Citrus Sinensis ID: 042237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSGKDLSP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHEEEEEccccccccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccEEEEEEcccccccEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mfvrylstkpkpkmkpielkappeqtqTITRVIFDIVkehgpltvAETWERVQQAgvsgltgksHMKIVLRWMRERQKLRLICnhvgphkqflyttwftkpnnlnqaksgkdlsp
Flexible Loop (DISEMBL)
mfvrylstkpkpkmkpielkappeqtqTITRVIFDIVKEHGPLTVAETWERVQQagvsgltgkshMKIVLRWMRERQKLRLICNHVGPHKQFLyttwftkpnnlnqaksgkdlsp
Low Complexity Region (SEG)
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSGKDLSP
Disordered region (IsUnstruct)
***************************TITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTK***************
Disordered Region (DISOPRED)
**********************PEQTQTITRVIFDIVKEHGPLTVAETWERVQQAG****TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTW******************
Disordered Region (DISEMBL)
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQ*********
Disordered Region (DISPRO)
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKP**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSGKDLSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
449457514	122	PREDICTED: uncharacterized protein LOC10	0.913	0.860	0.820	2e-45
297792193	143	hypothetical protein ARALYDRAFT_357185 [	0.886	0.713	0.794	9e-44
15239880	145	uncharacterized protein [Arabidopsis tha	0.886	0.703	0.794	2e-43
21594042	139	unknown [Arabidopsis thaliana]	0.886	0.733	0.794	2e-43
224134202	106	predicted protein [Populus trichocarpa]	0.826	0.896	0.842	2e-40
225431279	121	PREDICTED: uncharacterized protein LOC10	0.965	0.917	0.776	1e-39
356552216	112	PREDICTED: uncharacterized protein LOC10	0.860	0.883	0.747	4e-39
388516503	125	unknown [Lotus japonicus]	0.939	0.864	0.666	4e-37
388512461	125	unknown [Lotus japonicus]	0.939	0.864	0.666	7e-37
414885724	292	TPA: hypothetical protein ZEAMMB73_03833	0.904	0.356	0.673	9e-37

>gi|449457514|ref|XP_004146493.1| PREDICTED: uncharacterized protein LOC101203168 [Cucumis sativus] gi|449521243|ref|XP_004167639.1| PREDICTED: uncharacterized protein LOC101228732 [Cucumis sativus]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 95/106 (89%), Gaps = 1/106 (0%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           VR  +TKPKPKMKPIELK PPEQTQTITR IFDIVKEHGPLT+AETW+RVQ+ G+ GLT 
Sbjct: 6   VRCFATKPKPKMKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWDRVQEVGLRGLTS 65

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAK 108
           K HMKIV+RWMRERQK+RL+CNHVGPHKQFLYTTWFTKP N  QAK
Sbjct: 66  KRHMKIVMRWMRERQKIRLMCNHVGPHKQFLYTTWFTKP-NFEQAK 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792193|ref|XP_002863981.1| hypothetical protein ARALYDRAFT_357185 [Arabidopsis lyrata subsp. lyrata] gi|297309816|gb|EFH40240.1| hypothetical protein ARALYDRAFT_357185 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
           M  R+ +TKPKPKMKPIEL  PPEQTQTITRVIFDI+K+HGPLT+AETW+RV++ G+ GL
Sbjct: 19  MLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGL 78

Query: 61  TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPN 102
           T K HMKI+LRWMRERQKL+LICNHVGPHKQFLYTTWFTK N
Sbjct: 79  TSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHN 120

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239880|ref|NP_199752.1| uncharacterized protein [Arabidopsis thaliana] gi|79330414|ref|NP_001032044.1| uncharacterized protein [Arabidopsis thaliana] gi|9759424|dbj|BAB09911.1| unnamed protein product [Arabidopsis thaliana] gi|51970274|dbj|BAD43829.1| unknown protein [Arabidopsis thaliana] gi|98960881|gb|ABF58924.1| At5g49410 [Arabidopsis thaliana] gi|332008424|gb|AED95807.1| uncharacterized protein [Arabidopsis thaliana] gi|332008425|gb|AED95808.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
           M  R+ +TKPKPKMKPIEL  PPEQTQTITRVIFDI+K+HGPLT+AETW+RV++ G+ GL
Sbjct: 19  MLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGL 78

Query: 61  TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPN 102
           T K HMKI+LRWMRERQKL+LICNHVGPHKQFLYTTWFTK N
Sbjct: 79  TSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHN 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594042|gb|AAM65960.1| unknown [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
           M  R+ +TKPKPKMKPIEL  PPEQTQTITRVIFDI+K+HGPLT+AETW+RV++ G+ GL
Sbjct: 13  MLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGL 72

Query: 61  TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPN 102
           T K HMKI+LRWMRERQKL+LICNHVGPHKQFLYTTWFTK N
Sbjct: 73  TSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHN 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134202|ref|XP_002327781.1| predicted protein [Populus trichocarpa] gi|222836866|gb|EEE75259.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 85/95 (89%)

Query: 14  MKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWM 73
           MKPIELK PPEQTQTITR IFDIVKEHGPLT+AETWE+VQ+ G+  LT K HMKIVLRWM
Sbjct: 1   MKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWEKVQEVGLRRLTSKRHMKIVLRWM 60

Query: 74  RERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAK 108
           RERQKL+LICNHVGPHKQFLYTTWFTKPN   QAK
Sbjct: 61  RERQKLKLICNHVGPHKQFLYTTWFTKPNFKLQAK 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431279|ref|XP_002275676.1| PREDICTED: uncharacterized protein LOC100267751 [Vitis vinifera] gi|297735090|emb|CBI17452.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 96/112 (85%), Gaps = 1/112 (0%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           +RYL+ KPKPK KPIELK PPEQT+T+TRVIFDIVKEHGPLT+A+TWE VQQ G+ GLT 
Sbjct: 6   IRYLAKKPKPKQKPIELKTPPEQTKTLTRVIFDIVKEHGPLTIADTWEHVQQVGLRGLTS 65

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSGKDLS 114
           K HMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWF K +N+NQ K     S
Sbjct: 66  KRHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFAK-SNVNQPKPANGSS 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552216|ref|XP_003544465.1| PREDICTED: uncharacterized protein LOC100306476 [Glycine max]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 86/99 (86%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           +R L+ KPKPKM P+ LK PPEQ QTITR +FDI+KEHGP+TVA TWERVQ+ G+  LT 
Sbjct: 6   IRCLAKKPKPKMGPVILKTPPEQRQTITRTLFDIIKEHGPITVANTWERVQEVGLKDLTS 65

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKP 101
           K+HMKIVL+WMRERQK+RL+CNHVG HKQFLYTTWFTKP
Sbjct: 66  KNHMKIVLKWMRERQKIRLLCNHVGAHKQFLYTTWFTKP 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516503|gb|AFK46313.1| unknown [Lotus japonicus]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 84/108 (77%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           +R L+ K KPKM PI +K PPEQ  TITRV+FDIVKEHGP++V +TWERV++ G+  L  
Sbjct: 6   IRCLAKKSKPKMGPIVMKTPPEQRATITRVLFDIVKEHGPISVPDTWERVKEVGLKDLKS 65

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSG 110
           K+HMKIVLRWMRERQKLRL+CNHVG HKQFLYTTWFT P        G
Sbjct: 66  KNHMKIVLRWMRERQKLRLVCNHVGAHKQFLYTTWFTNPGTAQATPGG 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512461|gb|AFK44292.1| unknown [Lotus japonicus]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 83/108 (76%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           +R L+ K KPKM PI +K PPEQ  TITRV+FDIVKEHGP++V  TWERV++ G+  L  
Sbjct: 6   IRCLAKKSKPKMGPIVMKTPPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKS 65

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQAKSG 110
           K+HMKIVLRWMRERQKLRL+CNHVG HKQFLYTTWFT P        G
Sbjct: 66  KNHMKIVLRWMRERQKLRLVCNHVGAHKQFLYTTWFTNPGTAQATPGG 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414885724|tpg|DAA61738.1| TPA: hypothetical protein ZEAMMB73_038339 [Zea mays]

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 82/104 (78%)

Query: 3   VRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTG 62
           VR+ + K KPKM PIEL APPEQ Q+ITR IFD V+EHGPLTV++ W+ V+  G+ GL  
Sbjct: 166 VRWAAKKGKPKMAPIELTAPPEQAQSITRAIFDAVREHGPLTVSDVWDHVKDVGLRGLAS 225

Query: 63  KSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNNLNQ 106
           K  MKI+LRWMRERQKL+LIC+H GPHKQFLYTTWFT P N  Q
Sbjct: 226 KRQMKIMLRWMRERQKLKLICDHDGPHKQFLYTTWFTNPRNAPQ 269

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2158034	145	AT5G49410 "AT5G49410" [Arabido	0.886	0.703	0.794	5e-44
TAIR|locus:2031481	151	AT1G73940 "AT1G73940" [Arabido	0.826	0.629	0.452	1.3e-20

TAIR|locus:2158034 AT5G49410 "AT5G49410" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query:     1 MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
             M  R+ +TKPKPKMKPIEL  PPEQTQTITRVIFDI+K+HGPLT+AETW+RV++ G+ GL
Sbjct:    19 MLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGL 78

Query:    61 TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPN 102
             T K HMKI+LRWMRERQKL+LICNHVGPHKQFLYTTWFTK N
Sbjct:    79 TSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHN 120

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031481 AT1G73940 "AT1G73940" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 43/95 (45%), Positives = 65/95 (68%)

Query:     1 MFVRYLSTKPKPKMKPIELKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGL 60
             + VRY+S +    ++ I  K P ++   I+  ++D+ K HGPL+V  TW R Q+AGVSGL
Sbjct:    29 LLVRYMSRERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSGL 88

Query:    61 TGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYT 95
               K+HMK++L+WMR ++ L+LICN VG  K+F +T
Sbjct:    89 NSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHT 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115       115   0.00091  102 3  11 22  0.47    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.43u 0.14s 13.57t   Elapsed:  00:00:01
  Total cpu time:  13.43u 0.14s 13.57t   Elapsed:  00:00:01
  Start:  Mon May 20 22:55:00 2013   End:  Mon May 20 22:55:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006364 "rRNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF05066	72	HARE-HTH: HB1, ASXL, restriction endonuclease HTH	96.38
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	92.59
PF11784	52	DUF3320: Protein of unknown function (DUF3320); In	86.08
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	85.16
PF06224	327	HTH_42: Winged helix DNA-binding domain; InterPro:	85.0
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	81.24
PF12932	118	Sec16: Vesicle coat trafficking protein Sec16 mid-	80.33

>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2

Probab=96.38  E-value=0.0059  Score=39.36  Aligned_cols=38  Identities=32%  Similarity=0.722  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhC-CcchHhHHHHHHHhccCCCCchhH
Q 042237           28 TITRVIFDIVKEHG-PLTVAETWERVQQAGVSGLTGKSH   65 (115)
Q Consensus        28 titr~l~dIvkeHG-PLTV~~tW~h~ke~g~~gL~SK~H   65 (115)
                      |+..+.+.||+++| |+|+.|.|+.+++.|+-.-.+|+=
T Consensus         2 t~~eaa~~vL~~~~~pm~~~eI~~~i~~~~~~~~~~k~p   40 (72)
T PF05066_consen    2 TFKEAAYEVLEEAGRPMTFKEIWEEIQERGLYKKSGKTP   40 (72)
T ss_dssp             -HHHHHHHHHHHH-S-EEHHHHHHHHHHHHTS---GGGG
T ss_pred             CHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCcccCCH
Confidence            57788999999998 999999999999998776555643

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.59  E-value=0.14  Score=38.86  Aligned_cols=27  Identities=30%  Similarity=0.668  Sum_probs=24.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhCCcchHhH
Q 042237           22 PPEQTQTITRVIFDIVKEHGPLTVAET   48 (115)
Q Consensus        22 p~eqa~titr~l~dIvkeHGPLTV~~t   48 (115)
                      -+||.+.|...|.+++++||.+|+.+-
T Consensus         6 T~eer~eLk~rIvElVRe~GRiTi~ql   32 (127)
T PF06163_consen    6 TPEEREELKARIVELVREHGRITIKQL   32 (127)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCccHHHH
Confidence            369999999999999999999999873

>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families

Probab=86.08  E-value=2  Score=27.05  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHHHhCCcchHhHHHHHHHh-ccCCCCc
Q 042237           24 EQTQTITRVIFDIVKEHGPLTVAETWERVQQA-GVSGLTG   62 (115)
Q Consensus        24 eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~-g~~gL~S   62 (115)
                      +-+..+++.|.+||..-|||..+..=.++.++ |++-+.+
T Consensus         8 ~~~~~L~~~i~~Iv~~EgPI~~~~L~~Ri~~a~G~~R~G~   47 (52)
T PF11784_consen    8 EYRPQLARMIRQIVEVEGPIHEDELARRIARAWGLSRAGS   47 (52)
T ss_pred             hHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHcCcccchH
Confidence            34567999999999999999999999999888 8876554

Many members are annotated as being putative DNA helicase-related proteins.

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=85.16  E-value=2.7  Score=29.42  Aligned_cols=53  Identities=25%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhH
Q 042237           19 LKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQK   78 (115)
Q Consensus        19 ~k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~   78 (115)
                      ++.-++++..+.+.|+|.+       ..+.++++.|.|++.+.....||-|-..+.+|-.
T Consensus        27 Lk~~~~~~~~~~q~l~~~~-------~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~   79 (141)
T PF03981_consen   27 LKAEGKEGKELEQALFDKF-------FEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLL   79 (141)
T ss_pred             HccccccHHHHHHHHHHHH-------HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHH
Confidence            4445578899999999987       5789999999999999999999999888888743

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

>PF06224 HTH_42: Winged helix DNA-binding domain; InterPro: IPR009351 This is a family of conserved bacterial proteins with unknown function

Probab=85.00  E-value=2.4  Score=33.23  Aligned_cols=59  Identities=32%  Similarity=0.503  Sum_probs=46.8

Q ss_pred             CCCChhHHHHHHHHHHHHHHHhCCcchHhHHHHHHHh---ccCCCCchhHHHHHHHHHHhhhHH
Q 042237           19 LKAPPEQTQTITRVIFDIVKEHGPLTVAETWERVQQA---GVSGLTGKSHMKIVLRWMRERQKL   79 (115)
Q Consensus        19 ~k~p~eqa~titr~l~dIvkeHGPLTV~~tW~h~ke~---g~~gL~SK~HMKi~LrWMreRq~l   79 (115)
                      .....++...++..|.+.|+++||+|-++.-+++.+.   +.++..  ...+.+|..|..+-.|
T Consensus        76 ~~~~~~~~~~~~~~v~~~L~~~gplt~~eL~~~l~~~~~~~~~~~~--~~~~~~l~~l~~~G~l  137 (327)
T PF06224_consen   76 LGLTPEELERLAEAVLDALRADGPLTRAELREALAEAGWWGWGGPS--SPWKHLLEYLWYRGLL  137 (327)
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCCHHHHHHHhhhccccCCCCCC--chHHHHHHHHHhCCeE
Confidence            4566778888999999999999999999999999888   343332  3677888888877544

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=81.24  E-value=1.2  Score=28.43  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=16.1

Q ss_pred             HHHHHHHHhC--CcchHhHHHHH
Q 042237           32 VIFDIVKEHG--PLTVAETWERV   52 (115)
Q Consensus        32 ~l~dIvkeHG--PLTV~~tW~h~   52 (115)
                      -|+||+..||  |+|.+|.=.++
T Consensus        10 gI~dii~~~g~~~ls~~eia~~l   32 (51)
T PF08100_consen   10 GIPDIIHNAGGGPLSLSEIAARL   32 (51)
T ss_dssp             THHHHHHHHTTS-BEHHHHHHTS
T ss_pred             CcHHHHHHcCCCCCCHHHHHHHc
Confidence            4899999998  99999874443

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []

Probab=80.33  E-value=2.1  Score=30.23  Aligned_cols=14  Identities=36%  Similarity=0.854  Sum_probs=10.7

Q ss_pred             hhHHHHHHHHHHhh
Q 042237           63 KSHMKIVLRWMRER   76 (115)
Q Consensus        63 K~HMKi~LrWMreR   76 (115)
                      |+|-|-+++|+.+|
T Consensus        67 ktkKkdV~kwl~~~   80 (118)
T PF12932_consen   67 KTKKKDVIKWLEEK   80 (118)
T ss_dssp             T--HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            89999999999765

Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	82.7

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=82.70  E-value=2.4  Score=25.82  Aligned_cols=50  Identities=14%  Similarity=0.253  Sum_probs=39.5

Q ss_pred             HHHHHHHHHh--CCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHh
Q 042237           31 RVIFDIVKEH--GPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLI   82 (115)
Q Consensus        31 r~l~dIvkeH--GPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~   82 (115)
                      ..|+++|.++  ||+|+.+.++.+++.+. ++ |+.=.-..|+.|.+...|+.+
T Consensus        20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~-~i-s~~TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A           20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE-EI-GLATVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHHHTSGGGSSBCHHHHHHHHHHTTC-CC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CC-CHhhHHHHHHHHHHCCCeEEE
Confidence            4578888877  79999999999988743 33 677778888889888887643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	83.61
d1p6ra_	82	Penicillinase repressor BlaI {Bacillus licheniform	81.16

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=83.61  E-value=0.49  Score=27.81  Aligned_cols=37  Identities=5%  Similarity=0.300  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHH
Q 042237           31 RVIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVL   70 (115)
Q Consensus        31 r~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~L   70 (115)
                      ..|+++|.+|||+|.++-   ++..|++-=+-.+|++.|.
T Consensus         9 ~~Il~~l~~~g~~sr~eL---a~~~glS~~Tv~~~l~~L~   45 (71)
T d1z05a1           9 GRVYKLIDQKGPISRIDL---SKESELAPASITKITRELI   45 (71)
T ss_dssp             HHHHHHHHHHCSBCHHHH---HHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCHHHH---HHHHCCCHHHHHHHHHHHH
Confidence            479999999999999875   6666777555555555544

>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Penicillinase repressor BlaI
species: Bacillus licheniformis [TaxId: 1402]

Probab=81.16  E-value=1.7  Score=26.70  Aligned_cols=61  Identities=15%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             HHHHHHHHhCCcchHhHHHHHHHhccCCCCchhHHHHHHHHHHhhhHHHHhhhccCCCcceeeeeccC
Q 042237           32 VIFDIVKEHGPLTVAETWERVQQAGVSGLTGKSHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFT   99 (115)
Q Consensus        32 ~l~dIvkeHGPLTV~~tW~h~ke~g~~gL~SK~HMKi~LrWMreRq~lkl~C~hvG~~k~FLyttw~~   99 (115)
                      .|.+||=++||+|+.+.-+.+.+.  .|+ +.+=.+-+|+=|-++..|.    +-...+.|+|++--+
T Consensus        13 ~IM~~lW~~~~~t~~ei~~~l~~~--~~~-~~tTv~T~L~rL~~KG~l~----~~k~gr~~~Y~p~is   73 (82)
T d1p6ra_          13 EVMKVIWKHSSINTNEVIKELSKT--STW-SPKTIQTMLLRLIKKGALN----HHKEGRVFVYTPNID   73 (82)
T ss_dssp             HHHHHHHTSSSEEHHHHHHHHHHH--SCC-CHHHHHHHHHHHHHTTSEE----EEEETTEEEEEESCS
T ss_pred             HHHHHHHhCCCCCHHHHHHHhccc--cCC-cHhHHHHHHHHHHHCCCeE----EEecCCeEEEEecCC
Confidence            578888899999999999999874  343 4566777787788877765    445667899987544