Citrus Sinensis ID: 042240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MQRVVESVYKSKMGKQKSPNGNVSPLMKYWSSSSTSSSSSSSRSALSMGPFSPVPIMSKSNSGSSSSHLSAVDEEDVYVMDGLPIMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHSMKASVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKDVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccEEccccccccccccccccccccccccccccEEEEccccccccccEcccccccEcccHHHHHHcccccccccEEEEccccEEccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
MQRVVESVYKSkmgkqkspngnvsplmkywsssstsssssssrsalsmgpfspvpimsksnsgsssshlsavdeedvyvmdglpimryspspspspspsssssssssskteLCRSReevgmcrfgtkcqfahgkeelrstlfpttknksevmtdSALVLTIQMedhsmkasvcespvtpvtfkprltntaikpehtrkTTALVNKDVqsratstssrdnwspqddgievtlpchpsktppr
Flexible Loop (DISEMBL)
mqrvvesvykskmgkqkspngnvsPLMKYWSSSSTSSSSSSSRSALSMGPFSPVPIMSKSNSGSSSSHLSAVDEEDVYVMDGLPIMRYSPSPSpspspssssssssssKTELCRSREEVGMCRFGtkcqfahgkeelrstlfpttknksevmTDSALVLTIQMEDHSMKASVCespvtpvtfkprltntaikpehtrkttalvnkdvqsratstssrdnwspqddgievtlpchpsktppr
Low Complexity Region (SEG)
MQRVVESVYKSKMGKQKSPNGNVSPLMKYWsssstsssssssrsalsMGPFSPVPIMsksnsgsssshlsAVDEEDVYVMDGLPIMRYspspspspspssssssssssKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHSMKASVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKDVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPR
Disordered region (IsUnstruct)
*****************************************************************************YV***************************************VGMCRFGTKCQFAHGK******L*************SALVLTIQ*******************************************************************************
Disordered Region (DISOPRED)
***************************************************************************************************************LCRSREEVGMCRFGTKCQFAHGKEEL********************************************************************************************************
Disordered Region (DISEMBL)
*******************NGNVSPLMKY*******************GPFSPVPIMS************AVDEEDVYVMDGLPIMRYS***************************EEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHSMKASVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNK*****************QDDGIEVTLPCHPSKTPPR
Disordered Region (DISPRO)
*QRVVESVYKSKMGKQKSP****SPL*******************************************************************************SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQME*****************************************************DNWSPQDDGIEVTLPCH*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQRVVESVYKSKMGKQKSPNGNVSPLMKYWSSSSTSSSSSSSRSALSMGPFSPVPIMSKSNSGSSSSHLSAVDEEDVYVMDGLPIMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHSMKASVCESPVTPVTFKPRLTNTAIKPEHTRKTTALVNKDVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTPPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
P23950	338	Zinc finger protein 36, C	no	no	0.174	0.124	0.619	8e-08
P17431	338	Zinc finger protein 36, C	yes	no	0.174	0.124	0.619	8e-08
Q07352	338	Zinc finger protein 36, C	yes	no	0.174	0.124	0.595	2e-07
P47980	436	Protein TIS11 OS=Drosophi	yes	no	0.186	0.103	0.533	2e-07
Q7ZXW9	363	Zinc finger protein 36, C	N/A	no	0.149	0.099	0.638	7e-07
Q805B4	364	Zinc finger protein 36, C	N/A	no	0.149	0.098	0.638	8e-07
A4IIN5	333	Zinc finger protein 36, C	no	no	0.128	0.093	0.638	9e-07
P23949	367	Zinc finger protein 36, C	no	no	0.170	0.111	0.609	9e-07
P47974	494	Zinc finger protein 36, C	no	no	0.149	0.072	0.638	1e-06
P47973	320	Tristetraprolin OS=Rattus	no	no	0.124	0.093	0.7	3e-06

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 98  PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           P S   +SS  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 105 PGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146

Probable regulatory protein involved in regulating the response to growth factors.
Mus musculus (taxid: 10090)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 98  PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           P S   +SS  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 105 PGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 28/42 (66%)

Query: 98  PSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           P     +SS  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 105 PGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146

Probable regulatory protein involved in regulating the response to growth factors.

Homo sapiens (taxid: 9606)

>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 96  PSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRST 140
           P P     ++S  KTELCR  EE G C++G KCQFAHG  ELR+ 
Sbjct: 124 PLPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNV 168

Drosophila melanogaster (taxid: 7227)

>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           +S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 128 NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRS 163

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           +S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 130 NSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRS 165

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           +S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 98  NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRS 133

Required for tubulogenesis during pronephros development.

Xenopus tropicalis (taxid: 8364)

>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 29/41 (70%)

Query: 99  SSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           S S  +S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 118 SGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 158

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Mus musculus (taxid: 10090)

>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           +S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 150 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 185

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Homo sapiens (taxid: 9606)

>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 23/30 (76%)

Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
           KTELCR+  E G CR+G KCQFAHG  ELR
Sbjct: 98  KTELCRTYSESGRCRYGAKCQFAHGPGELR 127

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
449462413	312	PREDICTED: uncharacterized protein LOC10	0.767	0.592	0.334	2e-15
147795077	300	hypothetical protein VITISV_026075 [Viti	0.630	0.506	0.344	1e-11
255577092	353	conserved hypothetical protein [Ricinus	0.323	0.220	0.5	7e-09
393218795	914	hypothetical protein FOMMEDRAFT_155406 [	0.207	0.054	0.6	3e-08
390604243	814	hypothetical protein PUNSTDRAFT_117353 [	0.174	0.051	0.642	4e-08
308801741	276	CCCH-type Zn-finger protein (ISS) [Ostre	0.257	0.224	0.562	5e-08
395334078	750	hypothetical protein DICSQDRAFT_150954 [	0.190	0.061	0.586	7e-08
392597123	654	hypothetical protein CONPUDRAFT_78791 [C	0.199	0.073	0.589	8e-08
302694935	735	hypothetical protein SCHCODRAFT_80684 [S	0.224	0.073	0.545	9e-08
111226448	437	hypothetical protein DDB_G0285973 [Dicty	0.136	0.075	0.696	1e-07

>gi|449462413|ref|XP_004148935.1| PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus] gi|449506415|ref|XP_004162743.1| PREDICTED: uncharacterized LOC101215865 [Cucumis sativus]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 109/233 (46%), Gaps = 48/233 (20%)

Query: 26  LMKYWSSSSTSSSSSSSRSA-LSMGPFSPV------PIMSKSNSGSSSSHLSAVDEEDVY 78
           +M +++SS++ S+S  SR A LS+ P S +      PI S    G+       VDEE V 
Sbjct: 58  IMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPM----KVDEE-VI 112

Query: 79  VMDGLPIMRYSPSPSPSPSPSSSSSSSSSS---KTELCRSREEVGMCRFGTKCQFAHGKE 135
           VMDG+ I           SP  S S        ++++CR  E+ G CRFG KCQFAHGKE
Sbjct: 113 VMDGILISSIHGEAKTVRSPLDSGSGGGGKNQYRSDICRYWEDSGTCRFGNKCQFAHGKE 172

Query: 136 ELRSTLFPT-TKNK-----------SEVMTDSALVLTIQ----MEDHSMKASVCESPVTP 179
           +LR    P  TK K           +  +T  A   T Q    + D   K  + +  +TP
Sbjct: 173 DLRPGRLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 232

Query: 180 VTFKPRLTNTAIKPEHTRKTTALVNKDVQSRATSTSSRDNWSPQDDGIEVTLP 232
                  T++ +K  HT     L+         ST S  NWSP+DDGI++ +P
Sbjct: 233 -------TSSTLKG-HTNNNPTLI---------STISIINWSPEDDGIKIAVP 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795077|emb|CAN60857.1| hypothetical protein VITISV_026075 [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 89/180 (49%), Gaps = 28/180 (15%)

Query: 74  EEDVYVMDGLPI--------MRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFG 125
           EEDV VMDG+ +        MR   S S   S ++++S +   KTE+CRS E++  CR+G
Sbjct: 97  EEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICRSWEDLASCRYG 156

Query: 126 TKCQFAHGKEELRSTLFPT-TKNKSEVMTDSALVLTIQME-----DHSMKASVCESPVTP 179
            KCQFAHGKEELR   +   T+ +  V    A+  T          H +++ +  +  TP
Sbjct: 157 AKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQIQSLLSTTQQTP 216

Query: 180 VTFKPRLTNTAIKPEHTRKTTALVNKDVQSRATSTSSRDNWSPQDDGIEVTLPCHPSKTP 239
                    +  +P+HT   T          AT T +  +WSP DDGIEV LP   ++ P
Sbjct: 217 ---------SPSRPQHTAAXTP-----TIKTATPTKTTADWSPMDDGIEVVLPGSSAEKP 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577092|ref|XP_002529430.1| conserved hypothetical protein [Ricinus communis] gi|223531107|gb|EEF32956.1| conserved hypothetical protein [Ricinus communis]

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 72  VDEEDVYVMDGLPIMRYSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFA 131
           V ++DV VMDG+ ++    S       SS S    S K ELCRS E  G CR+ +KCQFA
Sbjct: 111 VMDDDVLVMDGI-LVESKGSRVSRYLISSDSGGGLSYKMELCRSFENFGHCRYASKCQFA 169

Query: 132 HGKEELRSTLFPTTKNKSEV 151
           HGKEELR T     KNK EV
Sbjct: 170 HGKEELRPT-SSNMKNKPEV 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|393218795|gb|EJD04283.1| hypothetical protein FOMMEDRAFT_155406 [Fomitiporia mediterranea MF3/22]

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query: 89  SPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
           SPSP  S  PS+++      KTELCRS EE G CR+G KCQFAHG+EE+R
Sbjct: 560 SPSPPNSTGPSANNRKLGLYKTELCRSWEEKGTCRYGPKCQFAHGEEEIR 609

Source: Fomitiporia mediterranea MF3/22

Species: Fomitiporia mediterranea

Genus: Fomitiporia

Family: Hymenochaetaceae

Order: Hymenochaetales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|390604243|gb|EIN13634.1| hypothetical protein PUNSTDRAFT_117353 [Punctularia strigosozonata HHB-11173 SS5]

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 97  SPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
            PS+++      KTELCRS EE G CR+GTKCQFAHG+EELR
Sbjct: 493 GPSANNRKLGLYKTELCRSWEEKGTCRYGTKCQFAHGEEELR 534

Source: Punctularia strigosozonata HHB-11173 SS5

Species: Punctularia strigosozonata

Genus: Punctularia

Family: Punctulariaceae

Order: Corticiales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|308801741|ref|XP_003078184.1| CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] gi|116056635|emb|CAL52924.1| CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri]

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 88  YSPSPSPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKN 147
           Y   PS SPS  S     S  KTELCRS EE G CR+G+KCQFAHG++ELR  L    K 
Sbjct: 89  YGQHPS-SPSTGSPKQQHSLYKTELCRSWEESGTCRYGSKCQFAHGRDELRPVLR-HPKY 146

Query: 148 KSEV 151
           K+EV
Sbjct: 147 KTEV 150

Source: Ostreococcus tauri

Species: Ostreococcus tauri

Genus: Ostreococcus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|395334078|gb|EJF66454.1| hypothetical protein DICSQDRAFT_150954 [Dichomitus squalens LYAD-421 SS1]

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 93  SPSPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
           +P   PS+++      KTELCRS EE G CR+G KCQFAHG+EELR
Sbjct: 418 NPGNGPSANNRKLGLYKTELCRSWEEKGTCRYGAKCQFAHGEEELR 463

Source: Dichomitus squalens LYAD-421 SS1

Species: Dichomitus squalens

Genus: Dichomitus

Family: Polyporaceae

Order: Polyporales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|392597123|gb|EIW86445.1| hypothetical protein CONPUDRAFT_78791 [Coniophora puteana RWD-64-598 SS2]

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 8/56 (14%)

Query: 91  SPSPSPSPSSSSSSSSSS-------KTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           +P+PS +PSS+ S  S++       KTELCRS EE G CR+GTKCQFAHG+ ELRS
Sbjct: 332 APAPS-APSSNGSGPSANNRKLGLYKTELCRSWEEKGTCRYGTKCQFAHGEGELRS 386

Source: Coniophora puteana RWD-64-598 SS2

Species: Coniophora puteana

Genus: Coniophora

Family: Coniophoraceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|302694935|ref|XP_003037146.1| hypothetical protein SCHCODRAFT_80684 [Schizophyllum commune H4-8] gi|300110843|gb|EFJ02244.1| hypothetical protein SCHCODRAFT_80684 [Schizophyllum commune H4-8]

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 97  SPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEV 151
            PS+++      KTELCRS EE G CR+G KCQFAHG+EELR T+    K K+E+
Sbjct: 422 GPSANNRKLGLYKTELCRSWEEKGTCRYGAKCQFAHGEEELR-TVQRHPKYKTEI 475

Source: Schizophyllum commune H4-8

Species: Schizophyllum commune

Genus: Schizophyllum

Family: Schizophyllaceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|111226448|ref|XP_637949.2| hypothetical protein DDB_G0285973 [Dictyostelium discoideum AX4] gi|90970577|gb|EAL64445.2| hypothetical protein DDB_G0285973 [Dictyostelium discoideum AX4]

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 29/33 (87%)

Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTL 141
           KTELCRS +E G+CR+G KCQFAHG++ELRS +
Sbjct: 197 KTELCRSFQETGVCRYGLKCQFAHGRDELRSVM 229

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
DICTYBASE|DDB_G0285973	437	DDB_G0285973 "Butyrate respons	0.170	0.093	0.595	3.9e-08
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.170	0.232	0.613	6.5e-07
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.170	0.198	0.613	2.7e-06
ZFIN|ZDB-GENE-030131-6366	336	zgc:162730 "zgc:162730" [Danio	0.170	0.122	0.571	4.4e-06
UNIPROTKB|F1LVT2	490	F1LVT2 "Uncharacterized protei	0.170	0.083	0.642	6.3e-06
UNIPROTKB|A4IIN5	333	zfp36l2 "Zinc finger protein 3	0.170	0.123	0.613	8.1e-06
UNIPROTKB|Q7ZXW9	363	zfp36l2-A "Zinc finger protein	0.170	0.112	0.613	9.6e-06
MGI|MGI:107945	367	Zfp36l2 "zinc finger protein 3	0.170	0.111	0.613	9.8e-06
RGD|1559581	722	Zfp36l3 "zinc finger protein 3	0.170	0.056	0.642	1.1e-05
UNIPROTKB|A7MB98	338	ZFP36L1 "Uncharacterized prote	0.170	0.121	0.613	1.1e-05

DICTYBASE|DDB_G0285973 DDB_G0285973 "Butyrate response factor 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 138 (53.6 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTL-FPTTKNKS 149
             KTELCRS +E G+CR+G KCQFAHG++ELRS +  P  K ++
Sbjct:   197 KTELCRSFQETGVCRYGLKCQFAHGRDELRSVMRHPKYKTET 238

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:    94 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP--KYKTEL 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:   122 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP--KYKTEL 163

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6366 zgc:162730 "zgc:162730" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSE 150
             KTELCRS +E G C++G KCQFAHG+ ELR  L+   K K++
Sbjct:   114 KTELCRSFQEHGSCKYGAKCQFAHGENELRG-LYRHPKYKTQ 154

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1LVT2 F1LVT2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 27/42 (64%), Positives = 29/42 (69%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSE 150
             KTELCR  EE G CR+G KCQFAHG  ELR TL    K K+E
Sbjct:   143 KTELCRPFEENGTCRYGNKCQFAHGYHELR-TLSRHPKYKTE 183

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=IEA

UNIPROTKB|A4IIN5 zfp36l2 "Zinc finger protein 36, C3H1 type-like 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 123 (48.4 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:   103 KTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHP--KYKTEL 144

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

UNIPROTKB|Q7ZXW9 zfp36l2-A "Zinc finger protein 36, C3H1 type-like 2-A" [Xenopus laevis (taxid:8355)]

 Score = 123 (48.4 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:   133 KTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHP--KYKTEL 174

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

MGI|MGI:107945 Zfp36l2 "zinc finger protein 36, C3H type-like 2" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:   128 KTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHP--KYKTEL 169

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1559581 Zfp36l3 "zinc finger protein 36, C3H type-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 27/42 (64%), Positives = 29/42 (69%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSE 150
             KTELCR  EE G CR+G KCQFAHG  ELR TL    K K+E
Sbjct:   123 KTELCRPFEENGTCRYGNKCQFAHGYHELR-TLSRHPKYKTE 163

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISO

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0017091 "AU-rich element binding" evidence=ISO

UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query:   109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS-TLFPTTKNKSEV 151
             KTELCR  EE G C++G KCQFAHG  ELRS T  P  K K+E+
Sbjct:   116 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP--KYKTEL 157

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	7e-07
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 109 KTELCRSREEVGMCRFGTKCQFAHGK 134
           KTELCR     G C++G +C+FAHG+
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 107 SSKTELCRSREEVGMCRFGTKCQFAHGK 134
             KTELC+   + G C  G +C+FAH  
Sbjct: 1   KYKTELCK-FFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 31  SSSSTSSSSSSSRSALSMGPFSPVPIMSKSNSGSSSSHLSAVDEEDVYVMDGLPIMRYSP 90
           SSS    S S S S+   GP    P  S S+S S  S  S+              +   P
Sbjct: 288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSE--SSRGAAVSPGP 345

Query: 91  SPSPSPSPSSSSSSSSSS 108
           SPS SPSPS     +  S
Sbjct: 346 SPSRSPSPSRPPPPADPS 363

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.58
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.98
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.97
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.82
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.57
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.45
smart00356	27	ZnF_C3H1 zinc finger.	98.24
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.96
KOG1040	325	consensus Polyadenylation factor I complex, subuni	96.94
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.83
KOG1763	343	consensus Uncharacterized conserved protein, conta	96.82
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	96.69
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	95.82
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	95.51
smart00356	27	ZnF_C3H1 zinc finger.	94.86
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	94.8
KOG2185	486	consensus Predicted RNA-processing protein, contai	94.25
COG5152	259	Uncharacterized conserved protein, contains RING a	93.83
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	92.63
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	91.56
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	91.37
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	89.66
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	85.61
KOG1040	325	consensus Polyadenylation factor I complex, subuni	85.29
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	84.0

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.58  E-value=9.7e-16  Score=139.25  Aligned_cols=76  Identities=28%  Similarity=0.454  Sum_probs=66.1

Q ss_pred             CCCCCCCcchhhccccccCCcCCC-CCCccccCCccccc------cCCCCCCCCccccccccccccCCCCCC--CCcCcc
Q 042240          101 SSSSSSSSKTELCRSREEVGMCRF-GTKCQFAHGKEELR------STLFPTTKNKSEVMTDSALVLTIQMED--HSMKAS  171 (241)
Q Consensus       101 ~~~~~~~yKT~LCr~f~~~G~C~y-GdkC~FAHG~~ELr------~~~~~p~~yKTklCk~F~~~G~CpyG~--rf~H~~  171 (241)
                      .......|||.||+.|...|.|+| |++|+|||+.+|++      ....++ +|||++|.+|...|+|+||.  +|+|..
T Consensus       123 ~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~-~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  123 GERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPP-KYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             cccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCC-CCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            456778999999999999999999 99999999999999      333445 99999999999999999996  488988


Q ss_pred             ccCCCC
Q 042240          172 VCESPV  177 (241)
Q Consensus       172 ~s~~~~  177 (241)
                      .+...+
T Consensus       202 ~~~~~~  207 (332)
T KOG1677|consen  202 PEDRAS  207 (332)
T ss_pred             cccccc
Confidence            765543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.98  E-value=2.4e-10  Score=106.37  Aligned_cols=64  Identities=19%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             CCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCC-CCCccccccccccccCCCCCCC
Q 042240          103 SSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPT-TKNKSEVMTDSALVLTIQMEDH  166 (241)
Q Consensus       103 ~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p-~~yKTklCk~F~~~G~CpyG~r  166 (241)
                      ...++|||+.|.+|+..|+|+||.||.|+||.+++....+++ ..|+...|+.|..+|.||+|.+
T Consensus       267 ~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~  331 (351)
T COG5063         267 KKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGA  331 (351)
T ss_pred             ccccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCc
Confidence            456899999999999999999999999999999988776554 4799999999999999999985

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.97  E-value=2.9e-10  Score=105.86  Aligned_cols=73  Identities=27%  Similarity=0.354  Sum_probs=63.8

Q ss_pred             CCCCCCCcch--hhccccccCCcCCC---CCCcccc---CCccccccCCCCCCCCccccccccccccCCCCCCC--CcCc
Q 042240          101 SSSSSSSSKT--ELCRSREEVGMCRF---GTKCQFA---HGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKA  170 (241)
Q Consensus       101 ~~~~~~~yKT--~LCr~f~~~G~C~y---GdkC~FA---HG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~  170 (241)
                      ..+....|||  +||.-|...|.|+|   |++|+||   ||..||....... .|||++|.+|..-|+|+||.|  |.|.
T Consensus       219 ~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~-~frTePcinwe~sGyc~yg~Rc~F~hg  297 (351)
T COG5063         219 QEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQ-NFRTEPCINWEKSGYCPYGLRCCFKHG  297 (351)
T ss_pred             hhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccccccc-ccccCCccchhhcccCccccccccccC
Confidence            3577889999  99999999999999   9999999   9999998766443 899999999999999999986  6676


Q ss_pred             cccC
Q 042240          171 SVCE  174 (241)
Q Consensus       171 ~~s~  174 (241)
                      ..+.
T Consensus       298 d~~~  301 (351)
T COG5063         298 DDSD  301 (351)
T ss_pred             Chhh
Confidence            6544

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.82  E-value=6.4e-10  Score=68.93  Aligned_cols=27  Identities=56%  Similarity=1.075  Sum_probs=22.7

Q ss_pred             cchhhccccccCCcCCCCCCccccCCc
Q 042240          108 SKTELCRSREEVGMCRFGTKCQFAHGK  134 (241)
Q Consensus       108 yKT~LCr~f~~~G~C~yGdkC~FAHG~  134 (241)
                      |||++|++|...|.|+||++|.|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            799999999999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.57  E-value=2.9e-08  Score=90.54  Aligned_cols=42  Identities=31%  Similarity=0.732  Sum_probs=37.9

Q ss_pred             CCCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCC
Q 042240          102 SSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFP  143 (241)
Q Consensus       102 ~~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~  143 (241)
                      .....+|||+||.+|...|.|+||.+|+|+|+..|++.....
T Consensus       169 ~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~  210 (332)
T KOG1677|consen  169 VGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRH  210 (332)
T ss_pred             hcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccC
Confidence            456789999999999999999999999999999999987643

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.45  E-value=2.6e-07  Score=91.16  Aligned_cols=64  Identities=14%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCCC-cCccc
Q 042240          102 SSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDHS-MKASV  172 (241)
Q Consensus       102 ~~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~rf-~H~~~  172 (241)
                      ..++-.|--..|..|. +|.|..||.|+||||.-|-+.   ||..|||++|+   .+|+|+.--+| .|...
T Consensus       228 DPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEcwL---HPa~YRT~~Ck---Dg~~C~RrvCfFAH~~e  292 (528)
T KOG1595|consen  228 DPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFECWL---HPARYRTRKCK---DGGYCPRRVCFFAHSPE  292 (528)
T ss_pred             CcccccccCccCcccc-cCCCCCCCccccccceehhhc---CHHHhcccccc---CCCCCccceEeeecChH
Confidence            4667788889999999 599999999999999999885   45799999999   67999996554 45443

>smart00356 ZnF_C3H1 zinc finger

Probab=98.24  E-value=5.3e-07  Score=54.18  Aligned_cols=27  Identities=44%  Similarity=0.925  Sum_probs=24.2

Q ss_pred             CcchhhccccccCCcCCCCCCccccCCc
Q 042240          107 SSKTELCRSREEVGMCRFGTKCQFAHGK  134 (241)
Q Consensus       107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~  134 (241)
                      .+|+.+|+.| ..|.|++|++|+|+|+.
T Consensus         1 ~~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        1 KYKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            3789999999 58999999999999973

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.96  E-value=3.2e-06  Score=83.54  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=51.4

Q ss_pred             chhhccccccC--CcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCC--CCCcCccc
Q 042240          109 KTELCRSREEV--GMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQME--DHSMKASV  172 (241)
Q Consensus       109 KT~LCr~f~~~--G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG--~rf~H~~~  172 (241)
                      +..||......  ..|.||++|+|-|+.+.+..+..+   ....-|+.|...|+||||  +||+.++.
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~---Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl  139 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP---DIGPSCPVFESLGFCPYGFKCRFLGAHL  139 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCc---ccCCccceeeccccCCccceeehhhccc
Confidence            57899999876  589999999999999999998753   356789999999999999  57875443

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=96.94  E-value=0.00038  Score=65.76  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCccccccCCCC---------------C-----CCCccccccccccccCCCCCC
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFP---------------T-----TKNKSEVMTDSALVLTIQMED  165 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~---------------p-----~~yKTklCk~F~~~G~CpyG~  165 (241)
                      ...++.+|++|. .|.|..||.|.|+|.. +|.....-               +     -.-+-+.|+ |...|+|+-|.
T Consensus        73 ~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~-~~~~g~c~~g~  149 (325)
T KOG1040|consen   73 DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCK-WYKEGFCRGGP  149 (325)
T ss_pred             ccCCceeehhhh-hhhhhccCcCcchhhh-hhcccccccccccccccccccCCcccCCChhhhhhccc-hhhhccCCCcc
Confidence            489999999999 6999999999999987 55433210               0     012334566 44677888776


Q ss_pred             CCcCcc
Q 042240          166 HSMKAS  171 (241)
Q Consensus       166 rf~H~~  171 (241)
                      .+.|..
T Consensus       150 ~c~~~h  155 (325)
T KOG1040|consen  150 SCKKRH  155 (325)
T ss_pred             hhhhhh
Confidence            655433

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.83  E-value=0.00028  Score=64.76  Aligned_cols=68  Identities=28%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             CCCcchhhccccccCCcCCCCCCccccCCccccccCCCC------------------CCCCcccccccccc------cc-
Q 042240          105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFP------------------TTKNKSEVMTDSAL------VL-  159 (241)
Q Consensus       105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~------------------p~~yKTklCk~F~~------~G-  159 (241)
                      ...-||..|..|. .+.|.-|+.|.|+|+.+|-|.+..+                  |-..-.++|++|..      +| 
T Consensus        80 gvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw  158 (299)
T COG5252          80 GVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGW  158 (299)
T ss_pred             ccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccc
Confidence            4567999999999 7999999999999999988876532                  11112368998764      23 


Q ss_pred             --CCCCCC-C--CcCcccc
Q 042240          160 --TIQMED-H--SMKASVC  173 (241)
Q Consensus       160 --~CpyG~-r--f~H~~~s  173 (241)
                        .||.|. +  .+|.+..
T Consensus       159 ~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         159 GWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeeCCCCCceeeeeeccCc
Confidence              799994 3  4576654

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=96.82  E-value=0.00029  Score=66.17  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=30.4

Q ss_pred             CCCcchhhccccccCCcCCCCCCccccCCccccccCC
Q 042240          105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTL  141 (241)
Q Consensus       105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~  141 (241)
                      ...-|+.+|.+|. .|.|.-|++|.|+|+...-|...
T Consensus        87 gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~e  122 (343)
T KOG1763|consen   87 GVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKE  122 (343)
T ss_pred             CCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhcc
Confidence            3567999999998 69999999999999988666544

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.69  E-value=0.0005  Score=42.45  Aligned_cols=24  Identities=13%  Similarity=-0.060  Sum_probs=17.9

Q ss_pred             CccccccccccccCCCCCC--CCcCc
Q 042240          147 NKSEVMTDSALVLTIQMED--HSMKA  170 (241)
Q Consensus       147 yKTklCk~F~~~G~CpyG~--rf~H~  170 (241)
                      ||+.+|+.|...|.|+||.  +|+|.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            6899999999999999996  47774

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=95.82  E-value=0.0049  Score=58.43  Aligned_cols=62  Identities=21%  Similarity=0.326  Sum_probs=44.4

Q ss_pred             CCCCCcch-hhccccccCCcCCCCCC-ccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCcc
Q 042240          103 SSSSSSKT-ELCRSREEVGMCRFGTK-CQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKAS  171 (241)
Q Consensus       103 ~~~~~yKT-~LCr~f~~~G~C~yGdk-C~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~  171 (241)
                      ++..++-| ++||.|+ .|.|..|++ |+|||-.+-+...     +-+-.-|..| ..|.|.... +|+|..
T Consensus        29 ~kd~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~-----~g~v~aC~Ds-~kgrCsR~nCkylHpp   93 (331)
T KOG2494|consen   29 VKDTKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQVS-----NGRVIACFDS-QKGRCSRENCKYLHPP   93 (331)
T ss_pred             ccccchhHHHHHHHHH-hccccCCCccccccCCCCCCCcc-----CCeEEEEecc-ccCccCcccceecCCC
Confidence            33334433 8999999 699999999 9999987744433     3455668766 578888774 588843

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=95.51  E-value=0.021  Score=57.12  Aligned_cols=59  Identities=20%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             CCCCCCCcchhhccccccCCcCCCCCCccccC-CccccccCCCCCCCCccccccccccccCCCCCC
Q 042240          101 SSSSSSSSKTELCRSREEVGMCRFGTKCQFAH-GKEELRSTLFPTTKNKSEVMTDSALVLTIQMED  165 (241)
Q Consensus       101 ~~~~~~~yKT~LCr~f~~~G~C~yGdkC~FAH-G~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~  165 (241)
                      +.-..-.|||+-|.    .+.|.=+-.|-||| |++.-|...+-- .|....|+.|. .|.|..|+
T Consensus       192 DeFrMy~fKir~C~----R~~shDwteCPf~HpgEkARRRDPRky-hYs~tpCPefr-kG~C~rGD  251 (528)
T KOG1595|consen  192 DEFRMYSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRKY-HYSSTPCPEFR-KGSCERGD  251 (528)
T ss_pred             cceEEEeeeecccC----CccCCCcccCCccCCCcccccCCcccc-cccCccCcccc-cCCCCCCC
Confidence            34556789999998    56999999999999 988777544322 57789999995 59999996

>smart00356 ZnF_C3H1 zinc finger

Probab=94.86  E-value=0.023  Score=33.70  Aligned_cols=23  Identities=13%  Similarity=-0.133  Sum_probs=19.4

Q ss_pred             CccccccccccccCCCCCCC--CcCc
Q 042240          147 NKSEVMTDSALVLTIQMEDH--SMKA  170 (241)
Q Consensus       147 yKTklCk~F~~~G~CpyG~r--f~H~  170 (241)
                      +|+.+|+.| ..|.|++|..  |+|.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            688999988 8999999964  6674

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=94.80  E-value=0.015  Score=33.45  Aligned_cols=19  Identities=32%  Similarity=0.786  Sum_probs=15.8

Q ss_pred             hccccccCCcCCCCCCccccCC
Q 042240          112 LCRSREEVGMCRFGTKCQFAHG  133 (241)
Q Consensus       112 LCr~f~~~G~C~yGdkC~FAHG  133 (241)
                      +|++|.   .|+++++|.|+|.
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            488765   4999999999994

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=94.25  E-value=0.018  Score=56.47  Aligned_cols=33  Identities=36%  Similarity=0.761  Sum_probs=26.6

Q ss_pred             chhhccccccCCcCCCCCCccccCCcc----ccccCCC
Q 042240          109 KTELCRSREEVGMCRFGTKCQFAHGKE----ELRSTLF  142 (241)
Q Consensus       109 KT~LCr~f~~~G~C~yGdkC~FAHG~~----ELr~~~~  142 (241)
                      -.+.|.+|. .|.|+||++|+|.||..    +||.-..
T Consensus       139 sMkpC~ffL-eg~CRF~enCRfSHG~~V~lsslr~yq~  175 (486)
T KOG2185|consen  139 SMKPCKFFL-EGRCRFGENCRFSHGLDVPLSSLRNYQQ  175 (486)
T ss_pred             hhccchHhh-ccccccCcccccccCcccchhhcccCCC
Confidence            347899999 69999999999999964    5665543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.83  E-value=0.021  Score=51.63  Aligned_cols=33  Identities=24%  Similarity=0.887  Sum_probs=28.3

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCccccc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELR  138 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr  138 (241)
                      ..|-...|+.|...|+|-|||.|.|.|..+++.
T Consensus       137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             eecCcccccchhhcccccCCchhhhhhhhhhhh
Confidence            346667899999999999999999999887554

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=92.63  E-value=0.35  Score=45.36  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             CCCCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240          104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS  139 (241)
Q Consensus       104 ~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~  139 (241)
                      ....+-...|++|. .|.|+-+..|.|+|+.+-++.
T Consensus        98 ~~~~~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s  132 (285)
T COG5084          98 NPVLSSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS  132 (285)
T ss_pred             CccccCCcccchhc-cccCcCCCccccccCCCcccc
Confidence            33368888999998 699999999999999876663

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=91.56  E-value=0.28  Score=45.51  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=17.2

Q ss_pred             ccccccCccccCCCCCCCCCCeEEE
Q 042240          206 DVQSRATSTSSRDNWSPQDDGIEVT  230 (241)
Q Consensus       206 ~~~~~~~~t~s~~~~~~~d~~ie~~  230 (241)
                      +-|..++.+.+...--|.|.|-||-
T Consensus       340 peqteapisktagsinpedsgseig  364 (377)
T KOG1492|consen  340 PEQTEAPISKTAGSINPEDSGSEIG  364 (377)
T ss_pred             cccccCCchhccCCCCccccccccc
Confidence            3455566666666677889998874

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=91.37  E-value=0.53  Score=44.13  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=47.5

Q ss_pred             hhhccccccCCcCCCCCCccccCCccccccCCCCCCCCcccccccccc--ccCCCCCCC--CcCccccC------CCCCC
Q 042240          110 TELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSAL--VLTIQMEDH--SMKASVCE------SPVTP  179 (241)
Q Consensus       110 T~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~--~G~CpyG~r--f~H~~~s~------~~~~p  179 (241)
                      +--|+.|...|.|..|..|.++|.+.          .-.-..|..|..  .+.||+|..  +-|.+...      +....
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp----------~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~~~p~~~y~  203 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDP----------DSFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYGSSPCGNYT  203 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCc----------ccccccccccCcccccccCCCCccccccccccccccccccccCc
Confidence            56699998899999999999999971          122345665543  899999975  44655422      33444


Q ss_pred             CccCCCcccc
Q 042240          180 VTFKPRLTNT  189 (241)
Q Consensus       180 ~~~rPkl~~s  189 (241)
                      ..+.|+.+.+
T Consensus       204 ~~fsP~g~~~  213 (285)
T COG5084         204 PPFSPPGTPS  213 (285)
T ss_pred             CCcCCCCCCc
Confidence            5556666553

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.66  E-value=0.12  Score=48.80  Aligned_cols=33  Identities=24%  Similarity=0.814  Sum_probs=29.4

Q ss_pred             CCCcchhhccccccCCcCCCCCCccccCCcccc
Q 042240          105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEEL  137 (241)
Q Consensus       105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~EL  137 (241)
                      ...|-..+|+.|..+|+|-||+.|.|-|....+
T Consensus       181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            456778899999999999999999999988866

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=85.61  E-value=0.57  Score=43.49  Aligned_cols=24  Identities=33%  Similarity=0.793  Sum_probs=20.1

Q ss_pred             hhccccccCCcCCCCCCccccCCc
Q 042240          111 ELCRSREEVGMCRFGTKCQFAHGK  134 (241)
Q Consensus       111 ~LCr~f~~~G~C~yGdkC~FAHG~  134 (241)
                      ..|++|..+|.|-.|..|+|.|..
T Consensus       207 vycryynangicgkgaacrfvhep  230 (377)
T KOG1492|consen  207 VYCRYYNANGICGKGAACRFVHEP  230 (377)
T ss_pred             eEEEEecCCCcccCCceeeeeccc
Confidence            358988888999999999998863

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=85.29  E-value=0.59  Score=44.47  Aligned_cols=65  Identities=12%  Similarity=0.216  Sum_probs=43.4

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCcc--ccccCCC------C--C----CCCccccccccccccCCCCCCC-CcCc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKE--ELRSTLF------P--T----TKNKSEVMTDSALVLTIQMEDH-SMKA  170 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~--ELr~~~~------~--p----~~yKTklCk~F~~~G~CpyG~r-f~H~  170 (241)
                      ..-|..-|.+|...|.|.-|.+|.|-|+.-  .+..-+-      .  +    ...+-.+|..| ..|.|+-|.. +.|.
T Consensus       101 ~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y-~~gfC~~g~q~c~~~  179 (325)
T KOG1040|consen  101 DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPY-NAGFCPKGPQRCDML  179 (325)
T ss_pred             hhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCch-hhhhccCCCCccccc
Confidence            455666799999999999999999999982  2221110      0  0    12233678855 6899999964 5543


Q ss_pred             c
Q 042240          171 S  171 (241)
Q Consensus       171 ~  171 (241)
                      .
T Consensus       180 h  180 (325)
T KOG1040|consen  180 H  180 (325)
T ss_pred             C
Confidence            3

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.00  E-value=0.43  Score=45.77  Aligned_cols=24  Identities=29%  Similarity=0.877  Sum_probs=22.2

Q ss_pred             hhccccccCCcCCCCCCccccCCcc
Q 042240          111 ELCRSREEVGMCRFGTKCQFAHGKE  135 (241)
Q Consensus       111 ~LCr~f~~~G~C~yGdkC~FAHG~~  135 (241)
                      .+|++|+ .|.|+||++|+|.|..-
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            7899999 79999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		8e-07
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		2e-06

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 5   KTELCRPFEESGTCKYGEKCQFAHGFHELRS 35

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEELR 138
           KTELCR+  E G CR+G KCQFAHG  ELR
Sbjct: 11  KTELCRTYSESGRCRYGAKCQFAHGLGELR 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-06
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	6e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 100 SSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELR 138
           S  ++SS  KTELCR+  E G CR+G KCQFAHG  ELR
Sbjct: 2   SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 95  SPSPSSSSSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEE 136
                  ++     KTELC   +  G C +G++C F H   E
Sbjct: 35  GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 111 ELCRSREEVGMCRFGTKCQFAHGKEELR 138
            +C  R   G C  G  C+FAHG  EL 
Sbjct: 21  SIC-DRYMNGTCPEGNSCKFAHGNAELH 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.73
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	99.13
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.84
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.51
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.46
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.42
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.38
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.75
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.44
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.77
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.66
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.64
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	96.39
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	95.08
2rhk_C	72	Cleavage and polyadenylation specificity factor su	94.92
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	94.51
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	88.47
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	88.16
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	85.75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.73  E-value=7.9e-19  Score=128.60  Aligned_cols=71  Identities=38%  Similarity=0.535  Sum_probs=36.4

Q ss_pred             CCCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCcccc
Q 042240          102 SSSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKASVC  173 (241)
Q Consensus       102 ~~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~~s  173 (241)
                      .+.+.+|||+||++|...|.|+||++|+|||+.+||+....++ .+||.+|+.|...|.|+||.+  |+|...+
T Consensus         4 ~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred             CCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3456799999999998889999999999999999999876666 899999999999999999975  6786643

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-12  Score=97.25  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=38.8

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCcccccccc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDS  155 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F  155 (241)
                      ...|++||++|. .|.|+||++|+||||++||+.-...+...|+++++..
T Consensus        16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar   64 (69)
T 2d9m_A           16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS   64 (69)
T ss_dssp             CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred             CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence            345779999995 7899999999999999999974433346777777743

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.05  E-value=1.1e-10  Score=90.75  Aligned_cols=52  Identities=19%  Similarity=0.256  Sum_probs=44.8

Q ss_pred             CCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCcc
Q 042240          104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKAS  171 (241)
Q Consensus       104 ~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~  171 (241)
                      ....+|++||++|. .|.|.+|++|.|+|+               +.+|+.|...|.|++|.+  |+|..
T Consensus         7 ~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~   60 (98)
T 2cqe_A            7 GELPKKRELCKFYI-TGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP   60 (98)
T ss_dssp             CCCSCCCSBCTTTT-TTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CCCCCCCccCcccc-cCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence            34568999999997 799999999999999               568998878999999964  67764

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=79.78  Aligned_cols=58  Identities=22%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CCCCCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCCC--CcCccc
Q 042240          103 SSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMEDH--SMKASV  172 (241)
Q Consensus       103 ~~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~~  172 (241)
                      .....+|+++|++|.. |.|.+|++|.|+|+....          ++.+|+.|...|.|. |.+  |+|...
T Consensus         3 p~~~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~-~~~C~f~H~~~   62 (77)
T 2d9n_A            3 SGSSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------KMPECYFYSKFGECS-NKECPFLHIDP   62 (77)
T ss_dssp             CCCSCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------TSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred             CCCCCCcceeCHhHcc-CcCCCCCCCCCccccccC----------cCCCCcccCCCCccC-CCCeeccCCCc
Confidence            3445789999999995 999999999999987632          456899887669999 764  678764

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.51  E-value=2.3e-08  Score=73.63  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=44.6

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV  172 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~  172 (241)
                      ...|+++|++|.. |.|.+|++|.|+|....          .++.+|+.|...|.|.+.. +|.|...
T Consensus        12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~----------~~~~~C~~f~~~G~C~~~~C~y~H~~p   68 (72)
T 2rhk_C           12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM----------TKMSECYFYSKFGECSNKECPFLHIDP   68 (72)
T ss_dssp             SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT----------TSCCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred             CCCcCeeCHHHhc-CCCCCCCCCCCcccccc----------ccCCcccccCCCCCCCCCCeeccCCCc
Confidence            4678999999995 99999999999998542          2567899886669999943 3677654

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.46  E-value=5.3e-08  Score=70.95  Aligned_cols=59  Identities=24%  Similarity=0.413  Sum_probs=48.0

Q ss_pred             cchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCcc
Q 042240          108 SKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKAS  171 (241)
Q Consensus       108 yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~  171 (241)
                      .|.++|+.|. .|.|..|+ .|.|+|..+++....   ...++.+|..| ..|.|..|. +|+|..
T Consensus         4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~~---~~~~~~vC~~f-lkG~C~r~~C~y~H~~   64 (70)
T 3d2q_A            4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMIDT---NDNTVTVCMDY-IKGRCSREKCKYFHPP   64 (70)
T ss_dssp             CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCBT---TTTEEEBCHHH-HTTCCCCTTCCSBCCC
T ss_pred             ccchhCHHHh-cCCCCCCCCCCCCccCcccccccc---cCCcceecccc-CcCCCCCCCcCeeCCH
Confidence            4778999997 79999999 699999998876432   25789999977 569999995 488854

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=6.6e-08  Score=75.23  Aligned_cols=67  Identities=22%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             CCCCCCCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240          101 SSSSSSSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV  172 (241)
Q Consensus       101 ~~~~~~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~  172 (241)
                      ........|.++|+.|.. |.|..|+ .|.|+|..++++...   ...++.+|..| ..|.|.+|. +|+|...
T Consensus        11 ~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~~---~~~~~~vC~~f-lkG~C~r~~C~y~H~~~   79 (98)
T 2e5s_A           11 TQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMIDT---SDNTVTVCMDY-IKGRCMREKCKYFHPPA   79 (98)
T ss_dssp             CCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCCT---TTCEEEBCHHH-HHTCCCCTTCCSBCCCH
T ss_pred             cccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccccc---cCCccccchhh-ccCCCCCCCcCccCChH
Confidence            344556778899999995 9999999 899999998876432   35788999976 679999995 5888553

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.38  E-value=4.1e-08  Score=71.37  Aligned_cols=32  Identities=38%  Similarity=0.804  Sum_probs=0.0

Q ss_pred             CCCcchhhccccccCCcCCCCCCccccCCccc
Q 042240          105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEE  136 (241)
Q Consensus       105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~E  136 (241)
                      ...+||++|++|...|.|+||++|+|+|+..|
T Consensus        45 ~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           45 HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             --------------------------------
T ss_pred             cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            45799999999998999999999999999876

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.75  E-value=1.1e-05  Score=61.09  Aligned_cols=60  Identities=22%  Similarity=0.341  Sum_probs=47.3

Q ss_pred             CCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCccc
Q 042240          106 SSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKASV  172 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~~  172 (241)
                      ...|.++|+.|.. |.|..|+ .|.|||....+...     ..+..+|..| ..|.|..+. +|+|...
T Consensus         5 ~~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----~~~~~vC~df-lkG~C~r~~C~y~H~~~   66 (83)
T 3d2n_A            5 KWLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----NGRVIACFDS-LKGRCSRENCKYLHPPP   66 (83)
T ss_dssp             GGGEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----TTEEECCHHH-HTTCCCCSSCSSCCCCH
T ss_pred             ccccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----CCceeehhHh-hhccccCCCcceeCChH
Confidence            3567899999995 9999997 99999998765432     3467899977 679999995 5888543

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.44  E-value=8.5e-05  Score=56.96  Aligned_cols=59  Identities=22%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             CCcchhhccccccCCcCCCCC-CccccCCccccccCCCCCCCCccccccccccccCCCCCC-CCcCcc
Q 042240          106 SSSKTELCRSREEVGMCRFGT-KCQFAHGKEELRSTLFPTTKNKSEVMTDSALVLTIQMED-HSMKAS  171 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGd-kC~FAHG~~ELr~~~~~p~~yKTklCk~F~~~G~CpyG~-rf~H~~  171 (241)
                      ...|.++|+.|+. |.|..|+ .|.|||....+...     ..+..+|..| ..|.|..+. +|+|..
T Consensus        13 ~~~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----~~~~~vC~df-lkG~C~r~~Cky~H~~   73 (89)
T 2rpp_A           13 KWLTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----NGRVIACFDS-LKGRCSRENCKYLHPP   73 (89)
T ss_dssp             SSSEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----TTBEEBCHHH-HHTCCCCTTCCSBCCC
T ss_pred             CcchhhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----CCceeeehhh-hhCcCCCCCcceecCH
Confidence            3456789999995 9999998 99999988764322     3467899977 689999985 588854

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.77  E-value=0.00054  Score=50.34  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             chhhccccccCCcCCCCCCccccCCccccccCCCCCCCCccccccccc
Q 042240          109 KTELCRSREEVGMCRFGTKCQFAHGKEELRSTLFPTTKNKSEVMTDSA  156 (241)
Q Consensus       109 KT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~~~~p~~yKTklCk~F~  156 (241)
                      |+.+|++|+..|.|. |++|.|+|...+          .++.+|+.|.
T Consensus        37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~----------~~~~~C~~f~   73 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-NKECPFLHIDPE----------SKIKDCPWSG   73 (77)
T ss_dssp             TSCBCHHHHHTCCCC-CSSCSSBCCCTT----------SSCSSSSCCT
T ss_pred             cCCCCcccCCCCccC-CCCeeccCCCcc----------ccCCCCcccc
Confidence            667899999779999 999999999643          3567888774

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.66  E-value=0.00036  Score=48.74  Aligned_cols=29  Identities=24%  Similarity=0.615  Sum_probs=27.1

Q ss_pred             CcchhhccccccCCcCCCCCCccccCCcc
Q 042240          107 SSKTELCRSREEVGMCRFGTKCQFAHGKE  135 (241)
Q Consensus       107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~  135 (241)
                      -.+|.+|+.|...|.|++|.+|.|.|..+
T Consensus        17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccccchhhhccccccCCCCCCCCccccCC
Confidence            47999999999999999999999999875

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.64  E-value=0.00047  Score=53.19  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=23.6

Q ss_pred             hhhccccccCCcCCCCCCccccCCcc
Q 042240          110 TELCRSREEVGMCRFGTKCQFAHGKE  135 (241)
Q Consensus       110 T~LCr~f~~~G~C~yGdkC~FAHG~~  135 (241)
                      +.+|++|...|.|+||++|.|+|...
T Consensus        36 ~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            78899997789999999999999854

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=96.39  E-value=0.00078  Score=48.73  Aligned_cols=33  Identities=21%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             CCCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240          105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS  139 (241)
Q Consensus       105 ~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~  139 (241)
                      ....++.+|+.|+ +|.|..| +|.|+|...+|+.
T Consensus        37 ~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~~   69 (70)
T 3d2q_A           37 TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQA   69 (70)
T ss_dssp             TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHHC
T ss_pred             ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHhc
Confidence            3568999999999 5999999 9999999998874

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.08  E-value=0.0053  Score=45.36  Aligned_cols=26  Identities=4%  Similarity=-0.102  Sum_probs=20.7

Q ss_pred             CCccccccccccccCCCCCC--CCcCccc
Q 042240          146 KNKSEVMTDSALVLTIQMED--HSMKASV  172 (241)
Q Consensus       146 ~yKTklCk~F~~~G~CpyG~--rf~H~~~  172 (241)
                      ..|++||+.| ..|.|+||.  +|.|...
T Consensus        17 ~~k~~LC~~~-~~G~C~~G~~C~FAHG~~   44 (69)
T 2d9m_A           17 TGYFSICDRY-MNGTCPEGNSCKFAHGNA   44 (69)
T ss_dssp             CSCCSBCHHH-HHSCCSSCSSCSSBSSHH
T ss_pred             CCCcccCccc-CcCCCCCCCccCCcCCHH
Confidence            3467999999 789999996  4778654

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=94.92  E-value=0.005  Score=44.94  Aligned_cols=29  Identities=28%  Similarity=0.487  Sum_probs=24.3

Q ss_pred             cchhhccccccCCcCCCCCCccccCCcccc
Q 042240          108 SKTELCRSREEVGMCRFGTKCQFAHGKEEL  137 (241)
Q Consensus       108 yKT~LCr~f~~~G~C~yGdkC~FAHG~~EL  137 (241)
                      -++.+|++|+..|.|.+ ++|.|+|...+.
T Consensus        42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           42 TKMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            36789999996699999 999999987654

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.51  E-value=0.0083  Score=46.34  Aligned_cols=32  Identities=25%  Similarity=0.522  Sum_probs=28.5

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS  139 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~  139 (241)
                      ...++.+|++|+ +|.|.+| +|.|.|...+|+.
T Consensus        52 ~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~~   83 (98)
T 2e5s_A           52 SDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQA   83 (98)
T ss_dssp             TTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHHH
T ss_pred             cCCccccchhhc-cCCCCCC-CcCccCChHHHHH
Confidence            468999999999 5999999 9999999988874

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=88.47  E-value=0.15  Score=35.51  Aligned_cols=26  Identities=0%  Similarity=-0.096  Sum_probs=21.5

Q ss_pred             CccccccccccccCCCCCCC--CcCccc
Q 042240          147 NKSEVMTDSALVLTIQMEDH--SMKASV  172 (241)
Q Consensus       147 yKTklCk~F~~~G~CpyG~r--f~H~~~  172 (241)
                      .++.+|..|.+.|+||+|..  +.|..+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            58899999999999999976  456543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=88.16  E-value=0.11  Score=45.63  Aligned_cols=23  Identities=35%  Similarity=0.745  Sum_probs=20.7

Q ss_pred             hhccccccCCcCCCCCCccccCCc
Q 042240          111 ELCRSREEVGMCRFGTKCQFAHGK  134 (241)
Q Consensus       111 ~LCr~f~~~G~C~yGdkC~FAHG~  134 (241)
                      .+|.+|. .|.|++|++|.|.|..
T Consensus        71 ~~C~ffa-kG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           71 FFCLFFA-KGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             SBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred             eEcCccc-cCCCCCCCCCCccCCC
Confidence            4899998 5999999999999964

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=85.75  E-value=0.17  Score=37.87  Aligned_cols=31  Identities=19%  Similarity=0.495  Sum_probs=26.6

Q ss_pred             CcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240          107 SSKTELCRSREEVGMCRFGTKCQFAHGKEELRS  139 (241)
Q Consensus       107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~  139 (241)
                      .-+..+|..|+ +|.|..+ .|.|.|...+|..
T Consensus        40 ~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~~   70 (83)
T 3d2n_A           40 NGRVIACFDSL-KGRCSRE-NCKYLHPPPHLKT   70 (83)
T ss_dssp             TTEEECCHHHH-TTCCCCS-SCSSCCCCHHHHH
T ss_pred             CCceeehhHhh-hccccCC-CcceeCChHHHHH
Confidence            45788999999 6999998 8999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-12
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	3e-12
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-10

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 23/35 (65%), Positives = 26/35 (74%)

Query: 105 SSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           S+  KTELCR  EE G C++G KCQFAHG  ELRS
Sbjct: 1   STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 103 SSSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS 139
           ++SS  KTELCR+  E G CR+G KCQFAHG  ELR 
Sbjct: 2   TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 38

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (128), Expect = 1e-10
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 109 KTELCRSREEVGMCRFGTKCQFAHGKEE 136
           KTELCR+   +G C +G +C F H  +E
Sbjct: 7   KTELCRTFHTIGFCPYGPRCHFIHNADE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.57
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.56
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.49
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.26
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.91
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.89
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.04
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	94.23
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	88.9
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	84.16

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.8e-16  Score=103.11  Aligned_cols=37  Identities=62%  Similarity=1.069  Sum_probs=34.5

Q ss_pred             CCCCcchhhccccccCCcCCCCCCccccCCccccccC
Q 042240          104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEELRST  140 (241)
Q Consensus       104 ~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~~  140 (241)
                      ...+|||+||++|...|.|+||++|+||||++|||..
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            3569999999999999999999999999999999975

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-16  Score=102.87  Aligned_cols=34  Identities=65%  Similarity=1.127  Sum_probs=32.5

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCCcccccc
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHGKEELRS  139 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~ELr~  139 (241)
                      .+|||+||++|...|.|+||++|+||||++|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            5899999999998999999999999999999995

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-15  Score=97.02  Aligned_cols=33  Identities=39%  Similarity=0.948  Sum_probs=30.9

Q ss_pred             CCCCcchhhccccccCCcCCCCCCccccCCccc
Q 042240          104 SSSSSKTELCRSREEVGMCRFGTKCQFAHGKEE  136 (241)
Q Consensus       104 ~~~~yKT~LCr~f~~~G~C~yGdkC~FAHG~~E  136 (241)
                      ++.+|||+||++|...|.|+||++|+||||++|
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            457899999999999999999999999999987

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.6e-08  Score=60.83  Aligned_cols=30  Identities=10%  Similarity=-0.064  Sum_probs=25.2

Q ss_pred             CCCCCCccccccccccccCCCCCCC--CcCccc
Q 042240          142 FPTTKNKSEVMTDSALVLTIQMEDH--SMKASV  172 (241)
Q Consensus       142 ~~p~~yKTklCk~F~~~G~CpyG~r--f~H~~~  172 (241)
                      ++| +|||++|+.|...|.||||.+  |+|...
T Consensus         2 rhp-kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           2 RHP-KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             CCT-TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CCC-CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            356 899999999999999999975  777653

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-06  Score=56.01  Aligned_cols=29  Identities=14%  Similarity=-0.042  Sum_probs=24.7

Q ss_pred             CCCccccccccccccCCCCCCC--CcCcccc
Q 042240          145 TKNKSEVMTDSALVLTIQMEDH--SMKASVC  173 (241)
Q Consensus       145 ~~yKTklCk~F~~~G~CpyG~r--f~H~~~s  173 (241)
                      .+|||++|+.|...|.|+||.+  |+|...|
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~E   32 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHE   32 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGG
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHH
Confidence            3899999999988999999964  7887754

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=3.1e-06  Score=54.86  Aligned_cols=29  Identities=7%  Similarity=-0.095  Sum_probs=24.6

Q ss_pred             CCCccccccccccccCCCCCCC--CcCcccc
Q 042240          145 TKNKSEVMTDSALVLTIQMEDH--SMKASVC  173 (241)
Q Consensus       145 ~~yKTklCk~F~~~G~CpyG~r--f~H~~~s  173 (241)
                      .+|||++|+.|...|.|+||.+  |+|...|
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~E   35 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGE   35 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHH
Confidence            4899999999999999999975  7776543

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00011  Score=44.37  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=23.7

Q ss_pred             CcchhhccccccCCcCCCCCCccccCCc
Q 042240          107 SSKTELCRSREEVGMCRFGTKCQFAHGK  134 (241)
Q Consensus       107 ~yKT~LCr~f~~~G~C~yGdkC~FAHG~  134 (241)
                      ..|.+||++|. .|+|..|++|.|-|++
T Consensus         3 ~kkkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           3 PKKRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             SCCCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             chhhhhhhhhe-eeeecCCcCcccccCC
Confidence            35789999988 7999999999999974

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0066  Score=41.57  Aligned_cols=22  Identities=32%  Similarity=0.765  Sum_probs=20.3

Q ss_pred             hccccccCCcCCCCCCccccCC
Q 042240          112 LCRSREEVGMCRFGTKCQFAHG  133 (241)
Q Consensus       112 LCr~f~~~G~C~yGdkC~FAHG  133 (241)
                      .|+.|..++.|--|++|.|.|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            4999998899999999999995

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.12  Score=30.74  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=17.7

Q ss_pred             ccccccccccccCCCCCCCC--cCc
Q 042240          148 KSEVMTDSALVLTIQMEDHS--MKA  170 (241)
Q Consensus       148 KTklCk~F~~~G~CpyG~rf--~H~  170 (241)
                      |-.+|+ |...|+|..|.+|  +|.
T Consensus         5 kkelCK-fYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCK-FYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCT-TTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhh-hheeeeecCCcCcccccC
Confidence            567999 6689999999874  564

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.18  Score=31.43  Aligned_cols=28  Identities=25%  Similarity=0.657  Sum_probs=21.4

Q ss_pred             CCcchhhccccccCCcCCCCCCccccCC
Q 042240          106 SSSKTELCRSREEVGMCRFGTKCQFAHG  133 (241)
Q Consensus       106 ~~yKT~LCr~f~~~G~C~yGdkC~FAHG  133 (241)
                      ...+|.+|..|...|-|+.|.+|--.|+
T Consensus         9 ~~~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1           9 RPHPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCCCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CCCccchhhhhhhccccCCCCCCcccCc
Confidence            3556778888888888888888877775