHDYRGIED 179

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 28/138 (20%)

Query: 15  SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74
           S + N   L +    ++ +   N  GL  L + D+S+++    I     +LP +  + LS
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 75  KNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM 134
            N                      IT+        + +L +L++L++  + +       +
Sbjct: 145 YNGA--------------------ITDIMP-----LKTLPELKSLNIQFDGVHDYRG--I 177

Query: 135 SSMTRL-SLNLSYNDLTG 151
               +L  L      + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 27/128 (21%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           +    +     P++S + + + LD+S++     I +    L ++   DLS N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              +LP L  L +  + +                               I    KL  L 
Sbjct: 155 -LKTLPELKSLNIQFDGVHD--------------------------YRGIEDFPKLNQLY 187

Query: 121 LSSNHLSG 128
             S  + G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 39  EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN---DLSGELFVALQNCTAFTGF 95
              +  +   L  +S +     +   + SL ++ L+     DL+G     ++        
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDL 71

Query: 96  PEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
              I          I  L  LE L +    ++    P++S +T L  L++S++     I 
Sbjct: 72  --TINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 35/151 (23%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           +    ++++ N   L  +NN +S   P      L+EL    L+ N L      +  SL +
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL---SLNGNQLKD--IGTLASLTN 244

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L L+ N +S                              +  L KL  L L +N +S
Sbjct: 245 LTDLDLANNQISN--------------------------LAPLSGLTKLTELKLGANQIS 278

Query: 128 GPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
              P  ++ +T L +L L+ N L    P++ 
Sbjct: 279 NISP--LAGLTALTNLELNENQLEDISPISN 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 35/158 (22%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L ++ +  T+    +++   + L      +        E L  L   + SNN L+   P 
Sbjct: 31  LGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP- 85

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              +L  LV + ++ N ++                              + +L  L  L 
Sbjct: 86  -LKNLTKLVDILMNNNQIAD--------------------------ITPLANLTNLTGLT 118

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
           L +N ++   P  + ++T L  L LS N ++    L+ 
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 34/150 (22%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           T    +  + N + L+LS+N +S    S   GL  L      N            +L +L
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTL 179

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +S N +S                              +  L  LE+L  ++N +S 
Sbjct: 180 ERLDISSNKVSD--------------------------ISVLAKLTNLESLIATNNQISD 213

Query: 129 PIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
             P  +  +T L  L+L+ N L     L  
Sbjct: 214 ITP--LGILTNLDELSLNGNQLKDIGTLAS 241

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVW 70
             +S +KN ++L L  N +S   P S+   L+ L      NN +S    +S  +L ++ W
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL---FFYNNKVSD--VSSLANLTNINW 357

Query: 71  LKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130
           L    N +S                              + +L ++  L L+    +   
Sbjct: 358 LSAGHNQISD--------------------------LTPLANLTRITQLGLNDQAWTNAP 391

Query: 131 PPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSI 167
               ++++  +   +               ++ +P I
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 18/136 (13%), Positives = 46/136 (33%), Gaps = 32/136 (23%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
             ++ +    +I ++   L E M   L   +++  +      L  +  L+  +  +    
Sbjct: 6   ATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--- 59

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-S 141
                                    + +  L  L  ++ S+N L+   P  + ++T+L  
Sbjct: 60  -----------------------SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 142 LNLSYNDLTGPIPLTK 157
           + ++ N +    PL  
Sbjct: 95  ILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 6/140 (4%)

Query: 15  SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74
           S +     L   NN +S    S+   L  +      +N +S   P    +L  +  L L+
Sbjct: 328 SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

Query: 75  KNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM 134
               +        N +                P  I         D++ N  S     S 
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVSY 441

Query: 135 SSMTRLSLNLSYNDLTGPIP 154
           +    +++       +G + 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 18  KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
              + L L +N L+ +          L+  DLS N L   +   F  +  L  L +S N 
Sbjct: 232 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 78  LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSM 137
           L                           +      +  L+ LDLS NHL   +  +    
Sbjct: 290 LV-------------------------ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 323

Query: 138 TRL-SLNLSYNDLT 150
            RL +L L +N + 
Sbjct: 324 DRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 32/147 (21%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +P ++    +    L+L++  +  EI +        +    +  N++    P  F ++P
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNH 125
            L  L L +NDLS                          +P  I  +  KL TL +S+N+
Sbjct: 124 LLTVLVLERNDLS-------------------------SLPRGIFHNTPKLTTLSMSNNN 158

Query: 126 LSGPIPPSM-SSMTRL-SLNLSYNDLT 150
           L   I      + T L +L LS N LT
Sbjct: 159 LER-IEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 31/135 (22%)

Query: 21  SFLDLSNNILSGEIPSNWE--GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL 78
            F D+  ++ + ++   +E   L    +    N+++     A   S   +  L L+   +
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 79  SGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SS 136
                                      I          ++ L +  N +   +PP +  +
Sbjct: 88  E-------------------------EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQN 121

Query: 137 MTRL-SLNLSYNDLT 150
           +  L  L L  NDL+
Sbjct: 122 VPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +PP +   +   + L L  N LS  +P   +    +L    +SNN+L      +F +  
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
           SL  L+LS N L+      + +              S  +   +     +E LD S N +
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHAN--------VSYNLLSTLAIPIAVEELDASHNSI 223

Query: 127 SGPIPPSMSSMTRLSLNLSYNDLT 150
           +    P    +T   L L +N+LT
Sbjct: 224 NVVRGPVNVELT--ILKLQHNNLT 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
           P +        +D+ NN L  ++P     LE +      NN L   +P    +LP L  +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLEE-LP-ELQNLPFLTAI 200

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
               N L  +L     +  +       + E        + +L  L T+   +N L   +P
Sbjct: 201 YADNNSLK-KLPDLPLSLESIVAGNNILEELP-----ELQNLPFLTTIYADNNLLKT-LP 253

Query: 132 PSMSSMTRLSLNLSYNDLT 150
               S+   +LN+  N LT
Sbjct: 254 DLPPSLE--ALNVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 25/137 (18%)

Query: 18  KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
           +    L+L+N  LS  +P     LE L     S NSL+  +P    SL SL+    +   
Sbjct: 71  RQAHELELNNLGLS-SLPELPPHLESL---VASCNSLTE-LPELPQSLKSLLVDNNNLKA 125

Query: 78  LSGELFVALQ----NCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS 133
           LS +L   L+    +       PE            + +   L+ +D+ +N L   +P  
Sbjct: 126 LS-DLPPLLEYLGVSNNQLEKLPE------------LQNSSFLKIIDVDNNSLKK-LPDL 171

Query: 134 MSSMTRLSLNLSYNDLT 150
             S+    +    N L 
Sbjct: 172 PPSLE--FIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
              P +  +   + +   NN L  ++P     LE +      NN L         +LP L
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFL 239

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             +    N L   L     +  A      ++T+    +PE   SL  L+  +   + LS 
Sbjct: 240 TTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLS- 293

Query: 129 PIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFN 163
            +PP++       LN S N++     L    +  N
Sbjct: 294 ELPPNLY-----YLNASSNEIRSLCDLPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
              P +  +   + +   NN+L   +P     LE L   ++ +N L+  +P    SL  L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLTD-LPELPQSLTFL 282

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
              +   + LS EL   L    A           S  I         LE L++S+N L  
Sbjct: 283 DVSENIFSGLS-ELPPNLYYLNAS----------SNEIRSLCDLPPSLEELNVSNNKLIE 331

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
            +P     + R  L  S+N L 
Sbjct: 332 -LPALPPRLER--LIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 15  SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74
               +   L++SNN L  E+P+    LE L     S N L+  +P       +L  L + 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPEL---PQNLKQLHVE 365

Query: 75  KNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM 134
            N L  E     ++              +  + E     Q L+ L + +N L    P   
Sbjct: 366 YNPLR-EFPDIPESVEDLRM--------NSHLAEVPELPQNLKQLHVETNPLRE-FPDIP 415

Query: 135 SSMTRLSLNLSYNDLTGPIPLTKQ 158
            S+    L ++   +  P     +
Sbjct: 416 ESVE--DLRMNSERVVDPYEFAHE 437

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 22/142 (15%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
            +P     +K+ +    + +      P       E+ V  L +           C     
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD-----------CLDRQA 73

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L+L+   LS  L     +  +       +TE    +PE   SL+ L   + +   LS 
Sbjct: 74  HELELNNLGLS-SLPELPPHLESLVASCNSLTE----LPELPQSLKSLLVDNNNLKALSD 128

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
            +PP +       L +S N L 
Sbjct: 129 -LPPLLE-----YLGVSNNQLE 144

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           ++P   SE+     L   NN L+  +P+   GL+EL    +S N L+  +P        L
Sbjct: 195 SLPTLPSELYK---LWAYNNRLT-SLPALPSGLKEL---IVSGNRLTS-LPVL---PSEL 243

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +S N L+  L +      + + +   +T     +PE++  L    T++L  N LS 
Sbjct: 244 KELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTR----LPESLIHLSSETTVNLEGNPLSE 298

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
               ++  +T  S       + 
Sbjct: 299 RTLQALREIT--SAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 22/142 (15%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           ++P     +   S        L   +PS    L       +  N L+  +P      P L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQLT-SLPV---LPPGL 143

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
             L +S N L+  L            +   +T     +P     LQ+   L +S N L+ 
Sbjct: 144 QELSVSDNQLA-SLPALPSELCKLWAYNNQLTS----LPMLPSGLQE---LSVSDNQLAS 195

Query: 129 PIPPSMSSMTRLSLNLSYNDLT 150
            +P   S + +  L    N LT
Sbjct: 196 -LPTLPSELYK--LWAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 40/129 (31%)

Query: 23  LDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
           L++  + L+  +P      +  L    + +N+L+  +PA     P L  L++S N L+  
Sbjct: 45  LNVGESGLT-TLPDCLPAHITTL---VIPDNNLTS-LPAL---PPELRTLEVSGNQLT-- 94

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141
                                   +P     L +L        HL   +P  +       
Sbjct: 95  -----------------------SLPVLPPGLLELSIFSNPLTHLP-ALPSGLC-----K 125

Query: 142 LNLSYNDLT 150
           L +  N LT
Sbjct: 126 LWIFGNQLT 134

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 35/151 (23%)

Query: 4   SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPA-S 61
            L N    P   +    ++L +S   L+  IP +  E L EL    L +N +   I    
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNEL---HLDHNKIQ-AIELED 212

Query: 62  FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLD 120
                 L  L L  N +                           I       L  L  L 
Sbjct: 213 LLRYSKLYRLGLGHNQIR-------------------------MIENGSLSFLPTLRELH 247

Query: 121 LSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
           L +N LS  +P  +  +  L  + L  N++T
Sbjct: 248 LDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 29/142 (20%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            IP  +   +  + L L +N +   I         +L    L +N +      S   LP+
Sbjct: 186 GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L L  N LS                         R+P  +  L+ L+ + L +N+++
Sbjct: 243 LRELHLDNNKLS-------------------------RVPAGLPDLKLLQVVYLHTNNIT 277

Query: 128 GPIPPSMSSMTRLSLNLSYNDL 149
                    +        YN +
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGI 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 32/130 (24%)

Query: 23  LDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
           L +S N L  EIP N    L EL    + +N +       F  L ++  +++  N L   
Sbjct: 107 LYISKNHLV-EIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-- 160

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM-SSMTRL 140
                                +           KL  L +S   L+G IP  +  ++   
Sbjct: 161 ---------------------NSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN-- 196

Query: 141 SLNLSYNDLT 150
            L+L +N + 
Sbjct: 197 ELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 29/144 (20%)

Query: 19  NFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
           +   +  S+  L   +P         L   DL NN +S      F  L  L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 78  LSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
           +S      +    AF+   +          + E    IP N+     L  L +  N +  
Sbjct: 90  IS-----KIHE-KAFSPLRKLQKLYISKNHLVE----IPPNL--PSSLVELRIHDNRIRK 137

Query: 129 PIPPSM-SSMTRL-SLNLSYNDLT 150
            +P  + S +  +  + +  N L 
Sbjct: 138 -VPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 24/132 (18%)

Query: 9   TIPP-SMSEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            I    +        L L +N +   I +     L  L    L NN LS  +PA    L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLK 264

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPS-------------GRIPENI-GS 112
            L  + L  N+++      +     F      +                   +       
Sbjct: 265 LLQVVYLHTNNIT-----KVGV-NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 113 LQKLETLDLSSN 124
           +     +   + 
Sbjct: 319 VTDRLAIQFGNY 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 27/145 (18%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSN--WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
           T+  +   ++    LD  ++ L  ++     +  L  L+  D+S+          F  L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
           SL  LK++ N                             +P+    L+ L  LDLS   L
Sbjct: 151 SLEVLKMAGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQL 187

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLT 150
               P + +S++ L  LN+S+N+  
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 24/144 (16%)

Query: 19  NFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
           + + +  ++  L+  +P+        L   +L +N L       F  L  L  L LS N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 78  LSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
           LS   F    +  +  G             +      +  N   L++LE LD   ++L  
Sbjct: 64  LS---FKGCCS-QSDFGTTSLKYLDLSFNGVI----TMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 PIPPSM-SSMTRL-SLNLSYNDLT 150
               S+  S+  L  L++S+    
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGI 58
           ++ +       P + +E++N +FLDLS   L  ++       L  L V ++S+N+     
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 59  PASFCSLPSLVWLKLSKNDLS 79
              +  L SL  L  S N + 
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM 236

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 26/141 (18%)

Query: 23  LDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN----D 77
           L+L +N L+  IP+     L +L    L NN +      +F  +PSL  L L +      
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 78  LSGELFVALQN-------CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130
           +S   F  L N              P                L KL+ LDLS NHLS   
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPNL------------TPLIKLDELDLSGNHLSAIR 223

Query: 131 PPSMSSMTRL-SLNLSYNDLT 150
           P S   +  L  L +  + + 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 32/146 (21%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            +P  +S   N   L+L  N +   I  N  + L  L +  LS N +      +F  L +
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L+L  N L+      + N  AF                    L KL+ L L +N + 
Sbjct: 114 LNTLELFDNRLT-----TIPN-GAFVY------------------LSKLKELWLRNNPIE 149

Query: 128 GPIPPSM-SSMTRL-SLNLS-YNDLT 150
             IP    + +  L  L+L     L+
Sbjct: 150 S-IPSYAFNRIPSLRRLDLGELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 32/140 (22%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            I       + N  +L+L+   L  EIP+    L +L   DLS N LS   P SF  L  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L + ++ +       ++   AF                    LQ L  ++L+ N+L+
Sbjct: 233 LQKLWMIQSQIQ-----VIER-NAFDN------------------LQSLVEINLAHNNLT 268

Query: 128 GPIPP----SMSSMTRLSLN 143
             +P      +  + R+ L+
Sbjct: 269 L-LPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 28/115 (24%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVW 70
           P+++ +     LDLS N LS  I     +GL  L    +  + +      +F +L SLV 
Sbjct: 201 PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 71  LKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSN 124
           + L+ N+L+                          +P ++   L  LE + L  N
Sbjct: 260 INLAHNNLT-------------------------LLPHDLFTPLHHLERIHLHHN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 26/141 (18%)

Query: 23  LDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN----D 77
           L+L +N L+  IPS   E L +L    L NN +      +F  +PSL+ L L +      
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 78  LSGELFVALQNCTA-------FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130
           +S   F  L N              P                L  LE L++S NH     
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNL------------TPLVGLEELEMSGNHFPEIR 234

Query: 131 PPSMSSMTRL-SLNLSYNDLT 150
           P S   ++ L  L +  + ++
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 32/135 (23%)

Query: 19  NFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
            FS +  +   LS E+P         L   +L  N++      +F  L  L  L+L +N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 78  LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM-SS 136
           +       ++   AF G                  L  L TL+L  N L+  IP      
Sbjct: 111 IR-----QIEV-GAFNG------------------LASLNTLELFDNWLTV-IPSGAFEY 145

Query: 137 MTRL-SLNLSYNDLT 150
           +++L  L L  N + 
Sbjct: 146 LSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 32/140 (22%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
            I       + N  +L+L    +  ++P+    L  L   ++S N      P SF  L S
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS 127
           L  L +  + +S      ++   AF G                  L  L  L+L+ N+LS
Sbjct: 244 LKKLWVMNSQVS-----LIER-NAFDG------------------LASLVELNLAHNNLS 279

Query: 128 GPIPP----SMSSMTRLSLN 143
             +P      +  +  L L+
Sbjct: 280 S-LPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 28/115 (24%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVW 70
           P+++ +     L++S N    EI      GL  L    + N+ +S     +F  L SLV 
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 71  LKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSN 124
           L L+ N+LS                          +P ++   L+ L  L L  N
Sbjct: 271 LNLAHNNLS-------------------------SLPHDLFTPLRYLVELHLHHN 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 34/136 (25%)

Query: 23  LDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
           L L  N ++ ++ +   +GL  L    LS NS+S     S  + P L  L L+ N L   
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-- 253

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG------PIPPSMS 135
                                  ++P  +   + ++ + L +N++S         P   +
Sbjct: 254 -----------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 136 SMTRLS-LNLSYNDLT 150
                S ++L  N + 
Sbjct: 291 KKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 32/145 (22%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLP 66
            I P   + +     L LS N L  E+P    + L+EL    +  N ++    + F  L 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL---RVHENEITKVRKSVFNGLN 145

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHL 126
            ++ ++L  N L            AF G                  ++KL  + ++  ++
Sbjct: 146 QMIVVELGTNPLKSSGIEN----GAFQG------------------MKKLSYIRIADTNI 183

Query: 127 SGPIPPSMSSMTRL-SLNLSYNDLT 150
           +  IP  +     L  L+L  N +T
Sbjct: 184 TT-IPQGL--PPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 29/144 (20%)

Query: 19  NFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
           +   +  S+  L  ++P +       L   DL NN ++      F +L +L  L L  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 78  LSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
           +S      +    AF    +          + E    +PE +   + L+ L +  N ++ 
Sbjct: 88  IS-----KISP-GAFAPLVKLERLYLSKNQLKE----LPEKM--PKTLQELRVHENEITK 135

Query: 129 PIPPSM-SSMTRL-SLNLSYNDLT 150
            +  S+ + + ++  + L  N L 
Sbjct: 136 -VRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 16/128 (12%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +  +    + N + L LS N +S  + +        L    L+NN L   +P       
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHK 263

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPENI-GSLQKL 116
            +  + L  N++S             T              +      I  +    +   
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRCVYVR 321

Query: 117 ETLDLSSN 124
             + L + 
Sbjct: 322 AAVQLGNY 329

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 26/152 (17%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS--GGI 58
            + S          S++  F  LD SNN+L+  +  N   L EL    L  N L     I
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 59  PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLET 118
                 + SL  L +S+N +S                             +    + L +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVS-----------------------YDEKKGDCSWTKSLLS 403

Query: 119 LDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLT 150
           L++SSN L+  I   +    ++ L+L  N + 
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKV-LDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
           L++S N +S    S+   L +L +  +S+N +     + F     L +L LS N L    
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85

Query: 83  FVALQNCT-------AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS 135
                N         AF   P           +  G++ +L+ L LS+ HL       ++
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPI---------CKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 136 SMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYM 169
            +    + L   +  G     +  Q FN  S+++
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 6/139 (4%)

Query: 17  MKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN 76
           +K  S   + +++        +E    + +K+ + +            +   + L  S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 77  ---DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS 133
              D   E    L            + E S +I E    ++ L+ LD+S N +S      
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 134 M-SSMTRL-SLNLSYNDLT 150
             S    L SLN+S N LT
Sbjct: 394 DCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 16  EMKNFSFLDLSNNIL-SGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74
           +MK+   LD+S N +   E   +    + L+  ++S+N L+  I       P +  L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 75  KNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM 134
            N +                           IP+ +  L+ L+ L+++SN L   +P  +
Sbjct: 430 SNKIK-------------------------SIPKQVVKLEALQELNVASNQLKS-VPDGI 463

Query: 135 -SSMTRL-SLNLSYN 147
              +T L  + L  N
Sbjct: 464 FDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 16/149 (10%)

Query: 18  KNFSFLDLSNNILSGEIPSNW-----EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
               +  +SN  L G++           L+ L +  + ++         +    ++    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 73  LSKNDLSGELFVALQNCTAFT----GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS- 127
            + +       +     + F                    N G L +LETL L  N L  
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKE 362

Query: 128 -GPIPPSMSSMTRL-SLNLSYNDLTGPIP 154
              I    + M  L  L++S N ++    
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPS 67
            +P  ++       +DLS N ++    +++  L++L    +   +    I   +F  L S
Sbjct: 27  ELPAHVNY------VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 68  LVWLKLSKN---DLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSS 123
           L+ LKL  N    L    F  L N    T     +      +  N    L  LE L L  
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD--GAVLSGNFFKPLTSLEMLVLRD 138

Query: 124 NHLSGPIPPSM-SSMTRL-SLNLSYNDLT 150
           N++    P S   +M R   L+L++N + 
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 34/142 (23%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            +  S+ S   +   L L+ N ++ +I  N + GL  L+  +LS N L       F +L 
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNH 125
            L  L LS N +                           + +     L  L+ L L +N 
Sbjct: 348 KLEVLDLSYNHIR-------------------------ALGDQSFLGLPNLKELALDTNQ 382

Query: 126 LSGPIPP----SMSSMTRLSLN 143
           L   +P      ++S+ ++ L+
Sbjct: 383 LKS-VPDGIFDRLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%)

Query: 1   LSRSLLNGTIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSL-SGG 57
           + +      I  +    + +   L L  N    ++ +  + GL  L V  L+  +L    
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAV 119

Query: 58  IPA-SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL 116
           +    F  L SL  L L  N++       +Q  + F                    +++ 
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIK-----KIQPASFFLN------------------MRRF 156

Query: 117 ETLDLSSNHLSGPIPP----SMSSMTRLSLNLSYNDLT 150
             LDL+ N +   I      +        L LS   L 
Sbjct: 157 HVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 16  EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSK 75
            + + +  D++   L  E   N      +   DLS N     +   F    +   ++   
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 76  NDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM- 134
              S        N  +  G   F    +        S   ++T DLS + +   +  S+ 
Sbjct: 246 LSNS-------YNMGSSFGHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFA-LLKSVF 295

Query: 135 SSMTRL-SLNLSYNDLT 150
           S  T L  L L+ N++ 
Sbjct: 296 SHFTDLEQLTLAQNEIN 312

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
           + L  N +S    +++     L +  L +N L+    A+F  L  L  L LS N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM-SSMTRL- 140
                +   F G                  L +L TL L    L   + P +   +  L 
Sbjct: 97  -----DPATFHG------------------LGRLHTLHLDRCGLQE-LGPGLFRGLAALQ 132

Query: 141 SLNLSYNDLT 150
            L L  N L 
Sbjct: 133 YLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 34/142 (23%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSLP 66
            + P +   +    +L L +N L   +P + +  L  L    L  N +S     +F  L 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 67  SLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNH 125
           SL  L L +N ++                          +  +    L +L TL L +N+
Sbjct: 178 SLDRLLLHQNRVA-------------------------HVHPHAFRDLGRLMTLYLFANN 212

Query: 126 LSGPIPP----SMSSMTRLSLN 143
           LS  +P      + ++  L LN
Sbjct: 213 LSA-LPTEALAPLRALQYLRLN 233

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 2   SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS 61
            RS           E  +   L L++  L+  +  + E L  +   DLS+N L   +P +
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPA 481

Query: 62  FCSLPSLVWLKLSKNDLSG-ELFVALQNCTAF-------TGFPEFITEPSGRIPENIGSL 113
             +L  L  L+ S N L   +    L                            + + S 
Sbjct: 482 LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI---------QPLVSC 532

Query: 114 QKLETLDLSSNHLS 127
            +L  L+L  N L 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 30/104 (28%)

Query: 48  DLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIP 107
            L++  L+  +      L  +  L LS N L                           +P
Sbjct: 447 HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-------------------------ALP 479

Query: 108 ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
             + +L+ LE L  S N L       ++++ RL  L L  N L 
Sbjct: 480 PALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQ 521

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 22  FLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE 81
            L++  + L    P + + ++ +    L        +        S+  L+L   DL   
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 82  LFVALQNCTAFTGFPEFIT--------EPSGRIPENIGSLQKLETLDLSSNHLSGPIPP- 132
            F  L          +  T        E   ++ + +  +  L  L+ S N L   +P  
Sbjct: 238 HFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDG 295

Query: 133 ---SMSSMTRLSLN 143
               ++S+ ++ L+
Sbjct: 296 IFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 17/157 (10%)

Query: 9   TIPPSM--SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSL 65
           T+  +   S +     L + N     +I      GL  L   ++  + L    P S  S+
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 66  PSLVWLKLSKNDLS---GELFVALQN-------CTAFTGFPEFITEPSGRIPENIGSLQK 115
            ++  L L                 +        T    F    +E S     ++     
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--FSELSTGETNSLIKKFT 255

Query: 116 LETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLTG 151
              + ++   L   +   ++ ++ L  L  S N L  
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 34/133 (25%)

Query: 22  FLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG 80
               S+  L+  IPS   E ++ L   DLSNN ++    +      +L  L L+ N ++ 
Sbjct: 35  ICKGSSGSLN-SIPSGLTEAVKSL---DLSNNRITYISNSDLQRCVNLQALVLTSNGIN- 89

Query: 81  ELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SSMT 138
                                    I E+   SL  LE LDLS N+LS  +  S    ++
Sbjct: 90  ------------------------TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLS 124

Query: 139 RL-SLNLSYNDLT 150
            L  LNL  N   
Sbjct: 125 SLTFLNLLGNPYK 137

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 9   TIPPSM--SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASFCSL 65
            +      + + N   L LS+N L+  I S  +  +  L   DLS+N L       F  L
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPE---------FITEPSGRIPENIGSLQKL 116
            +L  L L  N +       +    AF    +          I+     + ++   L KL
Sbjct: 112 QALEVLLLYNNHIV-----VVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 117 ETLDLSSNHLSGPIPP----SMSSMTRLSLNLSYN 147
             LDLSSN L   +P      + +  +  L L  N
Sbjct: 166 MLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNN 199

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 14  MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKL 73
           +  + N + L L+ N L+ +I      L+ L    L  N +   +  S   L  L  L L
Sbjct: 61  IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116

Query: 74  SKN---DLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI 130
             N   D++G     L +         ++          +  L KL+TL L  N +S  I
Sbjct: 117 EHNGISDING-----LVHLPQLESL--YLGNNKITDITVLSRLTKLDTLSLEDNQISD-I 168

Query: 131 PPSMSSMTRL-SLNLSYNDLT 150
            P ++ +T+L +L LS N ++
Sbjct: 169 VP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
            + +E+ +   +  +N+ +   +    + L  +    L+ N L+   P    +L +L WL
Sbjct: 37  VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
            L +N +      +L++          +          +  L +LE+L L +N ++    
Sbjct: 93  FLDENKIKD--LSSLKDLKKLKSL--SLEHNGISDINGLVHLPQLESLYLGNNKITDITV 148

Query: 132 PSMSSMTRL-SLNLSYNDLT 150
             +S +T+L +L+L  N ++
Sbjct: 149 --LSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 31/113 (27%)

Query: 39  EGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF 98
           +   E +  +L   S++  +      L S+  +  + +D+                    
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK------------------- 56

Query: 99  ITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-SLNLSYNDLT 150
                  + + I  L  +  L L+ N L+  I P ++++  L  L L  N + 
Sbjct: 57  ------SV-QGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 14/166 (8%)

Query: 15  SEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
            ++K    L L +N +S +I    +   LE L    L NN ++         L  L  L 
Sbjct: 106 KDLKKLKSLSLEHNGIS-DINGLVHLPQLESL---YLGNNKIT--DITVLSRLTKLDTLS 159

Query: 73  LSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP 132
           L  N +S    V L   T       ++++        +  L+ L+ L+L S         
Sbjct: 160 LEDNQISD--IVPLAGLTKLQNL--YLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 133 SMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSP 177
             S++    ++  +   L  P  ++     +  P++     +  + 
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDD-GDYEKPNVKWHLPEFTNE 260

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 9  TIPPSMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPASFCSLPS 67
               +   +N + L + N      +      GL EL    +  + L    P +F   P 
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 68 LVWLKLSKNDLS 79
          L  L LS N L 
Sbjct: 82 LSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 27/120 (22%)

Query: 33  EIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDLSGELFVALQNCTA 91
           +   +  G E L    + N      +       L  L  L + K+ L    FVA     A
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPD---A 75

Query: 92  FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT 150
           F                      +L  L+LS N L   +         L  L LS N L 
Sbjct: 76  FHF------------------TPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 37/132 (28%)

Query: 23  LDLSNNILS---GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS 79
           ++     L+    ++P +   L       LS N L     A+      L  L L + +L 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTIL------HLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 80  GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR 139
                        T                 G+L  L TLDLS N L   +P    ++  
Sbjct: 68  -------------TKLQVD------------GTLPVLGTLDLSHNQLQS-LPLLGQTLPA 101

Query: 140 L-SLNLSYNDLT 150
           L  L++S+N LT
Sbjct: 102 LTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 13/142 (9%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
           T       +     LDLS+N L   +P   + L  L V D+S N L+     +   L  L
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 69  VWLKLSKNDLS---GELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSN 124
             L L  N+L      L          +     +TE    +P  +   L+ L+TL L  N
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQEN 182

Query: 125 HLSGPIPP---SMSSMTRLSLN 143
            L   IP        +    L+
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLH 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 35/150 (23%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L   L        ++     + LD S N ++    S  + L  L   +   N+++     
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL---NCDTNNITK---L 206

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
                  L +L  S N L+ E+                          ++  L +L   D
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EI--------------------------DVTPLTQLTYFD 239

Query: 121 LSSNHLSGPIPPSMSSMTRLSLNLSYNDLT 150
            S N L+     ++S +T  +L+    DL 
Sbjct: 240 CSVNPLTELDVSTLSKLT--TLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIP--SNWEGLEELMVKDLSNNSLSGGIPASFC 63
           +  T   S  ++   + LD  N+ ++ ++       GL +L     ++N+++  +     
Sbjct: 30  MQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKL---ICTSNNIT-TLD--LS 82

Query: 64  SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123
              +L +L    N L+      L   T        +T+       ++     L  L+ + 
Sbjct: 83  QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK------LDVSQNPLLTYLNCAR 136

Query: 124 NHLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
           N L+      +S  T+L  L+   N     + +T 
Sbjct: 137 NTLT---EIDVSHNTQLTELDCHLNKKITKLDVTP 168

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
             + ++   + L  ++N ++    S    L  L      +N L+         L  L +L
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLDLSQNTNLTYL---ACDSNKLTN---LDVTPLTKLTYL 111

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
               N L+          T        +TE       ++    +L  LD   N     + 
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNKKITKLD 165

Query: 132 PSMSSMTRL-SLNLSYNDLT 150
             ++  T+L +L+ S+N +T
Sbjct: 166 --VTPQTQLTTLDCSFNKIT 183

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 29/148 (19%)

Query: 9   TIPP-SMSEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPAS-FCSL 65
           TIP  + S + N S + +S ++   ++ S+    L ++   ++ N      I       L
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
           P L +L +    L         + T                     S      L+++ N 
Sbjct: 105 PLLKFLGIFNTGLK-----MFPDLTKV------------------YSTDIFFILEITDNP 141

Query: 126 LSGPIPPSM-SSMTRL--SLNLSYNDLT 150
               IP +    +     +L L  N  T
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 36/143 (25%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPAS-FCSL 65
            IPP   S  K    +DLSNN +S E+  + ++GL  L    L  N ++  +P S F  L
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGL 103

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSN 124
            SL  L L+ N ++                          +  +    L  L  L L  N
Sbjct: 104 FSLQLLLLNANKIN-------------------------CLRVDAFQDLHNLNLLSLYDN 138

Query: 125 HLSGPIPP----SMSSMTRLSLN 143
            L   I       + ++  + L 
Sbjct: 139 KLQT-IAKGTFSPLRAIQTMHLA 160

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 35/120 (29%)

Query: 34  IPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93
           +P     +       L  N++    P +F     L  + LS N +S              
Sbjct: 30  LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------------- 69

Query: 94  GFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SSMTRL-SLNLSYNDLT 150
                       +  +    L+ L +L L  N ++  +P S+   +  L  L L+ N + 
Sbjct: 70  -----------ELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
             +  + N   L+L +N ++    +  + L ++   +LS N L     ++   L S+  L
Sbjct: 57  EGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTL 112

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
            L+   ++      L   +       ++          +  L  L+ L + +  +S  + 
Sbjct: 113 DLTSTQITD--VTPLAGLSNLQVL--YLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LT 167

Query: 132 PSMSSMTRL-SLNLSYNDLTGPIPLTK 157
           P ++++++L +L    N ++   PL  
Sbjct: 168 P-LANLSKLTTLKADDNKISDISPLAS 193

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 15/146 (10%)

Query: 15  SEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKL 73
             + N   +    + ++  +  ++ +G+  L         ++  I      L +L+ L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTL---SAFGTGVTT-IEG-VQYLNNLIGLEL 70

Query: 74  SKNDLSG-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP 132
             N ++       L   T        +          I  LQ ++TLDL+S  ++   P 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNV-----SAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 133 SMSSMTRL-SLNLSYNDLTGPIPLTK 157
            ++ ++ L  L L  N +T   PL  
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAG 149

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 38/146 (26%)

Query: 10  IPPSMSEMKNFSFLDLSNNILSGEIPSN--WEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           IP   +E      L L+NN  +  + +   ++ L +L   + SNN ++     +F     
Sbjct: 30  IPQYTAE------LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 68  LVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHL 126
           +  + L+ N L                           +   +   L+ L+TL L SN +
Sbjct: 83  VNEILLTSNRLE-------------------------NVQHKMFKGLESLKTLMLRSNRI 117

Query: 127 SGPIPPSM-SSMTRL-SLNLSYNDLT 150
           +  +       ++ +  L+L  N +T
Sbjct: 118 TC-VGNDSFIGLSSVRLLSLYDNQIT 142

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
            + +E+ +   +  +N+ +   +    + L  +    L+ N L+   P    +L +L WL
Sbjct: 40  VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL 95

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
            L +N +      +L++          +          +  L +LE+L L +N ++    
Sbjct: 96  FLDENKVKD--LSSLKDLKKLKSL--SLEHNGISDINGLVHLPQLESLYLGNNKITDITV 151

Query: 132 PSMSSMTRL-SLNLSYNDLT 150
             +S +T+L +L+L  N ++
Sbjct: 152 --LSRLTKLDTLSLEDNQIS 169

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 23  LDLSNNILSGEIPSN-WEGLEELMVKDLSNNSL-SGGIPASFCSLPSLVWLKLSKN---D 77
           L      L+  + +     L+ L   ++++N + S  +P  F +L +L  L LS N    
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 78  LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP----S 133
           +       L          +    P   I        +L+ L L +N L   +P      
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDR 222

Query: 134 MSSMTRLSLN 143
           ++S+ ++ L+
Sbjct: 223 LTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 35/120 (29%)

Query: 34  IPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT 93
           +P + + L      DLS N L      SF S P L  L LS+ ++               
Sbjct: 26  LPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------- 65

Query: 94  GFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SSMTRL-SLNLSYNDLT 150
                       I +    SL  L TL L+ N +   +     S ++ L  L     +L 
Sbjct: 66  -----------TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 36/231 (15%), Positives = 62/231 (26%), Gaps = 71/231 (30%)

Query: 63  CSLPSLV-WLKLSKNDLSGELFVALQN-CTAFTGFPEFITEPSGRIPENIGSLQ-KLETL 119
           C +   + WL L   +    +   LQ             ++ S  I   I S+Q +L  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 120 DLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFN----------DPSIYM 169
             S  +                L L   ++       K +  FN             +  
Sbjct: 238 LKSKPY-------------ENCL-LVLLNVQNA----KAWNAFNLSCKILLTTRFKQV-- 277

Query: 170 GNADLCSPPLTTKCSSDLRNAGVEDGEVED----------EDGSEELL------------ 207
              D  S   TT  S D  +  +   EV+           +D   E+L            
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 208 FLFEHGTRIHYW--------------ILDFLWSFENQKLLEKCPILSSSMK 244
            + +       W               L+ L   E +K+ ++  +   S  
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 29/119 (24%)

Query: 8   GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPS 67
           G I    +E  N  FL L N  L   + SN   L +L   +LS N + GG+      LP+
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 68  LVWLKLSKNDLS--GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSN 124
           L  L LS N L     L                         E +  L+ L++LDL + 
Sbjct: 97  LTHLNLSGNKLKDISTL-------------------------EPLKKLECLKSLDLFNC 130

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 31/132 (23%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLSGE 81
           LDL +N LS      +  L +L +  L++N L   +PA  F  L +L  L ++ N L   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-- 98

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SSMTR 139
                                   +P  +   L  L  L L  N L   +PP +  S+T+
Sbjct: 99  -----------------------ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTK 134

Query: 140 LS-LNLSYNDLT 150
           L+ L+L YN+L 
Sbjct: 135 LTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 34/148 (22%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPAS-FCSL 65
           T+P  +  E+KN   L +++N L   +P   ++ L  L    L  N L   +P   F SL
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSL 132

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSN 124
             L +L L  N+L                           +P+ +   L  L+ L L +N
Sbjct: 133 TKLTYLSLGYNELQ-------------------------SLPKGVFDKLTSLKELRLYNN 167

Query: 125 HLSGPIPPSM-SSMTRLS-LNLSYNDLT 150
            L   +P      +T L  L L  N L 
Sbjct: 168 QLKR-VPEGAFDKLTELKTLKLDNNQLK 194

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 15  SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS 74
           + +  F  +D S+N +  ++   +  L  L    ++NN +         +LP L  L L+
Sbjct: 39  ATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 75  KNDLS 79
            N L 
Sbjct: 97  NNSLV 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 25/122 (20%)

Query: 3   RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF 62
                G +     E +   FL   N  L+  I +N   L +L   +LS+N +SGG+    
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 63  CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122
              P+L  L LS N                      I + S    E +  L+ L++LDL 
Sbjct: 85  EKCPNLTHLNLSGN---------------------KIKDLS--TIEPLKKLENLKSLDLF 121

Query: 123 SN 124
           + 
Sbjct: 122 NC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 47/166 (28%)

Query: 10  IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV 69
           +  ++S +K    L LS N +  +I S+  G+E L +  L  N +   I        +L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 70  WLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP 129
            L +S N ++                          +   I  L  L  L +S+N ++  
Sbjct: 97  ELWISYNQIA-------------------------SL-SGIEKLVNLRVLYMSNNKIT-- 128

Query: 130 IPPSMSSMTRLS-------LNLSYNDLTGPIPLTKQFQTFNDPSIY 168
              +   + +L+       L L+ N      PL   ++  N  S Y
Sbjct: 129 ---NWGEIDKLAALDKLEDLLLAGN------PLYNDYKENNATSEY 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 12  PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWL 71
            S  E+      +  N+ +   + +  +    L    LS+N +S   P     L  L  L
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90

Query: 72  KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP 131
            +++N L     +     +        + +       ++  L+ LE L + +N L   I 
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELRDTD-----SLIHLKNLEILSIRNNKLKS-IV 144

Query: 132 PSMSSMTRL-SLNLSYNDLTGPIPLTK 157
             +  +++L  L+L  N++T    LT+
Sbjct: 145 M-LGFLSKLEVLDLHGNEITNTGGLTR 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 31/132 (23%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLSGE 81
           LDL +  L+    + + GL +L   +L  N L   + A  F  L  L  L L+ N L+  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-- 96

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSM-SSMTR 139
                                   +P  +   L +L+ L L  N L   +P  +   +T+
Sbjct: 97  -----------------------SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK 132

Query: 140 L-SLNLSYNDLT 150
           L  L L+ N L 
Sbjct: 133 LKELRLNTNQLQ 144

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 37/153 (24%)

Query: 17  MKNFSF--LDLSNNILSGE--------IPSNWEGLEELMVKDLSNNSLSGG----IPASF 62
           M  FS     L  + ++ E        +  + + ++E+    LS N++       +  + 
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLED-DSVKEI---VLSGNTIGTEAARWLSENI 56

Query: 63  CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS 122
            S   L   + S            +                  + + +    KL T+ LS
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRL--------------LLQALLKCPKLHTVRLS 102

Query: 123 SNHLSG----PIPPSMSSMTRL-SLNLSYNDLT 150
            N        P+   +S  T L  L L  N L 
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 40/145 (27%)

Query: 21  SFLDLSNNILS---GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND 77
           S +D SN  L+    ++P   + L       LS NS+S         L  L  L+LS N 
Sbjct: 34  SMVDYSNRNLTHVPKDLPPRTKAL------SLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 78  LSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSMSS 136
           +                           +  ++    Q LE LD+S N L   I      
Sbjct: 88  IR-------------------------SLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CP 119

Query: 137 MTRL-SLNLSYNDLTGPIPLTKQFQ 160
           M  L  L+LS+ND    +P+ K+F 
Sbjct: 120 MASLRHLDLSFNDFDV-LPVCKEFG 143

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 19/140 (13%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 19  NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL------PSLVWLK 72
                 L ++++   + S+   LE+L++     +    G    F  L      P+L WL 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 73  LSKNDLSGELFVALQNCTAFTGFPE------FITEPSGR-IPENIGSLQKLETLDLSSNH 125
           +   +    +                      +T+   R + +++  ++ L+ +++  N+
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 126 LSGPIPPSMSSMTRLSLNLS 145
           LS  +   +     + +++S
Sbjct: 319 LSDEMKKELQKSLPMKIDVS 338

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 9   TIPPSM-SEMKNFSFLDLSNNILSGEIPSNW-EGLEELMVKDLSNNSLSGGIPA-SFCSL 65
            I P     + N  +L +SN  +   +P        + ++ D+ +N     I   SF  L
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 66  PS-LVWLKLSKNDLS---GELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLD 120
               V L L+KN +       F   Q           + E    +P ++         LD
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE----LPNDVFHGASGPVILD 208

Query: 121 LSSNHLSGPIPP-SMSSMTRLSLNLSYNDLTGPIPLTK 157
           +S   +   +P   + ++ +L    S  +L     L K
Sbjct: 209 ISRTRIH-SLPSYGLENLKKLRA-RSTYNLKKLPTLEK 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.23
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	81.43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=6.8e-31  Score=246.78  Aligned_cols=187  Identities=37%  Similarity=0.606  Sum_probs=161.7

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc------------------
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF------------------   62 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------   62 (244)
                      |++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|.++|.+|..+                  
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            46777777777777777888888888888877777778888888888888887776666433                  


Q ss_pred             ----------------------------------------------------CCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227           63 ----------------------------------------------------CSLPSLVWLKLSKNDLSGELFVALQNCT   90 (244)
Q Consensus        63 ----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~   90 (244)
                                                                          +.+++|++|++++|+++|.+|..++.++
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                                3356788899999999999999999999


Q ss_pred             CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCcccc
Q 042227           91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYM  169 (244)
Q Consensus        91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~  169 (244)
                      +|+.|+++.|.++|.+|+.++++++|++||+++|+++|.+|..++.++.|+ +|+++|+++|.+|...++.++...+ |.
T Consensus       657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~~  735 (768)
T 3rgz_A          657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-FL  735 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-GC
T ss_pred             cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH-hc
Confidence            999999999999999999999999999999999999999999999999999 9999999999999999999999888 99


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q 042227          170 GNADLCSPPLTTKCSSDLRN  189 (244)
Q Consensus       170 ~n~~~c~~~~~~~c~~~~~~  189 (244)
                      ||+++||.|.. .|..+...
T Consensus       736 gN~~Lcg~~l~-~C~~~~~~  754 (768)
T 3rgz_A          736 NNPGLCGYPLP-RCDPSNAD  754 (768)
T ss_dssp             SCTEEESTTSC-CCCSCC--
T ss_pred             CCchhcCCCCc-CCCCCccC
Confidence            99999999987 88765433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1e-27  Score=202.80  Aligned_cols=178  Identities=31%  Similarity=0.546  Sum_probs=126.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCC-CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLE-ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++|++++
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            44555555555555555555555555555544555555554 555555555555545555555554 5555555666655


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      ..|..+..+++|+.|+++.|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+ |++++|+++|.+|....+
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l  290 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence            6666777777788888888877766655 77888999999999999988999999999999 999999999999998888


Q ss_pred             ccCCCCccccCCCCCCCCCCCCCC
Q 042227          160 QTFNDPSIYMGNADLCSPPLTTKC  183 (244)
Q Consensus       160 ~~l~~~~~~~~n~~~c~~~~~~~c  183 (244)
                      +.+.... +.+|+.+||.|.. .|
T Consensus       291 ~~L~~l~-l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          291 QRFDVSA-YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGSCGGG-TCSSSEEESTTSS-CC
T ss_pred             cccChHH-hcCCCCccCCCCC-CC
Confidence            8888777 8999999998876 46

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=4.6e-24  Score=174.76  Aligned_cols=154  Identities=21%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        42 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  121 (251)
T 3m19_A           42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS  121 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence            46778877777778888888888888888887777778888888888888888886666777888888888888888887


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      ..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ +++++|++++...
T Consensus       122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            6666778888888888888888866666788888888888888888866666788888888 8888888887643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.6e-24  Score=203.56  Aligned_cols=170  Identities=37%  Similarity=0.551  Sum_probs=133.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|+++|
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            46677777777777777888888888888877777777778888888888888877788888888888888888887776


Q ss_pred             chhhhcc----------------------------------------------------------------------CCC
Q 042227           81 ELFVALQ----------------------------------------------------------------------NCT   90 (244)
Q Consensus        81 ~~~~~l~----------------------------------------------------------------------~l~   90 (244)
                      .+|..+.                                                                      .++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            6665432                                                                      245


Q ss_pred             CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccc
Q 042227           91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIY  168 (244)
Q Consensus        91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~  168 (244)
                      +|+.|+++.|.++|.+|..++.+++|+.|++++|+++|.+|..+++++.|+ ||+++|+++|.+|.. ..+..+...+ .
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-l  711 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID-L  711 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE-C
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE-C
Confidence            677888888999999999999999999999999999999999999999999 999999999999865 3344444333 3


Q ss_pred             cCC
Q 042227          169 MGN  171 (244)
Q Consensus       169 ~~n  171 (244)
                      .+|
T Consensus       712 s~N  714 (768)
T 3rgz_A          712 SNN  714 (768)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.1e-23  Score=169.41  Aligned_cols=176  Identities=19%  Similarity=0.157  Sum_probs=136.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..+..+.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            46777876666678888888888888888885555566788888888888888886556677888888888888888887


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Ccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQ  158 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~  158 (244)
                      ..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ |++++|.+++..+. ...
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            7777788888888888888888866666688888888999988888866666788888888 89988888865443 233


Q ss_pred             cccCCCCccccCCCCCCCC
Q 042227          159 FQTFNDPSIYMGNADLCSP  177 (244)
Q Consensus       159 ~~~l~~~~~~~~n~~~c~~  177 (244)
                      +..+.... +.+|+..|..
T Consensus       204 l~~L~~L~-l~~N~~~c~c  221 (270)
T 2o6q_A          204 LEKLKMLQ-LQENPWDCTC  221 (270)
T ss_dssp             CTTCCEEE-CCSSCBCCSS
T ss_pred             ccCCCEEE-ecCCCeeCCC
Confidence            44555555 6777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.1e-24  Score=184.24  Aligned_cols=152  Identities=31%  Similarity=0.483  Sum_probs=98.0

Q ss_pred             CCCcCCc--cCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCC
Q 042227            2 SRSLLNG--TIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         2 s~N~l~~--~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      ++|.+++  .+|+.+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|++
T Consensus        58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A           58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence            4566666  6666666677777777763 666666666666666777777776666666666666666666666666666


Q ss_pred             CCchhhhccCCCCCceecCCCCCCCCCCCcccCCCC-CCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ-KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      ++.+|..+..+++|+.|+++.|.+++.+|..++.++ +|++|++++|++++.+|..+..+. |+ +++++|.+++.+|
T Consensus       138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            666666666666666666666666666666666665 666666666666655555555554 55 5555555554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=2.5e-23  Score=173.23  Aligned_cols=154  Identities=23%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|. ++...|..+..+++|++|++++|+++
T Consensus        39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A           39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence            45677766655667777777777777777776556677777777777777775 65444666777777777777777777


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      +..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ |++++|.+++..|
T Consensus       119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence            66666677777777777777777655555566677777777777777644444566666676 7777776665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2e-22  Score=164.96  Aligned_cols=171  Identities=22%  Similarity=0.231  Sum_probs=147.2

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus        22 ~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           22 QGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             TTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence            456665 6777665  6899999999999988888899999999999999999987788899999999999999999988


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Cccc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQF  159 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~  159 (244)
                      .+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ |++++|.+++..+. ...+
T Consensus        99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A           99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            888899999999999999999977777789999999999999999966666899999999 99999999976663 3344


Q ss_pred             ccCCCCccccCCCCCCC
Q 042227          160 QTFNDPSIYMGNADLCS  176 (244)
Q Consensus       160 ~~l~~~~~~~~n~~~c~  176 (244)
                      ..+.... +.+|+..|.
T Consensus       179 ~~L~~L~-l~~N~~~c~  194 (251)
T 3m19_A          179 GKLQTIT-LFGNQFDCS  194 (251)
T ss_dssp             TTCCEEE-CCSCCBCTT
T ss_pred             CCCCEEE-eeCCceeCC
Confidence            5555555 677776664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=168.32  Aligned_cols=174  Identities=20%  Similarity=0.201  Sum_probs=146.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      +++|.++ .+|..+.  ..+++|++++|.+++..| ..|..+++|+.|++++|.+++..+..|..+++|++|++++|+++
T Consensus        18 ~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           18 CSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE   94 (220)
T ss_dssp             CCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence            4678886 5787664  457899999999997644 45889999999999999999777779999999999999999999


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ  158 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~  158 (244)
                      +..+..+..+++|+.|+++.|.+++..|..+..+++|++|++++|++++..|..+..+++|+ +++++|++.+.++..+.
T Consensus        95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l  174 (220)
T 2v70_A           95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL  174 (220)
T ss_dssp             CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHH
T ss_pred             ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHH
Confidence            88888999999999999999999998899999999999999999999987799999999999 99999999999886554


Q ss_pred             cccCCCCccccCCCCCCCCC
Q 042227          159 FQTFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       159 ~~~l~~~~~~~~n~~~c~~~  178 (244)
                      ..++....++.+++ .|..|
T Consensus       175 ~~~~~~~~~~~~~~-~C~~P  193 (220)
T 2v70_A          175 GEWLRKKRIVTGNP-RCQKP  193 (220)
T ss_dssp             HHHHHHSCCBCCCC-EEEES
T ss_pred             HHHHHhcCccccCC-ccCCC
Confidence            44443222233443 46544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=2.2e-23  Score=167.68  Aligned_cols=153  Identities=20%  Similarity=0.196  Sum_probs=137.5

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|+|++|+++..
T Consensus        19 ~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           19 RGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             TTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            456665 6777664  7899999999999977777899999999999999999977799999999999999999999977


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTK  157 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~  157 (244)
                      .+..+..+++|+.|+++.|.+++..|..|..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+...+
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence            677789999999999999999998899999999999999999999977777899999999 9999999998776443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.5e-22  Score=169.45  Aligned_cols=172  Identities=24%  Similarity=0.183  Sum_probs=137.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..+..+++|++|++++|.+++..+ . ..+++|+.|++++|.++ .+|..+..+++|++|++++|++++
T Consensus        38 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~  114 (290)
T 1p9a_G           38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS  114 (290)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc
Confidence            56788887777888888999999999998885433 2 67888999999999998 788888889999999999999987


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      ..+..+..+++|+.|+++.|.+++..+..|..+++|+.|++++|+++...+..+..+++|+ |++++|+++...+.....
T Consensus       115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~  194 (290)
T 1p9a_G          115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS  194 (290)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence            7778899999999999999999877777788899999999999999955555678899999 999999998433333333


Q ss_pred             ccCCCCccccCCCCCCC
Q 042227          160 QTFNDPSIYMGNADLCS  176 (244)
Q Consensus       160 ~~l~~~~~~~~n~~~c~  176 (244)
                      ..+.... +.+|+..|.
T Consensus       195 ~~L~~l~-L~~Np~~C~  210 (290)
T 1p9a_G          195 HLLPFAF-LHGNPWLCN  210 (290)
T ss_dssp             CCCSEEE-CCSCCBCCS
T ss_pred             ccCCeEE-eCCCCccCc
Confidence            3444444 577887774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.3e-23  Score=173.49  Aligned_cols=177  Identities=21%  Similarity=0.220  Sum_probs=151.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNI-LSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus        63 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  142 (285)
T 1ozn_A           63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ  142 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence            57889998888999999999999999997 88666888999999999999999999777888999999999999999999


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-Cc
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TK  157 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~  157 (244)
                      +..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..|..+..+++|+ |++++|.+++..+. ..
T Consensus       143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  222 (285)
T 1ozn_A          143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence            77777899999999999999999876666789999999999999999987789999999999 99999999875543 23


Q ss_pred             ccccCCCCccccCCCCCCCCC
Q 042227          158 QFQTFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       158 ~~~~l~~~~~~~~n~~~c~~~  178 (244)
                      .+..+.... +.+|+..|..+
T Consensus       223 ~l~~L~~L~-l~~N~~~c~~~  242 (285)
T 1ozn_A          223 PLRALQYLR-LNDNPWVCDCR  242 (285)
T ss_dssp             TCTTCCEEE-CCSSCEECSGG
T ss_pred             cCcccCEEe-ccCCCccCCCC
Confidence            344555555 67788777543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.2e-22  Score=164.98  Aligned_cols=139  Identities=25%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            4444555555555555442 1 2344455555555555555433334444455555555555555444444444555555


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      .|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ |++++|.+++..|
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            555555554444344444455555555555555433333444445555 5555555544333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=9.5e-23  Score=173.49  Aligned_cols=149  Identities=22%  Similarity=0.295  Sum_probs=99.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++ .+|+.+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|++.+.
T Consensus        89 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A           89 RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE  165 (328)
T ss_dssp             ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred             cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence            456665 66666666777777777777777 66666777777777777777776 6666677777777777777666666


Q ss_pred             hhhhccC---------CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           82 LFVALQN---------CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        82 ~~~~l~~---------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      +|..+..         +++|+.|+++.|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|+ |++++|.+.+
T Consensus       166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR  243 (328)
T ss_dssp             CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC
T ss_pred             cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh
Confidence            6655543         666666666666666 56666666666666666666666 3555566666666 6666666666


Q ss_pred             CCCC
Q 042227          152 PIPL  155 (244)
Q Consensus       152 ~~p~  155 (244)
                      .+|.
T Consensus       244 ~~p~  247 (328)
T 4fcg_A          244 NYPP  247 (328)
T ss_dssp             BCCC
T ss_pred             hhHH
Confidence            6554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.3e-22  Score=172.61  Aligned_cols=170  Identities=21%  Similarity=0.271  Sum_probs=134.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCC---------CCCCcEE
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCS---------LPSLVWL   71 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~---------l~~L~~L   71 (244)
                      |++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..         +++|++|
T Consensus       111 L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L  188 (328)
T 4fcg_A          111 IDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL  188 (328)
T ss_dssp             EESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE
T ss_pred             CCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE
Confidence            4578888 88888888999999999999988 77888888899999999988777788876654         8888888


Q ss_pred             EccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           72 KLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        72 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      ++++|+++ .+|..+..+++|+.|+++.|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|+ |++++|.+.
T Consensus       189 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             EEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             ECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence            88888888 778888888888888888888884 566688888888888888888888888888888888 888888888


Q ss_pred             CCCCCC-cccccCCCCccccCCCCCC
Q 042227          151 GPIPLT-KQFQTFNDPSIYMGNADLC  175 (244)
Q Consensus       151 ~~~p~~-~~~~~l~~~~~~~~n~~~c  175 (244)
                      +.+|.. ..+..+.... +.+|+..-
T Consensus       267 ~~~p~~~~~l~~L~~L~-L~~n~~~~  291 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLD-LRGCVNLS  291 (328)
T ss_dssp             CBCCTTGGGCTTCCEEE-CTTCTTCC
T ss_pred             hhcchhhhcCCCCCEEe-CCCCCchh
Confidence            887754 3344444444 44554433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.9e-21  Score=161.01  Aligned_cols=156  Identities=22%  Similarity=0.224  Sum_probs=141.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++ + +.+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        70 l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A           70 LGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             CTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence            57788876 3 478899999999999999997777788999999999999999997777778999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ  158 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~  158 (244)
                      ..+..+..+++|+.|+++.|.+++..+..++.+++|++|++++|++++..+..+..+++|+ +++++|++.|.+|....
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~  226 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  226 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHH
Confidence            8888889999999999999999987777789999999999999999987777889999999 99999999999886543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.8e-21  Score=160.98  Aligned_cols=156  Identities=22%  Similarity=0.217  Sum_probs=139.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.++...+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence            57889986555667899999999999999997767788999999999999999997777889999999999999999997


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      ..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.++..
T Consensus       148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            7777799999999999999999987777799999999999999999966666789999999 999999999988743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=1.4e-21  Score=158.10  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=134.1

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++++++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|++++|++++.
T Consensus        27 ~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           27 RSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             TTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            455554 6776654  8999999999999988889999999999999999999855557789999999999999999988


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      .+..+..+++|+.|+++.|.++ .+|..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.++.
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            7788999999999999999999 7888899999999999999999966667799999999 99999999998874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=6.4e-22  Score=163.95  Aligned_cols=129  Identities=22%  Similarity=0.217  Sum_probs=85.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|++++
T Consensus        35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence            45666665555566667777777777777765555566667777777777777765555666667777777777777665


Q ss_pred             chhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGP  129 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~  129 (244)
                      ..+..+..+++|+.|+++.|.+++ .+|..+..+++|++|++++|++++.
T Consensus       115 ~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            555566666777777777776665 2466666666777777766666643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=3.5e-22  Score=189.37  Aligned_cols=78  Identities=27%  Similarity=0.315  Sum_probs=40.4

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      ++|.+++..|..+.++++|++|++++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus       298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            344555444555555555555555555555444555555555555555555555433444555555555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1.6e-21  Score=172.05  Aligned_cols=133  Identities=22%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCC
Q 042227           44 LMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS  123 (244)
Q Consensus        44 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~  123 (244)
                      |+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|+++.|.+++..|..++.+++|++|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            33333333333333344455555555555555555555555555555555555555555554455555555555555555


Q ss_pred             CCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCCC
Q 042227          124 NHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCSP  177 (244)
Q Consensus       124 N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~~  177 (244)
                      |++++..|..+..+++|+ |++++|++++..+.. ..+..+.... +.+|+..|..
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~  411 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW-LHTNPWDCSC  411 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCBCCCT
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE-ccCCCcccCC
Confidence            555544455555555555 555555555433322 2233333333 4455544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=9.1e-22  Score=179.65  Aligned_cols=175  Identities=21%  Similarity=0.188  Sum_probs=126.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.+++ +|..+..+++|++|++++|++++..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence            45666653 55677778888888888888776655 56777788888888888877767777777888888888888777


Q ss_pred             C-chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-
Q 042227           80 G-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-  156 (244)
Q Consensus        80 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-  156 (244)
                      + .+|..+..+++|+.|+++.|.+++..|..++.+++|++|++++|++++..|..+..+++|+ +++++|+++ .+|.. 
T Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred             CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence            6 3677777788888888888887777777777788888888888888766677777777887 888888777 34433 


Q ss_pred             cccc-cCCCCccccCCCCCCCCC
Q 042227          157 KQFQ-TFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       157 ~~~~-~l~~~~~~~~n~~~c~~~  178 (244)
                      ..+. .+.... +.+|+..|..+
T Consensus       541 ~~l~~~L~~l~-l~~N~~~c~c~  562 (606)
T 3vq2_A          541 QHFPKSLAFFN-LTNNSVACICE  562 (606)
T ss_dssp             GGSCTTCCEEE-CCSCCCCCSST
T ss_pred             hhhcccCcEEE-ccCCCcccCCc
Confidence            2222 244344 56777776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=8.9e-22  Score=179.74  Aligned_cols=162  Identities=19%  Similarity=0.193  Sum_probs=142.9

Q ss_pred             CCCCcCCccCC-cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc-cCCcccCCCCCCcEEEccCCCC
Q 042227            1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG-GIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      |++|++++..| ..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|++
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            56788888777 678899999999999999998888889999999999999999986 4788899999999999999999


Q ss_pred             CCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCC-ceE-EEcccCCCcCCCCCC
Q 042227           79 SGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT-RLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~-~L~-L~ls~N~l~~~~p~~  156 (244)
                      ++..|..+..+++|+.|+++.|.+++..|..++.+++|++|++++|+++ .+|..+..++ +|+ +++++|++.|.++..
T Consensus       486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9888889999999999999999999888899999999999999999999 7888888887 599 999999999988876


Q ss_pred             cccccCC
Q 042227          157 KQFQTFN  163 (244)
Q Consensus       157 ~~~~~l~  163 (244)
                      +..+++.
T Consensus       565 ~~~~~l~  571 (606)
T 3vq2_A          565 KFLQWVK  571 (606)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHHH
Confidence            5555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=9e-23  Score=187.95  Aligned_cols=149  Identities=21%  Similarity=0.314  Sum_probs=105.3

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCccccc-----------------CCcccc--CCCCCCEEEccCCcCCccCCcccC
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGE-----------------IPSNWE--GLEELMVKDLSNNSLSGGIPASFC   63 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~   63 (244)
                      +|+++| +|+.++++++|++|++++|.+++.                 +|+.+.  ++++|++|++++|.+.+.+|..++
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            456666 677777777777777777777754                 666666  777777777777777767777777


Q ss_pred             CCCCCcEEEccCCC-CCC-chhhhccCC------CCCceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCccc
Q 042227           64 SLPSLVWLKLSKND-LSG-ELFVALQNC------TAFTGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPPS  133 (244)
Q Consensus        64 ~l~~L~~L~Ls~N~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~  133 (244)
                      ++++|++|++++|+ +++ .+|..++++      ++|+.|+++.|.++ .+|.  .++++++|++|++++|+++|.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            77777777777776 666 667666665      67777777777777 6666  67777777777777777776667 6


Q ss_pred             cCCCCceE-EEcccCCCcCCCCC
Q 042227          134 MSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       134 l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +..+++|+ |++++|.++ .+|.
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~  370 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPA  370 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCT
T ss_pred             hCCCCCCCEEECCCCccc-cccH
Confidence            77777777 777777776 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.9e-21  Score=170.85  Aligned_cols=175  Identities=17%  Similarity=0.125  Sum_probs=105.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++.
T Consensus        82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            45667766666667777777777777777776556666667777777777777664444556666666666666666653


Q ss_pred             chhhh-------------------------ccCCCCCce----------------------ecCCCCCCCCCCCcccCCC
Q 042227           81 ELFVA-------------------------LQNCTAFTG----------------------FPEFITEPSGRIPENIGSL  113 (244)
Q Consensus        81 ~~~~~-------------------------l~~l~~L~~----------------------L~l~~n~l~~~~p~~~~~l  113 (244)
                      ..+..                         +..+++|+.                      |++++|.+++..|..|.++
T Consensus       162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCc
Confidence            33222                         333333333                      3334444444445556666


Q ss_pred             CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCC
Q 042227          114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~  176 (244)
                      ++|+.|++++|++++..+..+..+++|+ |++++|.+++..+.. ..+..+.... +.+|+..|.
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~Np~~Cd  305 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH-LHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE-CCSSCEECS
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE-ccCCCcCCC
Confidence            6666666666666655566667777777 777777776544332 2234444444 567776664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=9.7e-21  Score=150.53  Aligned_cols=153  Identities=21%  Similarity=0.200  Sum_probs=132.1

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL   82 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~   82 (244)
                      ++.++ .+|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus        16 ~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           16 SQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             SSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            44554 456544  468999999999999766777899999999999999999666667899999999999999999777


Q ss_pred             hhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcc
Q 042227           83 FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQ  158 (244)
Q Consensus        83 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~  158 (244)
                      +..+..+++|+.|+++.|.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+|....
T Consensus        93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~  169 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  169 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHH
T ss_pred             HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHH
Confidence            77789999999999999999987777789999999999999999966666789999999 99999999998885433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=9e-22  Score=165.31  Aligned_cols=139  Identities=25%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKNDLSGELFVALQNCT   90 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~   90 (244)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..++
T Consensus        72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  150 (306)
T 2z66_A           72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  150 (306)
T ss_dssp             HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred             cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence            33334455555555555544 334444445555555555554442222 2444444555555555544444444444444


Q ss_pred             CCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           91 AFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        91 ~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      +|+.|+++.|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+ |++++|.+++
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            45555554444443 2344444444444555544444433344444444444 4444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=2.8e-21  Score=162.33  Aligned_cols=174  Identities=20%  Similarity=0.200  Sum_probs=123.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            4567665 456667778888888888888775443 46777788888888888877666777777788888888888776


Q ss_pred             C-chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-
Q 042227           80 G-ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-  156 (244)
Q Consensus        80 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-  156 (244)
                      + ..|..+..+++|+.|+++.|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|.+++..|.. 
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            5 5677777788888888888887776677777788888888888888765555677777887 888888877766543 


Q ss_pred             ccc-ccCCCCccccCCCCCCC
Q 042227          157 KQF-QTFNDPSIYMGNADLCS  176 (244)
Q Consensus       157 ~~~-~~l~~~~~~~~n~~~c~  176 (244)
                      ..+ ..+.... +.+|+..|.
T Consensus       244 ~~~~~~L~~L~-L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLN-LTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEE-CTTCCEECS
T ss_pred             HhhhccCCEEE-ccCCCeecc
Confidence            222 2343334 556665553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=9.8e-22  Score=173.45  Aligned_cols=142  Identities=19%  Similarity=0.148  Sum_probs=132.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecC
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE   97 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l   97 (244)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            68999999999999888999999999999999999999888889999999999999999999888999999999999999


Q ss_pred             CCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           98 FITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        98 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      ++|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|+++|.+|....+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            99999988899999999999999999999976666789999999 999999999999976544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.4e-21  Score=152.02  Aligned_cols=149  Identities=19%  Similarity=0.147  Sum_probs=132.7

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        35 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  114 (208)
T 2o6s_A           35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS  114 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence            57899987767778999999999999999997666678999999999999999996666678999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      ..+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|.+.+       .++.|+ ++++.|.++|.+|..
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence            777789999999999999999997777778999999999999998874       356788 999999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=166.81  Aligned_cols=173  Identities=20%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc------------------
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF------------------   62 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------------------   62 (244)
                      |++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.++...+..|                  
T Consensus        95 Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A           95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             CCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             CCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc
Confidence            45666665555666666666666666666664444456666666666666666653333334                  


Q ss_pred             -------CCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227           63 -------CSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS  135 (244)
Q Consensus        63 -------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~  135 (244)
                             ..+++|++|++++|+++ .+| .+..+++|+.|+++.|.+++..|..|.++++|++|++++|++++..+..|.
T Consensus       175 ~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             EECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred             eeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence                   44444444444444444 222 245555666666666666666666677777777777777777766666777


Q ss_pred             CCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCC
Q 042227          136 SMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       136 ~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~  176 (244)
                      .+++|+ |++++|++++..+.. ..+..+.... +.+|+..|.
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~Np~~Cd  294 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH-LHHNPWNCN  294 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE-CCSSCEECS
T ss_pred             CCCCCCEEECCCCCCCccChhHhccccCCCEEE-cCCCCccCC
Confidence            777777 777777777544432 2344444444 567776664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=5.7e-22  Score=182.59  Aligned_cols=152  Identities=21%  Similarity=0.363  Sum_probs=142.4

Q ss_pred             CCCCcCCcc-----------------CCcCCC--CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCC
Q 042227            1 LSRSLLNGT-----------------IPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIP   59 (244)
Q Consensus         1 Ls~N~l~~~-----------------ip~~l~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p   59 (244)
                      |++|++++.                 +|+.++  ++++|++|++++|.+.+.+|+.+.++++|++|++++|+ +++ .+|
T Consensus       213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp  292 (636)
T 4eco_A          213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK  292 (636)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred             CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence            467889886                 999999  99999999999999999999999999999999999998 998 899


Q ss_pred             cccCCC------CCCcEEEccCCCCCCchhh--hccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227           60 ASFCSL------PSLVWLKLSKNDLSGELFV--ALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP  131 (244)
Q Consensus        60 ~~~~~l------~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  131 (244)
                      ..++.+      ++|++|++++|+++ .+|.  .+.++++|+.|+++.|.++|.+| .++.+++|++|++++|+++ .+|
T Consensus       293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp  369 (636)
T 4eco_A          293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP  369 (636)
T ss_dssp             HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred             HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc
Confidence            888876      99999999999999 8888  99999999999999999999999 8999999999999999999 899


Q ss_pred             cccCCCCc-eE-EEcccCCCcCCCCCC
Q 042227          132 PSMSSMTR-LS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       132 ~~l~~l~~-L~-L~ls~N~l~~~~p~~  156 (244)
                      ..+..+++ |+ |++++|.++ .+|..
T Consensus       370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          370 ANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             TTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             HhhhhhcccCcEEEccCCcCc-ccchh
Confidence            99999999 99 999999999 67654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=1.6e-21  Score=153.50  Aligned_cols=155  Identities=25%  Similarity=0.264  Sum_probs=125.2

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      +++++++|.++ .+|..+..  +++.|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|+.|+++.
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68899999987 67776543  889999999999855443 488899999999999999988888899999999999999


Q ss_pred             CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccCCCCCCCCC
Q 042227          100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~~~c~~~  178 (244)
                      |.+++..+..|.++++|++|++++|++++..|..+..+++|+ +++++|++.|.++..+...++.... +.++...|+.|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~-~~~~~~~C~~P  166 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS-LNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC-CSGGGCBBCSS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC-CCCCCCCCCCC
Confidence            999988888899999999999999999988899999999999 9999999999887654433333222 34444556655


Q ss_pred             C
Q 042227          179 L  179 (244)
Q Consensus       179 ~  179 (244)
                      .
T Consensus       167 ~  167 (192)
T 1w8a_A          167 S  167 (192)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.1e-20  Score=156.32  Aligned_cols=150  Identities=24%  Similarity=0.151  Sum_probs=135.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..+  ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++
T Consensus        62 L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             CCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence            57888875433  278999999999999999 788889999999999999999996667889999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      ..+..+..+++|+.|+++.|+++...+..+..+++|++|++++|+++ .+|..+..+..|+ +++++|++.+.+.
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            87888999999999999999999766667889999999999999999 7899888899999 9999999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=168.08  Aligned_cols=154  Identities=19%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  118 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI  118 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence            57888888778888899999999999999987778888899999999999999885555668888999999999999988


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      ..+..+..+++|+.|+++.|.+++..+..|.++++|++|++++|++++..+..+..+++|+ |++++|.+.+..+
T Consensus       119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            8888888899999999999988887778888888899999998888865556678888888 8888888776444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=4.2e-21  Score=162.00  Aligned_cols=154  Identities=25%  Similarity=0.263  Sum_probs=125.3

Q ss_pred             CCCCcCCccCCcCC--CCCCCccEEEccCCcccccCCccccCC-----CCCCEEEccCCcCCccCCcccCCCCCCcEEEc
Q 042227            1 LSRSLLNGTIPPSM--SEMKNFSFLDLSNNILSGEIPSNWEGL-----EELMVKDLSNNSLSGGIPASFCSLPSLVWLKL   73 (244)
Q Consensus         1 Ls~N~l~~~ip~~l--~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L   73 (244)
                      |++|++++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+++..|..++.+++|++|++
T Consensus       102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred             ccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence            46788999999876  8899999999999999966 7777776     89999999999999777789999999999999


Q ss_pred             cCCCCCCc--hhhhc--cCCCCCceecCCCCCCCC--CCC-cccCCCCCCCeecCCCCCCCCCCc-cccCCCCceE-EEc
Q 042227           74 SKNDLSGE--LFVAL--QNCTAFTGFPEFITEPSG--RIP-ENIGSLQKLETLDLSSNHLSGPIP-PSMSSMTRLS-LNL  144 (244)
Q Consensus        74 s~N~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~-L~l  144 (244)
                      ++|++.+.  .+..+  ..+++|+.|+++.|.+++  .++ ..+..+++|++|++++|++++..| ..+..+++|+ |++
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence            99998765  34454  888999999999998873  222 334577889999999999987664 4566678888 999


Q ss_pred             ccCCCcCCCCCC
Q 042227          145 SYNDLTGPIPLT  156 (244)
Q Consensus       145 s~N~l~~~~p~~  156 (244)
                      ++|.++ .+|..
T Consensus       261 s~N~l~-~ip~~  271 (312)
T 1wwl_A          261 SFTGLK-QVPKG  271 (312)
T ss_dssp             TTSCCS-SCCSS
T ss_pred             CCCccC-hhhhh
Confidence            999888 56654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.1e-21  Score=185.57  Aligned_cols=164  Identities=18%  Similarity=0.265  Sum_probs=126.8

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccc-----------------cCCcccc--CCCCCCEEEccCCcCCccCCcccC
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSG-----------------EIPSNWE--GLEELMVKDLSNNSLSGGIPASFC   63 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~   63 (244)
                      .|++++ +|..++++++|++|++++|.+++                 .+|+.+.  ++++|++|++++|.+.+.+|..++
T Consensus       434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            366766 78888888888888888888886                 2777766  888888888888888878888888


Q ss_pred             CCCCCcEEEccCCC-CCC-chhhhccCCC-------CCceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCcc
Q 042227           64 SLPSLVWLKLSKND-LSG-ELFVALQNCT-------AFTGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPP  132 (244)
Q Consensus        64 ~l~~L~~L~Ls~N~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~  132 (244)
                      ++++|++|++++|+ +++ .+|..+..++       +|+.|+++.|.++ .+|.  .++++++|++|++++|+++ .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            88888888888887 877 7777666655       8888888888888 7787  7888888888888888888 777 


Q ss_pred             ccCCCCceE-EEcccCCCcCCCCCC-ccccc-CCCCccccCCC
Q 042227          133 SMSSMTRLS-LNLSYNDLTGPIPLT-KQFQT-FNDPSIYMGNA  172 (244)
Q Consensus       133 ~l~~l~~L~-L~ls~N~l~~~~p~~-~~~~~-l~~~~~~~~n~  172 (244)
                      .+..+++|+ |++++|.++ .+|.. ..+.. +.... +.+|.
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~-Ls~N~  630 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG-FSHNK  630 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE-CCSSC
T ss_pred             hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE-CcCCC
Confidence            788888888 888888888 56543 33333 44333 34443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=8e-21  Score=163.52  Aligned_cols=145  Identities=26%  Similarity=0.239  Sum_probs=76.3

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      +|.++ .+|..+.  +.++.|+|++|++++..+..+. ++++|+.|++++|+|++..+..|..+++|++|+|++|++++.
T Consensus        27 ~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~  103 (361)
T 2xot_A           27 KQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL  103 (361)
T ss_dssp             SSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence            34443 3444332  2355556666555544444444 555555666655555544444555555556666655555544


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCcccc---CCCCceE-EEcccCCCc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSM---SSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l---~~l~~L~-L~ls~N~l~  150 (244)
                      .+..+..+++|+.|+++.|.+++..|..|..+++|++|++++|++++..+..+   ..+++|+ |++++|.++
T Consensus       104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            44455555555555555555555555555555555555555555553222222   3455555 555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=2.8e-21  Score=163.12  Aligned_cols=153  Identities=19%  Similarity=0.206  Sum_probs=117.2

Q ss_pred             CCCCcC-CccCCcCCC-------CCCCccEEEccCCcccccCCccc--cCCCCCCEEEccCCcCCccCCcccCCC-----
Q 042227            1 LSRSLL-NGTIPPSMS-------EMKNFSFLDLSNNILSGEIPSNW--EGLEELMVKDLSNNSLSGGIPASFCSL-----   65 (244)
Q Consensus         1 Ls~N~l-~~~ip~~l~-------~l~~L~~L~l~~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----   65 (244)
                      |++|.+ .+.+|..+.       ++++|++|++++|.+++..|..+  ..+++|++|++++|.+++. |..+..+     
T Consensus        70 L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~  148 (312)
T 1wwl_A           70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLK  148 (312)
T ss_dssp             CCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCC
T ss_pred             cccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhc
Confidence            456677 355666554       68888888888888888778765  7888888888888888855 7777666     


Q ss_pred             CCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCC--CCccc--CCCCCCCeecCCCCCCCC--CCc-cccCCCC
Q 042227           66 PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGR--IPENI--GSLQKLETLDLSSNHLSG--PIP-PSMSSMT  138 (244)
Q Consensus        66 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~ls~N~l~~--~~p-~~l~~l~  138 (244)
                      ++|++|++++|++++..+..+..+++|+.|+++.|.+.+.  +|..+  +.+++|++|++++|++++  .++ ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            8888888888888877778888888888888888887764  23334  788888888888888883  112 2345678


Q ss_pred             ceE-EEcccCCCcCCCC
Q 042227          139 RLS-LNLSYNDLTGPIP  154 (244)
Q Consensus       139 ~L~-L~ls~N~l~~~~p  154 (244)
                      +|+ |++++|.+++.+|
T Consensus       229 ~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CCSEEECTTSCCCSSCC
T ss_pred             CCCEEECCCCcCCcccc
Confidence            888 8888888887664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=8.8e-21  Score=173.14  Aligned_cols=153  Identities=20%  Similarity=0.125  Sum_probs=87.8

Q ss_pred             CCCcCCccC--CcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCCC
Q 042227            2 SRSLLNGTI--PPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         2 s~N~l~~~i--p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l   78 (244)
                      ++|.+++..  |..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|. .+..+++|++|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            455555443  55566666666666666666655555666666666666666666544332 355566666666666666


Q ss_pred             CCchhhhccCCCCCceecCCCCCCCCC---CCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           79 SGELFVALQNCTAFTGFPEFITEPSGR---IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        79 ~~~~~~~l~~l~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      ++..|..+..+++|+.|+++.|.+++.   .+..+..+++|++|++++|++++..|..+..+++|+ +++++|++++..|
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence            555555566666666666666655541   223455556666666666666555555555566666 6666665555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=2.5e-20  Score=154.31  Aligned_cols=176  Identities=20%  Similarity=0.151  Sum_probs=143.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        59 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            57899987777789999999999999999998777889999999999999999996666689999999999999999987


Q ss_pred             c-hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCC----eecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           81 E-LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE----TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        81 ~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      . +|..+..+++|+.|+++.|.+++..+..+..+++|+    +|++++|++++. +.......+|+ +++++|.+++..+
T Consensus       139 ~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred             ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCH
Confidence            4 689999999999999999999987777776666666    888999999844 44344445788 9999999886554


Q ss_pred             CC-cccccCCCCccccCCCCCCCCC
Q 042227          155 LT-KQFQTFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       155 ~~-~~~~~l~~~~~~~~n~~~c~~~  178 (244)
                      .. ..+..+.... +.+|+..|..+
T Consensus       218 ~~~~~l~~L~~L~-l~~N~~~c~c~  241 (276)
T 2z62_A          218 GIFDRLTSLQKIW-LHTNPWDCSCP  241 (276)
T ss_dssp             TTTTTCCSCCEEE-CCSSCBCCCTT
T ss_pred             hHhcccccccEEE-ccCCcccccCC
Confidence            33 3455555555 67788777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=167.91  Aligned_cols=157  Identities=25%  Similarity=0.284  Sum_probs=96.1

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCCchhh-hccCCCC
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSGELFV-ALQNCTA   91 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~   91 (244)
                      ..+++|++|++++|++++..|..+.++++|+.|++++|.+++  .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            455666666666666666566666666666666666666664  3445566666666666666666654443 3566666


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC--cccccCCCCccc
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT--KQFQTFNDPSIY  168 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~--~~~~~l~~~~~~  168 (244)
                      |+.|+++.|.+++.+|..+.  ++|++|++++|+++ .+|..+..+++|+ +++++|+++. +|..  ..+..+.... +
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~-l  475 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW-L  475 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE-C
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEE-C
Confidence            66666666666655555443  56677777777776 5666666677777 7777777763 3332  2333344344 4


Q ss_pred             cCCCCCCC
Q 042227          169 MGNADLCS  176 (244)
Q Consensus       169 ~~n~~~c~  176 (244)
                      .+|+..|.
T Consensus       476 ~~N~~~c~  483 (520)
T 2z7x_B          476 HTNPWDCS  483 (520)
T ss_dssp             CSSCBCCC
T ss_pred             cCCCCccc
Confidence            56665553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=6.3e-21  Score=171.17  Aligned_cols=154  Identities=24%  Similarity=0.290  Sum_probs=138.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKND   77 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~   77 (244)
                      |++|++++.+|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|+
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            57899999999999999999999999999996  5567899999999999999999975665 48889999999999999


Q ss_pred             CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccc-cCCCCceE-EEcccCCCcCCCCC
Q 042227           78 LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS-MSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        78 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +++..|..+.  ++|+.|+++.|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+ +++++|+++|.++.
T Consensus       411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9988877665  79999999999999 78888889999999999999999 56765 89999999 99999999998875


Q ss_pred             Ccc
Q 042227          156 TKQ  158 (244)
Q Consensus       156 ~~~  158 (244)
                      .+.
T Consensus       487 ~~~  489 (520)
T 2z7x_B          487 IDY  489 (520)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=168.21  Aligned_cols=174  Identities=18%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             CcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchh
Q 042227            4 SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF   83 (244)
Q Consensus         4 N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~   83 (244)
                      |.+++..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus       186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  265 (477)
T 2id5_A          186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG  265 (477)
T ss_dssp             CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred             CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence            33333333344444444444444444443444333334456666666677763333567788888888888888887777


Q ss_pred             hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccC
Q 042227           84 VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTF  162 (244)
Q Consensus        84 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l  162 (244)
                      ..+..+++|+.|+++.|.+++..|..+..+++|+.|++++|++++..+..|..+++|+ +++++|++.+.++..+.+.+.
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~  345 (477)
T 2id5_A          266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR  345 (477)
T ss_dssp             TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTT
T ss_pred             hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhh
Confidence            7788888888888888888887788888888888888888888866666778888888 888888888877655544444


Q ss_pred             CCCccccCCCCCCCCC
Q 042227          163 NDPSIYMGNADLCSPP  178 (244)
Q Consensus       163 ~~~~~~~~n~~~c~~~  178 (244)
                      .... +.++...|..|
T Consensus       346 ~~~~-~~~~~~~C~~p  360 (477)
T 2id5_A          346 WRLN-FNRQQPTCATP  360 (477)
T ss_dssp             TSSC-CTTCCCBEEES
T ss_pred             hccc-cCccCceeCCc
Confidence            3333 55566666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=2.1e-20  Score=169.58  Aligned_cols=133  Identities=21%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCCchhh-hccCCCC
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSGELFV-ALQNCTA   91 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~   91 (244)
                      ..+++|++|++++|++++..|..+.++++|+.|++++|.+++  .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            344555555555555555455555555555555555555553  1223455555555555555555542332 3444555


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      |+.|+++.|.+++.+|..+.  ++|++|++++|+++ .+|..+..+++|+ +++++|+++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence            55555555555444433332  34555555555555 4444444555555 555555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=1.2e-20  Score=171.18  Aligned_cols=181  Identities=24%  Similarity=0.299  Sum_probs=147.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCc-ccCCCCCCcEEEccCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPA-SFCSLPSLVWLKLSKND   77 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~   77 (244)
                      |++|++++.+|..+.++++|++|++++|++++  .+|..+.++++|+.|++++|.+++.+|. .+..+++|++|++++|+
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            57899999999999999999999999999996  2356789999999999999999974664 58899999999999999


Q ss_pred             CCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccc-cCCCCceE-EEcccCCCcCCCCC
Q 042227           78 LSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPS-MSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        78 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +++..|..+.  ++|+.|+++.|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+ +++++|++.|.++.
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            9987776654  79999999999998 68887889999999999999999 67766 89999999 99999999999886


Q ss_pred             Ccccc-cCCCCccccCCCCCCCCCCCCCCCC
Q 042227          156 TKQFQ-TFNDPSIYMGNADLCSPPLTTKCSS  185 (244)
Q Consensus       156 ~~~~~-~l~~~~~~~~n~~~c~~~~~~~c~~  185 (244)
                      .+.++ +.........+...|+.+....|..
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          516 IRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             HHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             HHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            65533 2211110112223346666667765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2.7e-20  Score=160.19  Aligned_cols=155  Identities=26%  Similarity=0.147  Sum_probs=136.6

Q ss_pred             CCCCcCCccCCcCCC-CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMS-EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|+|++..+..+. ++++|++|++++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus        46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            689999988888887 9999999999999999777788999999999999999999766778999999999999999999


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCccc---CCCCCCCeecCCCCCCCCCCccccCCCCce--E-EEcccCCCcCCC
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENI---GSLQKLETLDLSSNHLSGPIPPSMSSMTRL--S-LNLSYNDLTGPI  153 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L--~-L~ls~N~l~~~~  153 (244)
                      +..+..+..+++|+.|+++.|.+++..+..+   ..+++|+.|++++|++++..+..+..++.+  + +++++|++.+.+
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            8889999999999999999999996544445   679999999999999996555678888874  7 999999999887


Q ss_pred             CC
Q 042227          154 PL  155 (244)
Q Consensus       154 p~  155 (244)
                      ..
T Consensus       206 ~l  207 (361)
T 2xot_A          206 KL  207 (361)
T ss_dssp             HH
T ss_pred             Cc
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=7.6e-21  Score=172.05  Aligned_cols=146  Identities=21%  Similarity=0.210  Sum_probs=83.9

Q ss_pred             CCCCCCccEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC-CchhhhccCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS-GELFVALQNCTA   91 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~   91 (244)
                      +..+++|++|++++|.+++..| ..+.++++|+.|++++|.+++..|..+..+++|++|++++|+++ +.+|..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            4555555555555555554333 34555555666666666555555555555666666666666554 345555566666


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      |+.|+++.|.+++..|..+..+++|++|++++|++++..+..+..+++|+ +++++|+++|.+|....+
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            66666666666555555566666666666666666654445555566666 666666666665554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=9.1e-21  Score=179.39  Aligned_cols=151  Identities=23%  Similarity=0.302  Sum_probs=138.5

Q ss_pred             CCCCcCCc-----------------cCCcCCC--CCCCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCc-cCC
Q 042227            1 LSRSLLNG-----------------TIPPSMS--EMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSG-GIP   59 (244)
Q Consensus         1 Ls~N~l~~-----------------~ip~~l~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p   59 (244)
                      |++|+|++                 .+|+.++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|
T Consensus       455 Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP  534 (876)
T 4ecn_A          455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK  534 (876)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH
T ss_pred             CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch
Confidence            46788887                 4999988  99999999999999999999999999999999999998 987 788


Q ss_pred             cccCCC-------CCCcEEEccCCCCCCchhh--hccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCC
Q 042227           60 ASFCSL-------PSLVWLKLSKNDLSGELFV--ALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPI  130 (244)
Q Consensus        60 ~~~~~l-------~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  130 (244)
                      ..++.+       ++|+.|++++|+++ .+|.  .+.++++|+.|+++.|.++ .+| .++.+++|+.|++++|+++ .+
T Consensus       535 ~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~l  610 (876)
T 4ecn_A          535 ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EI  610 (876)
T ss_dssp             HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CC
T ss_pred             HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cc
Confidence            766655       49999999999999 8888  9999999999999999999 888 8999999999999999999 89


Q ss_pred             ccccCCCCc-eE-EEcccCCCcCCCCCC
Q 042227          131 PPSMSSMTR-LS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       131 p~~l~~l~~-L~-L~ls~N~l~~~~p~~  156 (244)
                      |..+..+++ |+ |++++|.++ .+|..
T Consensus       611 p~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          611 PEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             CTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             hHHHhhccccCCEEECcCCCCC-cCchh
Confidence            999999999 99 999999999 66643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=6.8e-20  Score=167.21  Aligned_cols=145  Identities=25%  Similarity=0.254  Sum_probs=121.6

Q ss_pred             cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227            9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN   88 (244)
Q Consensus         9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~   88 (244)
                      .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            5666553  47899999999999766778999999999999999998666778899999999999999998777778899


Q ss_pred             CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC-CCccccCCCCceE-EEcccCCCcCCCCC
Q 042227           89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG-PIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +++|++|+++.|.+++..+..|+++++|++|++++|++++ .+|..+..++.|+ |++++|.+++..|.
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9999999999999987766778999999999999999874 4577888889999 99999998876553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=4.6e-20  Score=145.59  Aligned_cols=131  Identities=18%  Similarity=0.310  Sum_probs=79.9

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34556666666666666 444 4566666666666666554  2235556666666666666666555666666666666


Q ss_pred             ecCCCCCCCCCCCcccCCCCCCCeecCCCCC-CCCCCccccCCCCceE-EEcccCCCcC
Q 042227           95 FPEFITEPSGRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      |+++.|.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+ +++++|.+++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            6666666665555566666666666666665 44 444 456666666 6666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=6.6e-20  Score=169.55  Aligned_cols=177  Identities=21%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             CCCCcCCccCC-cCCCCCCCccEEEccCCccccc--------------------------CCccccCCCCCCEEEccCCc
Q 042227            1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGE--------------------------IPSNWEGLEELMVKDLSNNS   53 (244)
Q Consensus         1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~--------------------------~p~~~~~l~~L~~L~L~~n~   53 (244)
                      |++|.+++.+| ..+.++++|++|++++|++++.                          .|..+.++++|+.|++++|.
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~  491 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN  491 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence            35666665554 4555666666666666655543                          34455555566666666666


Q ss_pred             CCccCCcccCCCCCCcEEEccCCCCCCchh--------hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCC
Q 042227           54 LSGGIPASFCSLPSLVWLKLSKNDLSGELF--------VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH  125 (244)
Q Consensus        54 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~  125 (244)
                      +++..+..+..+++|++|++++|++++..+        ..+..+++|+.|+++.|.++...+..|.++++|+.|++++|+
T Consensus       492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence            654444555566666666666666553211        124556666666666666663333346667777777777777


Q ss_pred             CCCCCccccCCCCceE-EEcccCCCcCCCCCCc--ccccCCCCccccCCCCCCCCC
Q 042227          126 LSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTK--QFQTFNDPSIYMGNADLCSPP  178 (244)
Q Consensus       126 l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~--~~~~l~~~~~~~~n~~~c~~~  178 (244)
                      +++..+..|..+++|+ +++++|.+++..|...  .+..+.... +.+|+..|..+
T Consensus       572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~-l~~N~~~c~c~  626 (680)
T 1ziw_A          572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD-MRFNPFDCTCE  626 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE-CTTCCCCBCCC
T ss_pred             CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE-ccCCCcccCCc
Confidence            7744444566667777 7777777766544321  234444445 67788887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=7.7e-20  Score=167.18  Aligned_cols=103  Identities=18%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus        82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence            45666666666666666777777777776666555566666666666666666663333445666666666666666666


Q ss_pred             chhhhccCCCCCceecCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPS  103 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~  103 (244)
                      ..|..+..+++|+.|+++.|.++
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CChhhhhcCCcCcEEECcCCCCC
Confidence            66666666666666666666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.1e-19  Score=145.98  Aligned_cols=152  Identities=20%  Similarity=0.212  Sum_probs=132.5

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT  100 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  100 (244)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|+++.|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67999999999 6787665  78999999999999766778999999999999999999888999999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCC
Q 042227          101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~  176 (244)
                      .++...+..|..+++|++|++++|++++..|..|..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~N~~~c~  167 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH-LAQNPFICD  167 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCEECS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE-eCCCCcCCC
Confidence            99976666689999999999999999988889999999999 99999999977664 33345555555 678887774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=160.35  Aligned_cols=150  Identities=22%  Similarity=0.244  Sum_probs=111.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..+..|.++++|++|++++|.+++..+..|.++++|+.|++++|+++...+..|..+++|++|++++|+++.
T Consensus        71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            57899988888899999999999999999997777889999999999999999996556689999999999999999986


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      ..+..+..+++|+.|+++.|+..+.++ ..|.++++|++|++++|+++ .+|. +..+++|+ |++++|.+++.
T Consensus       151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred             cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCcc
Confidence            666677777777777777644332333 34556666666666666655 3332 44555555 55555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.2e-19  Score=157.42  Aligned_cols=103  Identities=18%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            45666666555667777777777777777776556666777777777777777763333335667777777777777766


Q ss_pred             chhhhccCCCCCceecCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPS  103 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~  103 (244)
                      ..+..+..+++|+.|+++.|.++
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCS
T ss_pred             cChhhccCCCCCCEEECCCCcCC
Confidence            66666666677777666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.2e-19  Score=154.02  Aligned_cols=135  Identities=17%  Similarity=0.292  Sum_probs=67.4

Q ss_pred             CCCCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCT   90 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~   90 (244)
                      .+.++++|++|++++|.++.  ..+..+.++++|+.|++++|.++ .+|..+.  ++|++|++++|++++..+..+..++
T Consensus       140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence            34444444444444444432  33344444444444444444444 3333322  4455555555555544455555555


Q ss_pred             CCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           91 AFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      +|+.|+++.|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+ +++++|++++
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            5555555555555444444555555555555555555 4555555555555 5555555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.82  E-value=6.1e-20  Score=144.46  Aligned_cols=128  Identities=20%  Similarity=0.218  Sum_probs=115.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCc-cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPS-NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      +++|.++ .+|..+..  +|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|+++
T Consensus        15 ~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~   91 (192)
T 1w8a_A           15 CTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             CTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             cCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence            4678884 78876654  899999999999966554 4899999999999999999888999999999999999999999


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP  131 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  131 (244)
                      +..+..+..+++|+.|+++.|.+++..|..+..+++|++|++++|.+++..+
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8888889999999999999999999999999999999999999999996544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.5e-19  Score=159.93  Aligned_cols=156  Identities=19%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc--------------------
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA--------------------   60 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--------------------   60 (244)
                      |++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.++...+.                    
T Consensus       106 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             CCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence            345555555555555556666666666655544444455555555555555554422111                    


Q ss_pred             ---------------------------ccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCC
Q 042227           61 ---------------------------SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSL  113 (244)
Q Consensus        61 ---------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l  113 (244)
                                                 .+..+++|++|++++|++++..|..+..+++|+.|+++.|.+++..+..|..+
T Consensus       186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence                                       23344566677777777777778899999999999999999999889999999


Q ss_pred             CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      ++|++|++++|++++..+..+..+++|+ +++++|++.+.+...
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            9999999999999977777889999999 999999999887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=5e-20  Score=168.12  Aligned_cols=156  Identities=22%  Similarity=0.184  Sum_probs=119.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++++|++++
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            56788887777788888888888888888887777788888888888888888876777788888888888888888887


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE---EEcccCCCcCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS---LNLSYNDLTGPIPLT  156 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~---L~ls~N~l~~~~p~~  156 (244)
                      ..+..+.++++|+.|+++.|.+++..+..+..+++|++|++++|++++..|..++.++.|+   +++++|.+++..|..
T Consensus       120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~  198 (606)
T 3t6q_A          120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA  198 (606)
T ss_dssp             GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred             CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence            6677788888888888888888764333344488888888888888866666666666654   678888887766654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=1e-19  Score=157.83  Aligned_cols=81  Identities=23%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..+.++++|++|++++|.++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus       100 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            57888888778888999999999999999995444456889999999999999987777788888999999999888875


Q ss_pred             c
Q 042227           81 E   81 (244)
Q Consensus        81 ~   81 (244)
                      .
T Consensus       180 ~  180 (390)
T 3o6n_A          180 V  180 (390)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2.6e-20  Score=166.46  Aligned_cols=170  Identities=23%  Similarity=0.238  Sum_probs=102.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCc------------------------
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSG------------------------   56 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------------   56 (244)
                      |++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++                        
T Consensus        41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~  118 (487)
T 3oja_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR  118 (487)
T ss_dssp             CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred             eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence            57788887777788888888888888888886544  6677777666666665542                        


Q ss_pred             ----------------cCCcccCCCCCCcEEEccCCCCCCchhhhcc-CCCCCceecCCCCCCCCCCCcccCCCCCCCee
Q 042227           57 ----------------GIPASFCSLPSLVWLKLSKNDLSGELFVALQ-NCTAFTGFPEFITEPSGRIPENIGSLQKLETL  119 (244)
Q Consensus        57 ----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  119 (244)
                                      ..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. | ....+++|++|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence                            2233444445555555555555544444443 455555555555555533 1 12346666666


Q ss_pred             cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCCccccCCCCCCC
Q 042227          120 DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       120 ~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~~~c~  176 (244)
                      ++++|.+++ +|..+..+++|+ |++++|.+++.++....+..+.... +.+|+..|+
T Consensus       197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~-l~~N~l~c~  252 (487)
T 3oja_A          197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD-LRGNGFHCG  252 (487)
T ss_dssp             ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE-CTTCCBCHH
T ss_pred             ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE-cCCCCCcCc
Confidence            666666663 444466677777 7777777775333333334444444 566666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=3.2e-19  Score=151.53  Aligned_cols=147  Identities=21%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+.  ++|++|++++|++++
T Consensus        61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~  137 (332)
T 2ft3_A           61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK  137 (332)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc
Confidence            4667777666667777777888888877777666777777777777777777776 4444333  455555555555554


Q ss_pred             chhhhccCCCCCceecCCCCC----------------------------------------------CCCCCCcccCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITE----------------------------------------------PSGRIPENIGSLQ  114 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~----------------------------------------------l~~~~p~~~~~l~  114 (244)
                      ..+..+..+++|+.|+++.|.                                              +++..+..+..++
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~  217 (332)
T 2ft3_A          138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS  217 (332)
T ss_dssp             CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred             cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCC
Confidence            434444444444444444443                                              4333344455566


Q ss_pred             CCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227          115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus       115 ~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      +|++|++++|++++..+..+..+++|+ +++++|.++
T Consensus       218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            666666666666654445566666666 666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1e-19  Score=166.36  Aligned_cols=149  Identities=23%  Similarity=0.194  Sum_probs=105.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       106 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            57788888777778888888888888888885555556888888888888888887777778888888888888887764


Q ss_pred             chh-----------------------------------------------------------hhccCCCCCceecCCCCC
Q 042227           81 ELF-----------------------------------------------------------VALQNCTAFTGFPEFITE  101 (244)
Q Consensus        81 ~~~-----------------------------------------------------------~~l~~l~~L~~L~l~~n~  101 (244)
                      ...                                                           ..+..+++|+.|++++|.
T Consensus       186 ~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence            321                                                           224455666666666666


Q ss_pred             CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227          102 PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus       102 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      +++..|..++.+++|+.|++++|.++ .+|..+..+++|+ |++++|.++
T Consensus       266 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             CCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred             cCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC
Confidence            66666666666666666666666666 3455555566666 666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=4.8e-20  Score=168.25  Aligned_cols=155  Identities=22%  Similarity=0.214  Sum_probs=136.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+|++..|..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|++++..+..|.++++|++|++++|++++
T Consensus        59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~  138 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  138 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred             eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence            68999998778899999999999999999997778889999999999999999996666789999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce----E-EEcccCCCcCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL----S-LNLSYNDLTGPIP  154 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~-L~ls~N~l~~~~p  154 (244)
                      ..+..++++++|+.|+++.|.+++ ..|..++.+++|++|++++|++++..+..+..+..+    . ++++.|.+....+
T Consensus       139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~  218 (635)
T 4g8a_A          139 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  218 (635)
T ss_dssp             STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred             CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc
Confidence            777889999999999999999976 467889999999999999999997777776654332    3 8889998876544


Q ss_pred             C
Q 042227          155 L  155 (244)
Q Consensus       155 ~  155 (244)
                      .
T Consensus       219 ~  219 (635)
T 4g8a_A          219 G  219 (635)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=3.2e-19  Score=151.49  Aligned_cols=120  Identities=25%  Similarity=0.298  Sum_probs=102.7

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|+++ .
T Consensus        41 ~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~  116 (332)
T 2ft3_A           41 SDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E  116 (332)
T ss_dssp             CSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-S
T ss_pred             CCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-c
Confidence            566675 6777664  78999999999999777889999999999999999999777999999999999999999998 5


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      +|..+.  ++|+.|+++.|.+++..+..+.++++|++|++++|.++
T Consensus       117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            665554  89999999999998766666888888888888877774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=4.1e-19  Score=150.65  Aligned_cols=148  Identities=24%  Similarity=0.305  Sum_probs=82.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcc-------------------
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPAS-------------------   61 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------------------   61 (244)
                      |++|++++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..                   
T Consensus        59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~  137 (330)
T 1xku_A           59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVR  137 (330)
T ss_dssp             CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBC
T ss_pred             CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccC
Confidence            4677787666667888888888888888888666778888888888888888776 44443                   


Q ss_pred             ---cCCCCCCcEEEccCCCCCC--chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCC
Q 042227           62 ---FCSLPSLVWLKLSKNDLSG--ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSS  136 (244)
Q Consensus        62 ---~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~  136 (244)
                         +..+++|++|++++|.++.  ..+..+..+++|+.|+++.|.++. +|..+.  ++|++|++++|++++..|..+..
T Consensus       138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~  214 (330)
T 1xku_A          138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG  214 (330)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred             HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence               3444455555555555432  334444445444444444443331 111111  23333333344443333344444


Q ss_pred             CCceE-EEcccCCCcCC
Q 042227          137 MTRLS-LNLSYNDLTGP  152 (244)
Q Consensus       137 l~~L~-L~ls~N~l~~~  152 (244)
                      +++|+ |++++|.+++.
T Consensus       215 l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          215 LNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CTTCCEEECCSSCCCEE
T ss_pred             CCCCCEEECCCCcCcee
Confidence            44555 55555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=9.6e-20  Score=153.47  Aligned_cols=168  Identities=23%  Similarity=0.189  Sum_probs=131.8

Q ss_pred             CCCCcCCccCCcCC--CCCCCccEEEccCCcccccCC----ccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEcc
Q 042227            1 LSRSLLNGTIPPSM--SEMKNFSFLDLSNNILSGEIP----SNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLS   74 (244)
Q Consensus         1 Ls~N~l~~~ip~~l--~~l~~L~~L~l~~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls   74 (244)
                      |++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  177 (310)
T 4glp_A           98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS  177 (310)
T ss_dssp             EESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred             eeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence            46889999999888  889999999999999997554    344578999999999999987777899999999999999


Q ss_pred             CCCCCCc--hh--hhccCCCCCceecCCCCCCCCCCCc----ccCCCCCCCeecCCCCCCCCCCccccCCC---CceE-E
Q 042227           75 KNDLSGE--LF--VALQNCTAFTGFPEFITEPSGRIPE----NIGSLQKLETLDLSSNHLSGPIPPSMSSM---TRLS-L  142 (244)
Q Consensus        75 ~N~l~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~p~~l~~l---~~L~-L  142 (244)
                      +|++.+.  ++  ..+..+++|+.|+++.|.++. ++.    .++.+++|++|++++|++++..|..+..+   ++|+ |
T Consensus       178 ~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L  256 (310)
T 4glp_A          178 DNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL  256 (310)
T ss_dssp             SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred             CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence            9998753  32  234688999999999999863 333    25678999999999999997778777776   6899 9


Q ss_pred             EcccCCCcCCCCCCcccccCCCCccccCCC
Q 042227          143 NLSYNDLTGPIPLTKQFQTFNDPSIYMGNA  172 (244)
Q Consensus       143 ~ls~N~l~~~~p~~~~~~~l~~~~~~~~n~  172 (244)
                      ++++|.++ .+|.... ..+.... ..+|.
T Consensus       257 ~Ls~N~l~-~lp~~~~-~~L~~L~-Ls~N~  283 (310)
T 4glp_A          257 NLSFAGLE-QVPKGLP-AKLRVLD-LSSNR  283 (310)
T ss_dssp             ECCSSCCC-SCCSCCC-SCCSCEE-CCSCC
T ss_pred             ECCCCCCC-chhhhhc-CCCCEEE-CCCCc
Confidence            99999998 5565432 4454444 44443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=157.24  Aligned_cols=148  Identities=22%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|++++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|++++.
T Consensus        60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  139 (353)
T 2z80_A           60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL  139 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred             CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence            34444433333444445555555555544443344444444555555555544422222244444555555555444422


Q ss_pred             hh-hhccCCCCCceecCCCCC-CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCC
Q 042227           82 LF-VALQNCTAFTGFPEFITE-PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDL  149 (244)
Q Consensus        82 ~~-~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l  149 (244)
                      .+ ..+..+++|+.|+++.|. +....+..++++++|++|++++|++++..|..+..+++|+ +++++|.+
T Consensus       140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            22 234444444444444442 3333333444444444444444444444444444444444 44444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5e-19  Score=142.97  Aligned_cols=154  Identities=19%  Similarity=0.194  Sum_probs=132.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227           19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF   98 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~   98 (244)
                      ..+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3578999999999 7777654  899999999999998778999999999999999999987767788999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCC
Q 042227           99 ITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~  176 (244)
                      .|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY-LFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE-eeCCCccCC
Confidence            99999877777899999999999999999 8899999999999 99999999966553 23345555555 678887775


Q ss_pred             C
Q 042227          177 P  177 (244)
Q Consensus       177 ~  177 (244)
                      .
T Consensus       175 c  175 (229)
T 3e6j_A          175 C  175 (229)
T ss_dssp             B
T ss_pred             c
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=8.3e-20  Score=153.86  Aligned_cols=165  Identities=15%  Similarity=0.134  Sum_probs=100.5

Q ss_pred             CCCcCCccCC----cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc--C--CcccCCCCCCcEEEc
Q 042227            2 SRSLLNGTIP----PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG--I--PASFCSLPSLVWLKL   73 (244)
Q Consensus         2 s~N~l~~~ip----~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L   73 (244)
                      ++|.+++..|    ..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++
T Consensus       125 s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          125 RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred             ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence            4566665444    2334567777777777777766666677777777777777776531  2  222356677777777


Q ss_pred             cCCCCCCchhh----hccCCCCCceecCCCCCCCCCCCcccCCC---CCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227           74 SKNDLSGELFV----ALQNCTAFTGFPEFITEPSGRIPENIGSL---QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS  145 (244)
Q Consensus        74 s~N~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls  145 (244)
                      ++|+++. ++.    .+..+++|+.|+++.|.+++..|+.+..+   ++|++|++++|+++ .+|..+.  ++|+ |+++
T Consensus       205 s~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          205 RNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             CSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             CCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence            7777752 222    24566777777777777776666666555   47777777777777 5666553  5677 7777


Q ss_pred             cCCCcCCCCCCcccccCCCCccccCCC
Q 042227          146 YNDLTGPIPLTKQFQTFNDPSIYMGNA  172 (244)
Q Consensus       146 ~N~l~~~~p~~~~~~~l~~~~~~~~n~  172 (244)
                      +|++++. |....+..+.... +.+|+
T Consensus       281 ~N~l~~~-~~~~~l~~L~~L~-L~~N~  305 (310)
T 4glp_A          281 SNRLNRA-PQPDELPEVDNLT-LDGNP  305 (310)
T ss_dssp             SCCCCSC-CCTTSCCCCSCEE-CSSTT
T ss_pred             CCcCCCC-chhhhCCCccEEE-CcCCC
Confidence            7777653 2233344444433 44443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=144.66  Aligned_cols=135  Identities=19%  Similarity=0.194  Sum_probs=118.7

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT  100 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  100 (244)
                      +++++++|.++ .+|..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|+++.|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            67899999998 6776554  68999999999998 78888999999999999999999888888999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227          101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      .+++..|..|..+++|++|++++|+++...+..|..+++|+ +++++|++.+.+...+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~  148 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS  148 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence            99988888899999999999999999965556789999999 999999999887654433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=8.1e-20  Score=165.32  Aligned_cols=152  Identities=21%  Similarity=0.202  Sum_probs=74.5

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++.
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  115 (570)
T 2z63_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL  115 (570)
T ss_dssp             CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred             cCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence            44445444444455555555555555555544444455555555555555555443344455555555555555555433


Q ss_pred             hhhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce----E-EEcccCCCcCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL----S-LNLSYNDLTGPI  153 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~-L~ls~N~l~~~~  153 (244)
                      .+..+.++++|++|+++.|.+++ .+|..++++++|++|++++|++++..+..++.+..|    . +++++|.+++..
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~  193 (570)
T 2z63_A          116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (570)
T ss_dssp             TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred             CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence            33345555555555555555443 244445555555555555555554334444444444    3 555555554433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=144.29  Aligned_cols=129  Identities=18%  Similarity=0.161  Sum_probs=119.6

Q ss_pred             CCCCcCCccCC-cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIP-PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|+|++..| ..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus        39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence            57899987765 45789999999999999999877779999999999999999999777788999999999999999999


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCC
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP  129 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  129 (244)
                      +..|..+..+++|+.|+++.|.+++..|..+..+++|++|++++|.++..
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            98899999999999999999999998899999999999999999999854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.2e-19  Score=147.28  Aligned_cols=151  Identities=19%  Similarity=0.120  Sum_probs=119.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCc-ccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNI-LSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      |++|++++..+..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|++
T Consensus        38 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l  117 (239)
T 2xwt_C           38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL  117 (239)
T ss_dssp             EESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred             EeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence            35788887666688889999999999996 8866566888889999999988 888865567788889999999999988


Q ss_pred             CCchhhhccCCCCCc---eecCCCC-CCCCCCCcccCCCCCCC-eecCCCCCCCCCCccccCCCCceE-EEcccCC-CcC
Q 042227           79 SGELFVALQNCTAFT---GFPEFIT-EPSGRIPENIGSLQKLE-TLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND-LTG  151 (244)
Q Consensus        79 ~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~-l~~  151 (244)
                      ++ +|. +..+++|+   .|+++.| .+++..+..|.++++|+ +|++++|+++ .+|......++|+ +++++|+ +++
T Consensus       118 ~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          118 KM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             CS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE
T ss_pred             cc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc
Confidence            85 555 77788887   8889888 88766666788889999 9999999988 5555443447888 9999995 774


Q ss_pred             CCC
Q 042227          152 PIP  154 (244)
Q Consensus       152 ~~p  154 (244)
                      ..+
T Consensus       195 i~~  197 (239)
T 2xwt_C          195 IDK  197 (239)
T ss_dssp             ECT
T ss_pred             CCH
Confidence            433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=2.3e-19  Score=165.93  Aligned_cols=155  Identities=21%  Similarity=0.164  Sum_probs=124.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++..+..+.++++|++|++++|.+++..|+.+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus        32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  111 (680)
T 1ziw_A           32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK  111 (680)
T ss_dssp             CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence            56788877666678888888888888888887778888888888888888888884444568888888888888888887


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC--CCCceE-EEcccCCCcCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS--SMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~--~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      ..|..+.++++|+.|+++.|.+++..|..++++++|++|++++|++++..+..+.  .+++|+ +++++|.+++..|.
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            7777888888888888888888887778888888888888888888866555543  457888 88888888876654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=1.1e-19  Score=163.85  Aligned_cols=149  Identities=20%  Similarity=0.161  Sum_probs=99.8

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL   82 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~   82 (244)
                      +|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..
T Consensus        14 ~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           14 SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence            45554 5565543  56777777777777666666777777777777777777655666777777777777777777666


Q ss_pred             hhhccCCCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCCCc-cccCCCCceE-EEcccCCCcCCCC
Q 042227           83 FVALQNCTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGPIP-PSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        83 ~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      +..+..+++|++|+++.|.+++ ..|..++++++|++|++++|++.+.+| ..+..+++|+ +++++|.+++.+|
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            6667777777777777777665 345566777777777777776433443 4566677777 7777777766544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=5.5e-19  Score=159.35  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=137.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..|..+.++++|++|++++|++++..|+.|.++++|++|++++|.+++..|..++++++|++|++++|++++
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            67899998889999999999999999999998888899999999999999999997777779999999999999999986


Q ss_pred             -chhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           81 -ELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        81 -~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                       ..|..+.++++|+.|+++.|.+.+.+| ..+.++++|++|++++|++++..|..+..+++|+ +++++|.+.
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence             457789999999999999998655555 6799999999999999999988999999999999 999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=1.5e-19  Score=146.65  Aligned_cols=158  Identities=17%  Similarity=0.164  Sum_probs=131.9

Q ss_pred             CCCCc-CCccCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCc---EEEccC
Q 042227            1 LSRSL-LNGTIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLV---WLKLSK   75 (244)
Q Consensus         1 Ls~N~-l~~~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~   75 (244)
                      |++|+ ++...+..+.++++|++|++++ |.+++..+..|.++++|++|++++|.++ .+|. +..+++|+   +|++++
T Consensus        62 l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C           62 VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITD  139 (239)
T ss_dssp             EECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEES
T ss_pred             CCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCC
Confidence            35776 7766666889999999999999 9999766788999999999999999998 4776 88888888   999999


Q ss_pred             C-CCCCchhhhccCCCCCc-eecCCCCCCCCCCCcccCCCCCCCeecCCCCC-CCCCCccccCCC-CceE-EEcccCCCc
Q 042227           76 N-DLSGELFVALQNCTAFT-GFPEFITEPSGRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSM-TRLS-LNLSYNDLT  150 (244)
Q Consensus        76 N-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l-~~L~-L~ls~N~l~  150 (244)
                      | ++++..+..+..+++|+ .|+++.|.++ .+|......++|++|++++|+ +++..+..+..+ ++|+ +++++|+++
T Consensus       140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            9 99877777899999999 9999999998 555544344899999999995 996556788999 9999 999999998


Q ss_pred             CCCCCCcccccCC
Q 042227          151 GPIPLTKQFQTFN  163 (244)
Q Consensus       151 ~~~p~~~~~~~l~  163 (244)
                      +. |.. .+..+.
T Consensus       219 ~l-~~~-~~~~L~  229 (239)
T 2xwt_C          219 AL-PSK-GLEHLK  229 (239)
T ss_dssp             CC-CCT-TCTTCS
T ss_pred             cC-Chh-HhccCc
Confidence            54 433 344443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=8.8e-20  Score=154.22  Aligned_cols=150  Identities=21%  Similarity=0.183  Sum_probs=93.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCc----------------ccCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA----------------SFCS   64 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----------------~~~~   64 (244)
                      |++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+.                ....
T Consensus        41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~  118 (317)
T 3o53_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR  118 (317)
T ss_dssp             CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC
T ss_pred             CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc
Confidence            56788887777778888888888888888875443  77777777777777776531100                0112


Q ss_pred             CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCccccCCCCceE-E
Q 042227           65 LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-L  142 (244)
Q Consensus        65 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L  142 (244)
                      +++|++|++++|++++..+..+..+++|+.|+++.|.+++..+..+ ..+++|++|++++|++++ ++. ...+++|+ +
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEE
Confidence            4556666666666665555566666667777776666665544444 345666666666666652 222 22355555 6


Q ss_pred             EcccCCCcCCCC
Q 042227          143 NLSYNDLTGPIP  154 (244)
Q Consensus       143 ~ls~N~l~~~~p  154 (244)
                      ++++|.+++..+
T Consensus       197 ~Ls~N~l~~l~~  208 (317)
T 3o53_A          197 DLSSNKLAFMGP  208 (317)
T ss_dssp             ECCSSCCCEECG
T ss_pred             ECCCCcCCcchh
Confidence            666666654433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=149.68  Aligned_cols=151  Identities=25%  Similarity=0.202  Sum_probs=131.5

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|++++.
T Consensus        39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            466676 6777655  5899999999999976666899999999999999999977788899999999999999999977


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCC-CCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSN-HLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N-~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      .+..+..+++|+.|+++.|.+++..+ ..+..+++|++|++++| .++...+..+..+++|+ +++++|.+++..|.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            66779999999999999999985433 47899999999999999 57755677899999999 99999999887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=3.4e-19  Score=168.96  Aligned_cols=152  Identities=21%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccC-CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEI-PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|+.|.++++|++|++++|.+++
T Consensus        32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            344454444445555555555555555333222 4445555555555555555544444555555555555555555544


Q ss_pred             chhhh--ccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccccCCC--CceE-EEcccCCCcCCC
Q 042227           81 ELFVA--LQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPSMSSM--TRLS-LNLSYNDLTGPI  153 (244)
Q Consensus        81 ~~~~~--l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l--~~L~-L~ls~N~l~~~~  153 (244)
                      ..+..  +.++++|+.|+++.|.+++..+ ..++++++|++|++++|.+++..+..+..+  ++|+ +++++|.+.+..
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence            33332  4455555555555555444322 234555555555555555544444444443  3444 444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=6.9e-19  Score=138.78  Aligned_cols=144  Identities=13%  Similarity=0.196  Sum_probs=124.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        51 l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           51 LANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             EESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             ccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            3577887 666 6889999999999999876 3 3478899999999999999997788999999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      ..+..+..+++|+.|+++.|.+.+.+| .+..+++|++|++++|++++ ++ .+..+++|+ +++++|++.+
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            889999999999999999998444566 68999999999999999994 55 788999999 9999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=2.2e-18  Score=145.25  Aligned_cols=130  Identities=23%  Similarity=0.341  Sum_probs=70.0

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++..+  +..+++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ  154 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence            4555555555555555552 22 34555555555555555552 222 5555555555555555554322  55556666


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCC
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI  153 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~  153 (244)
                      .|+++.|.+++. +. +..+++|++|++++|++++ ++. +..+++|+ |++++|++++..
T Consensus       155 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          155 YLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             EEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc
Confidence            666666655542 22 5566666666666666653 332 55566666 666666665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=1.2e-18  Score=133.74  Aligned_cols=134  Identities=20%  Similarity=0.132  Sum_probs=118.9

Q ss_pred             CCCCccEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           16 EMKNFSFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      ..++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4588999999999998 67888889999999999999999854  78899999999999999999878888888999999


Q ss_pred             ecCCCCCCCCCC-CcccCCCCCCCeecCCCCCCCCCCc---cccCCCCceE-EEcccCCCcC
Q 042227           95 FPEFITEPSGRI-PENIGSLQKLETLDLSSNHLSGPIP---PSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        95 L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      |+++.|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+ +++++|.+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999998642 2679999999999999999995444   3789999999 9999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.77  E-value=4.7e-18  Score=131.60  Aligned_cols=134  Identities=19%  Similarity=0.136  Sum_probs=112.0

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           20 FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        20 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      .+.+++++|.++ .+|..+.  ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+++.
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888888888 5665443  6889999999998865566778889999999999999877777788899999999999


Q ss_pred             CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|+ +++++|++.+.+|..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  143 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  143 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence            998877777789999999999999999965555678899999 999999999988743

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.9e-18  Score=143.41  Aligned_cols=157  Identities=21%  Similarity=0.245  Sum_probs=117.4

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++. +| .+..+++|++|++++|++++. +. +..+++|+.|++++|.++ .+| .+..+++|++|++++|++++
T Consensus        53 l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           53 ANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             CTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC
T ss_pred             ccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC
Confidence            45666753 33 477788999999999998854 33 888889999999999887 344 48888899999999998886


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      .  ..+..+++|+.|+++.|.+++.  ..+..+++|++|++++|++++. +. +..+++|+ |++++|.+++ +|....+
T Consensus       127 ~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l  199 (291)
T 1h6t_A          127 I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LRALAGL  199 (291)
T ss_dssp             C--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CGGGTTC
T ss_pred             C--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-ChhhccC
Confidence            4  4678888899999998888864  5688888899999999988854 33 88888888 9999998875 3333334


Q ss_pred             ccCCCCccccCC
Q 042227          160 QTFNDPSIYMGN  171 (244)
Q Consensus       160 ~~l~~~~~~~~n  171 (244)
                      ..+.... ..+|
T Consensus       200 ~~L~~L~-l~~n  210 (291)
T 1h6t_A          200 KNLDVLE-LFSQ  210 (291)
T ss_dssp             TTCSEEE-EEEE
T ss_pred             CCCCEEE-CcCC
Confidence            4444333 3444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=8.8e-18  Score=141.50  Aligned_cols=151  Identities=17%  Similarity=0.305  Sum_probs=124.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++. +| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++ .+..+++|++|++++|++++
T Consensus        48 l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           48 AFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             CTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             eeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC
Confidence            45677763 55 57889999999999999995 444 899999999999999998 444 68899999999999999986


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      . + .+..+++|+.|+++.|.+++..+  +..+++|++|++++|++++ ++. +..+++|+ |++++|.+++..+ ...+
T Consensus       122 ~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l  194 (308)
T 1h6u_A          122 V-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASL  194 (308)
T ss_dssp             C-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred             c-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCC
Confidence            4 3 38999999999999999986533  8899999999999999994 555 88999999 9999999986544 3333


Q ss_pred             ccCCC
Q 042227          160 QTFND  164 (244)
Q Consensus       160 ~~l~~  164 (244)
                      ..+..
T Consensus       195 ~~L~~  199 (308)
T 1h6u_A          195 PNLIE  199 (308)
T ss_dssp             TTCCE
T ss_pred             CCCCE
Confidence            44433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=2.1e-19  Score=167.70  Aligned_cols=144  Identities=26%  Similarity=0.269  Sum_probs=122.1

Q ss_pred             cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227            9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN   88 (244)
Q Consensus         9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~   88 (244)
                      ..|..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..++.+++|++|+|++|+|+ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34677889999999999999999 78888889999999999999999 89999999999999999999999 77999999


Q ss_pred             CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce-E-EEcccCCCcCCCCCC
Q 042227           89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL-S-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L-~-L~ls~N~l~~~~p~~  156 (244)
                      +++|+.|+++.|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+... . +++++|.+++.+|..
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            999999999999997 788889999999999999999998888877665433 2 678888888877764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=2.7e-18  Score=131.76  Aligned_cols=130  Identities=28%  Similarity=0.280  Sum_probs=115.8

Q ss_pred             CCCCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus        31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  108 (168)
T 2ell_A           31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK  108 (168)
T ss_dssp             CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred             CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence            5789998 88999999999999999999999965  78899999999999999999768888888999999999999998


Q ss_pred             Cch-hhhccCCCCCceecCCCCCCCCCCC---cccCCCCCCCeecCCCCCCCCCCccc
Q 042227           80 GEL-FVALQNCTAFTGFPEFITEPSGRIP---ENIGSLQKLETLDLSSNHLSGPIPPS  133 (244)
Q Consensus        80 ~~~-~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~ls~N~l~~~~p~~  133 (244)
                      +.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+. .+|..
T Consensus       109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            643 3789999999999999999996655   47899999999999999998 56654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=7e-18  Score=141.02  Aligned_cols=140  Identities=26%  Similarity=0.390  Sum_probs=123.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..+  +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + ..+..+++|+.|++++|++++
T Consensus        75 L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A           75 LNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred             ccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence            57899986443  8999999999999999995 44 48999999999999999984 4 468899999999999999986


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      .  ..+..+++|+.|+++.|.+++..+  +..+++|++|++++|++++ ++. +..+++|+ +++++|+++..
T Consensus       149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence            5  679999999999999999997554  8999999999999999994 554 89999999 99999999753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.75  E-value=1.2e-18  Score=131.11  Aligned_cols=129  Identities=23%  Similarity=0.211  Sum_probs=111.1

Q ss_pred             CCCCccEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           16 EMKNFSFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      ..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 77888889999999999999999854  77889999999999999999878888888999999


Q ss_pred             ecCCCCCCCCC-CCcccCCCCCCCeecCCCCCCCCCCc---cccCCCCceE-EEccc
Q 042227           95 FPEFITEPSGR-IPENIGSLQKLETLDLSSNHLSGPIP---PSMSSMTRLS-LNLSY  146 (244)
Q Consensus        95 L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~-L~ls~  146 (244)
                      |+++.|.+++. .+..++.+++|++|++++|++++..+   ..+..+++|+ +++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998863 34778899999999999999985544   4688888888 88763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=130.62  Aligned_cols=124  Identities=23%  Similarity=0.225  Sum_probs=112.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++ .+|..+.  ++|++|++++|.++ .+|..|.++++|+.|++++|.|++..+..|..+++|++|+|++|++++
T Consensus        17 ~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           17 CSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             CTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            3567776 6777654  68999999999999 788999999999999999999997777889999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG  128 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~  128 (244)
                      ..+..+..+++|+.|+++.|.++...+..|..+++|++|++++|.+..
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            888899999999999999999997666779999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=3.6e-17  Score=126.61  Aligned_cols=127  Identities=19%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|+++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus        15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~   91 (177)
T 2o6r_A           15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL   91 (177)
T ss_dssp             CSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence            566775 566544  37999999999999976667789999999999999999966667789999999999999999988


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP  131 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  131 (244)
                      .+..+..+++|+.|+++.|.+++..+..+..+++|++|++++|.+++..|
T Consensus        92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77888999999999999999997666667899999999999999996543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=9.9e-18  Score=142.83  Aligned_cols=138  Identities=22%  Similarity=0.304  Sum_probs=67.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+  +..+++|++|++++|++++.
T Consensus       163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          163 TESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             cCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence            4455543222  5566666666666666663 222 4455555555555555542222  44455555555555555433


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      .+  +..+++|+.|+++.|.+++.  +.+..+++|++|++++|++++ + ..+..+++|+ +++++|.+++
T Consensus       237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCG
T ss_pred             cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCC
Confidence            22  44555555555555554432  234445555555555555542 2 2344445555 5555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=2e-17  Score=136.38  Aligned_cols=128  Identities=20%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +..+++|++|++++|.++ .+| .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++ ++... . ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCC
T ss_pred             hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-Cccc
Confidence            444555555555555555 333 34555555555555555552 222 5555555555555555553 22211 1 5555


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      .|+++.|.+++.  +.+..+++|+.|++++|++++ ++ .+..+++|+ |++++|.+++.
T Consensus       110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            555555555532  235555555555555555552 22 345555555 55555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.8e-17  Score=151.56  Aligned_cols=138  Identities=25%  Similarity=0.300  Sum_probs=90.3

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+.. +| .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.++ .+| .+..+++|+.|+|++|++++.
T Consensus        51 ~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           51 NNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             TTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred             cCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCC
Confidence            4555542 33 46667777777777777774333  667777777777777776 333 566777777777777777642


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                        ..+..+++|+.|+++.|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+ |++++|.+++
T Consensus       125 --~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          125 --NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             --ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence              3466677777777777776653  456667777777777777764433  66666777 7777776664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=8.1e-18  Score=138.69  Aligned_cols=140  Identities=20%  Similarity=0.235  Sum_probs=120.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++ .+| .+..+++|++|++++|++++. +. +..+++|+.|++++|+++ .+|....  ++|++|++++|++++
T Consensus        48 l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~~~--~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           48 GDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGIPS--ACLSRLFLDNNELRD  120 (263)
T ss_dssp             CTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTCCC--SSCCEEECCSSCCSB
T ss_pred             CcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcccc--CcccEEEccCCccCC
Confidence            4678886 456 688999999999999999954 44 899999999999999998 4554433  899999999999986


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPI  153 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~  153 (244)
                      .  ..+..+++|+.|+++.|.+++. + .+..+++|++|++++|++++.  ..+..+++|+ +++++|++++..
T Consensus       121 ~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          121 T--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             S--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             C--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            3  3699999999999999999864 4 688999999999999999964  7789999999 999999998763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=4.8e-18  Score=151.78  Aligned_cols=144  Identities=14%  Similarity=0.007  Sum_probs=125.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC-CCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC-SLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.+++..+.   .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            467777765443   468899999999999988888999999999999999999987888776 7999999999999998


Q ss_pred             CchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           80 GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        80 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      +. + ....+++|+.|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+ +++++|++.+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred             cc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence            65 2 344699999999999999975 445899999999999999999 5888899999999 9999999983

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.1e-17  Score=125.95  Aligned_cols=121  Identities=26%  Similarity=0.280  Sum_probs=109.0

Q ss_pred             CCCCcCC-ccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLN-GTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~-~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      +++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus        24 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred             ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence            5789998 89999999999999999999999965  77899999999999999999768888888999999999999999


Q ss_pred             Cc-hhhhccCCCCCceecCCCCCCCCCCC---cccCCCCCCCeecCCC
Q 042227           80 GE-LFVALQNCTAFTGFPEFITEPSGRIP---ENIGSLQKLETLDLSS  123 (244)
Q Consensus        80 ~~-~~~~l~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~ls~  123 (244)
                      +. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.||+++
T Consensus       102 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            74 45889999999999999999997655   4788999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=5.8e-18  Score=143.02  Aligned_cols=128  Identities=22%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhc-cCCCCCceec
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVAL-QNCTAFTGFP   96 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~   96 (244)
                      ++|++|++++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|+.|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            5555555555555533222   23455555555555554444455555555555555555555444444 2455555555


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           97 EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      ++.|.+++. +. ...+++|++|++++|+++ .+|..+..+++|+ +++++|.++.
T Consensus       176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence            555555533 21 223555555555555555 3344455555555 5555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=4.9e-17  Score=144.24  Aligned_cols=140  Identities=26%  Similarity=0.395  Sum_probs=90.7

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++..+  +..+++|
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            34555666666666666664332  5666666666666666663 332 6666777777777777765433  6677777


Q ss_pred             ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCC
Q 042227           93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFN  163 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~  163 (244)
                      +.|+++.|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+ +++++|++++..| ...+..+.
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~  378 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRIT  378 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence            777777777776544  66777777777777777743  4577777888 8888888877666 33334443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=2.8e-17  Score=140.05  Aligned_cols=160  Identities=19%  Similarity=0.339  Sum_probs=132.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.+++ ++. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++
T Consensus       184 l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          184 LNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             CTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             ccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC
Confidence            46788874 333 7889999999999999995433  7889999999999999984 444 8899999999999999986


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      .  ..+..+++|+.|++++|.+++.  +.+..+++|++|++++|++++..+..+..+++|+ +++++|++++..| ...+
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l  332 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL  332 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC
T ss_pred             C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh
Confidence            4  5688999999999999999864  4588999999999999999988888899999999 9999999998766 4455


Q ss_pred             ccCCCCccccCCC
Q 042227          160 QTFNDPSIYMGNA  172 (244)
Q Consensus       160 ~~l~~~~~~~~n~  172 (244)
                      ..+.... +.+|+
T Consensus       333 ~~L~~L~-l~~N~  344 (347)
T 4fmz_A          333 SKMDSAD-FANQV  344 (347)
T ss_dssp             TTCSEES-SSCC-
T ss_pred             hccceee-hhhhc
Confidence            5555444 44543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=6.8e-17  Score=147.79  Aligned_cols=140  Identities=26%  Similarity=0.395  Sum_probs=124.2

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++
T Consensus        72 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A           72 LNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred             eeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC
Confidence            57899986544  8899999999999999994 44 68999999999999999984 4 458899999999999999997


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      .  ..+..+++|+.|+++.|.+++..|  +..+++|+.|+|++|++++ ++ .+..+++|+ |++++|++.+.
T Consensus       146 l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          146 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            5  689999999999999999997666  9999999999999999995 44 689999999 99999999865

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=7.1e-17  Score=146.51  Aligned_cols=136  Identities=22%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCccc-----------------C
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASF-----------------C   63 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----------------~   63 (244)
                      |++|+|+ .+|   ..+++|++|++++|.|++ +|. +.+  +|+.|++++|.+++ +|..+                 .
T Consensus        87 Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~  157 (571)
T 3cvr_A           87 ITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNNQLTMLPE  157 (571)
T ss_dssp             CCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCCccCcCCC
Confidence            3455555 444   234555555555555553 444 332  45555555555542 33300                 0


Q ss_pred             CCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCC-------CeecCCCCCCCCCCccccCC
Q 042227           64 SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL-------ETLDLSSNHLSGPIPPSMSS  136 (244)
Q Consensus        64 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~N~l~~~~p~~l~~  136 (244)
                      .+++|++|++++|++++ +|. +.  ++|+.|+++.|.++ .+|. +..  +|       +.|++++|+|+ .+|..+..
T Consensus       158 ~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~  228 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS  228 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG
T ss_pred             cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc
Confidence            23445555555555543 333 32  45555555555555 3444 332  44       55566666655 45555555


Q ss_pred             CCceE-EEcccCCCcCCCC
Q 042227          137 MTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus       137 l~~L~-L~ls~N~l~~~~p  154 (244)
                      +++|+ |++++|++++.+|
T Consensus       229 l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          229 LDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             SCTTEEEECCSSSCCHHHH
T ss_pred             CCCCCEEEeeCCcCCCcCH
Confidence            66666 6666666655444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=1.4e-16  Score=141.30  Aligned_cols=140  Identities=24%  Similarity=0.349  Sum_probs=123.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.+++..|  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            46788876544  8899999999999999996443  8899999999999999985433  7899999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      ..|  +..+++|+.|+++.|.+++.  ..+..+++|+.|++++|++++..|  +..++.|+ +++++|++++.
T Consensus       324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            766  78999999999999999875  468999999999999999997666  89999999 99999999974

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=3.3e-16  Score=142.12  Aligned_cols=127  Identities=27%  Similarity=0.346  Sum_probs=93.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.+++ +|..+.  ++|++|++++|.|+ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|++++|++++
T Consensus        66 Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           66 LNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             eCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence            57889986 887664  89999999999999 677   457999999999999995 777 654  88888888888886


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                       +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|+ |++++|.|+
T Consensus       135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence             554   56777777777777765 444   35566666666666663 554 43  5555 555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=3.2e-17  Score=153.05  Aligned_cols=126  Identities=20%  Similarity=0.186  Sum_probs=106.9

Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCC
Q 042227           26 SNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGR  105 (244)
Q Consensus        26 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  105 (244)
                      +.|.+. ..|+.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++.|.++ .
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            334444 55788999999999999999998 78888889999999999999999 88999999999999999999999 7


Q ss_pred             CCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          106 IPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       106 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      +|..++.+++|++|+|++|.|+ .+|..|..+++|+ |++++|.+++.+|..
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            8999999999999999999998 8899999999999 999999999887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=4.2e-17  Score=126.24  Aligned_cols=133  Identities=17%  Similarity=0.110  Sum_probs=112.5

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+.++.+|++|++++|.++ .+|......++|+.|++++|.+++ + ..+..+++|++|++++|++++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4567899999999999999 556533334499999999999995 4 688999999999999999996555566999999


Q ss_pred             ceecCCCCCCCCCCCc--ccCCCCCCCeecCCCCCCCCCCccc----cCCCCceE-EEcccCCCc
Q 042227           93 TGFPEFITEPSGRIPE--NIGSLQKLETLDLSSNHLSGPIPPS----MSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~----l~~l~~L~-L~ls~N~l~  150 (244)
                      +.|+++.|.+. .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+ +|+++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999996 4665  7889999999999999998 56764    88899999 999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=1.2e-15  Score=135.27  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+++ +| .+..+++|++|++++|.+++ +|  +..+++|++|++++|.+++ ++  ++.+++|++|++++|++++.
T Consensus        50 s~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           50 HNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             CSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             cCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee
Confidence            4555553 23 35555555555555555553 22  4455555555555555552 22  44555555555555555432


Q ss_pred             hhhhccCCCCCceecCCCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPS  103 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~  103 (244)
                       +  +..+++|+.|+++.|.++
T Consensus       122 -~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          122 -D--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             -C--CTTCTTCCEEECTTSCCS
T ss_pred             -c--CCCCCcCCEEECCCCccc
Confidence             2  444444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=1.1e-15  Score=135.55  Aligned_cols=71  Identities=20%  Similarity=0.294  Sum_probs=37.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|++++. |  ++.+++|++|++++|.+++. +  +.++++|++|++++|.+++ +|  ++.+++|++|++++|++++
T Consensus        71 Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A           71 CTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             ccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            345555542 2  55556666666666665532 2  5555555555555555553 33  4555555555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=4.5e-18  Score=144.26  Aligned_cols=147  Identities=19%  Similarity=0.237  Sum_probs=102.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCccccc-CCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC-CC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGE-IPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DL   78 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l   78 (244)
                      +++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+
T Consensus        77 l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B           77 CPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             CTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             cCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            456777666554 55678888888888887754 6677777888888888888887677777777888888888888 56


Q ss_pred             CC-chhhhccCCCCCceecCCCC-CCCCC-CCcccCCCC-CCCeecCCCC--CCC-CCCccccCCCCceE-EEcccCC
Q 042227           79 SG-ELFVALQNCTAFTGFPEFIT-EPSGR-IPENIGSLQ-KLETLDLSSN--HLS-GPIPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus        79 ~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~L~~L~ls~N--~l~-~~~p~~l~~l~~L~-L~ls~N~  148 (244)
                      ++ .++..+..+++|+.|+++.| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+ |++++|.
T Consensus       156 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            65 35666777777888888777 66643 445556666 6777777776  343 23455555666666 6666666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2e-18  Score=156.94  Aligned_cols=109  Identities=24%  Similarity=0.247  Sum_probs=97.5

Q ss_pred             CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCC
Q 042227           43 ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS  122 (244)
Q Consensus        43 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  122 (244)
                      .|+.|++++|.++ .+|. ++.+++|+.|++++|+++ .+|..+..+++|+.|+++.|.+++ +| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            5889999999998 5776 899999999999999998 788899999999999999999996 67 79999999999999


Q ss_pred             CCCCCCCC-ccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          123 SNHLSGPI-PPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       123 ~N~l~~~~-p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      +|++++.. |..+..+++|+ |++++|++++.+|..
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            99999665 89999999999 999999999877754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=3.2e-18  Score=145.14  Aligned_cols=148  Identities=22%  Similarity=0.182  Sum_probs=113.3

Q ss_pred             CCCCcCCcc-CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCC-cCCc-cCCcccCCCCCCcEEEccCC-
Q 042227            1 LSRSLLNGT-IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN-SLSG-GIPASFCSLPSLVWLKLSKN-   76 (244)
Q Consensus         1 Ls~N~l~~~-ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~Ls~N-   76 (244)
                      |++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| 
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            456777655 7777788888888888888888777777888888888888888 6764 35666777888888888888 


Q ss_pred             CCCCc-hhhhccCCC-CCceecCCCC--CCC-CCCCcccCCCCCCCeecCCCCC-CCCCCccccCCCCceE-EEcccCC
Q 042227           77 DLSGE-LFVALQNCT-AFTGFPEFIT--EPS-GRIPENIGSLQKLETLDLSSNH-LSGPIPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus        77 ~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~-L~ls~N~  148 (244)
                      .+++. ++..+..++ +|+.|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+ |++++|.
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            77754 567777888 8888888888  444 3456666778888888888888 6666677777788888 8888885

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=1.2e-16  Score=141.64  Aligned_cols=42  Identities=14%  Similarity=0.022  Sum_probs=19.9

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEE   43 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~   43 (244)
                      +++|.+ |.+|+.++++++|++|++++|.+++.+|..++++.+
T Consensus        18 l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~   59 (454)
T 1jl5_A           18 RHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE   59 (454)
T ss_dssp             -----------------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred             cccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchh
Confidence            456777 788888888888888888888888777777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=1.6e-15  Score=116.80  Aligned_cols=110  Identities=22%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           20 FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        20 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      .+++++++|.++ .+|..+.  ++|++|++++|.|++..|..|..+++|++|++++|++++                   
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------   68 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------   68 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-------------------
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-------------------
Confidence            467777777777 4665543  677777777777776666777777777777777777763                   


Q ss_pred             CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                           ..+..|..+++|++|++++|++++..+..+..+++|+ |++++|++++.++..
T Consensus        69 -----l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           69 -----LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             -----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             -----cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence                 3344567888899999999999865566788888998 999999998887643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.63  E-value=6.3e-15  Score=130.51  Aligned_cols=112  Identities=23%  Similarity=0.272  Sum_probs=59.4

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|++++ +| .++++++|++|++++|++++ +|..+   .+|++|++++|.+++ +| .++.+++|++|++++|++++ 
T Consensus       139 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-  209 (454)
T 1jl5_A          139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-  209 (454)
T ss_dssp             CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-
T ss_pred             cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-
Confidence            4555553 44 35556666666666666553 34322   355555555555552 44 35556666666666665553 


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      +|..   .++|+.|+++.|.++ .+|+ ++.+++|++|++++|+++
T Consensus       210 l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          210 LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence            2221   134555555555555 4443 556666666666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=5.7e-19  Score=139.41  Aligned_cols=120  Identities=26%  Similarity=0.318  Sum_probs=62.5

Q ss_pred             CCcCCccCCc------CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC
Q 042227            3 RSLLNGTIPP------SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN   76 (244)
Q Consensus         3 ~N~l~~~ip~------~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N   76 (244)
                      .|.++|.+|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus        27 ~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             EEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred             eeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence            3444555444      45555556666666665553 44 5555555666666666555 45555555555566666666


Q ss_pred             CCCCchhhhccCCCCCceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCC
Q 042227           77 DLSGELFVALQNCTAFTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        77 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~  127 (244)
                      ++++ +| .+..+++|+.|+++.|.+++..+ ..+..+++|++|++++|+++
T Consensus       104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            5553 23 34455555555555555443111 23445555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=2.8e-15  Score=115.48  Aligned_cols=101  Identities=25%  Similarity=0.272  Sum_probs=85.5

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++ .+|..+.  ++|++|++++|+|++..|..|.++++|++|++++|+|++..+..|..+++|++|+|++|++++
T Consensus        16 ~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~   92 (170)
T 3g39_A           16 CSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS   92 (170)
T ss_dssp             CTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence            4678887 5787664  899999999999998878899999999999999999996666778999999999999999984


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG  128 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~  128 (244)
                      .                        .+..|..+++|++|++++|.++.
T Consensus        93 ~------------------------~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           93 I------------------------PRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             C------------------------CTTTTTTCTTCCEEECCSSCBCT
T ss_pred             e------------------------CHHHhcCCCCCCEEEeCCCCCCC
Confidence            2                        23357778888888888888874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=1.7e-17  Score=142.73  Aligned_cols=152  Identities=20%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCC----ccccCCC-CCCEEEccCCcCCccCCcccCCC-----CCCcE
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP----SNWEGLE-ELMVKDLSNNSLSGGIPASFCSL-----PSLVW   70 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~   70 (244)
                      |+.|.+++.+|..+...++|++|++++|.+++..+    +.+..++ +|++|++++|.+++..+..+..+     ++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            46777777777766666668888888888775544    5666677 77888888777775555555543     77777


Q ss_pred             EEccCCCCCCchhhhc----cCC-CCCceecCCCCCCCCCCCcc----cCC-CCCCCeecCCCCCCCCCCc----cccCC
Q 042227           71 LKLSKNDLSGELFVAL----QNC-TAFTGFPEFITEPSGRIPEN----IGS-LQKLETLDLSSNHLSGPIP----PSMSS  136 (244)
Q Consensus        71 L~Ls~N~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~p~~----~~~-l~~L~~L~ls~N~l~~~~p----~~l~~  136 (244)
                      |++++|++++..+..+    ..+ ++|+.|+++.|.+++..+..    +.. .++|++|++++|++++..+    ..+..
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA  164 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence            7777777765544433    333 66777777777766544332    222 2466666666666653222    22233


Q ss_pred             CC-ceE-EEcccCCCcCC
Q 042227          137 MT-RLS-LNLSYNDLTGP  152 (244)
Q Consensus       137 l~-~L~-L~ls~N~l~~~  152 (244)
                      ++ +|+ |++++|.+++.
T Consensus       165 ~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          165 IPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             SCTTCCEEECTTSCGGGS
T ss_pred             CCccccEeeecCCCCchh
Confidence            33 555 55555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=1.3e-15  Score=138.47  Aligned_cols=121  Identities=21%  Similarity=0.195  Sum_probs=106.3

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCC
Q 042227           19 NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEF   98 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~   98 (244)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999995 676 999999999999999999 899999999999999999999996 66 89999999999999


Q ss_pred             CCCCCCCC-CcccCCCCCCCeecCCCCCCCCCCccc---cCCCCceE-EEc
Q 042227           99 ITEPSGRI-PENIGSLQKLETLDLSSNHLSGPIPPS---MSSMTRLS-LNL  144 (244)
Q Consensus        99 ~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~---l~~l~~L~-L~l  144 (244)
                      .|.+++.. |..++.+++|+.|++++|++++..|..   +..+++|+ |++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999877 999999999999999999999544321   23367777 653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.61  E-value=2.8e-17  Score=142.28  Aligned_cols=41  Identities=20%  Similarity=0.132  Sum_probs=20.9

Q ss_pred             CCCCCccEEEccCCcccc----cCCccccCCCCCCEEEccCCcCC
Q 042227           15 SEMKNFSFLDLSNNILSG----EIPSNWEGLEELMVKDLSNNSLS   55 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~   55 (244)
                      ..+++|++|++++|.+++    .+|..+..+++|++|++++|.++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            445555555555555554    23444444555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=6.1e-15  Score=114.05  Aligned_cols=108  Identities=22%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT  100 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  100 (244)
                      +.+++++|+++ .+|..+.  ++|+.|++++|.+++..|..|..+++|++|+|++|++++                    
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence            67788888876 5666554  677888888888876667777777888888888877763                    


Q ss_pred             CCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227          101 EPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                          ..+..|..+++|++|++++|++++..+..+..+++|+ |++++|++.+.++.
T Consensus        72 ----i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           72 ----IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             ----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             ----cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence                2233467778888888888888854444578888888 88888888876653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=4.8e-15  Score=114.64  Aligned_cols=105  Identities=21%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             CEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227           45 MVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSN  124 (244)
Q Consensus        45 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N  124 (244)
                      +.+++++|.++ .+|..+.  ++|++|++++|++++                        ..|..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~Ls~N   67 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK------------------------LEPGVFDHLVNLQQLYFNSN   67 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc------------------------cCHHHhcCCcCCCEEECCCC
Confidence            57777777776 6666553  677777777777763                        45677889999999999999


Q ss_pred             CCCCCCccccCCCCceE-EEcccCCCcCCCCC-CcccccCCCCccccCCCCCCCC
Q 042227          125 HLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL-TKQFQTFNDPSIYMGNADLCSP  177 (244)
Q Consensus       125 ~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~-~~~~~~l~~~~~~~~n~~~c~~  177 (244)
                      ++++..+..|..+++|+ |++++|.+++..+. ...+..+.... +.+|+..|..
T Consensus        68 ~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~-L~~N~~~c~~  121 (174)
T 2r9u_A           68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY-LYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCBCTTB
T ss_pred             CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE-eCCCCccccc
Confidence            99965556678999999 99999999976654 34455666555 6778876654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.60  E-value=1.8e-17  Score=143.51  Aligned_cols=151  Identities=22%  Similarity=0.227  Sum_probs=98.6

Q ss_pred             CCCCcCCc----cCCcCCCCCCCccEEEccCCcccccCCcc----ccCC---------CCCCEEEccCCcCC-ccCC---
Q 042227            1 LSRSLLNG----TIPPSMSEMKNFSFLDLSNNILSGEIPSN----WEGL---------EELMVKDLSNNSLS-GGIP---   59 (244)
Q Consensus         1 Ls~N~l~~----~ip~~l~~l~~L~~L~l~~N~l~~~~p~~----~~~l---------~~L~~L~L~~n~l~-~~~p---   59 (244)
                      |++|.+++    .+|..+..+++|++|++++|.+++..+..    +..+         ++|++|++++|.++ +.++   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            46777776    36666777788888888888876433332    2233         67777777777776 3344   


Q ss_pred             cccCCCCCCcEEEccCCCCCC-----chhhhccCCCCCceecCCCCCCC----CCCCcccCCCCCCCeecCCCCCCCCC-
Q 042227           60 ASFCSLPSLVWLKLSKNDLSG-----ELFVALQNCTAFTGFPEFITEPS----GRIPENIGSLQKLETLDLSSNHLSGP-  129 (244)
Q Consensus        60 ~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~ls~N~l~~~-  129 (244)
                      ..+..+++|++|++++|+++.     ..+..+..+++|+.|+++.|.++    ..+|..+..+++|++|++++|++++. 
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            355566777777777777762     23336667777777777777764    44566666777777777777777643 


Q ss_pred             ---CccccC--CCCceE-EEcccCCCcC
Q 042227          130 ---IPPSMS--SMTRLS-LNLSYNDLTG  151 (244)
Q Consensus       130 ---~p~~l~--~l~~L~-L~ls~N~l~~  151 (244)
                         ++..+.  .+++|+ |++++|.+++
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence               344442  366777 7777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=4.4e-15  Score=127.00  Aligned_cols=148  Identities=18%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCC-ccccCCCCCCE-EEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIP-SNWEGLEELMV-KDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      ++|+|+..-+..|.++++|++|+|++|++.+.+| ..|.++++++. +.+++|+++...|+.|..+++|++|++++|+++
T Consensus        38 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           38 VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence            4555553333345556666666666665543333 34555555543 344455555444555566666666666666555


Q ss_pred             CchhhhccCCC--------------------------CCceecCCCCCCCCCCCcccCCCCCCCeecCCC-CCCCCCCc-
Q 042227           80 GELFVALQNCT--------------------------AFTGFPEFITEPSGRIPENIGSLQKLETLDLSS-NHLSGPIP-  131 (244)
Q Consensus        80 ~~~~~~l~~l~--------------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p-  131 (244)
                      ...+..+....                          .++.|+++.|.++. +|.......+|+++++++ |.++ .+| 
T Consensus       118 ~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~  195 (350)
T 4ay9_X          118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPN  195 (350)
T ss_dssp             SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred             cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCH
Confidence            32222221111                          23334444444442 233233334455555543 4444 333 


Q ss_pred             cccCCCCceE-EEcccCCCcC
Q 042227          132 PSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus       132 ~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      ..|..+++|+ ||+++|+++.
T Consensus       196 ~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          196 DVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             TTTTTEECCSEEECTTSCCCC
T ss_pred             HHhccCcccchhhcCCCCcCc
Confidence            3456666666 6666666663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=1.2e-14  Score=133.26  Aligned_cols=80  Identities=21%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             CCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEc
Q 042227           66 PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNL  144 (244)
Q Consensus        66 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~l  144 (244)
                      ++|+.|++++|++++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+ |++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            345555555555543 22   33455555555555555 2333   3456666666666666 5566666666666 666


Q ss_pred             ccCCCcCCCC
Q 042227          145 SYNDLTGPIP  154 (244)
Q Consensus       145 s~N~l~~~~p  154 (244)
                      ++|++++.+|
T Consensus       292 ~~N~l~~~~~  301 (622)
T 3g06_A          292 EGNPLSERTL  301 (622)
T ss_dssp             CSCCCCHHHH
T ss_pred             cCCCCCCcCH
Confidence            6666665444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=3.1e-15  Score=115.62  Aligned_cols=121  Identities=21%  Similarity=0.174  Sum_probs=102.5

Q ss_pred             CCCCcCCccCCcCCCCCC-CccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMK-NFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      |++|.++ .+|. +..+. +|++|++++|.+++.  +.+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus        26 l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           26 LRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             CTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             eeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence            5788888 4554 44544 999999999999964  67899999999999999999554455689999999999999997


Q ss_pred             Cchhh--hccCCCCCceecCCCCCCCCCCCcc----cCCCCCCCeecCCCCCCC
Q 042227           80 GELFV--ALQNCTAFTGFPEFITEPSGRIPEN----IGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        80 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~ls~N~l~  127 (244)
                       .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||+++|.+.
T Consensus       102 -~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          102 -ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             -CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             -cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence             4555  8999999999999999998 45654    889999999999999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.57  E-value=5.7e-17  Score=139.34  Aligned_cols=151  Identities=20%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             CCCCcCCccCC----cCCCCCC-CccEEEccCCcccccCCccccCC-----CCCCEEEccCCcCCccCCcc----cCCC-
Q 042227            1 LSRSLLNGTIP----PSMSEMK-NFSFLDLSNNILSGEIPSNWEGL-----EELMVKDLSNNSLSGGIPAS----FCSL-   65 (244)
Q Consensus         1 Ls~N~l~~~ip----~~l~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~----~~~l-   65 (244)
                      |++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..    +..+ 
T Consensus        29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~  108 (362)
T 3goz_A           29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP  108 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence            46677765554    5566666 77777777777776555555543     77777777777776544443    3333 


Q ss_pred             CCCcEEEccCCCCCCchhhhc----cC-CCCCceecCCCCCCCCCC----CcccCCCC-CCCeecCCCCCCCCCCcccc-
Q 042227           66 PSLVWLKLSKNDLSGELFVAL----QN-CTAFTGFPEFITEPSGRI----PENIGSLQ-KLETLDLSSNHLSGPIPPSM-  134 (244)
Q Consensus        66 ~~L~~L~Ls~N~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----p~~~~~l~-~L~~L~ls~N~l~~~~p~~l-  134 (244)
                      ++|++|++++|++++..+..+    .. .++|+.|+++.|.+++..    +..+..++ +|++|++++|++++..+..+ 
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  188 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA  188 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence            677777777777765444333    23 246777777777666432    22233343 66666666666664444332 


Q ss_pred             ---CCC-CceE-EEcccCCCcC
Q 042227          135 ---SSM-TRLS-LNLSYNDLTG  151 (244)
Q Consensus       135 ---~~l-~~L~-L~ls~N~l~~  151 (244)
                         ... ++|+ |++++|.+++
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCCCEEECCCCCCCh
Confidence               223 3666 6666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=8.3e-15  Score=125.32  Aligned_cols=149  Identities=23%  Similarity=0.120  Sum_probs=108.6

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcE-EEccCCCCCC
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVW-LKLSKNDLSG   80 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~   80 (244)
                      +|+++ .+|..+  .+++++|+|++|+|+...++.|.++++|++|+|++|.+.+.+| ..|.+++++++ +.++.|+++.
T Consensus        18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence            56676 678766  3689999999999995555689999999999999999876665 57889998875 6677899998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCccc-------------------------CCC-CCCCeecCCCCCCCCCCcccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENI-------------------------GSL-QKLETLDLSSNHLSGPIPPSM  134 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-------------------------~~l-~~L~~L~ls~N~l~~~~p~~l  134 (244)
                      ..|..+..+++|+.|+++.|.+....+..+                         ..+ ..++.|++++|+++ .++...
T Consensus        95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~  173 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA  173 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS
T ss_pred             cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh
Confidence            888999999999999999988764333222                         222 24566777777776 455444


Q ss_pred             CCCCceE-EEcccCCCcCCCCC
Q 042227          135 SSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       135 ~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      ....+|+ +++++|+..+.+|.
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCCT
T ss_pred             ccccchhHHhhccCCcccCCCH
Confidence            4455666 77765443345554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=1.3e-13  Score=126.45  Aligned_cols=88  Identities=24%  Similarity=0.311  Sum_probs=54.3

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|++++
T Consensus        47 ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           47 VGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred             ecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence            4567776 6666554  67777777777777 4554   4567777777777776 4554   45666777777776664


Q ss_pred             chhhhccCCCCCceecCCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPS  103 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~  103 (244)
                       +|.   .+++|+.|+++.|+++
T Consensus       116 -l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A          116 -LPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             -CCC---CCTTCCEEECCSSCCS
T ss_pred             -CCC---CCCCcCEEECCCCCCC
Confidence             222   3344455555554444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.6e-17  Score=130.97  Aligned_cols=135  Identities=20%  Similarity=0.212  Sum_probs=117.5

Q ss_pred             CCCCCccEEEccCCcccccCCc------cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccC
Q 042227           15 SEMKNFSFLDLSNNILSGEIPS------NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQN   88 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~   88 (244)
                      .....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3456777788888888877776      89999999999999999994 77 8889999999999999998 67888888


Q ss_pred             CCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCc--cccCCCCceE-EEcccCCCcCCCCC
Q 042227           89 CTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIP--PSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus        89 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      +++|+.|+++.|.+++ +| .+..+++|++|++++|++++ ++  ..+..+++|+ +++++|++++.+|.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            8999999999999986 45 58889999999999999994 44  4788999999 99999999887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=2.4e-13  Score=115.74  Aligned_cols=103  Identities=19%  Similarity=0.102  Sum_probs=60.8

Q ss_pred             EEEccCC-cccccCCccccCCCCCCEEEccC-CcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           22 FLDLSNN-ILSGEIPSNWEGLEELMVKDLSN-NSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        22 ~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      .++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+++.
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3466665 666 4555 66666666666664 666644445666666666666666666655555555555555555555


Q ss_pred             CCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227          100 TEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      |.+++..+..+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555543333344443 666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=1.5e-13  Score=117.01  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             CEEEccCC-cCCccCCcccCCCCCCcEEEccC-CCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCC
Q 042227           45 MVKDLSNN-SLSGGIPASFCSLPSLVWLKLSK-NDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLS  122 (244)
Q Consensus        45 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls  122 (244)
                      ..++.+++ +++ .+|. +..+++|+.|+|++ |++++..+..|..+++|+.|+++.|.+++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45688888 898 6888 99999999999996 99998888999999999999999999999888899999999999999


Q ss_pred             CCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227          123 SNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus       123 ~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      +|+|++..+..+..++ |+ |++.+|++.+.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence            9999965555666666 99 999999999877643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.46  E-value=7.2e-16  Score=135.96  Aligned_cols=151  Identities=16%  Similarity=0.067  Sum_probs=104.7

Q ss_pred             CCCCcCCcc----CCcCCCCCCCccEEEccCCcccccC-----CccccCCCCCCEEEccCCcCCcc----CCcccCCCCC
Q 042227            1 LSRSLLNGT----IPPSMSEMKNFSFLDLSNNILSGEI-----PSNWEGLEELMVKDLSNNSLSGG----IPASFCSLPS   67 (244)
Q Consensus         1 Ls~N~l~~~----ip~~l~~l~~L~~L~l~~N~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~   67 (244)
                      |++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|+.|++++|.+++.    ++..+..+++
T Consensus       206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  285 (461)
T 1z7x_W          206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES  285 (461)
T ss_dssp             CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred             ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence            467777653    5666777888899999998887532     22233578888888888888743    5667777888


Q ss_pred             CcEEEccCCCCCCchhhhccC-----CCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCCCccccCC--
Q 042227           68 LVWLKLSKNDLSGELFVALQN-----CTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGPIPPSMSS--  136 (244)
Q Consensus        68 L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~--  136 (244)
                      |++|++++|.+++..+..+..     .++|+.|+++.|.+++.    ++..+..+++|++|++++|++++..+..+..  
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  365 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  365 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence            888888888886544443333     25788888888887754    4555666778888888888776443333332  


Q ss_pred             ---CCceE-EEcccCCCcC
Q 042227          137 ---MTRLS-LNLSYNDLTG  151 (244)
Q Consensus       137 ---l~~L~-L~ls~N~l~~  151 (244)
                         .+.|+ |++++|.+++
T Consensus       366 ~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCH
T ss_pred             cCCCCceEEEECCCCCCCh
Confidence               56777 8888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.43  E-value=1.6e-15  Score=133.66  Aligned_cols=152  Identities=15%  Similarity=0.081  Sum_probs=113.7

Q ss_pred             CCCCcCCccCCcCCC-----CCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCCccC-----CcccCCCC
Q 042227            1 LSRSLLNGTIPPSMS-----EMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLSGGI-----PASFCSLP   66 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~   66 (244)
                      |++|.+++..+..+.     .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..++
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~  256 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS  256 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence            456776644333332     356899999999999863    4667778899999999999887432     33344688


Q ss_pred             CCcEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCCCCcccC-----CCCCCCeecCCCCCCCCC----Cccc
Q 042227           67 SLVWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGRIPENIG-----SLQKLETLDLSSNHLSGP----IPPS  133 (244)
Q Consensus        67 ~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~  133 (244)
                      +|++|++++|++++.    ++..+..+++|+.|+++.|.+++..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            999999999999864    677788899999999999987654333222     336899999999999854    4566


Q ss_pred             cCCCCceE-EEcccCCCcCC
Q 042227          134 MSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus       134 l~~l~~L~-L~ls~N~l~~~  152 (244)
                      +..+++|+ +++++|.+++.
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHH
T ss_pred             HhhCCCccEEEccCCccccc
Confidence            77788999 99999988754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.6e-14  Score=123.46  Aligned_cols=133  Identities=18%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             CCccEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCccCCccc-----CCCCCCcEEEccCCCCCC----chhhhcc
Q 042227           18 KNFSFLDLSNNILSGEIPSN-WEGLEELMVKDLSNNSLSGGIPASF-----CSLPSLVWLKLSKNDLSG----ELFVALQ   87 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~~~~l~   87 (244)
                      ++|++|+|++|.++...... ...+++|+.|+|++|.++......+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            57777777777776432222 2234567777777777763322222     235677777777777754    2444556


Q ss_pred             CCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           88 NCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        88 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      .+++|+.|+++.|.++..    ++..+...++|++|++++|.+++.    ++..+...+.|+ |++++|.++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            677777777777776542    234455666777777777777632    233344556777 777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=5.3e-11  Score=100.68  Aligned_cols=85  Identities=14%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             CCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCC-eecCCCCCCCCCCccccCCCCceE-E
Q 042227           65 LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLE-TLDLSSNHLSGPIPPSMSSMTRLS-L  142 (244)
Q Consensus        65 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~-L  142 (244)
                      +++|+.+++++|+++...+.+|..+.+|+.+.+..| +...-+..|.++.+|+ .+++.+ .++..-+..|.++++|+ +
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            578888888888888666678888999999988887 6655556788899998 999888 67645567888899999 9


Q ss_pred             EcccCCCcC
Q 042227          143 NLSYNDLTG  151 (244)
Q Consensus       143 ~ls~N~l~~  151 (244)
                      ++++|.++.
T Consensus       303 ~l~~n~i~~  311 (329)
T 3sb4_A          303 LATGDKITT  311 (329)
T ss_dssp             EECSSCCCE
T ss_pred             EeCCCccCc
Confidence            988888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=1.1e-10  Score=98.64  Aligned_cols=102  Identities=12%  Similarity=0.043  Sum_probs=88.2

Q ss_pred             CCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc-eecCCCCCCCCCCCcccCCCCCCCee
Q 042227           41 LEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT-GFPEFITEPSGRIPENIGSLQKLETL  119 (244)
Q Consensus        41 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L  119 (244)
                      +++|+.+++++|+++...+..|.++++|+.+++.+| ++...+.+|..+.+|+ .+.+.. .++..-+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998555578999999999999998 7767778899999999 999887 6665556889999999999


Q ss_pred             cCCCCCCCCCCccccCCCCceE-EEc
Q 042227          120 DLSSNHLSGPIPPSMSSMTRLS-LNL  144 (244)
Q Consensus       120 ~ls~N~l~~~~p~~l~~l~~L~-L~l  144 (244)
                      ++++|.++...+..|.++++|+ +..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999966667899999998 753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.05  E-value=7.8e-12  Score=113.42  Aligned_cols=138  Identities=10%  Similarity=0.058  Sum_probs=96.2

Q ss_pred             CCCCCccEEEccCCcccccCCccccC-CCCCCEEEcc----CCcCCcc-----CCcccCCCCCCcEEEccCC--CCCCch
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEG-LEELMVKDLS----NNSLSGG-----IPASFCSLPSLVWLKLSKN--DLSGEL   82 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N--~l~~~~   82 (244)
                      ..+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++|+++++  .+++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            34677788888777777655555544 7788888885    5666642     3334566788888888743  366555


Q ss_pred             hhhccC-CCCCceecCCCCCCCC-CCCcccCCCCCCCeecCCCCCCCCC-CccccCCCCceE-EEcccCCCcCC
Q 042227           83 FVALQN-CTAFTGFPEFITEPSG-RIPENIGSLQKLETLDLSSNHLSGP-IPPSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus        83 ~~~l~~-l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      +..+.. +++|+.|+++.|.+++ .++..+..+++|++|++++|.+++. ++.....+++|+ |++++|+++..
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            555443 7888888888888775 3445567788899999999988643 334445678888 99999988754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=2.6e-12  Score=110.90  Aligned_cols=135  Identities=16%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             CCCccEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCCccCCcc-cCCCCCCcEEEccCCCCCCchhhhc----
Q 042227           17 MKNFSFLDLSNNILSGEIPSNWE-----GLEELMVKDLSNNSLSGGIPAS-FCSLPSLVWLKLSKNDLSGELFVAL----   86 (244)
Q Consensus        17 l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~l----   86 (244)
                      ++.|+.|++++|.++......+.     ..++|+.|+|++|.++...... ...+++|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46789999999999854333332     2379999999999997432222 2345689999999999986544444    


Q ss_pred             -cCCCCCceecCCCCCCCC----CCCcccCCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCcC
Q 042227           87 -QNCTAFTGFPEFITEPSG----RIPENIGSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        87 -~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                       ...++|+.|+++.|.++.    .++..+..+++|++|++++|.+++.    ++..+...+.|+ |++++|.++.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence             346889999999999864    2444557789999999999999742    355677788999 9999999974

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.02  E-value=1.2e-10  Score=105.55  Aligned_cols=133  Identities=16%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             CCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCC----ccCCcccCCCCCCcEEEccCCCCCCchhhhcc
Q 042227           16 EMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLS----GGIPASFCSLPSLVWLKLSKNDLSGELFVALQ   87 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~   87 (244)
                      .+++|++|++++|.+++.    ++.....+++|+.|++++|.++    +.++..+..+++|++|++++|.+.+ ++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            455666666666665543    2223344566666666666654    2333344455666666666666553 455566


Q ss_pred             CCCCCceecCCCCCCC---CCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           88 NCTAFTGFPEFITEPS---GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        88 ~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      .+++|+.|.++.....   +..+..+..+++|+.|+++++... .+|..+..+++|+ |++++|.++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence            6666666655432111   122233445555555555554333 4555566666666 677666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.83  E-value=3.4e-11  Score=109.20  Aligned_cols=133  Identities=12%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             CCCccEEEccCCcccccCCcccc-CCCCCCEEEcc--C----CcCCc-----cCCcccCCCCCCcEEEccCCCCCCchhh
Q 042227           17 MKNFSFLDLSNNILSGEIPSNWE-GLEELMVKDLS--N----NSLSG-----GIPASFCSLPSLVWLKLSKNDLSGELFV   84 (244)
Q Consensus        17 l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~   84 (244)
                      +++|++|+++.|.+++.....+. .+++|+.|+++  +    +.+++     .++..+..+++|+.|++++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            67788888877877765444443 47888888888  3    45551     1222356678888888876 66666666


Q ss_pred             hccC-CCCCceecCCCCCCCCCCCccc-CCCCCCCeecCCCCCCCCCCcc-ccCCCCceE-EEcccCCCc
Q 042227           85 ALQN-CTAFTGFPEFITEPSGRIPENI-GSLQKLETLDLSSNHLSGPIPP-SMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        85 ~l~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~l~~l~~L~-L~ls~N~l~  150 (244)
                      .+.. +++|+.|+++.|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+ |++++|+++
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            6665 8888899888888765444333 5688899999999988643333 344578888 999998874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=6.4e-10  Score=86.46  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=52.5

Q ss_pred             cCCCCCCEEEccCC-cCCc----cCCcccCCCCCCcEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCC----
Q 042227           39 EGLEELMVKDLSNN-SLSG----GIPASFCSLPSLVWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGR----  105 (244)
Q Consensus        39 ~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----  105 (244)
                      ...+.|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...++|+.|+++.|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            33444444444444 4431    1223333444455555555544421    223333344455555555544421    


Q ss_pred             CCcccCCCCCCCeecC--CCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227          106 IPENIGSLQKLETLDL--SSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus       106 ~p~~~~~l~~L~~L~l--s~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      +...+...++|++|++  ++|.++..    +...+...+.|+ |++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2334455556666666  55666532    223344445666 666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.74  E-value=5e-10  Score=101.47  Aligned_cols=61  Identities=25%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             CCCccEEEccCC-ccccc-CCccccCCCCCCEEEccCCcCCccCCcc----cCCCCCCcEEEccCCC
Q 042227           17 MKNFSFLDLSNN-ILSGE-IPSNWEGLEELMVKDLSNNSLSGGIPAS----FCSLPSLVWLKLSKND   77 (244)
Q Consensus        17 l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~   77 (244)
                      +++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..    ...+++|+.|++++|.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            455555555555 33321 2222334555555555555544322222    2244455555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.8e-09  Score=83.87  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=92.5

Q ss_pred             CCCCCCCccEEEccCC-ccccc----CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCCc--
Q 042227           13 SMSEMKNFSFLDLSNN-ILSGE----IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSGE--   81 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~--   81 (244)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+..    .+.+.+...++|++|+|++|.++..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3566889999999999 88752    34556778999999999999974    2445566678999999999999863  


Q ss_pred             --hhhhccCCCCCceecC--CCCCCCCC----CCcccCCCCCCCeecCCCCCCC
Q 042227           82 --LFVALQNCTAFTGFPE--FITEPSGR----IPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        82 --~~~~l~~l~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                        +...+...++|+.|++  +.|.+...    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              5678888999999999  88988753    3345566789999999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=1.4e-07  Score=81.99  Aligned_cols=140  Identities=12%  Similarity=0.113  Sum_probs=92.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|+++..-...|. ..+|+.+.+..+ ++......|.++++|+.+++..+ ++..-...|.+ .+|+.+.+ .+.++..
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence            45566533333444 578888888754 66455677888888888888765 44333455655 67888888 3446555


Q ss_pred             hhhhccCCCCCceecCCCCCCC-----CCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccC
Q 042227           82 LFVALQNCTAFTGFPEFITEPS-----GRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYN  147 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N  147 (244)
                      ...+|..+++|+.+.+..+.+.     ...+..|.++++|+.+++.+ .++..-...|.++.+|+ +++..|
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            5677888888888877766543     22345677788888888874 46644456777777887 777554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=1.9e-09  Score=88.58  Aligned_cols=41  Identities=34%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CCCCCCEEEccCCcCCc--cCCcccCCCCCCcEEEccCCCCCC
Q 042227           40 GLEELMVKDLSNNSLSG--GIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus        40 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            45566666666666664  333444556666666666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.63  E-value=1.9e-07  Score=81.09  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .|.++++|+.+++.+|.++......|. ..+|+.+.+..+ ++..-...|.++++|+.+++..| ++..-..+|.. .+|
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            444555555555555555522222333 355555555533 43233345555566666666543 33333344444 455


Q ss_pred             ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC-----CCCccccCCCCceE-EEcccC
Q 042227           93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS-----GPIPPSMSSMTRLS-LNLSYN  147 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~l~~l~~L~-L~ls~N  147 (244)
                      +.+.+ .+.++..-...|.++++|+.+++.+|.+.     ...+..|.++++|+ +++..+
T Consensus       251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~  310 (401)
T 4fdw_A          251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES  310 (401)
T ss_dssp             SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred             cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence            55555 23344334567899999999999998775     24466899999999 999853

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=3.5e-09  Score=90.88  Aligned_cols=135  Identities=10%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             CCCCCCccEEEccCCccc---------ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhh
Q 042227           14 MSEMKNFSFLDLSNNILS---------GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFV   84 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~   84 (244)
                      +..+++|+.|.+.++...         +.+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            344566666666554321         112233455667777777666311 2332 2 256777777776666544334


Q ss_pred             hcc--CCCCCceecCCCC--CCCCC-----CCccc--CCCCCCCeecCCCCCCCCCCccccC---CCCceE-EEcccCCC
Q 042227           85 ALQ--NCTAFTGFPEFIT--EPSGR-----IPENI--GSLQKLETLDLSSNHLSGPIPPSMS---SMTRLS-LNLSYNDL  149 (244)
Q Consensus        85 ~l~--~l~~L~~L~l~~n--~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~~~~p~~l~---~l~~L~-L~ls~N~l  149 (244)
                      .+.  .+++|+.|.+..+  ...+.     +...+  ..+++|++|++++|.+++..+..+.   .+++|+ |++++|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            443  5667777665421  11111     11112  2356777777777666532222222   356666 77777766


Q ss_pred             cC
Q 042227          150 TG  151 (244)
Q Consensus       150 ~~  151 (244)
                      .+
T Consensus       292 ~d  293 (362)
T 2ra8_A          292 TD  293 (362)
T ss_dssp             BH
T ss_pred             Ch
Confidence            54

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=5.9e-08  Score=79.60  Aligned_cols=67  Identities=25%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CCCCCccEEEccCCcccc--cCCccccCCCCCCEEEccCCcCCccCCcccCCCC--CCcEEEccCCCCCCchh
Q 042227           15 SEMKNFSFLDLSNNILSG--EIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLP--SLVWLKLSKNDLSGELF   83 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~   83 (244)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            457899999999999997  4567777899999999999999853  2344444  89999999999986443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.33  E-value=2.3e-07  Score=79.51  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             CCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccC--CCCCCcEEEccC--CCCCCc----
Q 042227           10 IPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC--SLPSLVWLKLSK--NDLSGE----   81 (244)
Q Consensus        10 ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~----   81 (244)
                      ++..+..+++|+.|++++|.-. .++. +. +++|+.|++..+.++......+.  .+++|+.|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3344566799999999998412 2343 33 79999999999988743333343  689999999863  222211    


Q ss_pred             -hhhhc--cCCCCCceecCCCCCCCCCCCccc---CCCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           82 -LFVAL--QNCTAFTGFPEFITEPSGRIPENI---GSLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        82 -~~~~l--~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                       +...+  ..+++|+.|.+..|.+.+..+..+   ..+++|++|+++.|.+++.    ++..+..+++|+ |++++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11222  357899999999988764332222   3578999999999999853    344445678999 999999876


Q ss_pred             C
Q 042227          151 G  151 (244)
Q Consensus       151 ~  151 (244)
                      .
T Consensus       321 d  321 (362)
T 2ra8_A          321 D  321 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=2.4e-06  Score=65.44  Aligned_cols=85  Identities=11%  Similarity=0.051  Sum_probs=39.9

Q ss_pred             CCCEEEccCCcCCccCCcccCCCCCCcEEEccCCC-CCCchhhhccCC----CCCceecCCCCC-CCCCCCcccCCCCCC
Q 042227           43 ELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKND-LSGELFVALQNC----TAFTGFPEFITE-PSGRIPENIGSLQKL  116 (244)
Q Consensus        43 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~L  116 (244)
                      +|+.||++++.++..--..+..+++|+.|+|+++. +++.--..+..+    ++|+.|+++.|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34455555544443222333444555555555542 443323333332    245555555442 333222335566777


Q ss_pred             CeecCCCCC-CC
Q 042227          117 ETLDLSSNH-LS  127 (244)
Q Consensus       117 ~~L~ls~N~-l~  127 (244)
                      ++|+++++. ++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            777777764 44

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.89  E-value=3.7e-05  Score=66.21  Aligned_cols=110  Identities=13%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCC
Q 042227           35 PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ  114 (244)
Q Consensus        35 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~  114 (244)
                      ...|.++..|+.+.+..+..+ .-...|.++++|+.+.+. +.++.....+|..+.+|+.+.+..+ ++..-...|.++.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            445666666666666554433 334456666666666664 3344344455666666666665432 3322234566777


Q ss_pred             CCCeecCCCCCCCCCCccccCCCCceE-EEcccCC
Q 042227          115 KLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus       115 ~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~  148 (244)
                      +|+.+.+..+ ++..-..+|.++.+|+ +++.++.
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            7777777544 4433345677777777 7776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=4.2e-06  Score=64.10  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=51.7

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCc-CCccCCcccCCC----CCCcEEEccCCC-CCCchhhhccCCCC
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNS-LSGGIPASFCSL----PSLVWLKLSKND-LSGELFVALQNCTA   91 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~   91 (244)
                      ..|+.||++++.++..--..+.++++|+.|+|++|. +++.--..+..+    ++|++|+++++. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777665444455667777777777764 553222233333    357777777763 66544455666777


Q ss_pred             CceecCCCCC
Q 042227           92 FTGFPEFITE  101 (244)
Q Consensus        92 L~~L~l~~n~  101 (244)
                      |+.|+++.+.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.74  E-value=0.00021  Score=61.39  Aligned_cols=126  Identities=13%  Similarity=0.054  Sum_probs=69.6

Q ss_pred             CCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCce
Q 042227           15 SEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTG   94 (244)
Q Consensus        15 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~   94 (244)
                      .++..|+.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+.+.+..+ ++..-..+|..+.+|+.
T Consensus       250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            33444444444444332 3334444555555554444332   1234556667777776544 44444566777777777


Q ss_pred             ecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccC
Q 042227           95 FPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYN  147 (244)
Q Consensus        95 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N  147 (244)
                      +.+..+ ++..-..+|.++.+|+.+++..| ++..-..+|.++.+|+ +++..+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            766432 33233455777777777777665 5534455677777777 776544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.70  E-value=0.00022  Score=60.85  Aligned_cols=128  Identities=13%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +.....|+.+.+..+ ++......|.++..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......+..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            344455566555544 22233445556666666666554 33233445566666666666443 3333344566666666


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcc
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLS  145 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls  145 (244)
                      .+.+..+.++..-...|.++.+|+.+++..+ ++..-..+|.++.+|+ +.+.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            6666555554333445666666666666543 4423334566666665 5543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.68  E-value=1e-05  Score=63.16  Aligned_cols=109  Identities=10%  Similarity=0.137  Sum_probs=52.5

Q ss_pred             CCCCCEEEccCC-cCCc----cCCcccCCCCCCcEEEccCCCCCC----chhhhccCCCCCceecCCCCCCCCC----CC
Q 042227           41 LEELMVKDLSNN-SLSG----GIPASFCSLPSLVWLKLSKNDLSG----ELFVALQNCTAFTGFPEFITEPSGR----IP  107 (244)
Q Consensus        41 l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p  107 (244)
                      -+.|+.|+|++| .|..    .+.+.+..-+.|+.|+|++|++..    .+...+..-+.|+.|+++.|.+...    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            344555555543 4431    123334444455555555555542    2333344445555555555554421    22


Q ss_pred             cccCCCCCCCeecCCCCC---CCC----CCccccCCCCceE-EEcccCCC
Q 042227          108 ENIGSLQKLETLDLSSNH---LSG----PIPPSMSSMTRLS-LNLSYNDL  149 (244)
Q Consensus       108 ~~~~~l~~L~~L~ls~N~---l~~----~~p~~l~~l~~L~-L~ls~N~l  149 (244)
                      +.+..-+.|++|+|++|.   +..    .+...+..-+.|+ ++++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            344555667777776542   221    1233444456666 77766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.65  E-value=0.00033  Score=59.70  Aligned_cols=123  Identities=7%  Similarity=0.004  Sum_probs=92.0

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      ..+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...|..+++|+.+.+.++.++..-..+|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            45677889999999876 55455678889999999999765 55344567889999999999999888667788999999


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCC
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMT  138 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  138 (244)
                      |+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            999988643 44333457899999999988654 4422334455443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.53  E-value=0.00042  Score=59.51  Aligned_cols=122  Identities=13%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      ..+..+..++.+....+.+.   ...|..+.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++.+
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            45677888888888776543   346788999999999765 55344567889999999999754 66566788999999


Q ss_pred             CceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           92 FTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                      |+.+.+..+ ++..-..+|.++.+|+.+++..+ ++ .+...|.++++|+
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            999988765 55344567999999999999765 33 3456788888876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.52  E-value=0.00074  Score=57.99  Aligned_cols=107  Identities=10%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      |.++..|+.+.+.++..+ .....|.++..|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-..+|..+.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            344444555554443322 3333444455555555532 233122234444555555555432 3323334455555555


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCC
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSN  124 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N  124 (244)
                      .+.+..+ ++..-...|.++.+|+.+++.++
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            5444322 22122234455555555555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.44  E-value=2.8e-05  Score=60.63  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             CCCCCccEEEccCC-ccccc----CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCCc----
Q 042227           15 SEMKNFSFLDLSNN-ILSGE----IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSGE----   81 (244)
Q Consensus        15 ~~l~~L~~L~l~~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----   81 (244)
                      .+-+.|+.|+|++| .|...    +-+.+..-+.|+.|+|++|.|..    .+.+.+..-+.|+.|+|+.|.|+..    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44578999999985 77642    33456666889999999999873    3344555667899999999999853    


Q ss_pred             hhhhccCCCCCceecCCCCC---CCC----CCCcccCCCCCCCeecCCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITE---PSG----RIPENIGSLQKLETLDLSSNHL  126 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~---l~~----~~p~~~~~l~~L~~L~ls~N~l  126 (244)
                      +.+.+..-+.|+.|+++.+.   +..    .+.+.+..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            45567777789999997653   222    1334455667889999887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.32  E-value=0.00043  Score=50.16  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             cEEEccCCccc-ccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCC
Q 042227           21 SFLDLSNNILS-GEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLS   79 (244)
Q Consensus        21 ~~L~l~~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   79 (244)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888876 34565443  46888888888888444566778888888888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00054  Score=49.61  Aligned_cols=48  Identities=19%  Similarity=0.138  Sum_probs=38.9

Q ss_pred             CCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccccc
Q 042227          114 QKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQT  161 (244)
Q Consensus       114 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~  161 (244)
                      ++|++|+|++|+|+...+..|..+++|+ |++++|++.+.+...+...+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w   79 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW   79 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHH
Confidence            4799999999999965566788899999 99999999988765443333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.23  E-value=0.28  Score=27.93  Aligned_cols=18  Identities=11%  Similarity=-0.130  Sum_probs=7.4

Q ss_pred             hHHHHHHHHHHHhcccHH
Q 042227          214 TRIHYWILDFLWSFENQK  231 (244)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~  231 (244)
                      +++.+.+++.+|+|.|||
T Consensus        20 v~~v~ii~~~~~~~~RRR   37 (44)
T 2l2t_A           20 LFILVIVGLTFAVYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            333333334444444443

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=81.43  E-value=0.54  Score=26.76  Aligned_cols=18  Identities=6%  Similarity=-0.114  Sum_probs=7.0

Q ss_pred             hHHHHHHHHHHHhcccHH
Q 042227          214 TRIHYWILDFLWSFENQK  231 (244)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~  231 (244)
                      +++.+.+++.+|+|.|||
T Consensus        21 v~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           21 LLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            333333333334444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 6e-13
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 6/176 (3%)

Query: 11  PPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMV-KDLSNNSLSGGIPASFCSLPSLV 69
           PPS+S + N   +    N +SG IP ++    +L     +S N L+G IP +F +L    
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 70  WLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGP 129
                         +   +           +         +        LDL +N + G 
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGT 259

Query: 130 IPPSMSSMTRL-SLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTTKCS 184
           +P  ++ +  L SLN+S+N+L G IP     Q F D S Y  N  LC  PL   C+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF-DVSAYANNKCLCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 8e-09
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + + GT+P  ++++K    L++S N L GEIP     L+   V   +NN    G P 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCGSPL 309

Query: 61  SFCS 64
             C+
Sbjct: 310 PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 23  LDLSNNILSG--EIPSNWEGLEELMVKDLSNN-SLSGGIPASFCSLPSLVWLKLSKNDLS 79
           LDLS   L     IPS+   L  L    +    +L G IP +   L  L +L ++  ++S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 80  GELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTR 139
           G +   L                SG +P +I SL  L  +    N +SG IP S  S ++
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 140 L 140
           L
Sbjct: 175 L 175

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 11/150 (7%)

Query: 9   TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSL 68
               +++ + N + LDL+NN +S   P    GL +L    L  N +S   P +  +  + 
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 69  VWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSG 128
           + L  ++ +    +            F              + SL KL+ L  ++N +S 
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSD 343

Query: 129 PIPPSMSSMTRL-SLNLSYNDLTGPIPLTK 157
               S++++T +  L+  +N ++   PL  
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTPLAN 371

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 3/154 (1%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L  + +          +KN   L L NN +S   P  +  L +L    LS N L      
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
              +L  L   +     +   +F  L            +   SG        ++KL  + 
Sbjct: 98  MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIR 156

Query: 121 LSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
           ++  +++        S+T   L+L  N +T    
Sbjct: 157 IADTNITTIPQGLPPSLT--ELHLDGNKITKVDA 188

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 5/178 (2%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSN--NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFC 63
           +        + +     ++L       SG     ++G+++L    +++ +++  IP    
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL- 169

Query: 64  SLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSS 123
             PSL  L L  N ++     +L+               S     ++ +   L  L L++
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 124 NHLSGPIPPSMSSMTRLSLNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCSPPLTT 181
           N L               + L  N+++           +N          L S P+  
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 7e-08
 Identities = 31/154 (20%), Positives = 50/154 (32%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
           L R  L    P     +    +L L +N L       +  L  L    L  N +S     
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 61  SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLD 120
           +F  L SL  L L +N ++     A ++         F    S    E +  L+ L+ L 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 121 LSSNHLSGPIPPSMSSMTRLSLNLSYNDLTGPIP 154
           L+ N                    S +++   +P
Sbjct: 232 LNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 6   LNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSL 65
           L      +  ++ N + L L  N +S      + GL  L    L  N ++   P +F  L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 66  PSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNH 125
             L+ L L  N+LS     AL    A          P             L+    SS+ 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYL-RLNDNPWVCDCRARPLWAWLQKFRGSSSE 259

Query: 126 LSGPIPPSMSSMTRLSLNLSYNDLTG 151
           +   +P  ++   R    L+ NDL G
Sbjct: 260 VPCSLPQRLAG--RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 5   LLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCS 64
            L    P +   +     L L    L    P  + GL  L    L +N+L      +F  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 65  LPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSN 124
           L +L  L L  N +S     A +   +           +   P     L +L TL L +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 125 HLSGPIPPSMSSMTRL-SLNLSYNDLTGPIPL 155
           +LS     +++ +  L  L L+ N        
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 30/131 (22%), Positives = 41/131 (31%), Gaps = 33/131 (25%)

Query: 13  SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLK 72
             S +          N  S EI S  +    L   ++SNN L   +PA     P L  L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLI 310

Query: 73  LSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPP 132
            S N L+                          +PE     Q L+ L +  N L    P 
Sbjct: 311 ASFNHLA-------------------------EVPE---LPQNLKQLHVEYNPLRE-FPD 341

Query: 133 SMSSMTRLSLN 143
              S+  L +N
Sbjct: 342 IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 1   LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPA 60
              +  +  I        +   L++SNN L  E+P+    LE L     S N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPE 321

Query: 61  SFCSLPSLVWLKLSKNDLSG--ELFVALQN 88
                 +L  L +  N L    ++  ++++
Sbjct: 322 ---LPQNLKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 31/103 (30%)

Query: 49  LSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPE 108
              N+ S  I +     PSL  L +S N L                           +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-------------------------ELPA 301

Query: 109 NIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSLNLSYNDLTG 151
               L++L     S NHL+  +P    ++    L++ YN L  
Sbjct: 302 LPPRLERL---IASFNHLAE-VPELPQNLK--QLHVEYNPLRE 338

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 20/155 (12%), Positives = 39/155 (25%), Gaps = 3/155 (1%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE- 81
           LDL+   L  ++         ++      + +   +   F S   +  + LS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 82  LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS 141
           L   L  C+            S  I   +     L  L+LS               +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 142 LNLSYNDLTGPIPLTKQFQTFNDPSIYMGNADLCS 176
           L+                      S  +   +L  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 23  LDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL 82
           L L++  L+  +  + E L  +   DLS+N L    P +  +L  L  L+ S N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 83  FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLSL 142
            VA               +      + + S  +L  L+L  N L          +  +  
Sbjct: 60  GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLP 117

Query: 143 NLSY 146
           ++S 
Sbjct: 118 SVSS 121

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 19 NFSFLDLSNNILSGE-IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKL 73
          +   LD+    LS          L++  V  L +  L+      I ++    P+L  L L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 74 SKNDLSGELFVAL 86
            N+L       +
Sbjct: 63 RSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 105 RIPENIGSLQKLETLDLSSNHLSG----PIPPSMSSMTRL-SLNLSYNDLT--GPIPLTK 157
           R  E +  LQ+ + + L    L+      I  ++     L  LNL  N+L   G   + +
Sbjct: 18  RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77

Query: 158 QFQTFN 163
             QT +
Sbjct: 78  GLQTPS 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.91
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.53

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=2.7e-27  Score=197.87  Aligned_cols=179  Identities=30%  Similarity=0.493  Sum_probs=130.3

Q ss_pred             CCCcCCc--cCCcCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCC
Q 042227            2 SRSLLNG--TIPPSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDL   78 (244)
Q Consensus         2 s~N~l~~--~ip~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l   78 (244)
                      ++|.++|  .+|+.+++|++|++|++++ |.++|.+|..+.++++|++|++++|++.+..+..+..+..|+.+++++|.+
T Consensus        58 ~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~  137 (313)
T d1ogqa_          58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccc
Confidence            4566665  4677777777777777775 677777777777777777777777776655555555555555555555555


Q ss_pred             CCchhhhccCCCCCceecCCCCC---------------------------------------------------------
Q 042227           79 SGELFVALQNCTAFTGFPEFITE---------------------------------------------------------  101 (244)
Q Consensus        79 ~~~~~~~l~~l~~L~~L~l~~n~---------------------------------------------------------  101 (244)
                      .+.+|..+.+++.++.++++.|.                                                         
T Consensus       138 ~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~  217 (313)
T d1ogqa_         138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred             cccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555555555555544444333                                                         


Q ss_pred             ---------------CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccccCCCC
Q 042227          102 ---------------PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQTFNDP  165 (244)
Q Consensus       102 ---------------l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~l~~~  165 (244)
                                     +.+.+ ..++.+++|+.|++++|+++|.+|..++++++|+ |++++|+++|.+|....++.+...
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             cccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence                           33333 3477789999999999999999999999999999 999999999999988888888877


Q ss_pred             ccccCCCCCCCCCCCCCC
Q 042227          166 SIYMGNADLCSPPLTTKC  183 (244)
Q Consensus       166 ~~~~~n~~~c~~~~~~~c  183 (244)
                      . +.+|+.+||.|+. .|
T Consensus       297 ~-l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         297 A-YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             G-TCSSSEEESTTSS-CC
T ss_pred             H-hCCCccccCCCCC-CC
Confidence            7 8999999998875 55

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.6e-22  Score=160.76  Aligned_cols=171  Identities=26%  Similarity=0.231  Sum_probs=121.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+|++..+..|.++++|++|++++|+|+ .+| .+..+++|++|++++|+++ ..+..+..+++|++|++++|.+..
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          38 LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             CcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccccccccce
Confidence            4566666544455666666666666666666 333 2355666667777666666 445566666777777777777666


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC-cc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT-KQ  158 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~-~~  158 (244)
                      ..+..+..+.+++.|.+..|.++...+..+..+++|+.+++++|++++..+..+..+++|+ |++++|.|+ .+|.. ..
T Consensus       115 ~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             eeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence            6666667777777777777777766667778889999999999999977777889999999 999999998 56643 33


Q ss_pred             cccCCCCccccCCCCCCC
Q 042227          159 FQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       159 ~~~l~~~~~~~~n~~~c~  176 (244)
                      ...+.... ..+||..|.
T Consensus       194 ~~~L~~L~-L~~Np~~Cd  210 (266)
T d1p9ag_         194 SHLLPFAF-LHGNPWLCN  210 (266)
T ss_dssp             TCCCSEEE-CCSCCBCCS
T ss_pred             CCCCCEEE-ecCCCCCCC
Confidence            44455455 788998885

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=3e-22  Score=166.90  Aligned_cols=148  Identities=29%  Similarity=0.506  Sum_probs=119.0

Q ss_pred             CcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchh
Q 042227            4 SLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELF   83 (244)
Q Consensus         4 N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~   83 (244)
                      |+++|.+|+.+++|++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.+|..+.+++.++.+++++|.+.+.+|
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip  166 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccc
Confidence            88999999999999999999999999887777777777777777777777766667777777777777777666655554


Q ss_pred             hhccCC-----------------------------------------------------------------------CCC
Q 042227           84 VALQNC-----------------------------------------------------------------------TAF   92 (244)
Q Consensus        84 ~~l~~l-----------------------------------------------------------------------~~L   92 (244)
                      ..+..+                                                                       ++|
T Consensus       167 ~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L  246 (313)
T d1ogqa_         167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL  246 (313)
T ss_dssp             GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444433                                                                       333


Q ss_pred             ceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCC-CcCC
Q 042227           93 TGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYND-LTGP  152 (244)
Q Consensus        93 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~-l~~~  152 (244)
                      +.|+++.|+++|.+|+.++++++|++|++++|+++|.+|. +.++++|+ +++++|+ +.|.
T Consensus       247 ~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            3488999999999999999999999999999999998885 68899999 9999998 5553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=159.85  Aligned_cols=161  Identities=20%  Similarity=0.189  Sum_probs=137.8

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL   82 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~   82 (244)
                      .|.++...|..+.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            45566566778889999999999999998666777888899999999999998666678888999999999999998877


Q ss_pred             hhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccccc
Q 042227           83 FVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQT  161 (244)
Q Consensus        83 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~~  161 (244)
                      +..+..+++|+.+.+..|.+++..|..|.++++|++||+++|++++..+..|..+++|+ +++++|++.|.++..+...+
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~  249 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHH
Confidence            88899999999999999999988889999999999999999999977778899999999 99999999988876544444


Q ss_pred             CC
Q 042227          162 FN  163 (244)
Q Consensus       162 l~  163 (244)
                      +.
T Consensus       250 l~  251 (284)
T d1ozna_         250 LQ  251 (284)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=1.2e-20  Score=146.63  Aligned_cols=132  Identities=26%  Similarity=0.270  Sum_probs=75.5

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccC-CcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI-PASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFI   99 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~   99 (244)
                      ++++.++++++ .+|..+.  +++++|+|++|.|++.+ +..|..+++|+.|++++|++....+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555 4454432  45555666666554322 34445555666666666665555555555556666666666


Q ss_pred             CCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCC
Q 042227          100 TEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPL  155 (244)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~  155 (244)
                      |+++...|+.|.++++|++|+|++|+|++..+..|..+++|+ +++++|++.+.++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            655555555566666666666666666654555566666666 66666666555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-19  Score=146.98  Aligned_cols=152  Identities=24%  Similarity=0.170  Sum_probs=137.6

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+|+ .+| .++.+++|++|++++|+++ ..+..+.++++|+.|++++|.+....+..+..+.++++|++++|.++.
T Consensus        62 L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          62 LDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             CTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             ccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccce
Confidence            5789997 454 3578999999999999999 567789999999999999999997777888899999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                      ..+..+..+++++.++++.|++++..++.|..+++|++|+|++|+|+ .+|..+..++.|+ +++++|++.+.+...
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~~  214 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL  214 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGH
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcchH
Confidence            87888899999999999999999888888999999999999999999 8999999999999 999999999887543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-20  Score=149.88  Aligned_cols=175  Identities=21%  Similarity=0.229  Sum_probs=116.2

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccC-------------------------CccccCCCCCCEEEccCCcCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEI-------------------------PSNWEGLEELMVKDLSNNSLS   55 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~-------------------------p~~~~~l~~L~~L~L~~n~l~   55 (244)
                      |++|+|+..-+..|.++++|++|++++|.+....                         +..|.++++|++|++++|.+.
T Consensus        39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~  118 (284)
T d1ozna_          39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (284)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccc
Confidence            5788887555567888888888888888765322                         334455566777777777766


Q ss_pred             ccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccC
Q 042227           56 GGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMS  135 (244)
Q Consensus        56 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~  135 (244)
                      ...+..+..+++|+.+++++|++++..+..+..+++|+.|+++.|.+++..+..|.++++|+.+++++|++++..|..|.
T Consensus       119 ~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhh
Confidence            44555666667777777777777665566677777777777777777766666677777777777777777766677777


Q ss_pred             CCCceE-EEcccCCCcCCCCCC-cccccCCCCccccCCCCCCC
Q 042227          136 SMTRLS-LNLSYNDLTGPIPLT-KQFQTFNDPSIYMGNADLCS  176 (244)
Q Consensus       136 ~l~~L~-L~ls~N~l~~~~p~~-~~~~~l~~~~~~~~n~~~c~  176 (244)
                      .+++|+ +++++|.+.+..|.. .....+.... +.+|+..|.
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~-l~~N~l~C~  240 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLR-LNDNPWVCD  240 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE-CCSSCEECS
T ss_pred             hhhhcccccccccccccccccccccccccCEEE-ecCCCCCCC
Confidence            777777 777777776554422 1223333333 556666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.5e-20  Score=144.84  Aligned_cols=174  Identities=18%  Similarity=0.144  Sum_probs=135.6

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccC-CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEI-PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      ++|+++ .+|..+.  +++++|+|++|+|+..+ +..|.++++|+.|++++|.+....+..+..+++|++|++++|++++
T Consensus        16 s~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          16 TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             eCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            577887 7887664  68999999999998644 5678999999999999999998888999999999999999999998


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQF  159 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~  159 (244)
                      ..+..|.++++|+.|+++.|.+++..++.|..+++|++|++++|.+... .....-...++ ..+..|.+.+..|..  +
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~~p~~--l  169 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGAPSK--V  169 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCSSTT--T
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeCCChh--h
Confidence            8888999999999999999999988888899999999999999999843 32222123456 777888888776643  3


Q ss_pred             ccCCCCccccCCCCCCCCCCCCC
Q 042227          160 QTFNDPSIYMGNADLCSPPLTTK  182 (244)
Q Consensus       160 ~~l~~~~~~~~n~~~c~~~~~~~  182 (244)
                      +.....+ ...|..-|..+....
T Consensus       170 ~~~~l~~-L~~n~l~C~~~~~~g  191 (192)
T d1w8aa_         170 RDVQIKD-LPHSEFKCSSENSEG  191 (192)
T ss_dssp             TTSBGGG-SCTTTCCCCCC---C
T ss_pred             cCCEeee-cCHhhCcCCCCCCCC
Confidence            3332223 344545565443333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1.9e-17  Score=136.81  Aligned_cols=55  Identities=27%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLS   55 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   55 (244)
                      |++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            3556665433345666666666666666666545556666666666666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3e-16  Score=122.04  Aligned_cols=127  Identities=24%  Similarity=0.380  Sum_probs=59.6

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCc
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFT   93 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~   93 (244)
                      +..+++|++|++++|++++. ++ +.++++|+.|++++|.+. .++ .+.++++|+.|++++|.+...  ..+..+++|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~  131 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLN  131 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             cccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhH
Confidence            34445555555555555432 21 444555555555555444 222 244455555555555544422  2244455555


Q ss_pred             eecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCc
Q 042227           94 GFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        94 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                      .++++.|.+.. + +.+..+++|+.|++++|++++ ++ .++++++|+ |++++|+++
T Consensus       132 ~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         132 RLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             Hhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence            55555554432 2 234455555555555555552 22 244555555 555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=3.6e-16  Score=129.06  Aligned_cols=146  Identities=27%  Similarity=0.270  Sum_probs=102.1

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCch
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGEL   82 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~   82 (244)
                      +++++ .+|..+.  +++++|++++|+|+...+..|.++++|+.|++++|.+....|..|.++++|++|++++|+++...
T Consensus        19 ~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~   95 (305)
T d1xkua_          19 DLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP   95 (305)
T ss_dssp             TSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCc
Confidence            34565 6787764  68999999999999555568999999999999999999767888999999999999999875321


Q ss_pred             -----------------------------------------------hhhccCCCCCceecCCCCC--------------
Q 042227           83 -----------------------------------------------FVALQNCTAFTGFPEFITE--------------  101 (244)
Q Consensus        83 -----------------------------------------------~~~l~~l~~L~~L~l~~n~--------------  101 (244)
                                                                     +..+..+++|+.+.+..|.              
T Consensus        96 ~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~  175 (305)
T d1xkua_          96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE  175 (305)
T ss_dssp             SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSE
T ss_pred             cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCE
Confidence                                                           1112223333333333333              


Q ss_pred             -------CCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227          102 -------PSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus       102 -------l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                             .++..+..+.+++.++.|++++|++++..+..+.++++|+ |++++|.++.
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc
Confidence                   3333445566666677777777777755566667777777 7777777763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.2e-16  Score=121.28  Aligned_cols=138  Identities=25%  Similarity=0.309  Sum_probs=88.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++. ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.|++++|.+.. 
T Consensus        54 ~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-  126 (210)
T d1h6ta2          54 NNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-  126 (210)
T ss_dssp             TTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-
T ss_pred             cCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccccccccccc-
Confidence            3455543 22 25566777777777777764 33 2566777777777777776 344 46667777777777776653 


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~  151 (244)
                       ...+..+++++.++++.|.+++  +..+..+++|+++++++|++++ ++. ++++++|+ |++++|+++.
T Consensus       127 -~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         127 -INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             -CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB
T ss_pred             -cccccccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC
Confidence             2346666777777777776653  2345667777777777777773 433 67777777 7787777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.8e-17  Score=122.28  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=96.9

Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCC
Q 042227           13 SMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAF   92 (244)
Q Consensus        13 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L   92 (244)
                      .+.+..++++|++++|+|+ .++..+..+++|++|++++|.|+ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            3567788999999999999 56777788999999999999998 554 58889999999999999985545556678888


Q ss_pred             ceecCCCCCCCCCC-CcccCCCCCCCeecCCCCCCCCCCcc----ccCCCCceE-EE
Q 042227           93 TGFPEFITEPSGRI-PENIGSLQKLETLDLSSNHLSGPIPP----SMSSMTRLS-LN  143 (244)
Q Consensus        93 ~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~----~l~~l~~L~-L~  143 (244)
                      +.|++++|.++... ...+..+++|++|++++|.++ ..|.    .++.+++|+ ||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888888776421 134677788888888888776 3443    356667776 65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.7e-16  Score=112.54  Aligned_cols=101  Identities=31%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCC
Q 042227           21 SFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFIT  100 (244)
Q Consensus        21 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n  100 (244)
                      ++|++++|.++ .++ .+..+++|++|++++|.++ .+|+.+..+++|++|++++|+++.                    
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~--------------------   57 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--------------------   57 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--------------------
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc--------------------
Confidence            46788888887 454 3777888888888888887 677777788888888888888873                    


Q ss_pred             CCCCCCCcccCCCCCCCeecCCCCCCCCCC-ccccCCCCceE-EEcccCCCc
Q 042227          101 EPSGRIPENIGSLQKLETLDLSSNHLSGPI-PPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~l~~l~~L~-L~ls~N~l~  150 (244)
                           +| .+..+++|++|++++|+++... ...+..+++|+ +++++|+++
T Consensus        58 -----l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          58 -----VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -----CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             -----cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence                 22 2444555555555555555211 12345555555 555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.5e-15  Score=117.76  Aligned_cols=134  Identities=27%  Similarity=0.395  Sum_probs=114.1

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|.|++ ++ .++.+++|++|++++|++++ +| .+.++++|+.|++++|.+. .+ ..+..++.++.+++++|.+++
T Consensus        75 L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2          75 LNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD  148 (210)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc-cc-ccccccccccccccccccccc
Confidence            57888985 44 36889999999999999994 55 5889999999999999987 44 467889999999999999975


Q ss_pred             chhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEccc
Q 042227           81 ELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSY  146 (244)
Q Consensus        81 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~  146 (244)
                        +..+..+++|+.+.+++|++++ ++ .+.++++|++|++++|+++ .++ .++++++|+ |++++
T Consensus       149 --~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 --ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             --cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence              3457789999999999999985 33 3889999999999999999 565 589999999 99875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=4.2e-15  Score=115.45  Aligned_cols=156  Identities=26%  Similarity=0.345  Sum_probs=121.9

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      +.+.+++.++  ..++.++++|++++|.++ .++ .+..+++|++|++++|.+++ ++. ++++++|++|++++|.+...
T Consensus        26 ~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          26 GKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             TCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccccc
Confidence            4555655443  246789999999999999 443 57889999999999999984 443 89999999999999998743


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCCcccc
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLTKQFQ  160 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~~~~~  160 (244)
                       + .+..+++|+.++++.+.....  ..+..+++|+.|++++|++. .++ .+..+++++ +++++|.+++.. ....++
T Consensus       100 -~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~  172 (199)
T d2omxa2         100 -T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLT  172 (199)
T ss_dssp             -G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCT
T ss_pred             -c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc-cccCCC
Confidence             3 488999999999999987753  45888999999999999998 444 588899999 999999998643 333445


Q ss_pred             cCCCCccccCC
Q 042227          161 TFNDPSIYMGN  171 (244)
Q Consensus       161 ~l~~~~~~~~n  171 (244)
                      .+.... ..+|
T Consensus       173 ~L~~L~-ls~N  182 (199)
T d2omxa2         173 TLERLD-ISSN  182 (199)
T ss_dssp             TCCEEE-CCSS
T ss_pred             CCCEEE-CCCC
Confidence            555444 3444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.2e-15  Score=108.39  Aligned_cols=75  Identities=29%  Similarity=0.388  Sum_probs=67.2

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      |++|+++ .++ .+..+++|++|++++|+++ .+|+.+..+++|+.|++++|.|+ .+| .+..+++|++|++++|+++.
T Consensus         5 Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           5 LAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             CTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             cCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCC
Confidence            6899998 555 4889999999999999999 67888999999999999999998 555 58999999999999999984

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.6e-14  Score=114.17  Aligned_cols=139  Identities=22%  Similarity=0.308  Sum_probs=76.9

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.++. ++ .+..+++|++|++++|.+++..|  +.++++|+.+++++|.++ .++ .+.++++|+.++++++...+.
T Consensus        49 ~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~  122 (227)
T d1h6ua2          49 FGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDV  122 (227)
T ss_dssp             TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccccccccccc
Confidence            4566653 33 46677777777777777774322  667777777777777766 333 456677777777777665532


Q ss_pred             hh--------------------hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           82 LF--------------------VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        82 ~~--------------------~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                      .+                    ..+..+++|+.|.+..|.+...  ..++++++|++|++++|++++ ++. ++++++|+
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~  198 (227)
T d1h6ua2         123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             chhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCC
Confidence            11                    1223344444444444444322  124455555555555555552 322 44555555


Q ss_pred             -EEcccCCCc
Q 042227          142 -LNLSYNDLT  150 (244)
Q Consensus       142 -L~ls~N~l~  150 (244)
                       |++++|+++
T Consensus       199 ~L~Ls~N~lt  208 (227)
T d1h6ua2         199 EVHLKNNQIS  208 (227)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECcCCcCC
Confidence             555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=7.8e-15  Score=123.88  Aligned_cols=143  Identities=25%  Similarity=0.369  Sum_probs=85.6

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++|.+++..|  ....++|++|++++|+++. + +.+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++++.
T Consensus       205 ~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         205 TNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             cCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCC
Confidence            4556654433  3445667777777777663 2 245666777777777777663 22 255666677777766666543


Q ss_pred             hh--------------------hhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           82 LF--------------------VALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        82 ~~--------------------~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                      .+                    ..+..+++++.++++.|++++..  .+..+++|++|++++|+++ .++ .++++++|+
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~  354 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNIN  354 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCC
T ss_pred             CccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCC
Confidence            21                    23455566666666666666432  2566667777777777766 333 466667777


Q ss_pred             -EEcccCCCcCCCC
Q 042227          142 -LNLSYNDLTGPIP  154 (244)
Q Consensus       142 -L~ls~N~l~~~~p  154 (244)
                       +++++|++++.+|
T Consensus       355 ~L~l~~N~l~~l~~  368 (384)
T d2omza2         355 WLSAGHNQISDLTP  368 (384)
T ss_dssp             EEECCSSCCCBCGG
T ss_pred             EEECCCCcCCCChh
Confidence             7777777665443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=2.8e-14  Score=120.40  Aligned_cols=137  Identities=23%  Similarity=0.325  Sum_probs=99.8

Q ss_pred             CCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccC--------------------Ccc
Q 042227            2 SRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI--------------------PAS   61 (244)
Q Consensus         2 s~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--------------------p~~   61 (244)
                      ++|+++. + +.+..+++|+.|++++|.+++..  .+..+++|+.|++++|.+++..                    ...
T Consensus       227 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~  302 (384)
T d2omza2         227 NGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP  302 (384)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccc
Confidence            4555543 2 24556666666666666666432  2555666666666666554221                    123


Q ss_pred             cCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE
Q 042227           62 FCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        62 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~  141 (244)
                      +..+++++.|++++|++++..  .+..+++|+.|++++|++++ ++ .++++++|++|++++|++++..|  +.++++|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            566789999999999998754  38899999999999999985 44 58999999999999999995443  88999999


Q ss_pred             -EEcccCC
Q 042227          142 -LNLSYND  148 (244)
Q Consensus       142 -L~ls~N~  148 (244)
                       |++++|.
T Consensus       377 ~L~L~~Na  384 (384)
T d2omza2         377 QLGLNDQA  384 (384)
T ss_dssp             EEECCCEE
T ss_pred             EeeCCCCc
Confidence             9999983

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8e-15  Score=110.29  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             cccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCC
Q 042227           37 NWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKL  116 (244)
Q Consensus        37 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  116 (244)
                      .+.+..++++|+|++|+|+ .++..+..+++|+.|++++|+++ .+ +.+..+++|+.|++++|.++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            4668889999999999998 67877788999999999999998 44 458899999999999999986555556789999


Q ss_pred             CeecCCCCCCCCCCc--cccCCCCceE-EEcccCCCcCC
Q 042227          117 ETLDLSSNHLSGPIP--PSMSSMTRLS-LNLSYNDLTGP  152 (244)
Q Consensus       117 ~~L~ls~N~l~~~~p--~~l~~l~~L~-L~ls~N~l~~~  152 (244)
                      ++|++++|+++ .++  ..+..+++|+ +++++|+++..
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCccccc
Confidence            99999999998 444  4688899999 99999998743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=2.1e-13  Score=107.60  Aligned_cols=136  Identities=22%  Similarity=0.386  Sum_probs=105.7

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCC--------------------c
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIP--------------------A   60 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--------------------~   60 (244)
                      +++|++++..|  +..+++|+++++++|.++ .++ .+.++++|+.++++++...+..+                    .
T Consensus        70 ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  145 (227)
T d1h6ua2          70 LKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS  145 (227)
T ss_dssp             CCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchhhhhchhh
Confidence            56788875433  788889999999988887 343 46778888888888776552211                    1


Q ss_pred             ccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCce
Q 042227           61 SFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRL  140 (244)
Q Consensus        61 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L  140 (244)
                      .+..+++|+.|++++|.+.+..  .+.++++|+.|++++|++++ ++ .+.++++|++|++++|+++ .++. ++++++|
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L  219 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNL  219 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTC
T ss_pred             hhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCC
Confidence            2455678999999999987543  48899999999999999985 44 3889999999999999999 4553 8899999


Q ss_pred             E-EEccc
Q 042227          141 S-LNLSY  146 (244)
Q Consensus       141 ~-L~ls~  146 (244)
                      + +++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9 99875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-13  Score=100.64  Aligned_cols=113  Identities=23%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCC-cCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceec
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN-SLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFP   96 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~   96 (244)
                      ...+.++.+++.+. ..|..+..+++|+.|++++| .++...+..|..+++|+.|++++|+++.                
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~----------------   70 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF----------------   70 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE----------------
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC----------------
Confidence            34456777777777 56666777777777777655 4664445667777777777777777763                


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeecCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCCCC
Q 042227           97 EFITEPSGRIPENIGSLQKLETLDLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIPLT  156 (244)
Q Consensus        97 l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p~~  156 (244)
                              ..+..|..+++|++|+|++|+++ .+|........|+ |++++|++.+.+...
T Consensus        71 --------i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          71 --------VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             --------ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred             --------cccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccCCchHH
Confidence                    33566888889999999999998 5555444444688 999999998766443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.7e-13  Score=98.01  Aligned_cols=99  Identities=25%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             CCcCCccCCcCCCCCCCccEEEccCC-cccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc
Q 042227            3 RSLLNGTIPPSMSEMKNFSFLDLSNN-ILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE   81 (244)
Q Consensus         3 ~N~l~~~ip~~l~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~   81 (244)
                      ++.+. .+|..+..+++|++|++++| .++...++.|.++++|+.|++++|+|+...+..|..+++|++|+|++|+++  
T Consensus        17 ~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~--   93 (156)
T d2ifga3          17 RDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE--   93 (156)
T ss_dssp             SSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS--
T ss_pred             CCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc--
Confidence            44454 56888899999999999876 588666678999999999999999999766888999999999999999998  


Q ss_pred             hhhhccCCCCCceecCCCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           82 LFVALQNCTAFTGFPEFITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        82 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                                             .+|........|++|++++|.+.
T Consensus        94 -----------------------~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          94 -----------------------SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -----------------------CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -----------------------ccChhhhccccccccccCCCccc
Confidence                                   23333333345778888888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7e-13  Score=105.22  Aligned_cols=91  Identities=23%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             cCCcCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccC-CcccCCCCCCcEEEccC-CCCCCchhhhc
Q 042227            9 TIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGI-PASFCSLPSLVWLKLSK-NDLSGELFVAL   86 (244)
Q Consensus         9 ~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~-N~l~~~~~~~l   86 (244)
                      .+|+.+.  +++++|++++|+|+...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. |++....+..+
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4444332  35566666666665333344566666666666666554332 23455555555555432 44444444555


Q ss_pred             cCCCCCceecCCCCC
Q 042227           87 QNCTAFTGFPEFITE  101 (244)
Q Consensus        87 ~~l~~L~~L~l~~n~  101 (244)
                      .++++|+.+++..|.
T Consensus       100 ~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1         100 QNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECCTTCCEEEEESCC
T ss_pred             cccccccccccchhh
Confidence            555555555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.8e-16  Score=123.39  Aligned_cols=111  Identities=19%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             CccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecCCCCCCCCCCCcccCCCC
Q 042227           35 PSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPEFITEPSGRIPENIGSLQ  114 (244)
Q Consensus        35 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~  114 (244)
                      |..+..+++|++|++++|+|+ .++ .+..+++|++|++++|+++ .++.....+++|+.|++++|.++. + +.+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence            334444555555555555554 232 2444455555555555544 223333333445555555554442 2 2244555


Q ss_pred             CCCeecCCCCCCCCCCc--cccCCCCceE-EEcccCCCcC
Q 042227          115 KLETLDLSSNHLSGPIP--PSMSSMTRLS-LNLSYNDLTG  151 (244)
Q Consensus       115 ~L~~L~ls~N~l~~~~p--~~l~~l~~L~-L~ls~N~l~~  151 (244)
                      +|+.|++++|+++ .++  ..+..+++|+ +++++|++..
T Consensus       116 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         116 NLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            5666666666655 232  2455556666 6666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.32  E-value=2.2e-11  Score=100.77  Aligned_cols=72  Identities=26%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             CCCCcCCccCCcCCCCCCCccEEEccCCcccccCCccccCC-----------------CCCCEEEccCCcCCccCCcccC
Q 042227            1 LSRSLLNGTIPPSMSEMKNFSFLDLSNNILSGEIPSNWEGL-----------------EELMVKDLSNNSLSGGIPASFC   63 (244)
Q Consensus         1 Ls~N~l~~~ip~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l-----------------~~L~~L~L~~n~l~~~~p~~~~   63 (244)
                      |++|.++ .+|+.   +++|++|++++|+|+ .+|+.+.++                 +.|++|++++|.++ .+|. ++
T Consensus        45 Ls~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~  117 (353)
T d1jl5a_          45 LNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQ  117 (353)
T ss_dssp             CTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CT
T ss_pred             eCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hh
Confidence            4667776 56753   457788888888887 566544321                 23555555555555 4443 34


Q ss_pred             CCCCCcEEEccCCCCC
Q 042227           64 SLPSLVWLKLSKNDLS   79 (244)
Q Consensus        64 ~l~~L~~L~Ls~N~l~   79 (244)
                      .+++|+.|++++|.+.
T Consensus       118 ~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TCTTCCEEECCSSCCS
T ss_pred             hhccceeecccccccc
Confidence            5666666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=9.1e-15  Score=113.56  Aligned_cols=127  Identities=21%  Similarity=0.253  Sum_probs=102.9

Q ss_pred             cCCCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           12 PSMSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        12 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      ..+..+++|++|++++|+|+ .++ .+.++++|+.|++++|.++ .+|..+..+++|++|++++|+++..  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            45777999999999999999 555 5889999999999999998 6776666677899999999999853  35888999


Q ss_pred             CceecCCCCCCCCCCC-cccCCCCCCCeecCCCCCCCCCCccc----------cCCCCceE-EE
Q 042227           92 FTGFPEFITEPSGRIP-ENIGSLQKLETLDLSSNHLSGPIPPS----------MSSMTRLS-LN  143 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~----------l~~l~~L~-L~  143 (244)
                      |+.|+++.|.++.... ..+..+++|+.|++++|++....+..          +..+++|+ ||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999875321 45889999999999999986332221          45677777 66

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-11  Score=97.73  Aligned_cols=153  Identities=12%  Similarity=0.026  Sum_probs=111.7

Q ss_pred             CCCCcCCccCC-cCCCCCCCccEEEccC-CcccccCCccccCCCCCCEEEccCCcCCccCC-cccCCCCCCcEEEccCCC
Q 042227            1 LSRSLLNGTIP-PSMSEMKNFSFLDLSN-NILSGEIPSNWEGLEELMVKDLSNNSLSGGIP-ASFCSLPSLVWLKLSKND   77 (244)
Q Consensus         1 Ls~N~l~~~ip-~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~   77 (244)
                      |++|.+...+| ..|.+++.++++.+.. |.+....+..|.++++|+++++++|.+....+ ..+..+..+..+...+++
T Consensus        60 ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~  139 (242)
T d1xwdc1          60 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN  139 (242)
T ss_dssp             EESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT
T ss_pred             hccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence            35777776554 4678899999998764 67876777889999999999999999973222 233455667777777788


Q ss_pred             CCCchhhhccCCC-CCceecCCCCCCCCCCCcccCCCCCCCee-cCCCCCCCCCCccccCCCCceE-EEcccCCCcCCCC
Q 042227           78 LSGELFVALQNCT-AFTGFPEFITEPSGRIPENIGSLQKLETL-DLSSNHLSGPIPPSMSSMTRLS-LNLSYNDLTGPIP  154 (244)
Q Consensus        78 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-~ls~N~l~~~~p~~l~~l~~L~-L~ls~N~l~~~~p  154 (244)
                      +....+..+..++ .++.+.+..|.++.. +.......+++.+ ++++|+++...+..|.++++|+ |++++|+++ .+|
T Consensus       140 l~~i~~~~~~~~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~  217 (242)
T d1xwdc1         140 IHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP  217 (242)
T ss_dssp             CCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCC
T ss_pred             cccccccccccccccceeeeccccccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccC
Confidence            8766666777665 788899999998854 4334444555444 6788889843345688999999 999999998 444


Q ss_pred             C
Q 042227          155 L  155 (244)
Q Consensus       155 ~  155 (244)
                      .
T Consensus       218 ~  218 (242)
T d1xwdc1         218 S  218 (242)
T ss_dssp             S
T ss_pred             H
Confidence            3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.9e-11  Score=96.16  Aligned_cols=136  Identities=23%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             CCCCccEEEccCCccccc-CCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCC-CCCCc-hhhhccCCCCC
Q 042227           16 EMKNFSFLDLSNNILSGE-IPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKN-DLSGE-LFVALQNCTAF   92 (244)
Q Consensus        16 ~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L   92 (244)
                      ...+|++|+++++.++.. ++..+..+++|++|+++++.+++..+..+..+++|++|+++++ .++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            455777788877776643 3445667777778877777777666666777777777777773 45432 22234456777


Q ss_pred             ceecCCCCC-C---------------------CCC--------CCcccCCCCCCCeecCCCC-CCCCCCccccCCCCceE
Q 042227           93 TGFPEFITE-P---------------------SGR--------IPENIGSLQKLETLDLSSN-HLSGPIPPSMSSMTRLS  141 (244)
Q Consensus        93 ~~L~l~~n~-l---------------------~~~--------~p~~~~~l~~L~~L~ls~N-~l~~~~p~~l~~l~~L~  141 (244)
                      +.|+++++. +                     .+.        +......+++|++|+++++ .+++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777776543 1                     110        1112345788999999885 57766777888889999


Q ss_pred             -EEcccC-CCcC
Q 042227          142 -LNLSYN-DLTG  151 (244)
Q Consensus       142 -L~ls~N-~l~~  151 (244)
                       |+++++ .+++
T Consensus       204 ~L~L~~C~~i~~  215 (284)
T d2astb2         204 HLSLSRCYDIIP  215 (284)
T ss_dssp             EEECTTCTTCCG
T ss_pred             EEECCCCCCCCh
Confidence             999985 5554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.91  E-value=5.4e-09  Score=85.96  Aligned_cols=96  Identities=25%  Similarity=0.226  Sum_probs=78.7

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCchhhhccCCCCCceecC
Q 042227           18 KNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGELFVALQNCTAFTGFPE   97 (244)
Q Consensus        18 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l   97 (244)
                      .++++|++++|.++ .+|+.   .++|++|++++|+|+ .+|+.+   .+|+.|++++|+++. ++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhhh---ccccccccc
Confidence            36889999999999 67864   478999999999998 788664   588999999999873 3321   146999999


Q ss_pred             CCCCCCCCCCcccCCCCCCCeecCCCCCCC
Q 042227           98 FITEPSGRIPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        98 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      +.|.+. .+|. ++.+++|++|++++|.++
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccc-hhhhccceeecccccccc
Confidence            999988 4564 688999999999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.3e-09  Score=88.44  Aligned_cols=134  Identities=19%  Similarity=0.129  Sum_probs=85.0

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCC-cCCcc-CCcccCCCCCCcEEEccCC---------------
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNN-SLSGG-IPASFCSLPSLVWLKLSKN---------------   76 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N---------------   76 (244)
                      +..+++|++|+++++.+++..+..+..+++|++|+++++ .++.. +...+..+++|++|+++++               
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            445556666666666555444445555555666665553 33311 1111223444444444442               


Q ss_pred             --------------CCCCc-hhhhccCCCCCceecCCCC-CCCCCCCcccCCCCCCCeecCCC-CCCCCCCccccCCCCc
Q 042227           77 --------------DLSGE-LFVALQNCTAFTGFPEFIT-EPSGRIPENIGSLQKLETLDLSS-NHLSGPIPPSMSSMTR  139 (244)
Q Consensus        77 --------------~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~l~~l~~  139 (244)
                                    .++.. +......+++|+.|+++.+ .+++.....+.++++|++|++++ +.+++.....++++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence                          22221 2233456889999999986 47777777888999999999999 5788666677888999


Q ss_pred             eE-EEcccC
Q 042227          140 LS-LNLSYN  147 (244)
Q Consensus       140 L~-L~ls~N  147 (244)
                      |+ ++++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            99 999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.74  E-value=6.3e-10  Score=92.48  Aligned_cols=85  Identities=21%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             CCCcEEEccCCCCCC----chhhhccCCCCCceecCCCCCCCCC-----CCcccCCCCCCCeecCCCCCCCCC----Ccc
Q 042227           66 PSLVWLKLSKNDLSG----ELFVALQNCTAFTGFPEFITEPSGR-----IPENIGSLQKLETLDLSSNHLSGP----IPP  132 (244)
Q Consensus        66 ~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~ls~N~l~~~----~p~  132 (244)
                      +.|+.+++++|.++.    .+...+...+.|+.|+++.|.+...     +...+..+++|+.|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            344555555554432    1223344455566666666555421     222344555666666666665421    233


Q ss_pred             ccCCCCceE-EEcccCCCc
Q 042227          133 SMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus       133 ~l~~l~~L~-L~ls~N~l~  150 (244)
                      .+..++.|+ |++++|.++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCC
T ss_pred             cccccccchhhhhhcCccC
Confidence            445555666 666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=7.6e-10  Score=91.97  Aligned_cols=127  Identities=22%  Similarity=0.180  Sum_probs=63.0

Q ss_pred             CCCCcCCcc----CCcCCCCCCCccEEEccCCcccc----cCC---------ccccCCCCCCEEEccCCcCCc----cCC
Q 042227            1 LSRSLLNGT----IPPSMSEMKNFSFLDLSNNILSG----EIP---------SNWEGLEELMVKDLSNNSLSG----GIP   59 (244)
Q Consensus         1 Ls~N~l~~~----ip~~l~~l~~L~~L~l~~N~l~~----~~p---------~~~~~l~~L~~L~L~~n~l~~----~~p   59 (244)
                      |++|.++..    +...+...++|++|++++|.++.    .+.         ......+.|+.+++++|.++.    .+.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            345555432    22334456777777777775431    000         011234556666666665542    122


Q ss_pred             cccCCCCCCcEEEccCCCCCCc-----hhhhccCCCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCC
Q 042227           60 ASFCSLPSLVWLKLSKNDLSGE-----LFVALQNCTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        60 ~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      ..+...+.|+.|++++|+++..     +...+..+++|+.|+++.|.++..    +...+..+++|++|++++|.++
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            2334445566666666665431     223345555666666666554321    2233445556666666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.2e-09  Score=92.98  Aligned_cols=109  Identities=23%  Similarity=0.275  Sum_probs=75.7

Q ss_pred             CccEEEccCCccccc-CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCCc----hhhhccC-
Q 042227           19 NFSFLDLSNNILSGE-IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSGE----LFVALQN-   88 (244)
Q Consensus        19 ~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~-   88 (244)
                      +|++||+++|++++. +.+.+..+++++.|+|++|.++.    .++..+..+++|++|+|++|+++..    +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            578888888888752 23345567888888888888772    3455667788888888888887632    2233322 


Q ss_pred             CCCCceecCCCCCCCCC----CCcccCCCCCCCeecCCCCCCC
Q 042227           89 CTAFTGFPEFITEPSGR----IPENIGSLQKLETLDLSSNHLS  127 (244)
Q Consensus        89 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  127 (244)
                      ..+|+.|+++.|.++..    ++..+..+++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            34688888888877643    3455677788888888888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.1e-09  Score=81.51  Aligned_cols=104  Identities=21%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCEEEccCCcCCccCCcccCCCCCCcEEEccCCCCCCc--hhhhccCCCCCceecC
Q 042227           20 FSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGGIPASFCSLPSLVWLKLSKNDLSGE--LFVALQNCTAFTGFPE   97 (244)
Q Consensus        20 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~l   97 (244)
                      .+.|+++++...   + .+..+..+..++..++... .++..+..+++|++|++++|+++..  ++..+..+++|+.|++
T Consensus        24 ~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            344555544322   1 2333333444444443332 3344444566777777777777642  2334445555555555


Q ss_pred             CCCCCCCCCCcccCCCCCCCeecCCCCCCCC
Q 042227           98 FITEPSGRIPENIGSLQKLETLDLSSNHLSG  128 (244)
Q Consensus        98 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~  128 (244)
                      ++|.++...+-.+.+...|+.|++++|.++.
T Consensus        99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          99 SGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             ccCccccchhhhhhhccccceeecCCCCcCc
Confidence            5555543211112223345556666665553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.7e-09  Score=80.48  Aligned_cols=106  Identities=21%  Similarity=0.126  Sum_probs=75.9

Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc--CCcccCCCCCCcEEEccCCCCCCchhhhccCCCC
Q 042227           14 MSEMKNFSFLDLSNNILSGEIPSNWEGLEELMVKDLSNNSLSGG--IPASFCSLPSLVWLKLSKNDLSGELFVALQNCTA   91 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~   91 (244)
                      +..+..+..++...+... .++..+..+++|++|++++|+|+..  ++..+..+++|+.|++++|.++...+-...+...
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred             hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccc
Confidence            333444444555555444 4455556789999999999999843  2355678899999999999998655444555667


Q ss_pred             CceecCCCCCCCCCCCc-------ccCCCCCCCeec
Q 042227           92 FTGFPEFITEPSGRIPE-------NIGSLQKLETLD  120 (244)
Q Consensus        92 L~~L~l~~n~l~~~~p~-------~~~~l~~L~~L~  120 (244)
                      |+.+++.+|.+......       .+..+++|+.||
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99999999998765443       256788899887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.1e-09  Score=93.10  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=88.5

Q ss_pred             CCCCCCccEEEccCCccccc----CCccccCCCCCCEEEccCCcCCccCC----cc-cCCCCCCcEEEccCCCCCCch--
Q 042227           14 MSEMKNFSFLDLSNNILSGE----IPSNWEGLEELMVKDLSNNSLSGGIP----AS-FCSLPSLVWLKLSKNDLSGEL--   82 (244)
Q Consensus        14 l~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~-~~~l~~L~~L~Ls~N~l~~~~--   82 (244)
                      ......++.+++++|.+...    ....+...+.++.+++++|.+++...    .. ......|+.+++++|.++...  
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~  330 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  330 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh
Confidence            44567788888888877642    12234556778888888887763211    11 123457888888888876543  


Q ss_pred             --hhhccCCCCCceecCCCCCCCCC----CCcccC-CCCCCCeecCCCCCCCCC----CccccCCCCceE-EEcccCCCc
Q 042227           83 --FVALQNCTAFTGFPEFITEPSGR----IPENIG-SLQKLETLDLSSNHLSGP----IPPSMSSMTRLS-LNLSYNDLT  150 (244)
Q Consensus        83 --~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~-L~ls~N~l~  150 (244)
                        ...+...++|++|++++|.+++.    +++.+. ..+.|++|++++|.++..    ++..+..+++|+ |++++|+++
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence              33445566788888888877542    233332 356688888888888732    344455667788 888888876


Q ss_pred             C
Q 042227          151 G  151 (244)
Q Consensus       151 ~  151 (244)
                      .
T Consensus       411 ~  411 (460)
T d1z7xw1         411 D  411 (460)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.13  E-value=4.6e-07  Score=67.21  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             CCCCccEEEccCC-ccccc----CCccccCCCCCCEEEccCCcCCc----cCCcccCCCCCCcEEEccCCCCCC
Q 042227           16 EMKNFSFLDLSNN-ILSGE----IPSNWEGLEELMVKDLSNNSLSG----GIPASFCSLPSLVWLKLSKNDLSG   80 (244)
Q Consensus        16 ~l~~L~~L~l~~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~   80 (244)
                      +.++|++|+|+++ .++..    +-..+...+.|+.|++++|.+..    .+.+.+...+.|+.|++++|.++.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            4567888888763 45432    22345566777888888777762    223344456677777777777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=1.2e-06  Score=64.86  Aligned_cols=110  Identities=11%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             cCCCCCCEEEccCC-cCCc----cCCcccCCCCCCcEEEccCCCCCC----chhhhccCCCCCceecCCCCCCCCC----
Q 042227           39 EGLEELMVKDLSNN-SLSG----GIPASFCSLPSLVWLKLSKNDLSG----ELFVALQNCTAFTGFPEFITEPSGR----  105 (244)
Q Consensus        39 ~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----  105 (244)
                      .+.++|+.|+|+++ .++.    .+...+...++|++|++++|.++.    .+...+...+.|+.|+++.|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999974 5652    234567778899999999999974    3456677788999999999988753    


Q ss_pred             CCcccCCCCCCCeecCCCCCCCCC-------CccccCCCCceE-EEcccCC
Q 042227          106 IPENIGSLQKLETLDLSSNHLSGP-------IPPSMSSMTRLS-LNLSYND  148 (244)
Q Consensus       106 ~p~~~~~l~~L~~L~ls~N~l~~~-------~p~~l~~l~~L~-L~ls~N~  148 (244)
                      +...+...+.|++|++++|.+...       +...+...+.|+ ++++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            234567778899999999876622       233445567777 8876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.73  E-value=3.7e-06  Score=61.89  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=46.6

Q ss_pred             CCCCCccEEEccC-Cccccc----CCccccCCCCCCEEEccCCcCCcc----CCcccCCCCCCcEEEccCCCCCCc----
Q 042227           15 SEMKNFSFLDLSN-NILSGE----IPSNWEGLEELMVKDLSNNSLSGG----IPASFCSLPSLVWLKLSKNDLSGE----   81 (244)
Q Consensus        15 ~~l~~L~~L~l~~-N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----   81 (244)
                      .+.+.|++|++++ +.++..    +-..+...++|+.|++++|.++..    +.+.+...++++.+++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3557777788876 445431    223445667777777777777532    233445566777777777777542    


Q ss_pred             hhhhccCCCCCce
Q 042227           82 LFVALQNCTAFTG   94 (244)
Q Consensus        82 ~~~~l~~l~~L~~   94 (244)
                      +...+...++|+.
T Consensus        94 l~~~l~~~~~L~~  106 (166)
T d1io0a_          94 LVEALQSNTSLIE  106 (166)
T ss_dssp             HHHGGGGCSSCCE
T ss_pred             HHHHHHhCccccE
Confidence            2234444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.53  E-value=8.9e-06  Score=59.76  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             ccCCCCCCEEEccC-CcCCc----cCCcccCCCCCCcEEEccCCCCCCc----hhhhccCCCCCceecCCCCCCCCC---
Q 042227           38 WEGLEELMVKDLSN-NSLSG----GIPASFCSLPSLVWLKLSKNDLSGE----LFVALQNCTAFTGFPEFITEPSGR---  105 (244)
Q Consensus        38 ~~~l~~L~~L~L~~-n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~---  105 (244)
                      ..+.++|+.|++++ +.++.    .+...+...++|++|++++|.++..    +...+...++++.+++..+.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999998 56762    2445667889999999999999753    445667789999999999887643   


Q ss_pred             -CCcccCCCCCCCe--ecCCCCCCCC----CCccccCCCCceE-EEcccCCC
Q 042227          106 -IPENIGSLQKLET--LDLSSNHLSG----PIPPSMSSMTRLS-LNLSYNDL  149 (244)
Q Consensus       106 -~p~~~~~l~~L~~--L~ls~N~l~~----~~p~~l~~l~~L~-L~ls~N~l  149 (244)
                       +...+...++|+.  |++++|.+..    .+...+...+.|+ |+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             3345677788886  4556777763    2444566678888 88877654