Citrus Sinensis ID: 042257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MAVKFNTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQMDRRNGGDLENAIN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mavkfntqflshnakpylGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFafvlerktrpkmtlpIFAKIALVSLFepvisqnlyytgmkyTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTllkgpilkfpwKQVRLLHNQLETGiqnneedlTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLmkrrgpvfvssfnPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLwgrnkdrspsksdnnevtqpdqqMAIKsnmtnevtppdqqmdrrnggdlenain
Flexible Loop (DISEMBL)
mavkfntqflshnakpYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDrspsksdnnevtqpdqqmaiKSNMtnevtppdqqmdrrnggdlenain
Low Complexity Region (SEG)
MAVKFNTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRiigaviivigLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQMDRRNGGDLENAIN
Disordered region (IsUnstruct)
****FNTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG****************************************************
Disordered Region (DISOPRED)
*************AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW********************LTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG****************************************************
Disordered Region (DISEMBL)
MAVKFNTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK**************PDQQMAIKSNMTNEVTPPDQQMDRRNG********
Disordered Region (DISPRO)
*****NTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK*****************EDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN**************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVKFNTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQMDRRNGGDLENAIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
O80638	374	WAT1-related protein At2g	yes	no	0.939	0.962	0.569	1e-117
Q9FNA5	377	WAT1-related protein At5g	no	no	0.890	0.904	0.534	1e-110
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.937	0.944	0.483	1e-100
Q9SUF1	384	WAT1-related protein At4g	no	no	0.861	0.859	0.451	9e-84
Q9FL41	402	WAT1-related protein At5g	no	no	0.924	0.880	0.437	7e-83
F4HZQ7	389	WAT1-related protein At1g	no	no	0.955	0.940	0.433	2e-82
Q9LPF1	370	WAT1-related protein At1g	no	no	0.911	0.943	0.429	2e-79
Q501F8	373	WAT1-related protein At4g	no	no	0.921	0.946	0.425	3e-79
F4IJ08	394	WAT1-related protein At2g	no	no	0.937	0.911	0.391	3e-76
F4IQX1	336	WAT1-related protein At2g	no	no	0.848	0.967	0.427	1e-74

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/369 (56%), Positives = 268/369 (72%), Gaps = 9/369 (2%)

Query: 15  KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
           KP++ V+ +QF Y+ +S+IAK ALNQGMSP+VL +YR +VATI IAPFA+ L+RK RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 75  TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
           TL IF KI L+ L EP I QNLYYTGMKYT+ATFT AM N+LPA  F+MAWIFRLEKV +
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH-NQLETGIQNNEEDLTKGA 193
           K  HSQAKILGTIVT GGAM MT++KGP++  PW     +H +   TG++   +DLTKGA
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVK---QDLTKGA 183

Query: 194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
            LIA GC  W+ FI LQA  LKSYP ELSLTA ICF+ S+E TI+ L IERGN   W +H
Sbjct: 184 SLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIH 243

Query: 254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
            D+KLLA +YGG + S   Y++ G +MK RGPVFV++FNPL MVI+A+LGS  LAE ++L
Sbjct: 244 LDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFL 303

Query: 313 GRIIGAVIIVIGLYMVLWGRNKDR-SPSKSDNNE---VTQPDQQMAIKSNMTNEVTPPDQ 368
           GRI+GA++IV+GLY VLWG++KD  S S SD ++   ++ P   +  K+N   +      
Sbjct: 304 GRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPLSTPQIVLPSKANAKMDTNDASV 363

Query: 369 QMDRRNGGD 377
            + R N  +
Sbjct: 364 VISRPNTNE 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/346 (53%), Positives = 256/346 (73%), Gaps = 5/346 (1%)

Query: 12  HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
             A+P++ ++F+Q  Y++MS++AKLALN+GMSP+VLVAYRM VA+ LI PFA +LER TR
Sbjct: 4   ERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTR 63

Query: 72  PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
           PK+T  I  +IA++SLFEPV+ QNLYY+GMK TTATFT A+CN LPA+TF+MA +F+LEK
Sbjct: 64  PKLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEK 123

Query: 132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW-KQVRLLHNQLETGIQNNEEDLT 190
           V I+  HSQAK++GT+V  GGAM MT +KG +++ PW    R L+          + D+ 
Sbjct: 124 VTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIA 183

Query: 191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIW 250
           +G++++ A CF+WSC+IILQA +L  Y AELSLTAL+C M  +E T++ L  ER N  +W
Sbjct: 184 RGSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVW 243

Query: 251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
            ++ D  LLA IYGG VS  AY+++GW  K RGPVFVS+FNPL MV++A+L +F   EK+
Sbjct: 244 KINPDVTLLASIYGGLVSGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKV 303

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKDR----SPSKSDNNEVTQPDQQ 352
           Y+GR+IG+V+IVIG+Y+VLWG++KD+     P+      V + DQQ
Sbjct: 304 YVGRVIGSVVIVIGIYLVLWGKSKDKGGMLQPNAGCAETVVKIDQQ 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/368 (48%), Positives = 256/368 (69%), Gaps = 9/368 (2%)

Query: 12  HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
             A+P++ ++ +Q   + M +++K  LN+GMS YVLV YR  VATI++APFAF  ++K R
Sbjct: 11  EKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVR 70

Query: 72  PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
           PKMTL IF KI+L+ L EPVI QNLYY GMKYTTATF  AM N+LPA+TF++A+IF LE+
Sbjct: 71  PKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLER 130

Query: 132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTK 191
           VK++   S  K++GT+ T GGAM MTL+KGP+L   W +    HN   T I +      K
Sbjct: 131 VKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSA----IK 186

Query: 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL 251
           GA+L+  GCF+++CF+ILQA  L++YPAELSLTA IC M ++EGT + L +E+GN   W 
Sbjct: 187 GAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWA 246

Query: 252 LHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
           + +D KLL   Y G V S  AY++ G +MK RGPVFV++F+PL M+I+A++ +   AE++
Sbjct: 247 IGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQM 306

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKDRSPSKS--DNNEVTQPDQQMA--IKSNMTNEVTPP 366
           YLGR++GAV+I  GLY+V+WG+ KD   + +   ++E  QP  +++   K N+ +EV   
Sbjct: 307 YLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESAQPKLELSGNGKDNVDHEVITI 366

Query: 367 DQQMDRRN 374
            +Q ++R 
Sbjct: 367 SKQGEQRR 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  310 bits (795), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 150/332 (45%), Positives = 216/332 (65%), Gaps = 2/332 (0%)

Query: 12  HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
           H  +PYL +IF+QF  +   ++    LNQG + YV++ YR +VA +++APFA + ERK R
Sbjct: 9   HKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVR 68

Query: 72  PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
           PKMTL +  KI  +   EPV+ Q   Y GM  T+AT+T A+ NILP++TF++AWI R+EK
Sbjct: 69  PKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEK 128

Query: 132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTK 191
           V I    S+AKI+GT+V  GGA+ MTL KGP++  PW    +      T    +  +   
Sbjct: 129 VNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVV 188

Query: 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL 251
           G LLI  GC AWS F +LQ+  +K+YPA+LSL+ALIC   +V+   + L +ER  +G W 
Sbjct: 189 GTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSG-WA 247

Query: 252 LHFDAKLLAVIYGGFVSC-TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
           + +DA+L A +Y G VS    Y++ G +MK RGPVFV++FNPL M+++A++ SF L E++
Sbjct: 248 VGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQI 307

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSD 342
           + G +IG  +I  GLYMV+WG+ KD   S  D
Sbjct: 308 HFGCVIGGAVIAAGLYMVVWGKGKDYEVSGLD 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  307 bits (787), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 164/375 (43%), Positives = 244/375 (65%), Gaps = 21/375 (5%)

Query: 13  NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP 72
           ++KPY  +I +QF Y+ M++I K++LN GMS YVLV YR  +AT +IAPFAF  ERK +P
Sbjct: 15  SSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQP 74

Query: 73  KMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKV 132
           K+T  IF ++ ++ L  PVI QN YY G+KYT+ TF+ AM N+LPA+TF++A +FR+E +
Sbjct: 75  KITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEML 134

Query: 133 KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETG-------IQNN 185
            +K    QAKI GT+VT  GAM MT+ KGPI++  W   + +H Q  +          ++
Sbjct: 135 DLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFW--TKYMHIQDSSHANTTSSKNSSS 192

Query: 186 EEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIER 244
           +++  KG++L+     AW+   +LQA +LK+Y   +LSLT LICF+ +++   +T  +E 
Sbjct: 193 DKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEH 252

Query: 245 GNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGS 303
            N   W + +D  LLA  Y G V S  +Y++ G +MK+RGPVF ++F+PL MVI+AV+GS
Sbjct: 253 -NPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGS 311

Query: 304 FFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPD-QQMAIKSNMTNE 362
           F LAEK++LG +IGAV+IVIGLY VLWG+ K+        N+VT  +  ++   S +T +
Sbjct: 312 FVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE--------NQVTICELAKIDSNSKVTED 363

Query: 363 VTPPDQQMDRRNGGD 377
           V     +M    G +
Sbjct: 364 VEANGSKMKISEGDN 378

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/376 (43%), Positives = 228/376 (60%), Gaps = 10/376 (2%)

Query: 10  LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK 69
           L ++ KPYL +I MQF Y+ M +I  ++L  GM+ YVL  YR  +AT +IAPFA   ERK
Sbjct: 5   LMNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERK 64

Query: 70  TRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRL 129
            RPKMT  IF +IAL+   EPV+ QNLYY GM YT+ATF  A  N+LPA+TF++A IFRL
Sbjct: 65  IRPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRL 124

Query: 130 EKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKF-------PWKQVRLLHNQLETGI 182
           E V  K   S AK++GT++T  GA+ MTL KGPI+ F                +    G 
Sbjct: 125 ESVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGA 184

Query: 183 QNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAI 242
              ++    G L++    F W+ F ILQ+F LK YPAELSLT LIC M ++EGT ++L  
Sbjct: 185 AAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVT 244

Query: 243 ERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVL 301
            R +   W + FD+ L A  Y G + S  AY++ G +M+ RGPVFV++FNPL +VI A L
Sbjct: 245 VR-DLSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAAL 303

Query: 302 GSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTN 361
           G   L+E ++LG +IG + I++GLY V+WG+ KD+  +  D +    P +   +K   T 
Sbjct: 304 GVVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDEDCKGLPIKS-PVKPVDTG 362

Query: 362 EVTPPDQQMDRRNGGD 377
           +    + +M  + G +
Sbjct: 363 KGLAAELEMKSKEGQE 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 228/370 (61%), Gaps = 21/370 (5%)

Query: 15  KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
           KP L +I +QF Y+ M +I  ++   GM  +VL  YR VVAT+++APFA + ERK RPKM
Sbjct: 10  KPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRPKM 69

Query: 75  TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
           TL IF ++  + + EP++ QNLYY G+K T+A++T A  N LPA+TF++A IFRLE V  
Sbjct: 70  TLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVNF 129

Query: 135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNE--EDLTKG 192
           +  HS AK++GT++T GGAM MTL KGP ++     V+  HN    G  +    +    G
Sbjct: 130 RKVHSVAKVVGTVITVGGAMIMTLYKGPAIEI----VKAAHNSFHGGSSSTPTGQHWVLG 185

Query: 193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252
            + I      W+ F ILQ++ LK YPAELSL  LIC + ++   I +L + R +   W +
Sbjct: 186 TIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVR-DPSAWKI 244

Query: 253 HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLY 311
             D+  LA +Y G V S  AY+I   ++K+RGPVF +SF+P+ M+I A LG+  LAEK++
Sbjct: 245 GMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIH 304

Query: 312 LGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQMD 371
           LG IIGAV IV+GLY V+WG++KD         EV   D+++  KS    +  P    + 
Sbjct: 305 LGSIIGAVFIVLGLYSVVWGKSKD---------EVNPLDEKIVAKS----QELPITNVVK 351

Query: 372 RRNGGDLENA 381
           + NG D+  A
Sbjct: 352 QTNGHDVSGA 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  295 bits (756), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 158/371 (42%), Positives = 224/371 (60%), Gaps = 18/371 (4%)

Query: 15  KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
           KP + +I +QF Y+ M +I  ++   GM+ ++L  YR VVATI+IAPFA +LERK RPKM
Sbjct: 10  KPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRPKM 69

Query: 75  TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
           T P+F +I  +   EP++ QNLYY GMK T+AT++ A  N LPA+TF+MA IFR+E V +
Sbjct: 70  TWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVNL 129

Query: 135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILK-FPWKQVRLLHNQLETGIQNNEEDLTKGA 193
           K T S AK++GT +T GGAM MTL KGP ++ F      L      T  +  +++   G 
Sbjct: 130 KKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGT 189

Query: 194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
           L +      W+ F ILQ+F LK YPAELSL   IC M +V  TI +L + R +   W + 
Sbjct: 190 LAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVR-DVSAWKVG 248

Query: 254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
            D+  LA +Y G V S  AY+I   +++ RGPVF +SF+P+ M+I A LG   LAEK++L
Sbjct: 249 MDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHL 308

Query: 313 GRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQMDR 372
           G IIGA+ IV GLY V+WG+ KD         EV   ++++ ++        P      +
Sbjct: 309 GSIIGAIFIVFGLYSVVWGKAKD---------EVISVEEKIGMQE------LPITNTSTK 353

Query: 373 RNGGDLENAIN 383
             GG + + +N
Sbjct: 354 VEGGGITSEVN 364

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 225/373 (60%), Gaps = 14/373 (3%)

Query: 10  LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK 69
           +S +AKPY  ++ +QF Y+ M+++ K  L++GMS YVLVAYR   AT  IAPFA + ERK
Sbjct: 5   MSESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERK 64

Query: 70  TRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRL 129
            R KMT PIF +I L++L  PVI QNLYY G+K T+ TF+ A+ NI+PA+T ++A +FR+
Sbjct: 65  VRSKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRM 124

Query: 130 EKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDL 189
           EKV+++      K++GT+VT  G++ M   KGP + F         + L         D 
Sbjct: 125 EKVEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINF-------FRSHLTAASSPPTADY 177

Query: 190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI 249
            K A+ +     +W+ F +LQA  LK Y A LS++ ++CFM +++   L   +E  N   
Sbjct: 178 LKAAVFLLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEH-NPSA 236

Query: 250 WLLHFDAKLLAVIYGGFVSCT-AYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAE 308
             + FD  LLA  Y G +S + AY++ G +M+R+GPVFV++FNPL +VI++++  F L +
Sbjct: 237 LNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQ 296

Query: 309 KLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQ 368
            +YLG +IG V++++G+Y VLWG++ D      D  E    D  +A+K    N       
Sbjct: 297 GIYLGGVIGVVVLMVGVYAVLWGKHVD-----DDGEETRHEDNVVAVKCCSGNNGLTIMP 351

Query: 369 QMDRRNGGDLENA 381
           ++D  +  D+E  
Sbjct: 352 KIDEADEEDVETG 364

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 223/365 (61%), Gaps = 40/365 (10%)

Query: 12  HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
             A P++ ++ +Q  Y+ M ++ K  LN+GMS YVL  YR  VAT+++APFAF  +    
Sbjct: 5   KKALPFILMVLLQIGYAGMDILTKDVLNKGMSIYVLSVYRHGVATVVMAPFAFYFD---- 60

Query: 72  PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
                             PVI+QNL+  GMKYTTATF +A+ N LPA+TF++A IFRLE 
Sbjct: 61  -----------------NPVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLES 103

Query: 132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTK 191
           VK +S  S AK++GT+ T GG M MTL+KGP L   W +     N + T I ++     K
Sbjct: 104 VKFQSIRSAAKVVGTVTTVGGIMVMTLVKGPALDLFWTKGPSAQNTVGTDIHSS----IK 159

Query: 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL 251
           GA+L+  GCF+++CF+ILQA  LK+YPAELSL   IC + ++EG ++ L +E+GN  +W 
Sbjct: 160 GAVLVTIGCFSYACFMILQAITLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWA 219

Query: 252 LHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
           + +D KLL + Y G V S   Y+I G +MK RGPVFV++F PL M+++A++ S    E++
Sbjct: 220 IGWDTKLLTITYSGIVCSALGYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQM 279

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKD-RSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQ 369
           YLGR +GA +I +GLY+V+WG+ KD   PS        Q D  +A       + T   Q+
Sbjct: 280 YLGRALGATVICVGLYLVIWGKAKDYEYPSTP------QIDDDLA-------QATTSKQK 326

Query: 370 MDRRN 374
             RR 
Sbjct: 327 EQRRT 331

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
297827555	375	nodulin MtN21 family protein [Arabidopsi	0.856	0.874	0.619	1e-116
224109582	350	predicted protein [Populus trichocarpa]	0.879	0.962	0.614	1e-115
15225480	374	nodulin MtN21-like protein [Arabidopsis	0.939	0.962	0.569	1e-115
359481510	396	PREDICTED: auxin-induced protein 5NG4-li	0.979	0.946	0.543	1e-114
255575124	381	Auxin-induced protein 5NG4, putative [Ri	0.911	0.916	0.560	1e-113
449448663	375	PREDICTED: auxin-induced protein 5NG4-li	0.939	0.96	0.535	1e-112
297741549	383	unnamed protein product [Vitis vinifera]	0.942	0.942	0.548	1e-111
449502577	368	PREDICTED: auxin-induced protein 5NG4-li	0.937	0.975	0.528	1e-110
224100927	380	predicted protein [Populus trichocarpa]	0.926	0.934	0.548	1e-109
224100923	368	predicted protein [Populus trichocarpa]	0.848	0.883	0.584	1e-109

>gi|297827555|ref|XP_002881660.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327499|gb|EFH57919.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/334 (61%), Positives = 256/334 (76%), Gaps = 6/334 (1%)

Query: 15  KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
           KP++ V+ +QF Y+ +S+IAK ALNQGMSP+VL AYR +VATI IAPFA+ L+RK RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLAAYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 75  TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
           TLPIF KI L+ L EP I QNLYYTGMKYT+ATFT AM N+LPA  F+MAWIFRLEKV +
Sbjct: 67  TLPIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH-NQLETGIQNNEEDLTKGA 193
           K  HSQAKILGT+VT GGAM MT++KGP++  PW     +H +   TG+Q   +DLTKGA
Sbjct: 127 KKIHSQAKILGTVVTVGGAMLMTVVKGPLIPLPWANPHDIHQDPSNTGVQ---QDLTKGA 183

Query: 194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
            LIA GC  W+ FI LQA  LKSYP ELSLTA ICFM S+E TI+ L IERGN   W + 
Sbjct: 184 SLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFMGSIESTIVALFIERGNPSAWAIQ 243

Query: 254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
            D+KLLA +YGG + S   Y++ G +MK RGPVFV++FNPL MVI+A+LGS  LAE ++L
Sbjct: 244 LDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFL 303

Query: 313 GRIIGAVIIVIGLYMVLWGRNKDR-SPSKSDNNE 345
           GRI+GA++IV+GLY VLWG++KD  S S SD ++
Sbjct: 304 GRILGAIVIVLGLYSVLWGKSKDEPSSSFSDTDK 337

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109582|ref|XP_002315243.1| predicted protein [Populus trichocarpa] gi|222864283|gb|EEF01414.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/342 (61%), Positives = 253/342 (73%), Gaps = 5/342 (1%)

Query: 13  NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP 72
            AKP+L V+ MQF Y+ MS+I+K ALN+GMS +VLV YR  VATI+IAPFAF+ +RK RP
Sbjct: 12  KAKPFLAVVLMQFGYAGMSIISKHALNEGMSQHVLVVYRHAVATIVIAPFAFIFDRKVRP 71

Query: 73  KMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKV 132
           KMTL IF KI L+ L EP I QNLYYTGMKYTTATF  AMCNILPA  FLMAW  RLEKV
Sbjct: 72  KMTLSIFFKIMLMGLLEPTIDQNLYYTGMKYTTATFASAMCNILPAFAFLMAWALRLEKV 131

Query: 133 KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKG 192
            I+  HSQAKI+GTIVT GGAM MTL+KG  L  PW +    ++Q  +     ++D  KG
Sbjct: 132 NIRKMHSQAKIIGTIVTVGGAMLMTLVKGTQLDLPWTKG---YDQHASTGGLTKQDPIKG 188

Query: 193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252
           AL+I  GC  W+ FIILQA  LKSYP ELSLTA ICFM ++EGT+L + +ERGN   W +
Sbjct: 189 ALMITTGCACWASFIILQAITLKSYPVELSLTAWICFMGTIEGTVLAVVMERGNPSAWSI 248

Query: 253 HFDAKLLAVIYGG-FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLY 311
             D KLLA +Y G F S  AY++ G +MKRRGPVFV++FNPL MVI+A+LGSFFL E LY
Sbjct: 249 ALDYKLLAAVYSGVFCSGLAYYVQGLIMKRRGPVFVTAFNPLSMVIVAILGSFFLKEILY 308

Query: 312 LGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQ-PDQQ 352
           LGR+ GAV+IV GLY+VLWG++KD  PS S N+   Q P +Q
Sbjct: 309 LGRVFGAVVIVTGLYLVLWGKSKDEPPSNSSNDHKWQAPCKQ 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225480|ref|NP_181483.1| nodulin MtN21-like protein [Arabidopsis thaliana] gi|3355480|gb|AAC27842.1| nodulin-like protein [Arabidopsis thaliana] gi|30017241|gb|AAP12854.1| At2g39510 [Arabidopsis thaliana] gi|110743791|dbj|BAE99731.1| nodulin-like protein [Arabidopsis thaliana] gi|330254594|gb|AEC09688.1| nodulin MtN21-like protein [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/369 (56%), Positives = 268/369 (72%), Gaps = 9/369 (2%)

Query: 15  KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
           KP++ V+ +QF Y+ +S+IAK ALNQGMSP+VL +YR +VATI IAPFA+ L+RK RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 75  TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
           TL IF KI L+ L EP I QNLYYTGMKYT+ATFT AM N+LPA  F+MAWIFRLEKV +
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH-NQLETGIQNNEEDLTKGA 193
           K  HSQAKILGTIVT GGAM MT++KGP++  PW     +H +   TG++   +DLTKGA
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVK---QDLTKGA 183

Query: 194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
            LIA GC  W+ FI LQA  LKSYP ELSLTA ICF+ S+E TI+ L IERGN   W +H
Sbjct: 184 SLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIH 243

Query: 254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
            D+KLLA +YGG + S   Y++ G +MK RGPVFV++FNPL MVI+A+LGS  LAE ++L
Sbjct: 244 LDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFL 303

Query: 313 GRIIGAVIIVIGLYMVLWGRNKDR-SPSKSDNNE---VTQPDQQMAIKSNMTNEVTPPDQ 368
           GRI+GA++IV+GLY VLWG++KD  S S SD ++   ++ P   +  K+N   +      
Sbjct: 304 GRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPLSTPQIVLPSKANAKMDTNDASV 363

Query: 369 QMDRRNGGD 377
            + R N  +
Sbjct: 364 VISRPNTNE 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481510|ref|XP_002274909.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/383 (54%), Positives = 276/383 (72%), Gaps = 8/383 (2%)

Query: 6   NTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFV 65
           +T  L +  KP+L V F+QF ++ M V +K+ALNQG+S YVLV YR  +AT  IAPFA +
Sbjct: 9   STYRLLYRVKPFLAVTFLQFGFAGMDVFSKVALNQGVSNYVLVVYRHAIATAFIAPFAVI 68

Query: 66  LERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAW 125
           L++K RPKMT  IF K+ L+SL EPVI QNLYY G+KYTTATF  AM NILPA+TFLMA 
Sbjct: 69  LDKKVRPKMTFSIFTKLMLLSLLEPVIDQNLYYFGLKYTTATFAAAMYNILPAITFLMAC 128

Query: 126 IFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNN 185
           IF LEKV +KS HSQAK++GT+ T  GAM MTL+KGP+++  W + R  +NQ   G   N
Sbjct: 129 IFGLEKVTLKSIHSQAKVVGTVATVAGAMLMTLVKGPVIELIWTKGR--NNQGVKGGGTN 186

Query: 186 EEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERG 245
             D  KG+L+I AGCF+W+CFIILQA  LK+YPAELSLTA IC + + +GTI+ L +ERG
Sbjct: 187 IHDSIKGSLMITAGCFSWACFIILQAITLKTYPAELSLTAWICLLGTAQGTIVALVMERG 246

Query: 246 NTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSF 304
            T +W +H+D K LA +Y G V S  AY+I G +MK RGPVFV++FNPL M+I+AV+ SF
Sbjct: 247 KTSVWSIHWDTKFLAALYSGIVCSGLAYYIQGVVMKDRGPVFVTAFNPLSMIIVAVMSSF 306

Query: 305 FLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD-RSPSKSDNNEVTQPDQQMAIKSNMTNEV 363
            LAE++YLGR+IGA++IV GLY V+WG++K+ +S S S + ++ Q D+QM   S+ +NE 
Sbjct: 307 ILAEQMYLGRVIGAIVIVAGLYFVVWGKSKEYKSGSPSTDGQMVQ-DKQMTDASSDSNEN 365

Query: 364 TPPDQ---QMDRRNGGDLENAIN 383
           + P+     +  R G   +  IN
Sbjct: 366 STPEVITLNVSSRGGATRDEQIN 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575124|ref|XP_002528467.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532143|gb|EEF33950.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/362 (56%), Positives = 257/362 (70%), Gaps = 13/362 (3%)

Query: 13  NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP 72
            AKP+L VI +QF Y+ +S+I+K ALNQGMS +VLV YR  VATI+I PFA + +RK RP
Sbjct: 12  KAKPFLAVILLQFGYAGLSIISKFALNQGMSQHVLVVYRHAVATIVITPFAILFDRKVRP 71

Query: 73  KMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKV 132
           KMT+ IF KI ++ L EP I QNLYYTGMKYTTATF   MCNILPA  F+MAWI RLEKV
Sbjct: 72  KMTISIFLKILMMGLLEPTIDQNLYYTGMKYTTATFAATMCNILPAFAFIMAWILRLEKV 131

Query: 133 KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLE-TGIQNNEEDLTK 191
            +K  HSQAK+LGTIVT GGAM MTL+KG  L  PW +    +N ++ +      +D  K
Sbjct: 132 NLKRVHSQAKLLGTIVTVGGAMIMTLVKGAKLNLPWTEG---YNDIQGSSSAPTMQDTIK 188

Query: 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL 251
           GA LI  GC  WS FIILQA  LK+YPAELSLTA IC M ++EGTI  + +ERGN   W 
Sbjct: 189 GASLIGVGCICWSAFIILQAITLKTYPAELSLTAFICLMGTIEGTIFAVIMERGNPSAWS 248

Query: 252 LHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
           +HFD KLLA +Y G + S  AY++ G +MK +GPVFV++FNPL M+I+ +LGSF L+E +
Sbjct: 249 IHFDTKLLACVYSGVICSGVAYYVQGVIMKSKGPVFVTAFNPLCMIIVTILGSFVLSEIV 308

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNN---EVTQPDQQMAIKSNMTNEVTPPD 367
           Y GR++GA++IVIGLY+VLWG++KD+SPS S+N+   EVT  +        M   +   D
Sbjct: 309 YFGRVLGALVIVIGLYLVLWGKSKDQSPSTSNNDDKVEVTTSEMD-----TMNERIGASD 363

Query: 368 QQ 369
           Q 
Sbjct: 364 QD 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448663|ref|XP_004142085.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 274/368 (74%), Gaps = 8/368 (2%)

Query: 13  NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP 72
           +AKP+  V+F+QF  + M +++K ALNQGMS YVLV YR  VATI+IAPFA + ++K RP
Sbjct: 11  SAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRP 70

Query: 73  KMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKV 132
           KMT+P+FAK+ ++SL EPVI QNLY+ GMKYTTATF  AMCNILPA+TF+MAWI RLEKV
Sbjct: 71  KMTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWILRLEKV 130

Query: 133 KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKG 192
           +IKS  SQAKI+GT+ T GGAM MTL+KGPI++  W + R  + Q    I  + +   KG
Sbjct: 131 RIKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKERANNPQQRGEI--SLQHTIKG 188

Query: 193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252
           +++I  GCF+W+CF+ILQA  LK+YPAELSLTA IC + + EGT++ L +ERGN  +W +
Sbjct: 189 SIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAVWSI 248

Query: 253 HFDAKLLAVIYGG-FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLY 311
            +  KLLA +Y G F S  AY+I G +MK +GPVFV++F+PL MVI+A++ SF L E+LY
Sbjct: 249 TWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLY 308

Query: 312 LGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNE--VTPPDQQ 369
            GR++GAV+I++GLY+V+WG+NKD + S S++ ++  P +Q+ ++ N T E     P+  
Sbjct: 309 FGRVLGAVVIIVGLYLVVWGKNKDENCSSSEDLKL--PTKQI-LEDNKTMETLTIEPNSC 365

Query: 370 MDRRNGGD 377
           +D +N  +
Sbjct: 366 IDLKNNNE 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741549|emb|CBI32681.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/372 (54%), Positives = 267/372 (71%), Gaps = 11/372 (2%)

Query: 6   NTQFLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFA-- 63
           +T  L +  KP+L V F+QF ++ M V +K+ALNQG+S YVLV YR  +AT  IAPFA  
Sbjct: 9   STYRLLYRVKPFLAVTFLQFGFAGMDVFSKVALNQGVSNYVLVVYRHAIATAFIAPFAKT 68

Query: 64  ----FVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPAL 119
                   RK RPKMT  IF K+ L+SL EPVI QNLYY G+KYTTATF  AM NILPA+
Sbjct: 69  EYKIHFFNRKVRPKMTFSIFTKLMLLSLLEPVIDQNLYYFGLKYTTATFAAAMYNILPAI 128

Query: 120 TFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLE 179
           TFLMA IF LEKV +KS HSQAK++GT+ T  GAM MTL+KGP+++  W + R  +NQ  
Sbjct: 129 TFLMACIFGLEKVTLKSIHSQAKVVGTVATVAGAMLMTLVKGPVIELIWTKGR--NNQGV 186

Query: 180 TGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT 239
            G   N  D  KG+L+I AGCF+W+CFIILQA  LK+YPAELSLTA IC + + +GTI+ 
Sbjct: 187 KGGGTNIHDSIKGSLMITAGCFSWACFIILQAITLKTYPAELSLTAWICLLGTAQGTIVA 246

Query: 240 LAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVII 298
           L +ERG T +W +H+D K LA +Y G V S  AY+I G +MK RGPVFV++FNPL M+I+
Sbjct: 247 LVMERGKTSVWSIHWDTKFLAALYSGIVCSGLAYYIQGVVMKDRGPVFVTAFNPLSMIIV 306

Query: 299 AVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD-RSPSKSDNNEVTQPDQQMAIKS 357
           AV+ SF LAE++YLGR+IGA++IV GLY V+WG++K+ +S S S + ++ Q D+QM   S
Sbjct: 307 AVMSSFILAEQMYLGRVIGAIVIVAGLYFVVWGKSKEYKSGSPSTDGQMVQ-DKQMTDAS 365

Query: 358 NMTNEVTPPDQQ 369
           + +NE + P+  
Sbjct: 366 SDSNENSTPEHS 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502577|ref|XP_004161682.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/367 (52%), Positives = 274/367 (74%), Gaps = 8/367 (2%)

Query: 14  AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPK 73
           ++ +  V+F+QF  + M +++K ALNQGMS YVLV YR  VATI+IAPFA + ++K RPK
Sbjct: 5   SQAFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPK 64

Query: 74  MTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVK 133
           MT+P+FAK+ ++SL EPVI QNLY+ GMKYTTATF  AMCNILPA+TF+MAWI RLEKV+
Sbjct: 65  MTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWILRLEKVR 124

Query: 134 IKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGA 193
           IKS  SQAKI+GT+ T GGAM MTL+KGPI++  W + R  +N  + G + + +   KG+
Sbjct: 125 IKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKER-ANNPQQRG-EISLQHTIKGS 182

Query: 194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
           ++I  GCF+W+CF+ILQA  LK+YPAELSLTA IC + + EGT++ L +ERGN  +W + 
Sbjct: 183 IMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAVWSIT 242

Query: 254 FDAKLLAVIYGG-FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
           +  KLLA +Y G F S  AY+I G +MK +GPVFV++F+PL MVI+A++ SF L E+LY 
Sbjct: 243 WGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYF 302

Query: 313 GRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNE--VTPPDQQM 370
           GR++GAV+I++GLY+V+WG+NKD + S S++ ++  P +Q+ ++ N T E     P+  +
Sbjct: 303 GRVLGAVVIIVGLYLVVWGKNKDENCSSSEDLKL--PTKQI-LEDNKTMETLTIEPNSCI 359

Query: 371 DRRNGGD 377
           D +N  +
Sbjct: 360 DLKNNNE 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100927|ref|XP_002312071.1| predicted protein [Populus trichocarpa] gi|222851891|gb|EEE89438.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/359 (54%), Positives = 254/359 (70%), Gaps = 4/359 (1%)

Query: 12  HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
             AKP+L VI +QF Y+ M  + K AL++GMS +VLV YR  VATI+IAPFA V +RK R
Sbjct: 9   DRAKPFLAVILLQFGYAGMFTMTKHALDEGMSQHVLVVYRHAVATIVIAPFALVFDRKVR 68

Query: 72  PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
           PKMTL IF KI L+ L EP I QNLYYTGMKYTTATFT AMCN+LPA  FLMAW  R+E+
Sbjct: 69  PKMTLSIFFKIMLLGLLEPTIDQNLYYTGMKYTTATFTSAMCNVLPAFAFLMAWALRIEQ 128

Query: 132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTK 191
           V I+  HSQAKI GTIVT GGAM MTL+KG  L  PW +    ++Q  +     ++D  K
Sbjct: 129 VNIRKMHSQAKIFGTIVTVGGAMLMTLVKGTQLDLPWTRG---YDQQASTSALTKQDPIK 185

Query: 192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL 251
           GAL+IA GC  W+ FIILQ+  LKSYP ELSLTA ICFM ++EG+++ + +ERGN   W 
Sbjct: 186 GALMIATGCVCWASFIILQSITLKSYPVELSLTAWICFMGTIEGSMVAVVMERGNPSAWS 245

Query: 252 LHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
           +  + KLLA +Y G + S   Y++ G +MKR+GPVFV++F+PL MVI+A+LGSFFL E L
Sbjct: 246 VGLNYKLLAAVYSGVICSGIGYYVQGLIMKRKGPVFVTAFSPLSMVIVAILGSFFLKEIL 305

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQ 369
            +GR+IGAV+IV GLY+VLWG++KD+ PS S +++      Q A +     +    DQ+
Sbjct: 306 CVGRVIGAVVIVTGLYLVLWGKSKDQPPSDSSDDKAEAIVTQTATEMQERTDPETVDQE 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100923|ref|XP_002312070.1| predicted protein [Populus trichocarpa] gi|222851890|gb|EEE89437.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/327 (58%), Positives = 251/327 (76%), Gaps = 2/327 (0%)

Query: 10  LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK 69
           L + A+ YL VIF+QF YS+MS++AKLALN GM P+VLVAYRM VA+IL  PFA VLER 
Sbjct: 7   LYNQARAYLLVIFVQFGYSVMSILAKLALNLGMKPHVLVAYRMAVASILFTPFALVLERN 66

Query: 70  TRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRL 129
           +RPKMT  +FAKIAL+S FEPV+ QNL+Y GMK TT TF +AMCNILPA+TF+MA IF+L
Sbjct: 67  SRPKMTWWMFAKIALLSFFEPVLDQNLFYAGMKITTPTFVLAMCNILPAMTFVMACIFKL 126

Query: 130 EKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDL 189
           EKV ++  H QAK++GT+VT GGAM + L  GP++  PW +      Q    +  + +DL
Sbjct: 127 EKVDMRRLHFQAKVVGTLVTIGGAMLLPLAHGPLINLPWTKRNFCRGQSAHSV--HIQDL 184

Query: 190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI 249
            KGA+++  GC +WS FIILQA +L+SYPA+LSL AL+C M +VE TIL  A+ER NT +
Sbjct: 185 IKGAVMVIFGCLSWSSFIILQAMILESYPAKLSLAALMCIMGTVESTILAFAVERANTAV 244

Query: 250 WLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEK 309
           W ++FD +LLA +YGG +S  AY+I G L+K RGPVF+S+ NPL +V++A+LGSF   EK
Sbjct: 245 WSVYFDIRLLAAVYGGILSGLAYYIFGLLVKERGPVFMSASNPLSLVMVAILGSFIFKEK 304

Query: 310 LYLGRIIGAVIIVIGLYMVLWGRNKDR 336
            YLGR IGA++IV+GLY+VLWG++KD+
Sbjct: 305 FYLGRAIGAIVIVLGLYLVLWGKSKDQ 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.913	0.935	0.568	2.9e-103
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.885	0.899	0.517	5.9e-96
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.926	0.934	0.478	2e-88
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.853	0.851	0.447	8.1e-76
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.882	0.840	0.441	7.3e-75
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.629	0.717	0.483	6.7e-73
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.872	0.858	0.448	2.5e-72
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.835	0.857	0.448	8.9e-70
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.919	0.951	0.405	6.3e-69
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.932	0.906	0.382	6.5e-67

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 203/357 (56%), Positives = 254/357 (71%)

Query:    15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
             KP++ V+ +QF Y+ +S+IAK ALNQGMSP+VL +YR +VATI IAPFA+ L+RK RPKM
Sbjct:     7 KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query:    75 TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
             TL IF KI L+ L EP I QNLYYTGMKYT+ATFT AM N+LPA  F+MAWIFRLEKV +
Sbjct:    67 TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query:   135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH-NQLETGIQNNEEDLTKGA 193
             K  HSQAKILGTIVT GGAM MT++KGP++  PW     +H +   TG++   +DLTKGA
Sbjct:   127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVK---QDLTKGA 183

Query:   194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
              LIA GC  W+ FI LQA  LKSYP ELSLTA ICF+ S+E TI+ L IERGN   W +H
Sbjct:   184 SLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIH 243

Query:   254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
              D+KLLA +YGG + S   Y++ G +MK RGPVFV++FNPL MVI+A+LGS  LAE ++L
Sbjct:   244 LDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFL 303

Query:   313 GRXXXXXXXXXXLYMVLWGRNKDR-SPSKSD-NNEVTQPDQQMAIKSNMTNEVTPPD 367
             GR          LY VLWG++KD  S S SD + E+     Q+ + S    ++   D
Sbjct:   304 GRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPLSTPQIVLPSKANAKMDTND 360

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 178/344 (51%), Positives = 246/344 (71%)

Query:    14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPK 73
             A+P++ ++F+Q  Y++MS++AKLALN+GMSP+VLVAYRM VA+ LI PFA +LER TRPK
Sbjct:     6 ARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTRPK 65

Query:    74 MTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVK 133
             +T  I  +IA++SLFEPV+ QNLYY+GMK TTATFT A+CN LPA+TF+MA +F+LEKV 
Sbjct:    66 LTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEKVT 125

Query:   134 IKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW-KQVRLLHNQLETGIQNNEEDLTKG 192
             I+  HSQAK++GT+V  GGAM MT +KG +++ PW    R L+          + D+ +G
Sbjct:   126 IERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIARG 185

Query:   193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252
             ++++ A CF+WSC+IILQA +L  Y AELSLTAL+C M  +E T++ L  ER N  +W +
Sbjct:   186 SIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKI 245

Query:   253 HFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
             + D  LLA IYGG VS  AY+++GW  K RGPVFVS+FNPL MV++A+L +F   EK+Y+
Sbjct:   246 NPDVTLLASIYGGLVSGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVYV 305

Query:   313 GRXXXXXXXXXXLYMVLWGRNKDRS----PSKSDNNEVTQPDQQ 352
             GR          +Y+VLWG++KD+     P+      V + DQQ
Sbjct:   306 GRVIGSVVIVIGIYLVLWGKSKDKGGMLQPNAGCAETVVKIDQQ 349

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 175/366 (47%), Positives = 248/366 (67%)

Query:    14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPK 73
             A+P++ ++ +Q   + M +++K  LN+GMS YVLV YR  VATI++APFAF  ++K RPK
Sbjct:    13 ARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPK 72

Query:    74 MTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVK 133
             MTL IF KI+L+ L EPVI QNLYY GMKYTTATF  AM N+LPA+TF++A+IF LE+VK
Sbjct:    73 MTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVK 132

Query:   134 IKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGA 193
             ++   S  K++GT+ T GGAM MTL+KGP+L   W +    HN   T I +      KGA
Sbjct:   133 LRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHS----AIKGA 188

Query:   194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
             +L+  GCF+++CF+ILQA  L++YPAELSLTA IC M ++EGT + L +E+GN   W + 
Sbjct:   189 VLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIG 248

Query:   254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
             +D KLL   Y G V S  AY++ G +MK RGPVFV++F+PL M+I+A++ +   AE++YL
Sbjct:   249 WDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYL 308

Query:   313 GRXXXXXXXXXXLYMVLWGRNKD---RSPSKSDNNEVTQPDQQMAI--KSNMTNEVTPPD 367
             GR          LY+V+WG+ KD    S  + D+ E  QP  +++   K N+ +EV    
Sbjct:   309 GRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDD-ESAQPKLELSGNGKDNVDHEVITIS 367

Query:   368 QQMDRR 373
             +Q ++R
Sbjct:   368 KQGEQR 373

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 150/335 (44%), Positives = 215/335 (64%)

Query:    12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR 71
             H  +PYL +IF+QF  +   ++    LNQG + YV++ YR +VA +++APFA + ERK R
Sbjct:     9 HKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVR 68

Query:    72 PKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEK 131
             PKMTL +  KI  +   EPV+ Q   Y GM  T+AT+T A+ NILP++TF++AWI R+EK
Sbjct:    69 PKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEK 128

Query:   132 VKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTK 191
             V I    S+AKI+GT+V  GGA+ MTL KGP++  PW    +  +Q + G  NN +D   
Sbjct:   129 VNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNM--DQ-QNGHTNNSQDHNN 185

Query:   192 ---GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG 248
                G LLI  GC AWS F +LQ+  +K+YPA+LSL+ALIC   +V+   + L +ER  +G
Sbjct:   186 WVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSG 245

Query:   249 IWLLHFDAKLLAVIYGGFVSC-TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLA 307
              W + +DA+L A +Y G VS    Y++ G +MK RGPVFV++FNPL M+++A++ SF L 
Sbjct:   246 -WAVGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILH 304

Query:   308 EKLYLGRXXXXXXXXXXLYMVLWGRNKDRSPSKSD 342
             E+++ G           LYMV+WG+ KD   S  D
Sbjct:   305 EQIHFGCVIGGAVIAAGLYMVVWGKGKDYEVSGLD 339

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 156/353 (44%), Positives = 228/353 (64%)

Query:     9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLER 68
             FL+ ++KPY  +I +QF Y+ M++I K++LN GMS YVLV YR  +AT +IAPFAF  ER
Sbjct:    12 FLT-SSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFER 70

Query:    69 KTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFR 128
             K +PK+T  IF ++ ++ L  PVI QN YY G+KYT+ TF+ AM N+LPA+TF++A +FR
Sbjct:    71 KAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFR 130

Query:   129 LEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLE---TGIQNN 185
             +E + +K    QAKI GT+VT  GAM MT+ KGPI++  W +   + +      T  +N+
Sbjct:   131 MEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNS 190

Query:   186 EED--LTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAI 242
               D    KG++L+     AW+   +LQA +LK+Y   +LSLT LICF+ +++   +T  +
Sbjct:   191 SSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVM 250

Query:   243 ERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVL 301
             E  N   W + +D  LLA  Y G V S  +Y++ G +MK+RGPVF ++F+PL MVI+AV+
Sbjct:   251 EH-NPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVM 309

Query:   302 GSFFLAEKLYLGRXXXXXXXXXXLYMVLWGRNKDRSPS-----KSDNN-EVTQ 348
             GSF LAEK++LG           LY VLWG+ K+   +     K D+N +VT+
Sbjct:   310 GSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKENQVTICELAKIDSNSKVTE 362

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 120/248 (48%), Positives = 169/248 (68%)

Query:    90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVT 149
             PVI+QNL+  GMKYTTATF +A+ N LPA+TF++A IFRLE VK +S  S AK++GT+ T
Sbjct:    62 PVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVTT 121

Query:   150 AGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIIL 209
              GG M MTL+KGP L   W +     N + T I ++     KGA+L+  GCF+++CF+IL
Sbjct:   122 VGGIMVMTLVKGPALDLFWTKGPSAQNTVGTDIHSS----IKGAVLVTIGCFSYACFMIL 177

Query:   210 QAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSC 269
             QA  LK+YPAELSL   IC + ++EG ++ L +E+GN  +W + +D KLL + Y G V C
Sbjct:   178 QAITLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIV-C 236

Query:   270 TA--YFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRXXXXXXXXXXLYM 327
             +A  Y+I G +MK RGPVFV++F PL M+++A++ S    E++YLGR          LY+
Sbjct:   237 SALGYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYL 296

Query:   328 VLWGRNKD 335
             V+WG+ KD
Sbjct:   297 VIWGKAKD 304

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 154/343 (44%), Positives = 208/343 (60%)

Query:    10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK 69
             L ++ KPYL +I MQF Y+ M +I  ++L  GM+ YVL  YR  +AT +IAPFA   ERK
Sbjct:     5 LMNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERK 64

Query:    70 TRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRL 129
              RPKMT  IF +IAL+   EPV+ QNLYY GM YT+ATF  A  N+LPA+TF++A IFRL
Sbjct:    65 IRPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRL 124

Query:   130 EKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKF-------PWKQVRLLHNQLETGI 182
             E V  K   S AK++GT++T  GA+ MTL KGPI+ F                +    G 
Sbjct:   125 ESVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGA 184

Query:   183 QNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAI 242
                ++    G L++    F W+ F ILQ+F LK YPAELSLT LIC M ++EGT ++L  
Sbjct:   185 AAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVT 244

Query:   243 ERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVL 301
              R +   W + FD+ L A  Y G + S  AY++ G +M+ RGPVFV++FNPL +VI A L
Sbjct:   245 VR-DLSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAAL 303

Query:   302 GSFFLAEKLYLGRXXXXXXXXXXLYMVLWGRNKDRSPSKSDNN 344
             G   L+E ++LG           LY V+WG+ KD+  +  D +
Sbjct:   304 GVVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDED 346

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 145/323 (44%), Positives = 200/323 (61%)

Query:    15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
             KP + +I +QF Y+ M +I  ++   GM+ ++L  YR VVATI+IAPFA +LERK RPKM
Sbjct:    10 KPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRPKM 69

Query:    75 TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
             T P+F +I  +   EP++ QNLYY GMK T+AT++ A  N LPA+TF+MA IFR+E V +
Sbjct:    70 TWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVNL 129

Query:   135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILK-FPWKQVRLLHNQLETGIQNNEEDLTKGA 193
             K T S AK++GT +T GGAM MTL KGP ++ F      L      T  +  +++   G 
Sbjct:   130 KKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGT 189

Query:   194 LLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLH 253
             L +      W+ F ILQ+F LK YPAELSL   IC M +V  TI +L + R +   W + 
Sbjct:   190 LAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVR-DVSAWKVG 248

Query:   254 FDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYL 312
              D+  LA +Y G V S  AY+I   +++ RGPVF +SF+P+ M+I A LG   LAEK++L
Sbjct:   249 MDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHL 308

Query:   313 GRXXXXXXXXXXLYMVLWGRNKD 335
             G           LY V+WG+ KD
Sbjct:   309 GSIIGAIFIVFGLYSVVWGKAKD 331

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 148/365 (40%), Positives = 218/365 (59%)

Query:    15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKM 74
             KP L +I +QF Y+ M +I  ++   GM  +VL  YR VVAT+++APFA + ERK RPKM
Sbjct:    10 KPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRPKM 69

Query:    75 TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKI 134
             TL IF ++  + + EP++ QNLYY G+K T+A++T A  N LPA+TF++A IFRLE V  
Sbjct:    70 TLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVNF 129

Query:   135 KSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNE--EDLTKG 192
             +  HS AK++GT++T GGAM MTL KGP ++     V+  HN    G  +    +    G
Sbjct:   130 RKVHSVAKVVGTVITVGGAMIMTLYKGPAIEI----VKAAHNSFHGGSSSTPTGQHWVLG 185

Query:   193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL 252
              + I      W+ F ILQ++ LK YPAELSL  LIC + ++   I +L + R +   W +
Sbjct:   186 TIAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVR-DPSAWKI 244

Query:   253 HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLY 311
               D+  LA +Y G V S  AY+I   ++K+RGPVF +SF+P+ M+I A LG+  LAEK++
Sbjct:   245 GMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIH 304

Query:   312 LGRXXXXXXXXXXLYMVLWGRNKDR-SPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQQM 370
             LG           LY V+WG++KD  +P    + ++    Q++ I +N+  +    D   
Sbjct:   305 LGSIIGAVFIVLGLYSVVWGKSKDEVNPL---DEKIVAKSQELPI-TNVVKQTNGHDVSG 360

Query:   371 DRRNG 375
                NG
Sbjct:   361 APTNG 365

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 142/371 (38%), Positives = 216/371 (58%)

Query:    10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK 69
             +S +AKPY  ++ +QF Y+ M+++ K  L++GMS YVLVAYR   AT  IAPFA + ERK
Sbjct:     5 MSESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERK 64

Query:    70 TRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRL 129
              R KMT PIF +I L++L  PVI QNLYY G+K T+ TF+ A+ NI+PA+T ++A +FR+
Sbjct:    65 VRSKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRM 124

Query:   130 EKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDL 189
             EKV+++      K++GT+VT  G++ M   KGP + F         + L         D 
Sbjct:   125 EKVEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINF-------FRSHLTAASSPPTADY 177

Query:   190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI 249
              K A+ +     +W+ F +LQA  LK Y A LS++ ++CFM +++   L   +E  N   
Sbjct:   178 LKAAVFLLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEH-NPSA 236

Query:   250 WLLHFDAKLLAVIYGGFVSCT-AYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAE 308
               + FD  LLA  Y G +S + AY++ G +M+R+GPVFV++FNPL +VI++++  F L +
Sbjct:   237 LNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQ 296

Query:   309 KLYLGRXXXXXXXXXXLYMVLWGRNKDRSPSKSDNNEVTQPDQQMAIKSNMTNEVTPPDQ 368
              +YLG           +Y VLWG++ D      D  E    D  +A+K    N       
Sbjct:   297 GIYLGGVIGVVVLMVGVYAVLWGKHVD-----DDGEETRHEDNVVAVKCCSGNNGLTIMP 351

Query:   369 QMDRRNGGDLE 379
             ++D  +  D+E
Sbjct:   352 KIDEADEEDVE 362

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80638	WTR14_ARATH	No assigned EC number	0.5691	0.9399	0.9625	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	5e-53
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	7e-14
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-11
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-07
TIGR03340	281	TIGR03340, phn_DUF6, phosphonate utilization assoc	4e-06
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	5e-06

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  179 bits (455), Expect = 5e-53
 Identities = 102/307 (33%), Positives = 177/307 (57%), Gaps = 8/307 (2%)

Query: 30  MSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLER-KTRPKMTLPIFAKIALVSLF 88
           +S + K+A ++G++ Y  + Y  ++A++L+ P  F   R ++ P +++ I +KI L+   
Sbjct: 28  ISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87

Query: 89  EP--VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGT 146
               VI+    Y G++Y+  T   A+ NI PALTF++A IFR+EKV  K   S AK++GT
Sbjct: 88  GSMYVITG---YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGT 144

Query: 147 IVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEED-LTKGALLIAAGCFAWSC 205
           I++  GA+ +    GP +        L   QL   + ++  D L  GALL   G F    
Sbjct: 145 ILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVS 204

Query: 206 FIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGG 265
           FI LQA ++  YPA  +++ L     S+  +++ L +E+ N  +W++HFD  L+ ++   
Sbjct: 205 FI-LQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMA 263

Query: 266 FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL 325
            ++   Y I  W ++ +GP++++ F PL ++I  V+G+ FL + LYLG +IG ++I +G 
Sbjct: 264 IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGF 323

Query: 326 YMVLWGR 332
           Y V+WG+
Sbjct: 324 YAVMWGK 330

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 71.1 bits (174), Expect = 7e-14
 Identities = 62/324 (19%), Positives = 120/324 (37%), Gaps = 35/324 (10%)

Query: 11  SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKT 70
                  L ++     + +  +  KLA+          A R ++A +L+ P   +     
Sbjct: 3   RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPR 60

Query: 71  RPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLE 130
             +  L  +  + L++L    +   L +  +KYT+A+    +  +LP  T L+A +  L 
Sbjct: 61  GLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG 120

Query: 131 KVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLT 190
           +       S  +ILG ++   G + + L  G                             
Sbjct: 121 ER-----LSLLQILGILLALAGVLLILLGGGGGGILSLL--------------------- 154

Query: 191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIW 250
            G LL  A    W+ +  L   L +  P  L+L   +     +   +L   +      I 
Sbjct: 155 -GLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLL---LLLFFLSGFGAPIL 210

Query: 251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL 310
              +   LL +  G F +  AY +  + ++  G   V+  + L  V  A+LG   L E L
Sbjct: 211 SRAW---LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPL 267

Query: 311 YLGRIIGAVIIVIGLYMVLWGRNK 334
              +++GA ++V+G+ +      +
Sbjct: 268 SPAQLLGAALVVLGVLLASLRARR 291

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)

Query: 25  FCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIAL 84
             +++  V +K  L + +SP    AYR ++A IL+      L RK    ++L     +  
Sbjct: 1   LSWALYFVFSKKLL-ERISPLTFTAYRFLIAGILLI-LLLFLLRKPFALLSLKAILALLY 58

Query: 85  VSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKIL 144
           + LF   +   LY+  +KY +A+    + ++ P  T +++ +   EK+ +K      ++L
Sbjct: 59  LGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLK------QLL 112

Query: 145 GTIVTAGGAMCMTL 158
           G ++   G + + L
Sbjct: 113 GIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 201 FAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLA 260
            +W+ + +    LL+     L+ TA    ++ +   +L L +        LL   A L  
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGI---LLILLLFLLRKPFALLSLKAILAL 56

Query: 261 VIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVI 320
           +  G F +   Y +  + +K       S    L  V   +L    L EKL L +++G V+
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 321 IVIGLYMVLW 330
           I++G+ ++L 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|234171 TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 247 TGIWLLHFDAK---------LLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVI 297
             +  L    +         L +   GG +   AY ++ W M R     V +     +V 
Sbjct: 191 FLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVF 250

Query: 298 IAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV 328
             VLG +FL E+ YL R++G  IIV GL ++
Sbjct: 251 AVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira. Length = 281

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 49/296 (16%), Positives = 93/296 (31%), Gaps = 42/296 (14%)

Query: 31  SVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP 90
            V+    L   +  Y  V  R++ A +L+ P         R    L       L+   + 
Sbjct: 5   GVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRRPPLKRLLRLL-------LLGALQI 57

Query: 91  VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTA 150
            +   LY+  +K         +  + P    L++ +   E+ +         +L   V  
Sbjct: 58  GVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL-------VLLAAVLG 110

Query: 151 GGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQ 210
                + L  G +   P                        G LL      +++   +L 
Sbjct: 111 LAGAVLLLSDGNLSINPA-----------------------GLLLGLGSGISFALGTVLY 147

Query: 211 AFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SC 269
             L+K    EL        +  +   +L         G        +  A++Y G + + 
Sbjct: 148 KRLVKKEGPELLQFTGWVLL--LGALLLLPFAWF--LGPNPQALSLQWGALLYLGLIGTA 203

Query: 270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL 325
            AYF+    +    P   S       ++  +LG   L E L L ++IG  +I+  +
Sbjct: 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.98
PRK11689	295	aromatic amino acid exporter; Provisional	99.98
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.92
COG2962	293	RarD Predicted permeases [General function predict	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.92
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.91
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.88
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.87
KOG2765	416	consensus Predicted membrane protein [Function unk	99.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.79
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.69
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.69
COG2510	140	Predicted membrane protein [Function unknown]	99.67
KOG2766	336	consensus Predicted membrane protein [Function unk	99.63
KOG1580	337	consensus UDP-galactose transporter related protei	99.62
KOG1581	327	consensus UDP-galactose transporter related protei	99.62
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.62
COG2510	140	Predicted membrane protein [Function unknown]	99.61
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.6
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.52
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.52
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.47
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.45
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.39
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.36
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.36
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.3
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.25
PRK13499	345	rhamnose-proton symporter; Provisional	99.24
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.24
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.22
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.22
PRK11272	292	putative DMT superfamily transporter inner membran	99.19
KOG1582	367	consensus UDP-galactose transporter related protei	99.19
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.16
PLN00411	358	nodulin MtN21 family protein; Provisional	99.1
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.09
PRK15430	296	putative chloramphenical resistance permease RarD;	99.07
PRK11689	295	aromatic amino acid exporter; Provisional	99.06
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.99
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.95
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.91
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.9
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.84
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.77
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.74
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.69
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.66
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.64
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.61
COG2962	293	RarD Predicted permeases [General function predict	98.53
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.47
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.35
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	98.21
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.17
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.06
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.01
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.96
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.87
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.84
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.76
PRK13499	345	rhamnose-proton symporter; Provisional	97.71
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.69
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.62
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.61
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.61
COG2076	106	EmrE Membrane transporters of cations and cationic	97.55
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.55
PRK11431	105	multidrug efflux system protein; Provisional	97.52
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.51
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.49
COG2076	106	EmrE Membrane transporters of cations and cationic	97.48
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.48
KOG2765	416	consensus Predicted membrane protein [Function unk	97.43
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.41
PRK11431	105	multidrug efflux system protein; Provisional	97.39
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.36
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.23
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.96
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.94
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.88
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.85
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.75
KOG1581	327	consensus UDP-galactose transporter related protei	96.47
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.42
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.26
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.74
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.47
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.39
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.03
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.78
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.13
KOG1580	337	consensus UDP-galactose transporter related protei	93.82
KOG1443	349	consensus Predicted integral membrane protein [Fun	92.83
KOG4831	125	consensus Unnamed protein [Function unknown]	91.43
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	91.13
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	89.71
KOG1582	367	consensus UDP-galactose transporter related protei	89.25
PRK02237	109	hypothetical protein; Provisional	88.91
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	87.09
KOG3912	372	consensus Predicted integral membrane protein [Gen	86.57
KOG2766	336	consensus Predicted membrane protein [Function unk	83.99
KOG4831	125	consensus Unnamed protein [Function unknown]	83.51
PRK02237	109	hypothetical protein; Provisional	82.82

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=3.5e-37  Score=288.24  Aligned_cols=327  Identities=29%  Similarity=0.595  Sum_probs=252.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERK-TRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~   89 (383)
                      +|+.++++.+++..+.++...++.|.+++.+++|..+.++|+.++.++++++.++++|+ .+++.+++++..+.+.|+++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999998876543 33445678889999999998


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK  169 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~  169 (383)
                       ...+.+++.+++|++++.++++.++.|+++.+++++++.|+++.++|.+++|++|++++++|+.++...+++.... ++
T Consensus        89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~  166 (358)
T PLN00411         89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-AS  166 (358)
T ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cc
Confidence             7788899999999999999999999999999999999533333333333334999999999999988544421100 00


Q ss_pred             hhhhhcc-cccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257          170 QVRLLHN-QLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG  248 (383)
Q Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  248 (383)
                      +....+. ++.........+...|++++++++++||+|+++.|+..++++++...++++..++.+...+..+..++.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~  246 (358)
T PLN00411        167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS  246 (358)
T ss_pred             ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            0000000 000000111223356999999999999999999999988887656777777777777776666665532333


Q ss_pred             cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      .|..........+++.++++.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++.
T Consensus       247 ~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~  326 (358)
T PLN00411        247 VWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAV  326 (358)
T ss_pred             cceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            33322222345577777777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCC
Q 042257          329 LWGRNKDRSPS  339 (383)
Q Consensus       329 ~~~~~~~~~~~  339 (383)
                      .+.++++.+++
T Consensus       327 ~~~~~~~~~~~  337 (358)
T PLN00411        327 MWGKANEEKDQ  337 (358)
T ss_pred             Hhhhhhhhhhc
Confidence            88666554433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=5.5e-31  Score=242.57  Aligned_cols=277  Identities=16%  Similarity=0.205  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042257           17 YLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNL   96 (383)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (383)
                      .+..++..++||.+.++.|... ++++|..++++|+.++.++++++...++++   ..+++++......|.++...++.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999985 799999999999999999998887654322   234677888888898876778889


Q ss_pred             HHhhc-cccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257           97 YYTGM-KYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH  175 (383)
Q Consensus        97 ~~~al-~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  175 (383)
                      ++.+. ++++++.++++.++.|+++.+++++ +|||+++++      ++|++++++|+.++...+               
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~~---------------  143 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSGG---------------  143 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcCc---------------
Confidence            99999 9999999999999999999999986 699999998      999999999998876211               


Q ss_pred             ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccc
Q 042257          176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFD  255 (383)
Q Consensus       176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  255 (383)
                               ..+....|++++++++++||.|.+..|+..++ + +...+.++...+.+...+.....+. +..  ..++.
T Consensus       144 ---------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  209 (292)
T PRK11272        144 ---------NLSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGE-RLT--ALPTL  209 (292)
T ss_pred             ---------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCC-ccc--ccCCH
Confidence                     11223579999999999999999999997543 2 3456677888887777776654332 111  11244


Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          256 AKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       256 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      ..|..+++++++ +.+++.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus       210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            578899999999 999999999999999999999999999999999999999999999999999999999999877544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=8.5e-31  Score=242.17  Aligned_cols=280  Identities=19%  Similarity=0.265  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      ..++.++++++||.+.++.|... ++++|..++++|+.++++.++++..   ++   +.+++   .....|++.....+.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~---~~---~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVA---RP---KVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhc---CC---CCchH---HHHHHHHHHHHHHHH
Confidence            34678899999999999999986 7899999999999998776655431   11   11222   234445555455666


Q ss_pred             HHHhhccc-cchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhh
Q 042257           96 LYYTGMKY-TTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLL  174 (383)
Q Consensus        96 ~~~~al~~-~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~  174 (383)
                      +++.+++| .+++.++++.++.|+++.+++++++|||++.++      +++++++++|+.++...+.             
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~~~~-------------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIEDSL-------------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhccccC-------------
Confidence            77889988 588999999999999999999999999999998      9999999999998873110             


Q ss_pred             cccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHHHHHHhhhcCCC--ccc
Q 042257          175 HNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE--LSLTALICFMSSVEGTILTLAIERGNT--GIW  250 (383)
Q Consensus       175 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~  250 (383)
                               ........|++++++++++|+.|.++.|+..++.+++  .....+....+.+.........+....  ..+
T Consensus       136 ---------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (299)
T PRK11453        136 ---------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL  206 (299)
T ss_pred             ---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence                     1112234799999999999999999999987654432  233445555554444433333332010  112


Q ss_pred             eeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          251 LLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       251 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      ...+...|..++++|++ +.++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++..
T Consensus       207 ~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        207 VTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence            22344679999999999 99999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hccC
Q 042257          330 WGRN  333 (383)
Q Consensus       330 ~~~~  333 (383)
                      +.++
T Consensus       287 ~~~~  290 (299)
T PRK11453        287 FGLR  290 (299)
T ss_pred             cchh
Confidence            7665

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=100.00  E-value=9.1e-31  Score=241.50  Aligned_cols=282  Identities=13%  Similarity=0.084  Sum_probs=212.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC--C-CCCHHHHHHHHHH
Q 042257            9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR--P-KMTLPIFAKIALV   85 (383)
Q Consensus         9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~   85 (383)
                      +|+++.+|.+++++++++||..+++.|..  .+++|.+++++|+.++.+++.++...+++...  + ..+++++. ....
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAV   78 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHH
Confidence            56678899999999999999999999986  57999999999999999888777655432110  0 11234433 3346


Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCccc
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILK  165 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~  165 (383)
                      +.++.+.++.++++|++++|++.++++.++.|+++++++++++|||++.++      ++|++++++|++++...++    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~----  148 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG----  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC----
Confidence            666668899999999999999999999999999999999999999999998      9999999999999873211    


Q ss_pred             CCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc
Q 042257          166 FPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER  244 (383)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  244 (383)
                                         ..      ..++++++++||.|.++.|+..++.. +....+.+....+.+...+..   ..
T Consensus       149 -------------------~~------~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  200 (296)
T PRK15430        149 -------------------SL------PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DS  200 (296)
T ss_pred             -------------------Cc------cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cC
Confidence                               10      14688899999999999888643221 112223333333333222111   11


Q ss_pred             CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHH
Q 042257          245 GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIG  324 (383)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g  324 (383)
                       +...+...+...+..++..|+.+.+++.++++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|
T Consensus       201 -~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~  279 (296)
T PRK15430        201 -STSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVA  279 (296)
T ss_pred             -CcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence             1111111111223444444555889999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhhcc
Q 042257          325 LYMVLWGR  332 (383)
Q Consensus       325 v~l~~~~~  332 (383)
                      +.+.....
T Consensus       280 ~~v~~~~~  287 (296)
T PRK15430        280 LAIFVMDA  287 (296)
T ss_pred             HHHHHHHH
Confidence            87776543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.98  E-value=6.2e-30  Score=235.63  Aligned_cols=281  Identities=12%  Similarity=0.055  Sum_probs=223.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257           10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (383)
                      ..++.+++.++++++++|+.++.+.|++. ++.||..+.++|++++.++++++...  ++  .+.+++++...+..|.+.
T Consensus         7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~   81 (293)
T PRK10532          7 KLPVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL   81 (293)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH
Confidence            34568899999999999999999999996 67999999999999999988866532  11  123467777788888875


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK  169 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~  169 (383)
                       ...+.+++++++|+|++.++++..+.|+++.+++.    |++.  +      ..++.++++|+.++...+.        
T Consensus        82 -~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~~~~~--------  140 (293)
T PRK10532         82 -GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLLPLGQ--------  140 (293)
T ss_pred             -HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheeeecCC--------
Confidence             78888999999999999999999999999988763    4432  2      5567788999988762111        


Q ss_pred             hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042257          170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI  249 (383)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  249 (383)
                                    +.......|++++++++++||+|.+..|+..++.+ +... .+....+.+...+.....+  ....
T Consensus       141 --------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~--~~~~  202 (293)
T PRK10532        141 --------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA--GEAL  202 (293)
T ss_pred             --------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc--Cccc
Confidence                          11122357999999999999999999999877655 4444 4556666666666555322  1111


Q ss_pred             ceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          250 WLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       250 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                         .+...|..++++|++ +.+++.++++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|++..
T Consensus       203 ---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~  279 (293)
T PRK10532        203 ---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS  279 (293)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence               122346667789999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCC
Q 042257          329 LWGRNKDRS  337 (383)
Q Consensus       329 ~~~~~~~~~  337 (383)
                      .+..+++.|
T Consensus       280 ~~~~~~~~~  288 (293)
T PRK10532        280 TLTIRREPK  288 (293)
T ss_pred             HhcCCCCCC
Confidence            877655444

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.98  E-value=2.9e-30  Score=238.03  Aligned_cols=285  Identities=14%  Similarity=0.097  Sum_probs=214.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI   92 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (383)
                      +.++++++++++++||.+++..|... ++++|..+.++|+.++.++++++..   +++.++   +. ++....+.++...
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~---~~~~~~---~~-~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVG---FPRLRQ---FP-KRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcc---cccccc---cc-HHHHHHHhHHHHH
Confidence            45678899999999999999999985 8899999999999999999886531   111111   11 2234445556577


Q ss_pred             HHHHHHhhccc----cchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257           93 SQNLYYTGMKY----TTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW  168 (383)
Q Consensus        93 ~~~~~~~al~~----~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~  168 (383)
                      .+.+++.++++    .+++.++++.++.|+++.+++++++|||+++++      ++|++++++|++++...+ +..+  +
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~~~-~~~~--~  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLGGD-NGLS--L  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheecCC-ccch--h
Confidence            78888877754    577888999999999999999999999999998      999999999999987321 1000  0


Q ss_pred             chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257          169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG  248 (383)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  248 (383)
                        .+.         .........|++++++++++||+|+++.||..++.+ +.....   ..+.+...+.... +. .. 
T Consensus       145 --~~~---------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~-~~-~~-  206 (295)
T PRK11689        145 --AEL---------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFL-SP-QP-  206 (295)
T ss_pred             --hhh---------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHH-hc-Cc-
Confidence              000         001112346999999999999999999999876654 343322   2233333332222 22 11 


Q ss_pred             cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      .. ..+...|..+++.++.+.++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++.
T Consensus       207 ~~-~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        207 AM-VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            11 12334677777777559999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhccC
Q 042257          329 LWGRN  333 (383)
Q Consensus       329 ~~~~~  333 (383)
                      .+.++
T Consensus       286 ~~~~~  290 (295)
T PRK11689        286 WLATR  290 (295)
T ss_pred             hhhHh
Confidence            65443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.97  E-value=1.3e-29  Score=229.97  Aligned_cols=257  Identities=18%  Similarity=0.245  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 042257           27 YSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTA  106 (383)
Q Consensus        27 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~  106 (383)
                      ||.+++..|..++...|+....+.|++.+.+++.++...+       .+++++.+....|.++..+++.++++|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            8899999999876788999999999999988887765432       235666778888888889999999999999999


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCc
Q 042257          107 TFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNE  186 (383)
Q Consensus       107 ~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (383)
                      ++++++.++.|+++.+++++++|||+++++      ++|+.++++|++++.. ++                       ..
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~-----------------------~~  123 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DG-----------------------NL  123 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CC-----------------------cc
Confidence            999999999999999999999999999998      9999999999999862 21                       12


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHH
Q 042257          187 EDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGG  265 (383)
Q Consensus       187 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  265 (383)
                      +....|+.++++++++|+.+.++.|+..++.+. +.....+.+..+.+...+.....+. . ..   .+...|..+++.+
T Consensus       124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~---~~~~~~~~~~~~~  198 (260)
T TIGR00950       124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-N-PQ---ALSLQWGALLYLG  198 (260)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-C-CC---cchHHHHHHHHHH
Confidence            234689999999999999999999998876652 2344556778888887777665332 1 11   1345677788889


Q ss_pred             HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 042257          266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL  325 (383)
Q Consensus       266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv  325 (383)
                      ++ +.+++.++++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus       199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            98 8999999999999999999999999999999999999999999999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=6.8e-29  Score=230.03  Aligned_cols=284  Identities=14%  Similarity=0.106  Sum_probs=221.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042257           18 LGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLY   97 (383)
Q Consensus        18 l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   97 (383)
                      ++.++..++-....+..|.+++.-..|...+++|+.++.+.+.+... .+.+++++.+++++..++..|+++ +....+.
T Consensus         5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~   82 (302)
T TIGR00817         5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTS   82 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            34445555555566789999744477999999999998877765521 122334556789999999999997 8889999


Q ss_pred             HhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhccc
Q 042257           98 YTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQ  177 (383)
Q Consensus        98 ~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  177 (383)
                      +++++|++++.++++.++.|+++++++++++|||++.++      ++|++++++|+.+..  .+                
T Consensus        83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~----------------  138 (302)
T TIGR00817        83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DT----------------  138 (302)
T ss_pred             HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CC----------------
Confidence            999999999999999999999999999999999999998      999999999998754  11                


Q ss_pred             ccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhh--cCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc--ccee-
Q 042257          178 LETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLK--SYPAELSLTALICFMSSVEGTILTLAIERGNTG--IWLL-  252 (383)
Q Consensus       178 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~-  252 (383)
                             ..+....|++++++++++|++|.++.||..+  +.+ +...+.+++..+.+.+.|.....+..+..  .+.. 
T Consensus       139 -------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~  210 (302)
T TIGR00817       139 -------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA  210 (302)
T ss_pred             -------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence                   1123357999999999999999999999887  554 58899999999999999888765421111  1100 


Q ss_pred             ----ccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257          253 ----HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM  327 (383)
Q Consensus       253 ----~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l  327 (383)
                          .....+...+..++. ....+.+++++++++++++.++..+++|+++++++++++||+++..+++|+++++.|+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l  290 (302)
T TIGR00817       211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL  290 (302)
T ss_pred             hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence                000112222233332 333345667899999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCC
Q 042257          328 VLWGRNKD  335 (383)
Q Consensus       328 ~~~~~~~~  335 (383)
                      +.+.|+++
T Consensus       291 ~~~~k~~~  298 (302)
T TIGR00817       291 YSRVKAQK  298 (302)
T ss_pred             HHHHhccC
Confidence            98765543

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.96  E-value=7.8e-27  Score=213.90  Aligned_cols=273  Identities=17%  Similarity=0.210  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           17 YLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLE-RKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      .++.++++++|+..++..|... ++.++  ..++++....++++++..++. ++.++..+++.+. ....+.++....+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHHHH
Confidence            5788999999999999999653 33344  347777777777777776532 2223333344444 44445555589999


Q ss_pred             HHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257           96 LYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH  175 (383)
Q Consensus        96 ~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  175 (383)
                      +++.++++.+++.++++.++.|+++.+++++++|||++.++      ++|+.+++.|+.++...+               
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~~~---------------  137 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGLSR---------------  137 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhccc---------------
Confidence            99999999999999999999999999999999999999998      999999999999887321               


Q ss_pred             ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHhhhcCCCcccee
Q 042257          176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELS---LTALICFMSSVEGTILTLAIERGNTGIWLL  252 (383)
Q Consensus       176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  252 (383)
                               ....+..|+.++++++++|++|.++.|+..++.++...   .+.+......+...+.....+. .  ....
T Consensus       138 ---------~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~  205 (281)
T TIGR03340       138 ---------FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-R--SMFP  205 (281)
T ss_pred             ---------ccccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc-c--chhh
Confidence                     11122468889999999999999998876444332111   2222222221111111111111 1  1111


Q ss_pred             ccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257          253 HFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM  327 (383)
Q Consensus       253 ~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l  327 (383)
                       ....+..+++.+.+ +.++|.++++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+.+
T Consensus       206 -~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       206 -YARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence             22244555666777 999999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=1.8e-26  Score=217.02  Aligned_cols=285  Identities=15%  Similarity=0.138  Sum_probs=223.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMS-PYVLVAYRMVVATILIAPFAFVLERKTRPKM--TLPIFAKIALVSLFE   89 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   89 (383)
                      +.+..++.+....+-.......|..+ +.+| |+.++++|++++.+++..++.. +.+++++.  .++++..++..|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45566667777777777888999987 6689 9999999999998876555432 22222333  345788899999998


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK  169 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~  169 (383)
                      . ..+...+.|+++++++.++++.++.|+++++++++++|||++.++      +++++++++|+++.+.  +        
T Consensus       125 ~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~--~--------  187 (350)
T PTZ00343        125 L-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV--K--------  187 (350)
T ss_pred             H-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec--c--------
Confidence            4 446667799999999999999999999999999999999999998      9999999999999873  1        


Q ss_pred             hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHHHHHHHHHhhh
Q 042257          170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP------AELSLTALICFMSSVEGTILTLAIE  243 (383)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~  243 (383)
                                     ..+....|++++++|+++++++.++.|+..++.+      ++.....++...+.++.+|+....|
T Consensus       188 ---------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e  252 (350)
T PTZ00343        188 ---------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE  252 (350)
T ss_pred             ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                           1122467999999999999999999999887643      2345666678899999988887655


Q ss_pred             cCC-Cccce----eccchhHHHHHHHHHHHHHHHHHHHH----HHhccCccceeecchhHHHHHHHHHHHHhcccccchh
Q 042257          244 RGN-TGIWL----LHFDAKLLAVIYGGFVSCTAYFIMGW----LMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGR  314 (383)
Q Consensus       244 ~~~-~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~----a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~  314 (383)
                      ... ...+.    ......+..+++..+.+++.+++++.    +++++++.+.+...+++|+++++++++++||+++..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~  332 (350)
T PTZ00343        253 GKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG  332 (350)
T ss_pred             hHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh
Confidence            311 11110    00111223344433338888888884    9999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhc
Q 042257          315 IIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       315 ~~G~~li~~gv~l~~~~  331 (383)
                      ++|+++++.|++++++.
T Consensus       333 ~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        333 YLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999998764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=4e-26  Score=209.24  Aligned_cols=302  Identities=14%  Similarity=0.178  Sum_probs=241.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMS-PYVLVAYRMVVATILIAPFAFVLERK-TRPKMTLPIFAKIALVSLF   88 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~   88 (383)
                      ++.++.+++.-+.+++-..+.+.+..+.+.+.+ |....++.+....++..++..+++++ ...+..+++|++.++.+++
T Consensus         9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen    9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence            345667788888888888888888887555555 88888888888888877776665433 2222334566777888888


Q ss_pred             HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257           89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW  168 (383)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~  168 (383)
                      - ..++.+.+.|++|++.+.++++.++..+++++++++++|+|+++.+      ++|+++++.|++++...+...     
T Consensus        89 D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~-----  156 (334)
T PF06027_consen   89 D-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLS-----  156 (334)
T ss_pred             H-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeecccc-----
Confidence            7 8999999999999999999999999999999999999999999998      999999999999988654321     


Q ss_pred             chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257          169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG  248 (383)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  248 (383)
                                 ..++....+...|++++++|+++||+++++.++..++.+ ......+..+.+.++..+...+.|..+.+
T Consensus       157 -----------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~  224 (334)
T PF06027_consen  157 -----------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE  224 (334)
T ss_pred             -----------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh
Confidence                       011124556789999999999999999999999999876 57888889999999998888887764554


Q ss_pred             cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      ...+.+ ..+..++.-++..+.-|.+....++..+|+..+.-..+..+++++++++++|+++++..++|.++|++|.+++
T Consensus       225 ~~~w~~-~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy  303 (334)
T PF06027_consen  225 SIHWTS-QVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY  303 (334)
T ss_pred             ccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence            443322 2233333333335666777888999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCC
Q 042257          329 LWGRNKDRS  337 (383)
Q Consensus       329 ~~~~~~~~~  337 (383)
                      ...+++.++
T Consensus       304 ~~~~~~~~~  312 (334)
T PF06027_consen  304 NLAESPEEE  312 (334)
T ss_pred             EccCCcccc
Confidence            877765443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=3.7e-25  Score=200.20  Aligned_cols=248  Identities=13%  Similarity=0.140  Sum_probs=184.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKT-----RPKMTLP-IFAKIALVSLF   88 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~   88 (383)
                      +|++++++++++||.+.++.|..  .+++|.+++++|++++.++++++...++++.     .++.+++ .+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            58999999999999999999985  4699999999999999988877654433211     1111222 23445666666


Q ss_pred             HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257           89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW  168 (383)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~  168 (383)
                      . ..++.++++|++++++++++++.++.|+++++++++++|||++.++      +++++++++|++++...++       
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence            4 8999999999999999999999999999999999999999999998      9999999999998863211       


Q ss_pred             chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 042257          169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTG  248 (383)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  248 (383)
                                      . .     ..++++++++|+.|.+..|+..++ +. .... .......+...+.... .. ...
T Consensus       146 ----------------~-~-----~~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~-~~-~~~  198 (256)
T TIGR00688       146 ----------------S-L-----PWEALVLAFSFTAYGLIRKALKNT-DL-AGFC-LETLSLMPVAIYYLLQ-TD-FAT  198 (256)
T ss_pred             ----------------C-c-----hHHHHHHHHHHHHHHHHHhhcCCC-Cc-chHH-HHHHHHHHHHHHHHHH-hc-cCc
Confidence                            1 0     135788999999999999987543 21 2211 1122222222222111 11 111


Q ss_pred             cceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHH
Q 042257          249 IWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFF  305 (383)
Q Consensus       249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~  305 (383)
                      .....+...|..++..|+++.++|.++++++|+.++++++++.+++|+++.++++++
T Consensus       199 ~~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       199 VQQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            111112237888888887788999999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=1.4e-22  Score=186.55  Aligned_cols=282  Identities=21%  Similarity=0.335  Sum_probs=215.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQG-MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (383)
                      ++...+....++..+.|+......|... ++ .++....+.|...+.++..+.....+... .+..++ +......+.++
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~   79 (292)
T COG0697           3 RALLLGLLALLLWGLLWGLSFIALKLAV-ESLDPFLFAAALRFLIAALLLLPLLLLEPRGL-RPALRP-WLLLLLLALLG   79 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhcccc-cccccc-hHHHHHHHHHH
Confidence            3456678888888999999999999985 54 67777777799999888443333221111 111112 34566667777


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHH-HHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAW-IFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW  168 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~-~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~  168 (383)
                      ....+.+++.++++++++.++++.++.|+++.++++ +++|||+++++      ++++.+++.|++++...+..      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~------  147 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGG------  147 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCc------
Confidence            799999999999999999999999999999999997 66799999998      99999999999999842211      


Q ss_pred             chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHHHHHHhhhcCCC
Q 042257          169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTA-LICFMSSVEGTILTLAIERGNT  247 (383)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~  247 (383)
                                     .... ...|+.++++++++++++.+..|+.. +.+ +..... +...  .............  .
T Consensus       148 ---------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--~  205 (292)
T COG0697         148 ---------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSG--F  205 (292)
T ss_pred             ---------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcc--c
Confidence                           0111 57899999999999999999999887 433 334343 3333  1111111111111  1


Q ss_pred             ccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHH
Q 042257          248 GIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLY  326 (383)
Q Consensus       248 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~  326 (383)
                      .  .......+..+.+.|++ +++++.++++++++.++...+++.+++|+++.++++++++|+++..+++|+++++.|+.
T Consensus       206 ~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~  283 (292)
T COG0697         206 G--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVL  283 (292)
T ss_pred             c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence            1  22233568888888999 77899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhc
Q 042257          327 MVLWG  331 (383)
Q Consensus       327 l~~~~  331 (383)
                      +....
T Consensus       284 l~~~~  288 (292)
T COG0697         284 LASLR  288 (292)
T ss_pred             HHhcc
Confidence            88766

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=177.45  Aligned_cols=282  Identities=13%  Similarity=0.147  Sum_probs=230.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC--C-CCCHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTR--P-KMTLPIFAKIALVSL   87 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~   87 (383)
                      ++..+|+++.+.+.++||..+.+.|..  ++.++.++...|.+.+.++++.+....++...  . ..+++.+..+.+.++
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~   80 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL   80 (293)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence            456789999999999999999999999  79999999999999999998877766543321  1 123455565666666


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP  167 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~  167 (383)
                      +. ..++..|.+|.++...-++++-++.+|++.++++.+++|||+++.|      +++++++.+|+....+..|.     
T Consensus        81 li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~-----  148 (293)
T COG2962          81 LI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGS-----  148 (293)
T ss_pred             HH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCC-----
Confidence            54 9999999999999999999999999999999999999999999999      99999999999998875442     


Q ss_pred             cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 042257          168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNT  247 (383)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  247 (383)
                                          ..    ..++.=+++|++|..+-|+.  +.+ ..+-....+..-.+..+...++.++ ..
T Consensus       149 --------------------lp----wval~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~-~~  200 (293)
T COG2962         149 --------------------LP----WVALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLAD-SG  200 (293)
T ss_pred             --------------------Cc----HHHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhc-Cc
Confidence                                11    34555688999999875554  233 3566666677777776666666654 22


Q ss_pred             ccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257          248 GIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM  327 (383)
Q Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l  327 (383)
                      +.....+...+..++..|.++.+...++..+.|+++-+..+.++|.+|.+-.+++++++||+++..+++..+.|.+|+.+
T Consensus       201 ~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l  280 (293)
T COG2962         201 QFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALAL  280 (293)
T ss_pred             hhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            21222344578888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCC
Q 042257          328 VLWGRNK  334 (383)
Q Consensus       328 ~~~~~~~  334 (383)
                      +.+..-+
T Consensus       281 ~~~d~l~  287 (293)
T COG2962         281 FSIDGLY  287 (293)
T ss_pred             HHHHHHH
Confidence            9876543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.92  E-value=7.4e-23  Score=173.71  Aligned_cols=273  Identities=14%  Similarity=0.096  Sum_probs=226.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      ++++++.+.+.-=....+.|.++ +...+...+.+|..++.++++++..    +.+.+..+++|+.....|+.. ...|.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~R----Pwr~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFR----PWRRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhh----HHHhccChhhhHHHHHHHHHH-HHHHH
Confidence            68888888888888888999997 8899999999999999999987663    333566788899999999987 99999


Q ss_pred             HHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhc
Q 042257           96 LYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLH  175 (383)
Q Consensus        96 ~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  175 (383)
                      +||.+++.+|.+.+..+.++.|+.+.+++-    +|  .++      .+.+.+++.|+.++.- .+              
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d------~vwvaLAvlGi~lL~p-~~--------------  139 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRD------FVWVALAVLGIWLLLP-LG--------------  139 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--hhh------HHHHHHHHHHHHhhee-cc--------------
Confidence            999999999999999999999998776642    22  244      7778888999988872 22              


Q ss_pred             ccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccc
Q 042257          176 NQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFD  255 (383)
Q Consensus       176 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  255 (383)
                             +.....+..|..+++.++.||+.|.+..||..+..+ ....+...+.++.++.+|+.....   ...+  .++
T Consensus       140 -------~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~a---g~~l--~~p  206 (292)
T COG5006         140 -------QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQA---GPAL--FSP  206 (292)
T ss_pred             -------CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhc---chhh--cCh
Confidence                   135566789999999999999999999999876544 367788899999999999887322   1122  233


Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          256 AKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       256 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      .-...-+..|++ +.+.|.+-..++++.+....+.+.+++|.++.+.|++++||.++..||.|++.|+.+..-..+..+|
T Consensus       207 ~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         207 SLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            355666777888 9999999999999999999999999999999999999999999999999999999988766654444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.91  E-value=7e-26  Score=193.14  Aligned_cols=292  Identities=16%  Similarity=0.165  Sum_probs=220.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI   92 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (383)
                      ..+|.++..++.++-..+.+..|..   ..+|....-.|++.-.+.-+|..+.++.....+...|  .++++.|+.| ..
T Consensus        36 p~~gl~l~~vs~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG-~t  109 (346)
T KOG4510|consen   36 PNLGLLLLTVSYFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMG-FT  109 (346)
T ss_pred             CccCceehhhHHHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhh-hh
Confidence            4567777777744444444444444   6889999999987777777766555444331222222  3467788888 67


Q ss_pred             HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhh
Q 042257           93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVR  172 (383)
Q Consensus        93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~  172 (383)
                      +..+.|+|++|++.++++++.+..|+|+.+++|+++|||.++.+      .++..+.+.|+++++-   |..-+.     
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvR---PpFlFG-----  175 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVR---PPFLFG-----  175 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEec---CCcccC-----
Confidence            77788899999999999999999999999999999999999998      9999999999999873   221111     


Q ss_pred             hhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee
Q 042257          173 LLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLL  252 (383)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  252 (383)
                        +++..+. +.....+.+|...++.++++.|...++.|+..|+.+.-+. +.|..+++.+...+....     ...+.+
T Consensus       176 --~~t~g~~-~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~ms-vsyf~~i~lV~s~I~~~~-----ig~~~l  246 (346)
T KOG4510|consen  176 --DTTEGED-SSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMS-VSYFSLITLVVSLIGCAS-----IGAVQL  246 (346)
T ss_pred             --CCccccc-cccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEE-ehHHHHHHHHHHHHHHhh-----ccceec
Confidence              1111111 1123455678899999999999999999999888875333 444455555555444432     223443


Q ss_pred             cc-chhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257          253 HF-DAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       253 ~~-~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      +. ..+|+.++.+|+++++++.+...++++..+..++++.+++.+++.++++++|+|.|+++.|+|+++|+.+.+.....
T Consensus       247 P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~  326 (346)
T KOG4510|consen  247 PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK  326 (346)
T ss_pred             CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence            33 46788888899999999999999999999999999999999999999999999999999999999999998877765


Q ss_pred             cC
Q 042257          332 RN  333 (383)
Q Consensus       332 ~~  333 (383)
                      |.
T Consensus       327 kw  328 (346)
T KOG4510|consen  327 KW  328 (346)
T ss_pred             HH
Confidence            54

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.88  E-value=1.1e-20  Score=173.45  Aligned_cols=279  Identities=16%  Similarity=0.157  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      ++++.++++++||...+..|..  .+.++.++.  |..++.+++..+....+.+.  ...++.+..-++.|++ ...++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~--~g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKI--GGGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhcc--CCCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            6789999999999999999998  378887765  67777776665555433211  2224444444444444 588999


Q ss_pred             HHHhhccccchhhHHHhhh-hhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhh
Q 042257           96 LYYTGMKYTTATFTVAMCN-ILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLL  174 (383)
Q Consensus        96 ~~~~al~~~~~~~a~~l~~-~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~  174 (383)
                      +++.++++++.+.+.++.+ +.+++..+.+.+++||+.+.++  ...-.+|++++++|++++...+++.           
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~-----------  141 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKS-----------  141 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEeccccc-----------
Confidence            9999999999999999987 8899999999999999997762  0111788999999988875322110           


Q ss_pred             cccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH---HHHHHHHHHHHhhhcCCCccce
Q 042257          175 HNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICF---MSSVEGTILTLAIERGNTGIWL  251 (383)
Q Consensus       175 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~  251 (383)
                            .++....+..+|++++++++++|+.|.+..|+.  +.+ |....+.+..   .+.++..+...   . . .++ 
T Consensus       142 ------~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~~---~-~-~~~-  206 (290)
T TIGR00776       142 ------AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGHI---L-A-KPL-  206 (290)
T ss_pred             ------cccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHHh---c-c-cch-
Confidence                  000000233679999999999999999999976  344 4555333333   33322222110   1 1 112 


Q ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCccceeecchhHHHHHHHHHHHHhcccccchhh----hhHHHHHHHHH
Q 042257          252 LHFDAKLLAVIYGGFVSCTAYFIMGWLMK-RRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRI----IGAVIIVIGLY  326 (383)
Q Consensus       252 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~gv~  326 (383)
                       .+...+..++ .|++..+++.+|..+.+ +.+++..+.+.+.+|+.+.++++++++|+.++.++    +|+++++.|+.
T Consensus       207 -~~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~  284 (290)
T TIGR00776       207 -KKYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN  284 (290)
T ss_pred             -HHHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence             2223344444 78889999999999999 99999999999999999999999999999999999    99999999998


Q ss_pred             Hhhhc
Q 042257          327 MVLWG  331 (383)
Q Consensus       327 l~~~~  331 (383)
                      +....
T Consensus       285 l~~~~  289 (290)
T TIGR00776       285 ILGIG  289 (290)
T ss_pred             HHhcc
Confidence            87543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.87  E-value=7e-20  Score=169.53  Aligned_cols=268  Identities=14%  Similarity=0.175  Sum_probs=214.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHH
Q 042257           43 SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFL  122 (383)
Q Consensus        43 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~l  122 (383)
                      .|..+++.++....+...+.....+++..++   ..+..++..+++. .++..+.+.|++|+|.+...++.+..|+++++
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi  106 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRK---IPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMI  106 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCc---ChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence            4889999999999988887666544222233   3345566677776 88899999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHH
Q 042257          123 MAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFA  202 (383)
Q Consensus       123 l~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~  202 (383)
                      ++.+++|+|.+.++      +.++++..+|+.+....+.+.               ++..+........|+++.+++.++
T Consensus       107 ~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~---------------~~~~~~~~~~~~~G~~ll~~sl~~  165 (303)
T PF08449_consen  107 LGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSS---------------SSSSNSSSFSSALGIILLLLSLLL  165 (303)
T ss_pred             HHHHhcCccccHHH------HHHHHHHHhhHheeeeccccc---------------ccccccccccchhHHHHHHHHHHH
Confidence            99999999999998      999999999999988654321               011111222223499999999999


Q ss_pred             HHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHh--hhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHH
Q 042257          203 WSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLA--IER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWL  278 (383)
Q Consensus       203 ~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a  278 (383)
                      .++..+++++..++++ ++...+++.+..+.+...+....  .+. .+...+....+..+..++...+.+.+++.+.++.
T Consensus       166 ~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~  245 (303)
T PF08449_consen  166 DAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYL  245 (303)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998776 45789999999999988888776  221 0111222223345666666666688888899999


Q ss_pred             HhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257          279 MKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD  335 (383)
Q Consensus       279 ~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~  335 (383)
                      .++.++...+++..++.+++++++++++++++++.+|+|.++++.|..++.+.++|+
T Consensus       246 ~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  246 IKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999999999999999877764

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.82  E-value=4.8e-19  Score=158.81  Aligned_cols=301  Identities=11%  Similarity=0.151  Sum_probs=231.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHH----Hhh--hcC-C-------C--
Q 042257           10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGM--SPYVLVAYRMVVATILIAPFA----FVL--ERK-T-------R--   71 (383)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~r~~~~~~~~~~~~----~~~--~~~-~-------~--   71 (383)
                      ..+...|++++++..++|-.+.-+.+..++++.  .|+..++.....-.+.+.++.    .++  .++ .       .  
T Consensus         9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~   88 (416)
T KOG2765|consen    9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA   88 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence            345678999999999999999999999885443  488777665544433333322    110  000 0       0  


Q ss_pred             ------------------------------------------------C--C-CCH-----------HHHHHH-HHHHHH
Q 042257           72 ------------------------------------------------P--K-MTL-----------PIFAKI-ALVSLF   88 (383)
Q Consensus        72 ------------------------------------------------~--~-~~~-----------~~~~~~-~~~g~~   88 (383)
                                                                      .  + ..+           ++..+. +....+
T Consensus        89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l  168 (416)
T KOG2765|consen   89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL  168 (416)
T ss_pred             hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence                                                            0  0 011           123333 333444


Q ss_pred             HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc
Q 042257           89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW  168 (383)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~  168 (383)
                       ..++++.+..|+.+++++..+++.++.-+|+..++.++.+||++...      ++++++.+.|++++...+..      
T Consensus       169 -WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiVt~~~s~------  235 (416)
T KOG2765|consen  169 -WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIVTMGDSK------  235 (416)
T ss_pred             -HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEEEecccc------
Confidence             48899999999999999999999999999999999999999999985      99999999999998754321      


Q ss_pred             chhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHHHHHHHHhhhcC
Q 042257          169 KQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAEL---SLTALICFMSSVEGTILTLAIERG  245 (383)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~  245 (383)
                                 ..++........|.++++++++.||+|.++.||...+.+..+   ....+..++..++++|..++....
T Consensus       236 -----------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~  304 (416)
T KOG2765|consen  236 -----------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF  304 (416)
T ss_pred             -----------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence                       111234556689999999999999999999999887764222   233355556667777777766654


Q ss_pred             CCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHH
Q 042257          246 NTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIG  324 (383)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g  324 (383)
                      ..+.+..++..+...++..+++ ++++-++|.+|.-.+++..++..+.++...+++.+.++-+.++++.+++|...|+.|
T Consensus       305 ~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~  384 (416)
T KOG2765|consen  305 GEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVG  384 (416)
T ss_pred             ccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            6667778888888888889999 999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHhhhccCC
Q 042257          325 LYMVLWGRNK  334 (383)
Q Consensus       325 v~l~~~~~~~  334 (383)
                      .+..++....
T Consensus       385 Fv~vn~~~~~  394 (416)
T KOG2765|consen  385 FVIVNISSEN  394 (416)
T ss_pred             Hhheeccccc
Confidence            9988876543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.79  E-value=3.8e-19  Score=161.22  Aligned_cols=286  Identities=12%  Similarity=0.109  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042257           19 GVIFMQFCYSIMSVIAKLALN--QGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNL   96 (383)
Q Consensus        19 ~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (383)
                      +.....++-.......|..++  ..--|..++.++..++.+..+........+..+..+...+...+.+|++. +++..+
T Consensus        21 ~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~   99 (316)
T KOG1441|consen   21 AFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVL   99 (316)
T ss_pred             HHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHh
Confidence            333444444445667788775  33458888888777777777766555444433333456677788889887 999999


Q ss_pred             HHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcc
Q 042257           97 YYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHN  176 (383)
Q Consensus        97 ~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~  176 (383)
                      -..|+.+.+++.++.+..+.|++++++++++.+|+.+...      +..++....|+.+...                  
T Consensus       100 ~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~------------------  155 (316)
T KOG1441|consen  100 GNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV------------------  155 (316)
T ss_pred             cchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee------------------
Confidence            9999999999999999999999999999999999999998      9999999999988773                  


Q ss_pred             cccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CC-chhHHHHHHHHHHHHHHH-HHHHhhhcCCCcc--c
Q 042257          177 QLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKS--YP-AELSLTALICFMSSVEGT-ILTLAIERGNTGI--W  250 (383)
Q Consensus       177 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~--~  250 (383)
                             .....+..|.+.++++.+..+..+++.|+..++  .+ ++++...++...+.+.++ |.....++ +...  .
T Consensus       156 -------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~  227 (316)
T KOG1441|consen  156 -------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFL  227 (316)
T ss_pred             -------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc-cceeeee
Confidence                   244566799999999999999999999999853  22 468999999999999888 77665554 2220  0


Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      ...........++..++...-+...+..+.+++|.+.++.+.+.-++.++.|+++|+++.++.+.+|+++.++|+++|.+
T Consensus       228 ~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  228 TAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            00111223444444555666777888899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q 042257          331 GRNKDRS  337 (383)
Q Consensus       331 ~~~~~~~  337 (383)
                      .|.++++
T Consensus       308 ~k~~~~~  314 (316)
T KOG1441|consen  308 AKLKEKK  314 (316)
T ss_pred             Hhhhhhc
Confidence            8876654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=8.5e-14  Score=125.57  Aligned_cols=298  Identities=12%  Similarity=0.160  Sum_probs=217.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHhhhcC----CCCC------CCHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLALNQG---MSPYVLVAYRMVVATILIAPFAFVLERK----TRPK------MTLPIFAK   81 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~   81 (383)
                      .-.+.++...+.++......|+.-..+   +.|...+++--++-.+++....+...+.    ....      ..+++..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            567778888889999999999985344   6688888888888877777766654322    1111      23556677


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcC
Q 042257           82 IALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKG  161 (383)
Q Consensus        82 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~  161 (383)
                      ..+.+++- ++.+-++|.++.+.+++..++..++-.+.|+++.++++++|++++|      |.++++.+.|+.++.....
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence            78888886 8877899999999999999999999999999999999999999999      9999999999999874332


Q ss_pred             CcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHHHH
Q 042257          162 PILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTAL-ICFMSSVEGTILTL  240 (383)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  240 (383)
                      +..+              +.+.....+...|....+.++.+-++..++.++.+|+.+.+..+.-. ..++|.+..+...+
T Consensus       168 ~~~~--------------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~  233 (345)
T KOG2234|consen  168 SPTG--------------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTIL  233 (345)
T ss_pred             CCCC--------------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            2110              01023456678999999999999999999999999887644433333 33444444444443


Q ss_pred             hhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHH
Q 042257          241 AIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAV  319 (383)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~  319 (383)
                      ..+. +...|.-.. ..|-...+.-++ .+++-.+...-+|+.+-..=+....+..+++.+.++.+++-+|+....+|..
T Consensus       234 ~~d~-~~i~~~gff-~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~  311 (345)
T KOG2234|consen  234 LQDG-EAINEYGFF-YGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL  311 (345)
T ss_pred             hccc-cccccCCcc-ccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            3322 111111100 123333333334 6666667777788888777777778899999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCC
Q 042257          320 IIVIGLYMVLWGRNKD  335 (383)
Q Consensus       320 li~~gv~l~~~~~~~~  335 (383)
                      +++.++.++...+.++
T Consensus       312 lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  312 LVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHhhcCCccc
Confidence            9999999999655554

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.3e-14  Score=127.38  Aligned_cols=295  Identities=13%  Similarity=0.101  Sum_probs=229.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042257           10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVA--YRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSL   87 (383)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   87 (383)
                      .+....+++..+.-++.=-++.+..|..+...--|..+..  ++.+.+.+.+...-..+ --..++.+++..++.+.+.+
T Consensus         7 ~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~   85 (314)
T KOG1444|consen    7 SKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSL   85 (314)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHH
Confidence            3344456777777777777788899988754444555555  88888877776544332 22245677888888888888


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP  167 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~  167 (383)
                      +. .++...-..+++|+++...+++....|+++++....++|.|++...      +.++...++|......         
T Consensus        86 lf-~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~---------  149 (314)
T KOG1444|consen   86 LF-VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF---------  149 (314)
T ss_pred             HH-HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc---------
Confidence            86 7778888899999999999999999999999999999998888887      9999999888888763         


Q ss_pred             cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042257          168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERGN  246 (383)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~  246 (383)
                                      .+...+..|+.+++...++-+.+.+..|+..+..+ .....+++.++.+...+....++++..+
T Consensus       150 ----------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~  213 (314)
T KOG1444|consen  150 ----------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD  213 (314)
T ss_pred             ----------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH
Confidence                            23344456999999999999999999998776644 3477889999999999888887776422


Q ss_pred             Cccce---eccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHH
Q 042257          247 TGIWL---LHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVI  323 (383)
Q Consensus       247 ~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~  323 (383)
                      .....   ......+..+...+++++.-.++..+..+..+++..++.+..+...+.+...++++++.++...+|..+-++
T Consensus       214 ~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~  293 (314)
T KOG1444|consen  214 ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFF  293 (314)
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhh
Confidence            00111   122334566666566677778888999999999999999988888888888888888999999999999999


Q ss_pred             HHHHhhhccCCCCC
Q 042257          324 GLYMVLWGRNKDRS  337 (383)
Q Consensus       324 gv~l~~~~~~~~~~  337 (383)
                      |..++++.+.++++
T Consensus       294 ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  294 GGVLYSYATFRKKK  307 (314)
T ss_pred             hhhHHhhhhhhhcc
Confidence            99999987766544

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.67  E-value=3.4e-16  Score=119.40  Aligned_cols=135  Identities=18%  Similarity=0.274  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP-KMTLPIFAKIALVSLFEPVIS   93 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~   93 (383)
                      ...++++++++++|+..++.|... ++.||...++.|.....++++.+....++...+ ..+.|.|..+.+.|+.+ .++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            357899999999999999999996 999999999999999999999888876654322 24678888888888776 999


Q ss_pred             HHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257           94 QNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT  157 (383)
Q Consensus        94 ~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~  157 (383)
                      +.+||.|++..+++.+.++-.+.|+++++++++++|||++..+      ++|+++..+|++++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999      999999999988764

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.63  E-value=1.3e-16  Score=135.82  Aligned_cols=284  Identities=13%  Similarity=0.195  Sum_probs=211.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQG-MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (383)
                      ++.+.++.+.-+-.++-......+.....++ ..|...+|+.+..-+++.-++..+|.+     .-...|+..++++++-
T Consensus        14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~~~~~~~hYilla~~D   88 (336)
T KOG2766|consen   14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-----YIKAKWRHYILLAFVD   88 (336)
T ss_pred             hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----HHHHHHHHhhheeEEe
Confidence            3445555555444444444444445443443 458889999999999999998888541     1223455577777776


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcc
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWK  169 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~  169 (383)
                       +-++.+...|.||++...++.+-....+.+.+++|++++.|.+..+      +.|+++++.|+++++..+-        
T Consensus        89 -VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV--------  153 (336)
T KOG2766|consen   89 -VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDV--------  153 (336)
T ss_pred             -ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeee--------
Confidence             6678888899999999999999999999999999999999999997      9999999999999885431        


Q ss_pred             hhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042257          170 QVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGI  249 (383)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  249 (383)
                               ..++..+..+..+|+.+.++++-+||..++..+.+.|+.+ ....+....++|+++..+- ++.+..+...
T Consensus       154 ---------~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t  222 (336)
T KOG2766|consen  154 ---------HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST  222 (336)
T ss_pred             ---------ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee
Confidence                     1122345677789999999999999999999999999987 5889999999999998888 4454322222


Q ss_pred             ceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          250 WLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       250 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                        .++.......+...++.++-|-+.-..+|..+++-.+.-..+.-.++++.  ..||=+.++...+..+.+..|.+++.
T Consensus       223 --l~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  223 --LHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             --EeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence              22222222222222224444555556678888888888888999999998  57888899999999999999998883

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.62  E-value=4.6e-14  Score=118.99  Aligned_cols=263  Identities=11%  Similarity=0.083  Sum_probs=200.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHH
Q 042257           44 PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLM  123 (383)
Q Consensus        44 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll  123 (383)
                      ...++|.++++..++.=++..++++.+.-.  .+.+ .+.. ....+.++....+.|+++.|-....+-.+..|+-++++
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~--t~~~-~YaA-cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil  128 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRKKTEIDN--TPTK-MYAA-CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL  128 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecccccccC--Ccch-HHHH-HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence            567788888888877755555543222111  1222 2233 33344677778888999999999888999999999999


Q ss_pred             HHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHH
Q 042257          124 AWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAW  203 (383)
Q Consensus       124 ~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~  203 (383)
                      ++++.+.+.+++.      ...++++.+|+.+.....+.-                  ....+.+...|-++.+++-..-
T Consensus       129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv------------------~g~e~~t~g~GElLL~lSL~mD  184 (337)
T KOG1580|consen  129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKV------------------GGAEDKTFGFGELLLILSLAMD  184 (337)
T ss_pred             ehhhhcccccHHH------HHHHHHHHHHHHHhhcccccc------------------CCCcccccchHHHHHHHHHHhc
Confidence            9999999888886      999999999999988533211                  0123445568999999999999


Q ss_pred             HHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 042257          204 SCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKR  281 (383)
Q Consensus       204 a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~  281 (383)
                      ++....+.+..+.+. .....+++.++.+.+.+..-.++.+. .+...+....+..|+.+..+++.+.+++++.+.-+..
T Consensus       185 GlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~  264 (337)
T KOG1580|consen  185 GLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEE  264 (337)
T ss_pred             ccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999998888766543 23578888898888877766655432 1222233334567888888899999999999999999


Q ss_pred             cCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          282 RGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       282 ~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      .+|..-+++..++-.++++.++++++.+++.+||+|..+++.+...=....++
T Consensus       265 FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~  317 (337)
T KOG1580|consen  265 FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK  317 (337)
T ss_pred             hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence            99999999999999999999999999999999999999999998765544443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.62  E-value=4.9e-14  Score=123.62  Aligned_cols=265  Identities=13%  Similarity=0.145  Sum_probs=214.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHH
Q 042257           43 SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFL  122 (383)
Q Consensus        43 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~l  122 (383)
                      ++..+++.+-+.+.++-..+..+.+.+..++   +.|..+...++.+ .++..|.|.|++|++-..-.+-.+.--+-+++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~---apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGV---APLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCC---CchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            5888999999999888876666654443232   3345566677776 88899999999999998888889999999999


Q ss_pred             HHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHH
Q 042257          123 MAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFA  202 (383)
Q Consensus       123 l~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~  202 (383)
                      ++.++.|.|.+..+      .+...+.-+|+.+..+.+.+.                +..+....+...|+.+....-+.
T Consensus       126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~----------------s~~~~g~~ns~~G~~Ll~~~L~f  183 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSD----------------SSSKSGRENSPIGILLLFGYLLF  183 (327)
T ss_pred             HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCC----------------CccccCCCCchHhHHHHHHHHHH
Confidence            99999999999997      888888889998887653211                11134556778999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcC--CCccceeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042257          203 WSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERG--NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLM  279 (383)
Q Consensus       203 ~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~  279 (383)
                      -++.+..+.++.++.. ++...+++.++.+.+....... ..+.  +...+-..++..+..++....++.+++.+.++-+
T Consensus       184 DgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li-~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI  262 (327)
T KOG1581|consen  184 DGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI-LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTI  262 (327)
T ss_pred             HhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhH
Confidence            9999999999988765 4588899999999888777633 2221  1122333445678888888999999999999999


Q ss_pred             hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      ++.++...+.++.++-.+++.++.+.+|.+.+..||.|..+++.|+.+-.+-+++
T Consensus       263 ~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  263 ERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999887766655

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.62  E-value=4.3e-14  Score=125.70  Aligned_cols=228  Identities=12%  Similarity=0.122  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHH
Q 042257           75 TLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAM  154 (383)
Q Consensus        75 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~  154 (383)
                      ++++..++.+.+++- ++.+.+.|.++++++++..+++.++..+++++++++++|+|++.+|      |.++.+.++|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence            457778888888886 9999999999999999999999999999999999999999999999      999999999999


Q ss_pred             HHHhhcCCcccCCcchhhhhccccccc--CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hHHHHHHHHHH
Q 042257          155 CMTLLKGPILKFPWKQVRLLHNQLETG--IQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-LSLTALICFMS  231 (383)
Q Consensus       155 li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~  231 (383)
                      ++...+.+..+.       .   +.+.  .+....+...|++..++++++-++..++.++..|+.+.+ ..........+
T Consensus        86 lv~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~g  155 (244)
T PF04142_consen   86 LVQLSSSQSSDN-------S---SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFG  155 (244)
T ss_pred             eeecCCcccccc-------c---cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            987433221000       0   0000  011244567999999999999999999999999997643 34444455555


Q ss_pred             HHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccc
Q 042257          232 SVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKL  310 (383)
Q Consensus       232 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~  310 (383)
                      .+..++...+.+...........  .+-...+.-++ ..++-.+....+|+.+...=+.......+++.++++++++.++
T Consensus       156 i~~~~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~  233 (244)
T PF04142_consen  156 ILFNLLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPP  233 (244)
T ss_pred             HHHHHHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            55555554433321111111111  12222233334 7777778888999999999999999999999999999999999


Q ss_pred             cchhhhhHHHH
Q 042257          311 YLGRIIGAVII  321 (383)
Q Consensus       311 ~~~~~~G~~li  321 (383)
                      +....+|+.++
T Consensus       234 s~~f~lg~~~V  244 (244)
T PF04142_consen  234 SLSFLLGAALV  244 (244)
T ss_pred             chHHhhheecC
Confidence            99999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=1.4e-14  Score=110.63  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA  271 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  271 (383)
                      ..++++++++++++.-++.|--.++.+ |...+..+.++..+.+..+.+...  +.+.-...+++.|..++..|+.++.+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g--~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTG--NWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcC--ceecccccCcceehhhhHHHHHHHHH
Confidence            568999999999999999999888876 578889999998888888777554  22222223667899999989779999


Q ss_pred             HHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          272 YFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       272 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      ..+|++|++..+++++.++..++|+++++++++++||+++..+++|+++|.+|..+..
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999999988764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.60  E-value=2.4e-13  Score=119.22  Aligned_cols=257  Identities=17%  Similarity=0.165  Sum_probs=190.3

Q ss_pred             CCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhHHHhhh
Q 042257           40 QGMS-PYVLVAYRMVVATILIAPFAFVLERKT---RPKMTLPIFA-KIALVSLFEPVISQNLYYTGMKYTTATFTVAMCN  114 (383)
Q Consensus        40 ~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~  114 (383)
                      ++++ |...+.++.++-.++....-...++..   +...+|++.. ++...++.+ +....+.+++++|++.+..++..+
T Consensus        40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KS  118 (349)
T KOG1443|consen   40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKS  118 (349)
T ss_pred             cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccc
Confidence            3444 788888888777666654444433322   2245665544 445566665 888899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHH
Q 042257          115 ILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGAL  194 (383)
Q Consensus       115 ~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  194 (383)
                      ..++|+.+++.++.-||+++.-      ..-+++...|++++++.                         ..+.+..|..
T Consensus       119 Ssi~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~K-------------------------sTqf~i~Gf~  167 (349)
T KOG1443|consen  119 SSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTYK-------------------------STQFNIEGFF  167 (349)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEec-------------------------ccceeehhHH
Confidence            9999999999999999999885      66666666677766631                         2335678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHhhhcCCCc----cceeccch-hHHHHHHHH
Q 042257          195 LIAAGCFAWSCFIILQAFLLKSYP----AELSLTALICFMSSVEGTILTLAIERGNTG----IWLLHFDA-KLLAVIYGG  265 (383)
Q Consensus       195 ~~l~a~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g  265 (383)
                      +..+++++-++.-.+.+..+++.+    +|...++.......+.++|..+..|+....    .|...++. .+..+..++
T Consensus       168 lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~  247 (349)
T KOG1443|consen  168 LVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS  247 (349)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH
Confidence            999999999999888888888765    467777777777888888888888762222    12222221 222222222


Q ss_pred             HH---HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          266 FV---SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       266 ~~---~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      +.   .++--++-+....+++..+.++.+...-+.+.+++.++.++.++...|+|..+...|+..+
T Consensus       248 l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  248 LGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            22   4444444566688899999999999999999999999999999999999999999999988

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.52  E-value=6.8e-14  Score=111.94  Aligned_cols=125  Identities=22%  Similarity=0.470  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 042257           25 FCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYT  104 (383)
Q Consensus        25 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~  104 (383)
                      ++||...++.|... ++.||...+++|+..+.+ ++++....+++.....+.+++......++++...++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            47999999999985 779999999999999998 6666666555444566778888888889887799999999999999


Q ss_pred             chhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257          105 TATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT  157 (383)
Q Consensus       105 ~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~  157 (383)
                      +++.++++.++.|+++.+++++++||+++.++      ++|+++++.|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998      999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.5e-14  Score=124.55  Aligned_cols=279  Identities=12%  Similarity=0.089  Sum_probs=206.0

Q ss_pred             HHHHHHHhC----CCChHHHHHHHHHHHHHHHHHHHHhhhcCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042257           32 VIAKLALNQ----GMSPYVLVAYRMVVATILIAPFAFVLERKT----RP--KMTLPIFAKIALVSLFEPVISQNLYYTGM  101 (383)
Q Consensus        32 ~~~k~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al  101 (383)
                      +..|+.++.    --.|...++.+++....+...+.....+-+    .+  +++.+..+...-+.++. .++..+-.+++
T Consensus        45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL  123 (347)
T KOG1442|consen   45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL  123 (347)
T ss_pred             hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence            345665522    124899999999999888877665433211    11  24444455555555554 55566667899


Q ss_pred             cccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhccccccc
Q 042257          102 KYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETG  181 (383)
Q Consensus       102 ~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~  181 (383)
                      +|.+++...+-.++..+|+++++++++|+|-+..-      ..+..+.++|..+=...+|                    
T Consensus       124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGvdqE~--------------------  177 (347)
T KOG1442|consen  124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGVDQEG--------------------  177 (347)
T ss_pred             hhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecccccc--------------------
Confidence            99999999999999999999999999999999886      6777777666655432111                    


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHhhhc-CCCccceec-cchhH
Q 042257          182 IQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-LSLTALICFMSSVEGTILTLAIER-GNTGIWLLH-FDAKL  258 (383)
Q Consensus       182 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~-~~~~~  258 (383)
                        ..+.....|.++++.|+++-|+..++.|+.....++. +..+++.++.+.++++|...+.+. +....+... ....|
T Consensus       178 --~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw  255 (347)
T KOG1442|consen  178 --STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFW  255 (347)
T ss_pred             --ccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHH
Confidence              2344556899999999999999999999877766643 678889999999999988876542 011122222 23455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCC
Q 042257          259 LAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSP  338 (383)
Q Consensus       259 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~  338 (383)
                      ..+...|++++.-.+.-.+-+|-++|.+.++-...+-....+++..+++|.-+...|-|-.+++.|..++.+.|.++.++
T Consensus       256 ~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  256 ILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             HHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            66666566655555566677999999999999999999999999999999999999999999999999999988765544


Q ss_pred             C
Q 042257          339 S  339 (383)
Q Consensus       339 ~  339 (383)
                      +
T Consensus       336 ~  336 (347)
T KOG1442|consen  336 A  336 (347)
T ss_pred             h
Confidence            3

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.47  E-value=7.7e-13  Score=110.80  Aligned_cols=282  Identities=15%  Similarity=0.163  Sum_probs=207.2

Q ss_pred             HHHHHHHHHh-CCCC-hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 042257           30 MSVIAKLALN-QGMS-PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTAT  107 (383)
Q Consensus        30 ~~~~~k~~~~-~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~  107 (383)
                      +.+-.|+.++ .+++ .+.+.+.+.+.+.+-+..+-+.+--+.| ..+.+.|   +..+++. ......--.+++|.+..
T Consensus        21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLL-v~MIyt~SKsLqyL~vp   95 (309)
T COG5070          21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLL-VVMIYTSSKSLQYLAVP   95 (309)
T ss_pred             HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHH-HHHHHhcccceeeeeee
Confidence            4555666642 2222 4566777877777766655444322222 2222333   3344443 44455556899999999


Q ss_pred             hHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCcc
Q 042257          108 FTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEE  187 (383)
Q Consensus       108 ~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (383)
                      ..+++.+++.+.++.....++|.|++..+      ..+.++.++.-+...+.+.+..                  .....
T Consensus        96 iYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~------------------~~~~~  151 (309)
T COG5070          96 IYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQAS------------------AFKAQ  151 (309)
T ss_pred             HHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHH------------------HHHhc
Confidence            99999999999999999999999999998      9998888888887775442110                  11234


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee-ccchhHHHHHHHH
Q 042257          188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERGNTGIWLL-HFDAKLLAVIYGG  265 (383)
Q Consensus       188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g  265 (383)
                      ..+.|++++...++.-+.+....|+..+-.. .....++|.++.+..+++.+.++.|+.+...... .+.....+++..|
T Consensus       152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg  231 (309)
T COG5070         152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG  231 (309)
T ss_pred             ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence            5568999999999999999999887665433 2378899999999999999999888533332211 1222355677778


Q ss_pred             HHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCCCC
Q 042257          266 FVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPSK  340 (383)
Q Consensus       266 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~~~  340 (383)
                      ++++.-.+|-.|..+-++.+..++.+.++-.-..+.|.++++|+.+...+..+.+-.++..++...++++++.++
T Consensus       232 l~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~  306 (309)
T COG5070         232 LCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK  306 (309)
T ss_pred             HHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            886666779999999999999999999999999999999999999999999999988888888877765444443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.45  E-value=5.8e-12  Score=109.16  Aligned_cols=280  Identities=18%  Similarity=0.178  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHH---hCCC----ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-----------C--CHHHHHHHHHHH
Q 042257           27 YSIMSVIAKLAL---NQGM----SPYVLVAYRMVVATILIAPFAFVLERKTRPK-----------M--TLPIFAKIALVS   86 (383)
Q Consensus        27 ~~~~~~~~k~~~---~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~g   86 (383)
                      =+.+.+++|.+-   .++.    +|+..+..-++.-+++++.+...+.|...+.           .  +.+. ...+...
T Consensus        15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pa   93 (372)
T KOG3912|consen   15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPA   93 (372)
T ss_pred             ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChH
Confidence            355777888762   1222    4777777778877788887777765432111           0  1111 1233355


Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccC
Q 042257           87 LFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKF  166 (383)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~  166 (383)
                      ++- ..+..+.|.++.+++++..+++.....+|+.+++.-+++++++.++      |+|+....+|++++-..+-..   
T Consensus        94 l~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~---  163 (372)
T KOG3912|consen   94 LCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHL---  163 (372)
T ss_pred             HHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeeccc---
Confidence            555 7778889999999999999999999999999999999999999998      999999999999886432110   


Q ss_pred             CcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhcC
Q 042257          167 PWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIERG  245 (383)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~  245 (383)
                                  ...+..+-.+...|+++.+++-+.-|+.+++-+|..++.+ +|.....|..++|.+++..++.....-
T Consensus       164 ------------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi  231 (372)
T KOG3912|consen  164 ------------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYI  231 (372)
T ss_pred             ------------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhe
Confidence                        0111133455678999999999999999999999888866 578999999999977665555433210


Q ss_pred             CCc-ccee---------------ccchhHHHHHHHHHHHHHHH--HHHHHHHhccCccceeecchhHHHHHHHHHHHHhc
Q 042257          246 NTG-IWLL---------------HFDAKLLAVIYGGFVSCTAY--FIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLA  307 (383)
Q Consensus       246 ~~~-~~~~---------------~~~~~~~~~~~~g~~~~~~~--~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~  307 (383)
                      +.. .++.               ........+...|...-+++  +.=.+-.|..++++-..+..++..+--+++.....
T Consensus       232 ~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~  311 (372)
T KOG3912|consen  232 PSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW  311 (372)
T ss_pred             ecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH
Confidence            000 1100               00111222333333311111  12223356678888899999999999999999999


Q ss_pred             ccccchhhhhHHHHHHHHHHhh
Q 042257          308 EKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       308 e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      |.++..|+.|.++.+.|+.++.
T Consensus       312 E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  312 EYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.39  E-value=1.7e-12  Score=103.81  Aligned_cols=124  Identities=27%  Similarity=0.453  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHH
Q 042257          201 FAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLM  279 (383)
Q Consensus       201 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~  279 (383)
                      ++||.+.+..|+..++.+ +....+++...+.+ ..+...+.+. ..  ....+...+...++.+++ +.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            468899999999999876 68999999999988 6666655543 21  233345577888888888 899999999999


Q ss_pred             hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      ++.+++.++++.+++|+++.++++++++|+++..+++|+++++.|+++..
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.36  E-value=3.4e-10  Score=100.40  Aligned_cols=252  Identities=16%  Similarity=0.162  Sum_probs=176.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHH
Q 042257           42 MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMT--LPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPA  118 (383)
Q Consensus        42 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi  118 (383)
                      -+|....+.-.+.+.++-+....+. +   +..+  .+.+...++.|++- .+++...+.|+++.+.+.+.++. .+.-+
T Consensus        10 G~~~~Q~lG~t~Gali~alv~~~~~-~---p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv   84 (269)
T PF06800_consen   10 GKPANQILGTTIGALIFALVVFLFR-Q---PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV   84 (269)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHh-C---CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence            4466666665566666655555442 2   2333  36677777777776 99999999999999999999997 77888


Q ss_pred             HHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHH
Q 042257          119 LTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAA  198 (383)
Q Consensus       119 ~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~  198 (383)
                      .+.+++.++++|--+..++  ..=.+++++.++|+.+-...+++.                 ...+...+...|+...++
T Consensus        85 g~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~~~~-----------------~~~~~~~~~~kgi~~Ll~  145 (269)
T PF06800_consen   85 GTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQDKKS-----------------DKSSSKSNMKKGILALLI  145 (269)
T ss_pred             HHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhccccccc-----------------cccccccchhhHHHHHHH
Confidence            8999999999998887760  001236777888888776543321                 001124556789999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHH
Q 042257          199 GCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWL  278 (383)
Q Consensus       199 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a  278 (383)
                      +.+.|..|.+..|..  +.+ +.....-+.+.-.+....+..+...    ..  .....|.. +..|++-.++++++..+
T Consensus       146 stigy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~~~----~~--~~k~~~~n-il~G~~w~ignl~~~is  215 (269)
T PF06800_consen  146 STIGYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFSKK----PF--FEKKSWKN-ILTGLIWGIGNLFYLIS  215 (269)
T ss_pred             HHHHHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcccc----cc--cccchHHh-hHHHHHHHHHHHHHHHh
Confidence            999999999987663  333 4555555544444433333332211    11  11123333 44577788889999999


Q ss_pred             HhccCccceeecchhHHHHHHHHHHHHhcccccch----hhhhHHHHHHHHHH
Q 042257          279 MKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLG----RIIGAVIIVIGLYM  327 (383)
Q Consensus       279 ~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~----~~~G~~li~~gv~l  327 (383)
                      .++.+.+..=.+..+.++++.+.+.++++|+=+..    .++|+++++.|..+
T Consensus       216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999997755    45688888877654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.2e-11  Score=105.47  Aligned_cols=276  Identities=11%  Similarity=0.060  Sum_probs=189.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhHHHhhhhhHHHH
Q 042257           42 MSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKY-TTATFTVAMCNILPALT  120 (383)
Q Consensus        42 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~a~~l~~~~pi~~  120 (383)
                      -+-..++|.++++-+.--+++.--.. ..+++.+.+++...+..    ....+.+.++++++ ++...-.++.+-.++.+
T Consensus        31 gsgNLITFaqFlFia~eGlif~skf~-~~k~kiplk~Y~i~V~m----FF~vnv~NN~al~f~I~~PlHiIfRsgsll~n  105 (330)
T KOG1583|consen   31 GSGNLITFAQFLFIATEGLIFTSKFF-TVKPKIPLKDYAITVAM----FFIVNVTNNYALKFNIPMPLHIIFRSGSLLAN  105 (330)
T ss_pred             CCeeehHHHHHHHHHHhceeeecccc-ccCCCCchhhhheehhe----eeeeeeeccceeeecccceEEEEEecCcHHHH
Confidence            34467788888776665554331111 11355666665443322    25567788889987 67777788889999999


Q ss_pred             HHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHH
Q 042257          121 FLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGC  200 (383)
Q Consensus       121 ~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~  200 (383)
                      ++++++++|+|.+.+|      ..++++..+|+++-++.+.+....  +.+..    ++++.......+..|+.+..++-
T Consensus       106 M~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l----~~~~~~~~~~~w~iGi~lL~~al  173 (330)
T KOG1583|consen  106 MILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS--KLSGL----DSGSAQSDFFWWLIGIALLVFAL  173 (330)
T ss_pred             HHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh--hhccc----ccCcccccchHHHHHHHHHHHHH
Confidence            9999999999999998      999999999999987654322111  00111    12222345556678999999999


Q ss_pred             HHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHHhhhc-----CCCc-----cceeccchhHHHHHHHHHHHH
Q 042257          201 FAWSCFIILQAFLLKSYP-AELSLTALICFMSSVEGTILTLAIER-----GNTG-----IWLLHFDAKLLAVIYGGFVSC  269 (383)
Q Consensus       201 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~g~~~~  269 (383)
                      +.-|.-.++++...++++ ++.+.++|.-..+....+...-=..+     ...+     .....-+..|..++...+.+.
T Consensus       174 ~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy  253 (330)
T KOG1583|consen  174 LLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQY  253 (330)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHH
Confidence            999999999998888876 46788888888776665543310000     0011     111112335666655433344


Q ss_pred             HHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      .+---.+..-.+.++.++++...++-.+++++|.+.|+.+++++-|+|.+++++|.+++.-...+
T Consensus       254 ~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~  318 (330)
T KOG1583|consen  254 FCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH  318 (330)
T ss_pred             HHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444445556677889999999999999999999999999999999999999999888754443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.30  E-value=7.8e-11  Score=106.79  Aligned_cols=134  Identities=14%  Similarity=0.285  Sum_probs=114.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSP--YVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLF   88 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   88 (383)
                      +....|.+++++++++|+...+..|... ++.++  .....+++.++.++++++....++.  ...+.+++...+..+++
T Consensus       124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~  200 (260)
T TIGR00950       124 SINPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLI  200 (260)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHH
Confidence            3456799999999999999999999984 55664  4555578999999988887764332  23356777778888988


Q ss_pred             HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHH
Q 042257           89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGA  153 (383)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv  153 (383)
                      +...++.++++++++.+++.++++.++.|++++++++++++|+++..+      ++|+.+.+.|+
T Consensus       201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~  259 (260)
T TIGR00950       201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhc
Confidence            878999999999999999999999999999999999999999999998      99999999886

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.25  E-value=6e-10  Score=102.14  Aligned_cols=280  Identities=12%  Similarity=0.134  Sum_probs=158.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP   90 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (383)
                      .+...|++++++++++-+....+.|....+ .+....   |              .+++.++..+    ...+..|.+..
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~~~~---~--------------~~~~~~~~l~----~~~W~~G~~~~   60 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPRGSL---R--------------AGSGGRSYLR----RPLWWIGLLLM   60 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc---c--------------ccchhhHHHh----hHHHHHHHHHH
Confidence            345679999999999999999999988421 111000   0              0000001111    12344566666


Q ss_pred             HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcch
Q 042257           91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQ  170 (383)
Q Consensus        91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~  170 (383)
                      .++..+.+.|+.+.|.+..+++..+.-++.++++.+++|||++.++      +.|+.+++.|..++.... |..+-..+.
T Consensus        61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~-~~~~~~~t~  133 (300)
T PF05653_consen   61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFA-PKEEPIHTL  133 (300)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeC-CCCCCcCCH
Confidence            7788899999999999999999999999999999999999999999      999999999998876443 221111111


Q ss_pred             hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH---HHHh-hhc-C
Q 042257          171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTI---LTLA-IER-G  245 (383)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~-~  245 (383)
                      ++..+        .-.+.....+...... ++..+.....+|..++  +.........+.+......   +... ... .
T Consensus       134 ~~l~~--------~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~  202 (300)
T PF05653_consen  134 DELIA--------LLSQPGFLVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFS  202 (300)
T ss_pred             HHHHH--------HhcCcceehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhc
Confidence            11100        0011111111111111 1222222222222111  1110111111111111110   1100 110 0


Q ss_pred             CCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchh-HHHHHHHHHHHHhcccc--cc----hhhhhH
Q 042257          246 NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPL-GMVIIAVLGSFFLAEKL--YL----GRIIGA  318 (383)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~-~pv~~~l~~~~~~~e~~--~~----~~~~G~  318 (383)
                      +...+  ..+..|..++.+...........++++++.+++.+.++.+. -...+++-|.++++|..  +.    ...+|+
T Consensus       203 g~~~f--~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~  280 (300)
T PF05653_consen  203 GDNQF--TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGF  280 (300)
T ss_pred             Cchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence            11122  22234444444333366677778999999999999888874 55666777888888863  44    356788


Q ss_pred             HHHHHHHHHhhhcc
Q 042257          319 VIIVIGLYMVLWGR  332 (383)
Q Consensus       319 ~li~~gv~l~~~~~  332 (383)
                      .+++.|+++....+
T Consensus       281 ~~ii~GV~lL~~~~  294 (300)
T PF05653_consen  281 LIIIIGVFLLSSSK  294 (300)
T ss_pred             HHHHHhhheeeccC
Confidence            88899988875433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=99.24  E-value=1.5e-08  Score=93.66  Aligned_cols=299  Identities=12%  Similarity=0.016  Sum_probs=182.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-----hhhcC---CCCCCCHHHHHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAF-----VLERK---TRPKMTLPIFAKIA   83 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~   83 (383)
                      +...|++..+++.++||...+-.|..  ++.+--.+ ..  +... +.+.+.-     +..+.   .....+.+.+...+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~-W~--v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM-WS--VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc--CCCchhHH-HH--HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            46679999999999999999999995  55552222 11  1111 1111111     11111   11224566777777


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhccc---ccccccccchhhHHHHHHHHHHHHHhh
Q 042257           84 LVSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKV---KIKSTHSQAKILGTIVTAGGAMCMTLL  159 (383)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~---~~~~~~~~~~~~gi~l~~~Gv~li~~~  159 (383)
                      +.|++- ..++..++.++++.+.+.+.++. .+.-++..++..++++|=.   +..+  .+.-.+|+++.++|+++....
T Consensus        78 l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh
Confidence            777776 99999999999999999998886 8889999999999998754   2211  122478889999999988752


Q ss_pred             cCCcccCCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHH-------HHHHHHhhcCCchhHHHHHHH----
Q 042257          160 KGPILKFPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFI-------ILQAFLLKSYPAELSLTALIC----  228 (383)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~----  228 (383)
                      ......           . ++.++....+..+|+.+++++.+.+++|.       ...+.......++.....-+.    
T Consensus       155 g~~k~~-----------~-~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~  222 (345)
T PRK13499        155 GQLKER-----------K-MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIM  222 (345)
T ss_pred             hhhccc-----------c-cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHH
Confidence            211000           0 00000234567899999999999999999       433332111112222222222    


Q ss_pred             HHHHHHHHHHHHhhh-c-CCCccceec--c----chhHHHHHHHHHHHHHHHHHHHHHHhccCccceee----cchhHHH
Q 042257          229 FMSSVEGTILTLAIE-R-GNTGIWLLH--F----DAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSS----FNPLGMV  296 (383)
Q Consensus       229 ~~~~i~~~~~~~~~~-~-~~~~~~~~~--~----~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~----~~~~~pv  296 (383)
                      +.+.+.......+.. + .+...+...  +    ......-+..|+.=.++++++..+-.+.+......    .+.+..+
T Consensus       223 ~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vi  302 (345)
T PRK13499        223 GGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVL  302 (345)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHH
Confidence            222323332223211 1 011111111  1    11222224456667777888888888776543333    3378889


Q ss_pred             HHHHHHHHHhccccc------chhhhhHHHHHHHHHHhhhcc
Q 042257          297 IIAVLGSFFLAEKLY------LGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       297 ~~~l~~~~~~~e~~~------~~~~~G~~li~~gv~l~~~~~  332 (383)
                      ++.+.+. +++|.=+      ..-++|++++++|..+...++
T Consensus       303 istlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~  343 (345)
T PRK13499        303 CGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN  343 (345)
T ss_pred             HHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence            9999999 5999866      557999999999998887654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.24  E-value=1.2e-10  Score=96.76  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC-----C-chhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee-------c-cchh
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSY-----P-AELSLTALICFMSSVEGTILTLAIERGNTGIWLL-------H-FDAK  257 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~-~~~~  257 (383)
                      |.++++.|.++.+++.++.|+..++.     . ++.....+....+.+.+.+..++.|.........       . +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999988883     2 5789999999999999999998887522111110       0 2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          258 LLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       258 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      +..++..|++..+.+...+..+++++|...+++..++.+...++++++++|+++..++.|+++.+.|+++++|
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            5666666666888899999999999999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.22  E-value=4.5e-11  Score=93.80  Aligned_cols=105  Identities=15%  Similarity=0.331  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHH
Q 042257           49 AYRMVVATILIAPFAFVLERKT--RPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWI  126 (383)
Q Consensus        49 ~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~  126 (383)
                      .+|+..+.+++..+...+++..  .+..+++.+.++...|.++...++.++++|+++.| +.++++.++.|+++++++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5789999999988887754421  12233455566777788886689999999999999 58889999999999999999


Q ss_pred             HhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257          127 FRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus       127 ~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      ++|||+++++      +.+++++++|++++...+
T Consensus        81 ~~~er~~~~~------~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   81 FFKERLSPRR------WLAILLILIGVILIAWSD  108 (113)
T ss_pred             HhcCCCCHHH------HHHHHHHHHHHHHHhhhh
Confidence            9999999998      999999999999998643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.22  E-value=4.1e-11  Score=98.66  Aligned_cols=211  Identities=16%  Similarity=0.153  Sum_probs=160.5

Q ss_pred             HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcch
Q 042257           91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQ  170 (383)
Q Consensus        91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~  170 (383)
                      .+.++.|..|++.++++.++.+......|+.+++++++|+|+....      +++.++++.|++++...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEecc----------
Confidence            6788999999999999999999999999999999999999999987      999999999999887433          


Q ss_pred             hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHHHHHHHHhhhcC
Q 042257          171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAE-----LSLTALICFMSSVEGTILTLAIERG  245 (383)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~  245 (383)
                                   ........|+.+++.++...|+|-++.|+...+.+-.     ++...+.++.   +.....++..-.
T Consensus       128 -------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~---~~~~~~lIL~~T  191 (290)
T KOG4314|consen  128 -------------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC---FISFPALILAFT  191 (290)
T ss_pred             -------------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH---HHhhhHHHHHHh
Confidence                         2334557899999999999999999999988775411     2222222221   111111111111


Q ss_pred             CCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 042257          246 NTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGL  325 (383)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv  325 (383)
                      ..+.|.......|..+...+.++..-+++.+.++..+.|...++-+..........+.++-+-..+...+.|..+|++|.
T Consensus       192 ~VE~~qsFA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~F  271 (290)
T KOG4314|consen  192 GVEHLQSFAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGF  271 (290)
T ss_pred             chHHHHHHhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33444433334577777666666666778888999999999999999999999999986555568899999999999999


Q ss_pred             HHhhhccC
Q 042257          326 YMVLWGRN  333 (383)
Q Consensus       326 ~l~~~~~~  333 (383)
                      .+......
T Consensus       272 iLiiiP~d  279 (290)
T KOG4314|consen  272 ILIIIPED  279 (290)
T ss_pred             Hheecccc
Confidence            88776443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.19  E-value=8.8e-10  Score=101.62  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=116.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPV   91 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (383)
                      ....|.++.++++++|+...+..|.. .. .++....++++.++.+.+.++............+.+.|......++++..
T Consensus       147 ~~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~  224 (292)
T PRK11272        147 GNPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSI  224 (292)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHH
Confidence            34579999999999999999999987 23 34566778888888888877765433221122356778888888998888


Q ss_pred             HHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           92 ISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        92 ~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      +++.++++++++.+++.++++..+.|++++++++++++|+++..+      ++|.++.+.|+++...
T Consensus       225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998      9999999999999864

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.19  E-value=8.1e-10  Score=95.55  Aligned_cols=271  Identities=11%  Similarity=0.126  Sum_probs=200.1

Q ss_pred             HHHHHHHHHH-hCCCC--hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 042257           29 IMSVIAKLAL-NQGMS--PYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTGMKYTT  105 (383)
Q Consensus        29 ~~~~~~k~~~-~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~  105 (383)
                      ....+-.+.+ .+++.  .+.+++.+++.-..+.+.-.... +.+++..++|   -...++.+. .+...+..-++.|++
T Consensus        57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~r---tY~~la~~t-~gtmGLsn~SlgYLN  131 (367)
T KOG1582|consen   57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWR---TYVILAFLT-VGTMGLSNGSLGYLN  131 (367)
T ss_pred             HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchh---HhhhhHhhh-hhccccCcCcccccc
Confidence            3444444444 24555  35667777766544444322221 2222334444   345556665 677778888999998


Q ss_pred             hhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCcchhhhhcccccccCCCC
Q 042257          106 ATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPWKQVRLLHNQLETGIQNN  185 (383)
Q Consensus       106 ~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (383)
                      -..-.++.++.-+-+++.+.++-+.|.++.+      .++..+..+|.++.++.+..                     ..
T Consensus       132 YPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~---------------------~s  184 (367)
T KOG1582|consen  132 YPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQ---------------------TS  184 (367)
T ss_pred             CcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccc---------------------cC
Confidence            8777788899989999999999999999998      99999999999999876532                     34


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCcccee---ccchhHHHH
Q 042257          186 EEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLL---HFDAKLLAV  261 (383)
Q Consensus       186 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  261 (383)
                      ...+..|+.+.-.|-++-|+-.-++++..+..+. .....++...+|.+.++......+. -...|..   ++.......
T Consensus       185 PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge-~f~a~~fcaehp~~tyGy~  263 (367)
T KOG1582|consen  185 PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE-LFSAWTFCAEHPVRTYGYA  263 (367)
T ss_pred             CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc-chhhhHHHHhCcHhHHHHH
Confidence            4556789999999999998887788888887663 3566777788888877777765543 3333332   222345566


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          262 IYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       262 ~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      ++.++.+.++.......++..++..++.++..+-.+++++|+++|..+++....-|..+|+.|+++-.+.+
T Consensus       264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            66666678888888888999999999999999999999999999999999999999999999999887766

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.16  E-value=1.4e-09  Score=100.38  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=113.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI   92 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (383)
                      ...|.++.++++++|+...+..|.. .++.++.... +...++.+++.++......  ....+...+...+..|+++..+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRA-GAEHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999988 4667777764 4456666666666655322  1223455566667889998899


Q ss_pred             HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      ++.++++++++.+++.++++..+.|+++.++++++++|+++..+      ++|..+.++|++......
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999      999999999999987543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.10  E-value=4.2e-09  Score=99.18  Aligned_cols=138  Identities=9%  Similarity=0.127  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHHHHHHHHHHHH
Q 042257           14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSP-YVLVAYRMVVATILIAPFAFVLERKTR----PKMTLPIFAKIALVSLF   88 (383)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~   88 (383)
                      ..|.+++++++++|+...++.|... +..++ ...+++.+.++.+.+.+......+...    ...+... ...+..++.
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~  265 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAII  265 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHH
Confidence            4588999999999999999999874 45544 466677777776666555544332211    1122222 224445555


Q ss_pred             HHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           89 EPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      . .+++.++++++++.+++.++++.++.|++++++++++++|+++..+      ++|.++.+.|+.++...+
T Consensus       266 t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        266 T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWGK  330 (358)
T ss_pred             H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhhh
Confidence            4 6789999999999999999999999999999999999999999999      999999999999988644

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.09  E-value=2.4e-09  Score=98.16  Aligned_cols=134  Identities=13%  Similarity=0.098  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHH
Q 042257          193 ALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAY  272 (383)
Q Consensus       193 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  272 (383)
                      ..+.+++++++|...++.|+..++.+ +  ...+....+.+...+......  ....+...+...+..++..++.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYL--AQVGWSRLPATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhc--ccCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            46889999999999999998777643 2  345555666666666654321  122333323334444444444488889


Q ss_pred             HHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257          273 FIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       273 ~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      .++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++++.|+.+....
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999887643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.07  E-value=2.4e-09  Score=98.92  Aligned_cols=138  Identities=16%  Similarity=0.217  Sum_probs=109.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccce--eccchhHHHHHHHH
Q 042257          188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL--LHFDAKLLAVIYGG  265 (383)
Q Consensus       188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g  265 (383)
                      +..+|++++++++++|+...+..|.. .+.+ |....+++...+.+...+......  +.....  ..+...+... ..+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~   79 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR--QWSYLKTLIQTPQKIFML-AVS   79 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHcCHHHHHHH-HHH
Confidence            45689999999999999999999764 4555 789999999999887776654322  111110  0112233333 345


Q ss_pred             HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      .+ .+..+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            55 888899999999999999999999999999999999999999999999999999999987753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.06  E-value=5.6e-09  Score=96.43  Aligned_cols=134  Identities=13%  Similarity=0.162  Sum_probs=105.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI   92 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (383)
                      ...|.+++++++++|+...++.|.. .++.++....+   ....+.+.+...... ......+.+.|...+..++. ..+
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~-~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-t~~  227 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKY-ARGKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAA-MGF  227 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHH-HHH
Confidence            3468999999999999999999998 46677765433   223333333333322 21223456677777776754 488


Q ss_pred             HHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           93 SQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        93 ~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      ++.++++++++.+++.++++.++.|++.+++++++++|+++..+      ++|.++.+.|+++...
T Consensus       228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999999999999999999      9999999999988764

>TIGR00688 rarD rarD protein

Probab=98.99  E-value=7e-09  Score=93.82  Aligned_cols=137  Identities=15%  Similarity=0.207  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC---ccceeccch-hHHHHHHHHH
Q 042257          191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNT---GIWLLHFDA-KLLAVIYGGF  266 (383)
Q Consensus       191 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~g~  266 (383)
                      +|..+.++++++|+...+..|. ..+.+ |....+++.+.+.+...+......+ ..   ..+...... .+..+...|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQ-WAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHhCcccchHHHHHHHHHH
Confidence            4889999999999999999997 44554 7999999999998877665543321 11   111111112 2444555666


Q ss_pred             HHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          267 VSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      +.+..+.++++++++++++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.95  E-value=4.1e-08  Score=90.87  Aligned_cols=138  Identities=9%  Similarity=0.177  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCCCHHHHHHHHHH
Q 042257           14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMS---PYVLVAYRMVVATILIAPFAFVLERKT-----RPKMTLPIFAKIALV   85 (383)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   85 (383)
                      ..|.+++++++++|+...++.|... +..+   .....++.++.+.+.+.......+...     ....+...|...+..
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            4699999999999999999999873 3333   233344444444443333322222211     123456788888999


Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      +++...+++.++++++++.+++.++.+..+.|++..++++++++|+++..+      ++|.++.++|+.+...
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHhc
Confidence            999989999999999999999999999999999999999999999999999      9999999999998764

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.3e-10  Score=96.74  Aligned_cols=276  Identities=18%  Similarity=0.208  Sum_probs=190.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQ   94 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (383)
                      ..++.+++-++.||..+.+....   +-+|.+.+..-.+.+.++.+.++++ .+   |..+...+...++.|.+- ..++
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~~---p~~T~~~~iv~~isG~~W-s~GQ   73 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-VS---PELTLTIFIVGFISGAFW-SFGQ   73 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-ec---CccchhhHHHHHHhhhHh-hhhh
Confidence            46788999999999988876655   5667777777666666666555544 22   345566666667767665 8899


Q ss_pred             HHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhh---HHHHHHHHHHHHHhhcCCcccCCcch
Q 042257           95 NLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKIL---GTIVTAGGAMCMTLLKGPILKFPWKQ  170 (383)
Q Consensus        95 ~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~---gi~l~~~Gv~li~~~~~~~~~~~~~~  170 (383)
                      ...+.|+++.+++.+.++. .+.-+-+.+++++.++|-.+..+     .++   ++++.+.|+.+-.+.++         
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~---------  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDR---------  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecc---------
Confidence            9999999999999999997 77778889999999999888776     233   34445555555443222         


Q ss_pred             hhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 042257          171 VRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIW  250 (383)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  250 (383)
                              ++.+++...+..+|+...+.+.+.|-.|.++.+...  .+ ......-+.....+..+.+...    ..   
T Consensus       140 --------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiLPqAiGMv~~ali~~~~----~~---  201 (288)
T COG4975         140 --------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAILPQAIGMVIGALILGFF----KM---  201 (288)
T ss_pred             --------ccccccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhhHHHHHHHHHHHHHhhc----cc---
Confidence                    111234455667899999999999999999876553  33 2333333332222222223221    11   


Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchh----hhhHHHHHHHHH
Q 042257          251 LLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGR----IIGAVIIVIGLY  326 (383)
Q Consensus       251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~gv~  326 (383)
                      .....+..+.-+..|+.-..++..+..+.++.+.++.=.+..+..+++.+-+.++++|+-+..+    ++|..+++.|..
T Consensus       202 ~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai  281 (288)
T COG4975         202 EKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAI  281 (288)
T ss_pred             ccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhh
Confidence            1112223333444577777888899999999998888888899999999999999999988765    567778877776


Q ss_pred             Hhhh
Q 042257          327 MVLW  330 (383)
Q Consensus       327 l~~~  330 (383)
                      +...
T Consensus       282 ~lg~  285 (288)
T COG4975         282 LLGI  285 (288)
T ss_pred             hhhe
Confidence            6543

>TIGR00803 nst UDP-galactose transporter

Probab=98.90  E-value=5.6e-09  Score=92.32  Aligned_cols=213  Identities=11%  Similarity=0.062  Sum_probs=130.6

Q ss_pred             chhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc-chhhhhcccccccC-
Q 042257          105 TATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW-KQVRLLHNQLETGI-  182 (383)
Q Consensus       105 ~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~-~~~~~~~~~~~~~~-  182 (383)
                      +......+.+..++++++..+...++|.+..+      +++.++...|++.....+.+...... .......+.++..+ 
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~   76 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK   76 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc
Confidence            34445667788999999999999999988665      99999999998875543211000000 00000000000000 


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH----HHhhhcCC-Cccceeccchh
Q 042257          183 QNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTIL----TLAIERGN-TGIWLLHFDAK  257 (383)
Q Consensus       183 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~~~~~~~~~~~  257 (383)
                      .....+...|....+.+.++-++..++.++..++.+..    .|..........+.    .....+.+ ...+..... .
T Consensus        77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (222)
T TIGR00803        77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIG-Y  151 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccC-C
Confidence            01223456788888888888888888888876654321    22222222211111    11111101 011110000 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          258 LLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       258 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      -.......+....+..+..+.+|+.++...+....++++++.+++++++||+++..++.|+.+++.|++++
T Consensus       152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            01111222337778888999999999999999999999999999999999999999999999999987653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.85  E-value=6.4e-08  Score=77.06  Aligned_cols=121  Identities=13%  Similarity=0.149  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HH
Q 042257          191 KGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SC  269 (383)
Q Consensus       191 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~  269 (383)
                      .|.++.+++.++-+...++.|+-.++.++ ...... .    . ...... .              .....+++|++ ++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~-~--------------~p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF-G--------------LALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH-h--------------ccHHHHHHHHHHHH
Confidence            47889999999999999999998887653 221111 0    0 000000 0              01123556778 99


Q ss_pred             HHHHHHHHHHhccCccceeecchhHHHHHHHHHHH--HhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSF--FLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~--~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      +++.+|.+++++.+.+.+.++....+++..+.++.  +++|+++..+++|+++|++|+++..+.++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999998888888885  89999999999999999999999875444

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.84  E-value=4.9e-08  Score=90.50  Aligned_cols=141  Identities=14%  Similarity=0.195  Sum_probs=108.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CC-HHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQ--GMSPYVLVAYRMVVATILIAPFAFVLERKTRPK---------MT-LPIFA   80 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~   80 (383)
                      ...|.++.++++++|+...+..|... +  +.||...+++....+.+.++|+....+......         .. ...+.
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            45699999999999999999999884 5  789999999999999999998876543211000         00 01111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           81 KIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        81 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      ..+..+.......+.+++.+++++++..++++..+.|++++++++++++|+++..+      ++|.++.+.|+.+....+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHHHHh
Confidence            12222332223344677789999999999999999999999999999999999999      999999999999987433

specificities overlap.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=7.2e-09  Score=92.37  Aligned_cols=273  Identities=12%  Similarity=0.138  Sum_probs=167.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHHH
Q 042257            9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKT-RPKMTLPIFAKIALVSL   87 (383)
Q Consensus         9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~   87 (383)
                      +.++...|.++.+.+.++.|.+..+-|....+ ...   ..               .|..+. .+..  ++  +....|+
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~---------------~ra~~gg~~yl--~~--~~Ww~G~   71 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SG---------------LRAGEGGYGYL--KE--PLWWAGM   71 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hc---------------ccccCCCcchh--hh--HHHHHHH
Confidence            44567789999999999999999999987522 110   00               111111 1222  22  3455788


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCC
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFP  167 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~  167 (383)
                      +.+.++....|.|+.+.|++..+++.++..+..++++..+++||++...      .+|..++++|-.+++.. .|..+-.
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~h-aP~e~~i  144 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIH-APKEQEI  144 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEe-cCccccc
Confidence            8889999999999999999999999999999999999999999999999      99999999998887743 2321111


Q ss_pred             cchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH--------HHH
Q 042257          168 WKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGT--------ILT  239 (383)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~  239 (383)
                      .+.++.-+       ...+... .-....+...++.=++  ..+   .++. ......|..+.+.+-.+        ..+
T Consensus       145 ~t~~el~~-------~~~~~~F-liy~~~iil~~~il~~--~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~a  210 (335)
T KOG2922|consen  145 ESVEEVWE-------LATEPGF-LVYVIIIILIVLILIF--FYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGIA  210 (335)
T ss_pred             ccHHHHHH-------HhcCccH-HHHHHHHHHHHHHHhe--eec---cccc-ccceeehhhHhhhhcceeeeeHHHHHHH
Confidence            11111000       0111111 1111111111111111  111   1211 12223333333333211        111


Q ss_pred             --HhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccc--c---
Q 042257          240 --LAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKL--Y---  311 (383)
Q Consensus       240 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~--~---  311 (383)
                        ....  +..+...  +..|..++.+..+......-.++|++..+++.++++.+ +-..++++.|.++|+|.-  +   
T Consensus       211 iklt~~--g~~ql~~--~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~  286 (335)
T KOG2922|consen  211 IKLTFS--GNNQLFY--PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALD  286 (335)
T ss_pred             HHHHhc--CCccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence              1111  2222222  23566666655556666666799999999999988888 567788888999999963  2   


Q ss_pred             -chhhhhHHHHHHHHHHhh
Q 042257          312 -LGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       312 -~~~~~G~~li~~gv~l~~  329 (383)
                       ...++|+..++.|+++..
T Consensus       287 i~~~~~Gf~ti~~G~flL~  305 (335)
T KOG2922|consen  287 IAGELCGFVTIFLGIFLLH  305 (335)
T ss_pred             HHHHHHhHHHhhheeeEee
Confidence             346788899999988874

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.76  E-value=4.5e-08  Score=76.71  Aligned_cols=107  Identities=20%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHH
Q 042257          226 LICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSF  304 (383)
Q Consensus       226 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~  304 (383)
                      +....+.+..........+ ..+.+.......+...+..|++ ...++.++.+++++.+ ..+.++..+.|+++.+++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            3444555555554443222 1122222222345566666777 5699999999999999 58889999999999999999


Q ss_pred             HhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          305 FLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       305 ~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      +++|+++..+++|.+++++|+.+..+.+.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999886654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.74  E-value=3.7e-07  Score=75.62  Aligned_cols=133  Identities=19%  Similarity=0.288  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----C-------CHHH
Q 042257           16 PYLGVIFMQFCYSIMSVIAKLALNQ------GMSPYVLVAYRMVVATILIAPFAFVLERKTRPK----M-------TLPI   78 (383)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~   78 (383)
                      |.++++++.++.++..+..|..+.+      +.++.....+....+.+++.+.+...+......    .       +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5788999999999999999987744      789999999999999999999888765543111    0       2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257           79 FAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC  155 (383)
Q Consensus        79 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l  155 (383)
                      +..++..|++. ...+...+..++++++...+++.....+++.++++++++|+++..+      ++|+.+++.|+++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence            55555566665 7889999999999999999999999999999999999999999998      9999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.69  E-value=5.5e-07  Score=82.80  Aligned_cols=128  Identities=15%  Similarity=0.115  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH----HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257           14 AKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMV----VATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (383)
                      .+|+++.+++.++++...+..|..   +.+|...++..+.    .+.++..+.    ++ .++. ..+.....++.|++.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----IL-AKPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hc-ccch-HHHHHHHHHHHHHHH
Confidence            679999999999999999999977   4888888766666    444444333    11 1222 233444456688885


Q ss_pred             HHHHHHHHHhhcc-ccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchh----hHHHHHHHHHHHHH
Q 042257           90 PVISQNLYYTGMK-YTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKI----LGTIVTAGGAMCMT  157 (383)
Q Consensus        90 ~~~~~~~~~~al~-~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~----~gi~l~~~Gv~li~  157 (383)
                       .+++.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++      +    +|.++.+.|+.++.
T Consensus       222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG  287 (290)
T ss_pred             -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence             999999999999 9999999999999999999999999999999999      9    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.66  E-value=9.8e-07  Score=83.37  Aligned_cols=139  Identities=13%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHhhhcCCC-----------CCCC
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQ------GMSPYVLVAYRMVVATILIAPFAFVLERKTR-----------PKMT   75 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-----------~~~~   75 (383)
                      ...|.+++++++++|+...++.|....+      +.++.....+....+.++++|+....+....           ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4679999999999999999999988532      3567777777788888888888764322110           0001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257           76 LPIFAKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC  155 (383)
Q Consensus        76 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l  155 (383)
                      ........+.+.+.....+.+.|.+++++++..+++...+.|+++.++++++++|+++..+      ++|.++++.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHHH
Confidence            1111111222222223344444569999999999999999999999999999999999999      9999999999987


Q ss_pred             HH
Q 042257          156 MT  157 (383)
Q Consensus       156 i~  157 (383)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.64  E-value=8.4e-07  Score=68.94  Aligned_cols=68  Identities=15%  Similarity=0.087  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257           84 LVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT  157 (383)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~  157 (383)
                      ..++++...+..++..++++.|.+.+..+.++.++++++++++++|||++.++      ++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            34446678899999999999999999999999999999999999999999998      999999999999875

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.61  E-value=1.9e-06  Score=79.04  Aligned_cols=135  Identities=13%  Similarity=0.246  Sum_probs=107.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVA-YRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPV   91 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (383)
                      ...|.++.++++++|+...+..|...  ..++..... +.......+..+...  .... .....+.+......|+++..
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999883  566666666 444322222222222  1111 34456788889999999866


Q ss_pred             HHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           92 ISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        92 ~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .++.++++++++.+++.++++..+.|++..++++++++|+++..+      ++|+++.+.|+.+...
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~~  287 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999      9999999999998863

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.53  E-value=1.3e-06  Score=77.24  Aligned_cols=140  Identities=17%  Similarity=0.219  Sum_probs=115.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccce-eccchhHHHHHHHHHH
Q 042257          189 LTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWL-LHFDAKLLAVIYGGFV  267 (383)
Q Consensus       189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~  267 (383)
                      ...|+++++.+-+.|+..-.+.|.+ +..+ +..+..++.+.+.+.......+..+ ..+-+. ...+..+......++.
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHHHH
Confidence            3479999999999999998888765 4444 5788899988888877777665543 222222 2334567777777777


Q ss_pred             HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      -.....++.||..+.....+|.-.+++|.+.+++|.++++|+++..|++..++..+|+....+.
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999877653

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.47  E-value=3.6e-06  Score=72.73  Aligned_cols=140  Identities=16%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHH
Q 042257           10 LSHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (383)
                      ..-...|..+.+.+..+|+.+-+..|.. .+..+.-.-+..-++++.++.+|+-.......  -.++.....-+..++++
T Consensus       143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlS  219 (292)
T COG5006         143 WSLDPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLS  219 (292)
T ss_pred             CcCCHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHh
Confidence            3445689999999999999999999988 35677777788889999999999887543332  34456677778889999


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      ..+.+.+-..++++.|....+++.++.|.+..+.++++++|+++..|      |+++...+.+..-..+
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~l  282 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGSTL  282 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999      9999988887765544

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.46  E-value=1.3e-06  Score=67.95  Aligned_cols=65  Identities=11%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             HHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          265 GFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       265 g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      +++ .+.++.++..++++.+.+.+-++.++.++++.+++++++||+++..+++|.+++++|+.+..
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            335 78899999999999999999999999999999999999999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.35  E-value=1.1e-05  Score=64.20  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQ   94 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (383)
                      +++++++++.++-+...++.|... ++.+....... . ..   .+ ...        ..+    ...+..|++.+.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~-~~---~~-~~~--------~~p----~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-F-IA---AL-LAF--------GLA----LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-H-HH---HH-HHH--------hcc----HHHHHHHHHHHHHHH
Confidence            478899999999999999999885 43333221111 0 00   00 000        001    124667888889999


Q ss_pred             HHHHhhccccchhhHHHhhhhhHHHHHHHHHH--HhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257           95 NLYYTGMKYTTATFTVAMCNILPALTFLMAWI--FRLEKVKIKSTHSQAKILGTIVTAGGAMCMT  157 (383)
Q Consensus        95 ~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~--~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~  157 (383)
                      .++.+++++.|++.+.++.+..+.++.+.++.  +++|+++..+      ++|+++.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            99999999999999999999999889888885  8999999998      999999999999986

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=98.21  E-value=0.00089  Score=61.23  Aligned_cols=301  Identities=14%  Similarity=0.118  Sum_probs=185.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-hhcCC----CCCCCHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFV-LERKT----RPKMTLPIFAKIALVSL   87 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~g~   87 (383)
                      -..|+++..++.++=|...+-.|..  ++++--..-....+++-+++ |+... ..-+.    ....+...+....+.|+
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            4578999999999999999999988  56654444444444443333 33222 11111    12234566777777888


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhccc-ccccccccchhhHHHHHHHHHHHHHhhcCCccc
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKV-KIKSTHSQAKILGTIVTAGGAMCMTLLKGPILK  165 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~-~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~  165 (383)
                      +- .++...|=.+++|++.+..+-+ ..+..++-.++-.++.++-- -..++..+.-++|++++++|+.+...... ..+
T Consensus        82 lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~-~Ke  159 (344)
T PF06379_consen   82 LW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS-MKE  159 (344)
T ss_pred             HH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH-hhh
Confidence            86 8889999999999999988544 47777788887777654310 02233455569999999999999875431 110


Q ss_pred             CCcchhhhhcccccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHh------hcCC-chh----HHHHHHHHHHHHH
Q 042257          166 FPWKQVRLLHNQLETGIQNNEEDLTKGALLIAAGCFAWSCFIILQAFLL------KSYP-AEL----SLTALICFMSSVE  234 (383)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~------~~~~-~~~----~~~~~~~~~~~i~  234 (383)
                           .       +.+++..+.+..+|.++++++.+.-|+++.-...-.      .... +|.    ......+.-+.+.
T Consensus       160 -----~-------~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~t  227 (344)
T PF06379_consen  160 -----K-------ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFIT  227 (344)
T ss_pred             -----h-------hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHH
Confidence                 0       011123445667999999999999888877543210      0000 111    1223344455566


Q ss_pred             HHHHHHhhhcC--CCc---cceec-c--chhHHHHHHHHHHHHHHHHHHHHHHhccCc----cceeecchhHHHHHHHHH
Q 042257          235 GTILTLAIERG--NTG---IWLLH-F--DAKLLAVIYGGFVSCTAYFIMGWLMKRRGP----VFVSSFNPLGMVIIAVLG  302 (383)
Q Consensus       235 ~~~~~~~~~~~--~~~---~~~~~-~--~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~----~~~s~~~~~~pv~~~l~~  302 (383)
                      ....+++....  +..   .+... +  .......+..|++=..++++|..+-.+.+.    .--.+.+.+..+++-+++
T Consensus       228 N~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG  307 (344)
T PF06379_consen  228 NLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG  307 (344)
T ss_pred             HHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence            66666543210  111   11111 1  123444455566666677777777776663    344567778888999999


Q ss_pred             HHHhcccc------cchhhhhHHHHHHHHHHhhhc
Q 042257          303 SFFLAEKL------YLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       303 ~~~~~e~~------~~~~~~G~~li~~gv~l~~~~  331 (383)
                      . +++|.-      -...++|+++++.++.+.-++
T Consensus       308 l-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G  341 (344)
T PF06379_consen  308 L-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG  341 (344)
T ss_pred             H-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            7 688842      244688999999988877654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.17  E-value=4.8e-05  Score=70.56  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=100.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257          189 LTKGALLIAAGCFAWSCFIILQAFLLKS-YPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV  267 (383)
Q Consensus       189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (383)
                      ...+.+++-.-++|-+...+.+..+.++ .+.|...+++....-.++..+.... .+ +...+.......|+.-+.++++
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~-r~-~~~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLY-RR-GFKKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhh-cc-ccccchhhcchhHHHHHHHHHH
Confidence            3445555555566666666666655555 2235555555544444444443332 22 2222222223345555556888


Q ss_pred             HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCC
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      -..++++...|.++++.+.++++.....++++++++++++++.++.+++|+++.++|+.+....+..
T Consensus        89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            8889999999999999999999999999999999999999999999999999999999988776543

Some of the sequences in this family are annotated as putative membrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.06  E-value=6.2e-05  Score=67.16  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=93.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP   90 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (383)
                      ++..++++.++++.+.+..+.++.|..   +.++....+-+.+...+....+....+++.    ..+...+-.+.|++- 
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~----~~k~~~~nil~G~~w-  205 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKPF----FEKKSWKNILTGLIW-  205 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcccccc----cccchHHhhHHHHHH-
Confidence            345779999999999999999998886   678888877776666666555555432221    122233446667775 


Q ss_pred             HHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhccccccc
Q 042257           91 VISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKS  136 (383)
Q Consensus        91 ~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~  136 (383)
                      ..++.+++.|.+..+.+.+-.+.++.++...+.+.+++||+=++++
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke  251 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE  251 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence            9999999999999999999999999999999999999999988776

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.01  E-value=2.2e-06  Score=74.53  Aligned_cols=137  Identities=13%  Similarity=0.179  Sum_probs=102.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257          188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV  267 (383)
Q Consensus       188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (383)
                      ...+|..+..++ ..+...+++.++.....  |+.......++-.++..+..++... .  .+.......|  ++.=|+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~-~--v~gp~g~R~~--LiLRg~m  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQ-P--VIGPEGKRKW--LILRGFM  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEee-e--eecCCCcEEE--EEeehhh
Confidence            445788888888 77777777777765543  4565666666666666665543322 1  1222222222  3334666


Q ss_pred             HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      +..+.++.+|++++.+-+.+..+....|+++.+++|++++|+.+....+|..+.+.|+++..+..
T Consensus       107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            88888999999999999999999999999999999999999999999999999999999988654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.96  E-value=0.00015  Score=67.31  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHhhcCC-c--hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHHHHHHHHHH
Q 042257          203 WSCFIILQAFLLKSYP-A--ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLM  279 (383)
Q Consensus       203 ~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~  279 (383)
                      +..+.+++++..++.. .  +..+++.+.....+...+......      ....+...+...+..+++..++..+.+.++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK------FPKSRKIPLKKYAILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc------ccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345567777766643 2  567777777777776666554332      111122234445555777888889999999


Q ss_pred             hccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCCCCCC
Q 042257          280 KRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKDRSPS  339 (383)
Q Consensus       280 ~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~~~~  339 (383)
                      ++.+.....+.....|+.++++++++++++.+..++++++++.+|+.+....+.++.+.+
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~  145 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS  145 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence            999999999999999999999999999999999999999999999999988766544433

; GO: 0055085 transmembrane transport

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.87  E-value=7.5e-05  Score=58.39  Aligned_cols=65  Identities=18%  Similarity=0.411  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      .+++++++..++|+.+.+.+=.+ ..+..+.+.+.++++++|+++..+++|+++|++|+.......
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            88899999999999998755444 568999999999999999999999999999999998875443

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.84  E-value=0.00034  Score=56.55  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA  271 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  271 (383)
                      ..++++++.++-++...++.++.++.++|....+..+..+.+....+.++.++ .  .........|+..+ -|+++...
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~-~--~~~~~~~~p~w~~l-GG~lG~~~   77 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR-P--SLASLSSVPWWAYL-GGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc-c--ccchhccCChHHhc-cHHHHHHH
Confidence            35788999999999999999998888777888999999999998888877664 2  22211222233322 35567787


Q ss_pred             HHHHHHHHhccCccceeec-chhHHHHHHHHHHH----HhcccccchhhhhHHHHHHHHHH
Q 042257          272 YFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSF----FLAEKLYLGRIIGAVIIVIGLYM  327 (383)
Q Consensus       272 ~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~----~~~e~~~~~~~~G~~li~~gv~l  327 (383)
                      ..+..+.+++.+++....+ ..-+.+.+++++.+    .-++++++.+++|.++++.|+.+
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            8888999999998755544 45677777888875    23456899999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.76  E-value=0.00011  Score=67.69  Aligned_cols=119  Identities=21%  Similarity=0.208  Sum_probs=89.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHH
Q 042257          187 EDLTKGALLIAAGCFAWSCFIILQAFLLKSYPA-ELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGG  265 (383)
Q Consensus       187 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  265 (383)
                      .+...|+.+++.++++.+....++|+...+.+. +....  ..        ...+         +  .++ .|+.    |
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~---------l--~~~-~W~~----G   56 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY---------L--RRP-LWWI----G   56 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH---------H--hhH-HHHH----H
Confidence            345789999999999999999999998776542 01100  00        0000         0  011 2222    3


Q ss_pred             HH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257          266 FV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       266 ~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      ++ ..++..+...|+...+++.++++..+..+++.+++..+++|+++...+.|+++++.|..+....
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            33 5666777788999999999999999999999999999999999999999999999998876543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.71  E-value=0.00032  Score=65.19  Aligned_cols=144  Identities=10%  Similarity=0.052  Sum_probs=98.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-----HHhhhcCCCccceeccchhHHHHH
Q 042257          188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTIL-----TLAIERGNTGIWLLHFDAKLLAVI  262 (383)
Q Consensus       188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  262 (383)
                      +...|+++.+++++|++.+.+-.|+ .+..+  .+.. |. ..+. +...+     +.+..+...+.....+...+...+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            3468999999999999999998888 45443  3333 33 2222 22111     111112111222323445667777


Q ss_pred             HHHHHHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccc---c----chhhhhHHHHHHHHHHhhhccCC
Q 042257          263 YGGFVSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKL---Y----LGRIIGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       263 ~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~---~----~~~~~G~~li~~gv~l~~~~~~~  334 (383)
                      ..|++=.+++..+..++++.+.+...++.. ++.+.+.+++.+++||-.   +    ...++|.+++++|+.+..+..++
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            778888889999999999999987766655 889999999999999865   2    34688999999999999885544


Q ss_pred             CCC
Q 042257          335 DRS  337 (383)
Q Consensus       335 ~~~  337 (383)
                      +++
T Consensus       158 k~~  160 (345)
T PRK13499        158 KER  160 (345)
T ss_pred             ccc
Confidence            333

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.69  E-value=0.00021  Score=55.18  Aligned_cols=65  Identities=20%  Similarity=0.421  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhccCccce-eecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          268 SCTAYFIMGWLMKRRGPVFV-SSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      ..+++.++..++++.+.+.+ +....+..+.+.+.++++++|++++.+++|+++|+.|+.......
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            78888889999999987654 444568889999999999999999999999999999999986544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.62  E-value=0.00019  Score=64.12  Aligned_cols=80  Identities=10%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257          256 AKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD  335 (383)
Q Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~  335 (383)
                      .+......-+++..+.+.+.+.++++.+|+...++..++.+++.++++++++.+++..||.+..+.++|+.+........
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            35566666777899999999999999999999999999999999999999999999999999999999999988776654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.61  E-value=0.00025  Score=55.48  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           85 VSLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        85 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      ..+.++..++.++..+++++|.+.+..+. .+.-+.++++++++++|+++..+      ++|+.+.++|++++-.
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence            34555688899999999999999998775 79999999999999999999998      9999999999988864

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.0013  Score=53.09  Aligned_cols=139  Identities=16%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHH
Q 042257          190 TKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSC  269 (383)
Q Consensus       190 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  269 (383)
                      ....+.++++.++-........++.+..++|.......+.++++.+..+.++.+.  ...+.......|+... -|++..
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~~~-GG~lGa   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWAWI-GGLLGA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHHHH-ccchhh
Confidence            4677889999999999999999999988888899999999999988888877443  2222222221222222 244455


Q ss_pred             HHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhc----ccccchhhhhHHHHHHHHHHhhhc
Q 042257          270 TAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLA----EKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       270 ~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~----e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      +--+.......+.+++ .......-+.+.+++++-+=+.    .+++..++.|.+++++|+++..+.
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            5455556667777765 5666667788888888865333    458999999999999996665443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00042  Score=52.38  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .++++.+++.++-.|++++|.+.+..+ .....+.+++.++++++|+++..+      ++++.+.++|++.+-.
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhhh
Confidence            444557889999999999999999665 589999999999999999999998      9999999999998753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.55  E-value=0.0014  Score=50.30  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHH
Q 042257           87 LFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCM  156 (383)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li  156 (383)
                      +.++..++.+...+++++|.+.+..+. ....+.+++.+++++||+++..+      ++|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            444577888999999999999996665 78899999999999999999998      99999999999886

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.52  E-value=0.00042  Score=52.96  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          268 SCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      ..+++++...++|+.+.+ -.+...-+..+.+.+.++++++|++++.+++|+.+++.|+.....
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            788899999999999876 566667789999999999999999999999999999999988754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.51  E-value=0.00054  Score=52.88  Aligned_cols=67  Identities=18%  Similarity=0.334  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .++++..++.++..++++.|.+.+..+. .+..+.++++++++++|+++..+      ++|+.+.++|++++-.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            4555678888999999999999997774 68999999999999999999998      9999999999999864

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.49  E-value=0.002  Score=52.05  Aligned_cols=130  Identities=14%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           17 YLGVIFMQFCYSIMSVIAKLALNQGM-SPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      .++.+++..+-+.+..+.-.. .+.. +|+..+++.+..+++++..+....+++.....+.-. ++...-|+++ +..-.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG-~~~V~   79 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLG-VFFVL   79 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHH-HHHHH
Confidence            466777888888888887776 3555 499999999999999998888876654322222112 2334467777 78888


Q ss_pred             HHHhhccccchhhHHHhhhh-hHHHHHHHHHH----HhhcccccccccccchhhHHHHHHHHHHH
Q 042257           96 LYYTGMKYTTATFTVAMCNI-LPALTFLMAWI----FRLEKVKIKSTHSQAKILGTIVTAGGAMC  155 (383)
Q Consensus        96 ~~~~al~~~~~~~a~~l~~~-~pi~~~ll~~~----~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l  155 (383)
                      +..+.....+++.+..+.-. +-+...++..+    .-+++++..+      ++|+++.++|+.+
T Consensus        80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence            88889999999998777644 44444555554    3556777675      9999999999863

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00038  Score=52.65  Aligned_cols=65  Identities=18%  Similarity=0.358  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          268 SCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      ...+|.+...++|+.+.. -.++..-...+.+.+.++++|+|+.+..+++|.+++++|+......+
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            777888999999999875 56777888999999999999999999999999999999999876543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.48  E-value=0.0016  Score=49.98  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhh
Q 042257          267 VSCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVL  329 (383)
Q Consensus       267 ~~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~  329 (383)
                      ...+++++...++|+.+.+ -.++..-+..+.+.+.++++++|++++.+++|+++|+.|+....
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3788889999999999876 55666778889999999999999999999999999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.43  E-value=0.00086  Score=61.59  Aligned_cols=146  Identities=13%  Similarity=0.165  Sum_probs=117.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCCHHHHHHH
Q 042257            9 FLSHNAKPYLGVIFMQFCYSIMSVIAKLALNQ---GMSPYVLVAYRMVVATILIAPFAFVLER---KTRPKMTLPIFAKI   82 (383)
Q Consensus         9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   82 (383)
                      +-.+...|-++.+++++++|...++.|.-.++   ..|--.+..+-.++..+++||..+....   +...-++..+....
T Consensus       241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~v  320 (416)
T KOG2765|consen  241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLV  320 (416)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEee
Confidence            33456889999999999999999999987522   3566666666777888888876665432   22222333445556


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           83 ALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        83 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      +..++++.+++.+++.+|.-.+++-.+++-.+++....++.-.++.+.++++..      ++|.+..++|.+++...+
T Consensus       321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhheeccc
Confidence            778899999999999999999999999999999999999999999999999998      999999999999987543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.41  E-value=0.00037  Score=53.63  Aligned_cols=109  Identities=12%  Similarity=0.208  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042257           21 IFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQNLYYTG  100 (383)
Q Consensus        21 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  100 (383)
                      ++..++||..+.+.|... ++.++..-.. |..-....+                ...|. +.+.-+++ -.+...|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~L----------------l~n~~-y~ipf~lN-q~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFL----------------LLNPK-YIIPFLLN-QSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHH----------------HHhHH-HHHHHHHH-HHHHHHHHHH
Confidence            456789999999999984 5555444331 321111111                11112 22222333 6678889999


Q ss_pred             ccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHH
Q 042257          101 MKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMC  155 (383)
Q Consensus       101 l~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l  155 (383)
                      +...+.+.+.++. ++.-+||++.++++.+|..+++.      ++|+.+.++|+.+
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVAL  111 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeee
Confidence            9999999999995 99999999999888777777776      9999999999765

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.39  E-value=0.00095  Score=50.99  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHH
Q 042257           87 LFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMT  157 (383)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~  157 (383)
                      ++++..++.+...+++++|.+.+..+. ....+.+++.+++++||+++..+      ++|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence            445578899999999999999996665 69999999999999999999998      999999999999875

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.36  E-value=0.00058  Score=62.72  Aligned_cols=139  Identities=13%  Similarity=0.236  Sum_probs=112.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHhhhcCCC----C-CCCHHHHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLAL---NQGMSPYVLVAYRMVVATILIA-PFAFVLERKTR----P-KMTLPIFAKI   82 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~----~-~~~~~~~~~~   82 (383)
                      -+..|.+.++++.+.+++..++.|..+   ..+.+++.......-++.+.++ |+....+....    . ..+...+. .
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-L  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-H
Confidence            357899999999999999999999887   3468999999998888988888 87766444332    1 22333333 3


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           83 ALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        83 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      ....++. ...|..-|..++++++-..++....--+++.+.+++++++++++.+      ..|.+++++|+.+=..
T Consensus       239 ~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  239 LLNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHHH
Confidence            3334555 6677888999999999999999999999999999999999999999      9999999999998653

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.23  E-value=0.0039  Score=55.53  Aligned_cols=190  Identities=8%  Similarity=0.029  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042257           16 PYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVISQN   95 (383)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (383)
                      |++..+++++++|.+++-.|..  +..|++.+-++.+....+.-+.....++.   +.    .+++.++-|.+- +.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~----f~p~amlgG~lW-~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGF---PP----FYPWAMLGGALW-ATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCC---Cc----ceeHHHhhhhhh-hcCce
Confidence            5778999999999999999987  56788888888777777766666555322   22    123344445554 88999


Q ss_pred             HHHhhccccchhhHHHhhhhhHHHH-HHHHHH-HhhcccccccccccchhhHHHHHHHHHHHHHhhcCCcccCCc-----
Q 042257           96 LYYTGMKYTTATFTVAMCNILPALT-FLMAWI-FRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLKGPILKFPW-----  168 (383)
Q Consensus        96 ~~~~al~~~~~~~a~~l~~~~pi~~-~ll~~~-~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~-----  168 (383)
                      +-.-.++.++.+....+.+..-+.+ -..+.+ +++++.+.. .....-.+|++++++|..+...-+.+......     
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            9999999999999999987654443 333333 455444433 12344578888888888877654433211100     


Q ss_pred             --chhhhhccccc----ccCCC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042257          169 --KQVRLLHNQLE----TGIQN-----NEEDLTKGALLIAAGCFAWSCFIILQAFLLKS  216 (383)
Q Consensus       169 --~~~~~~~~~~~----~~~~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~  216 (383)
                        ..++..+..++    +.++.     ...+...|..+++++++.|+...+=..+..++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence              11101110010    00010     11246789999999999999887766665444

The region concerned is approximately 280 residues long.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.96  E-value=0.0014  Score=58.34  Aligned_cols=134  Identities=10%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA  271 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  271 (383)
                      |.+.+++|+++++...+=.|+.-..  |++....++.....+..+.+.++.+.   ..       .+.+.+.-|.+-..+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~---p~-------f~p~amlgG~lW~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF---PP-------FYPWAMLGGALWATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC---Cc-------ceeHHHhhhhhhhcC
Confidence            5677889999999888887765332  45666666666555555555543321   11       122223334556667


Q ss_pred             HHHHHHHHhccCccceeecch-hHHHHHHHHHHH-Hhcccc-----cchhhhhHHHHHHHHHHhhhccCCCCC
Q 042257          272 YFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSF-FLAEKL-----YLGRIIGAVIIVIGLYMVLWGRNKDRS  337 (383)
Q Consensus       272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~-~~~e~~-----~~~~~~G~~li~~gv~l~~~~~~~~~~  337 (383)
                      +.+-.-.+|..+-...-.+-. .+.+.+-..+.+ +||+.+     +...++|.+++++|..++..-|...++
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~  141 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE  141 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence            777788888888665444443 466666666654 565543     466899999999999988877765533

The region concerned is approximately 280 residues long.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.94  E-value=0.0052  Score=46.03  Aligned_cols=55  Identities=22%  Similarity=0.450  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhccCccce-eecchhHHHHHHHHHHHHhcccccchhhhhHHHH
Q 042257          267 VSCTAYFIMGWLMKRRGPVFV-SSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVII  321 (383)
Q Consensus       267 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li  321 (383)
                      ...++++++..++|+.+.+.+ .....+..+...+.+.+++||+++..+++|+++|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            378888999999999998866 4455689999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.00046  Score=59.76  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHHHHHH
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFVSCTA  271 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  271 (383)
                      .++++++=++.|+..-....+...   .|...+.-+.+-+.++.+.+.++..+  ..     ....+..-+..|++=.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~~~p--~~-----T~~~~iv~~isG~~Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLFVSP--EL-----TLTIFIVGFISGAFWSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHheeecC--cc-----chhhHHHHHHhhhHhhhh
Confidence            568889999999987776544322   34555544444444444444443221  11     112344445556667778


Q ss_pred             HHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhcccccchhh----hhHHHHHHHHHHhhhccCC
Q 042257          272 YFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKLYLGRI----IGAVIIVIGLYMVLWGRNK  334 (383)
Q Consensus       272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~gv~l~~~~~~~  334 (383)
                      +...+++++..+.+++.++.. .+.+-+.++++++|||..+..+.    +..++++.|+++..++++.
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~  140 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN  140 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence            999999999999999999887 78889999999999999887653    3466777888877765553

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.85  E-value=0.0037  Score=46.84  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHH
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIV  148 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l  148 (383)
                      .+.+...+..++..++++.|.+.+..+. .+..+.+.+.+.+++||+++..+      +.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            4445578889999999999999997765 69999999999999999999998      888875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.094  Score=48.37  Aligned_cols=142  Identities=13%  Similarity=0.041  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHHHHHHHHhhhcC-------CCccceeccchhHHHH
Q 042257          192 GALLIAAGCFAWSCFIILQAFLLKSYPA---ELSLTALICFMSSVEGTILTLAIERG-------NTGIWLLHFDAKLLAV  261 (383)
Q Consensus       192 G~~~~l~a~~~~a~~~v~~k~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  261 (383)
                      -.+..+...+-.+......|+..++.++   |.+..+..-+.-.++.....+.-++.       ....+....+.+..-+
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~   95 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence            3344444455555555666665554421   34555555555555555555443210       0111111122234444


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          262 IYGGFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       262 ~~~g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      ..-++++.+.+.+++.++.+.++++..+...+..+-+.++++++++++++..||...++...|+.+.++...
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence            455566888888999999999999999999999999999999999999999999999999999999985443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.47  E-value=0.041  Score=49.53  Aligned_cols=140  Identities=11%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCHHHHHHHHH
Q 042257           11 SHNAKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTRP-----KMTLPIFAKIAL   84 (383)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   84 (383)
                      .+...|++++....++=|..+...+..+ ...++++.+.+.-.++.+++-....+..+ ..++     +..++.++-+++
T Consensus       168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg-~~~~av~F~~~hp~~~~Di~l  246 (327)
T KOG1581|consen  168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQG-HLLPAVSFIKEHPDVAFDILL  246 (327)
T ss_pred             CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHcChhHHHHHHH
Confidence            4567899999999999999988888776 34678999988888888887766544322 1111     234566677888


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           85 VSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        85 ~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .+.++ ++++.+-|+-++.-++-.-+.+.-+-=++..+++.++++.+++..|      |.|+.+.+.|..+=..
T Consensus       247 ~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  247 YSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHHH
Confidence            88888 8889988889988777777788888889999999999999999999      9999999999887554

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.42  E-value=0.008  Score=46.32  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH-HHHHHHHHH
Q 042257          198 AGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV-SCTAYFIMG  276 (383)
Q Consensus       198 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~  276 (383)
                      +-+++|++.+-+.||..+..++...- . + ...-...    ++.              .|-..+  ... ...+...|+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~-~~~~~~~----Ll~--------------n~~y~i--pf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-Q-LLQEIKF----LLL--------------NPKYII--PFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-H-HHHHHHH----HHH--------------hHHHHH--HHHHHHHHHHHHH
Confidence            34788999999999988876632221 1 1 1111111    111              111111  334 778888999


Q ss_pred             HHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Q 042257          277 WLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYM  327 (383)
Q Consensus       277 ~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l  327 (383)
                      +.+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|++++++|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            99999999999998 5899999999998766666788899999999999865

Many members are annotated as potential transmembrane proteins.

>TIGR00803 nst UDP-galactose transporter

Probab=96.26  E-value=0.017  Score=50.83  Aligned_cols=135  Identities=10%  Similarity=-0.003  Sum_probs=81.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMSP--YVLVAYRMVVATILIAPFAFVLERKTRPKMT--LPIFAKIALVSL   87 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~   87 (383)
                      +...+....+.+.++-+...+..+... +..+.  ..-...-.....+.................+  ...-.......+
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~-k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKIL-KDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL  160 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcc-cCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence            345666677777777777888877764 32221  1111111111111111111111111101100  000111223334


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHH
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAM  154 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~  154 (383)
                      ++ +.+..+..+.++|.++...+....+.++++.+++.++++|+++..+      +.|+.+.+.|+.
T Consensus       161 ~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~  220 (222)
T TIGR00803       161 LN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATF  220 (222)
T ss_pred             HH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeE
Confidence            44 6777888999999999999999999999999999999999999998      999999888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.33  Score=39.46  Aligned_cols=137  Identities=13%  Similarity=0.037  Sum_probs=79.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLALNQGMSPYVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEPVI   92 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (383)
                      ....++..+++..+-..+..+.-.+....-+|....+..+..+++++..+.+...+........+..++.+.-|+++ +.
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~   81 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI   81 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence            34566777788888888777776653233359999999999999988888777333322221122223334445555 44


Q ss_pred             HHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHH----hhcccccccccccchhhHHHHHHHHHHHH
Q 042257           93 SQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIF----RLEKVKIKSTHSQAKILGTIVTAGGAMCM  156 (383)
Q Consensus        93 ~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~----~~e~~~~~~~~~~~~~~gi~l~~~Gv~li  156 (383)
                      .-..........+++....+. .-+-+...++-.+=    -+++++..      |++|+++.++|+.++
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~  144 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence            444444455555555554433 33333333333322    12334444      599999999995554

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.47  E-value=0.088  Score=48.48  Aligned_cols=147  Identities=16%  Similarity=0.056  Sum_probs=92.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH--HhhhcCCCccceeccchhHHHHHHHH
Q 042257          188 DLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT--LAIERGNTGIWLLHFDAKLLAVIYGG  265 (383)
Q Consensus       188 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g  265 (383)
                      +...|+++..+++++-+.+.+=.||. |+.+  .+.......+-..+..|..  ++..++..+.+...+...+....+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            45689999999999999999988774 4443  3333322222222223322  22222122223333444566667778


Q ss_pred             HHHHHHHHHHHHHHhccCcc-ceeecchhHHHHHHHHHHHHhcc-------cccchhhhhHHHHHHHHHHhhhccCCCCC
Q 042257          266 FVSCTAYFIMGWLMKRRGPV-FVSSFNPLGMVIIAVLGSFFLAE-------KLYLGRIIGAVIIVIGLYMVLWGRNKDRS  337 (383)
Q Consensus       266 ~~~~~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~l~~~~~~~e-------~~~~~~~~G~~li~~gv~l~~~~~~~~~~  337 (383)
                      ++=+++...|..++|+++.+ -.++..-+..++..++--++.++       .-....++|.++.++|+.+..+....+++
T Consensus        81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~  160 (344)
T PF06379_consen   81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK  160 (344)
T ss_pred             HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence            88778888999999999876 44555556666666665555432       12346789999999999998876554433

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=0.16  Score=46.15  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=108.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcC-----CCC-CCCHHHHHHHHHH
Q 042257           13 NAKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERK-----TRP-KMTLPIFAKIALV   85 (383)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~   85 (383)
                      ...|+.++....+.-+...+..|... ..+..-+.+.++..+.+.+.+....+..+..     ..+ ......+....+.
T Consensus       155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            34589999999999999999999875 3567788899999999999888777554321     111 2234556667777


Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      ++++ .+-+.+.+++.+..++...++.....-..+.+...++.+++.++..      ++|+.++++|.++=..
T Consensus       235 cv~g-f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n------~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  235 CVMG-FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLN------VIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHHH-HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhh------hHHHHHHhhhhhHHhh
Confidence            7777 7777888899999999888888877777777777777889999888      9999999999888653

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.03  E-value=0.2  Score=43.15  Aligned_cols=138  Identities=12%  Similarity=0.112  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHHHHHHHHHHHHH
Q 042257           15 KPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTR----PKMTLPIFAKIALVSLFE   89 (383)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~   89 (383)
                      .|++++...++.-+..-...|.-. -.+.......++.-+.+.++++.+.+..+.+..    ...+.......++.|++.
T Consensus       155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s  234 (309)
T COG5070         155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS  234 (309)
T ss_pred             CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence            366777776666666655555432 145667888999999999999888776543321    123445566778888887


Q ss_pred             HHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 042257           90 PVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLL  159 (383)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~  159 (383)
                       ++-..|.-|+.+.++....+++..+.-.-..+.+.++++|+.+...      +.++.++++...+-...
T Consensus       235 -vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s------i~sillGflsg~iYava  297 (309)
T COG5070         235 -VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYAVA  297 (309)
T ss_pred             -hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHHHH
Confidence             7777888899999999999999999999999999999999999887      99999998887775543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.013  Score=53.00  Aligned_cols=121  Identities=25%  Similarity=0.265  Sum_probs=91.3

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHH
Q 042257          185 NEEDLTKGALLIAAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYG  264 (383)
Q Consensus       185 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (383)
                      ....+..|..+++.+.+..+....+.|+..++...    .              ..  .. ......... ..++   +.
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~--------------~~--ra-~~gg~~yl~-~~~W---w~   69 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----S--------------GL--RA-GEGGYGYLK-EPLW---WA   69 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----h--------------cc--cc-cCCCcchhh-hHHH---HH
Confidence            45556789999999999999999998887666431    0              00  00 111111111 1111   23


Q ss_pred             HHH-HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhh
Q 042257          265 GFV-SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       265 g~~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~  330 (383)
                      |++ ..+|..+.+.+....+++.++++..++.+.+.+++..+++|+++....+||++.++|..+...
T Consensus        70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            666 888888888899999999999999999999999999999999999999999999999876654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.13  E-value=0.018  Score=48.33  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccCCC
Q 042257          270 TAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRNKD  335 (383)
Q Consensus       270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~  335 (383)
                      .+++.|..++++.+++.++.+...+-.+..+++++++++++...+++...+.+.|+++..+..+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            347789999999999999999999999999999999999999999999999999999888765543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.82  E-value=0.4  Score=41.65  Aligned_cols=133  Identities=11%  Similarity=0.126  Sum_probs=93.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHH----------HHHhhhcCCCCCCCHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQGMS--PYVLVAYRMVVATILIAP----------FAFVLERKTRPKMTLPIF   79 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~   79 (383)
                      ....|-++++++..+-|+........- .+..  .-...+.-.+-+.+.+-.          ++.+..|.      ...|
T Consensus       169 t~g~GElLL~lSL~mDGlTg~~Qdrir-a~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh------P~~~  241 (337)
T KOG1580|consen  169 TFGFGELLLILSLAMDGLTGSIQDRIR-ASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH------PYVF  241 (337)
T ss_pred             ccchHHHHHHHHHHhcccchhHHHHHH-HhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc------cHHH
Confidence            345688899999888888888776542 2222  222222222333333322          22222221      2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           80 AKIALVSLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        80 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .-+..+++.+ ++++.+.|.-..+-+|-.-+++..+--.|+.+.++++++.+++.+|      |+|..+.+.|...=..
T Consensus       242 ~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  242 WDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHhh
Confidence            5566777777 8889999999999888888999999999999999999999999999      9999999999877443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=92.83  E-value=0.69  Score=41.90  Aligned_cols=124  Identities=12%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhc-CCCccceeccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Q 042257          210 QAFLLKSYPAELSLTALICFMSSVEGTILTLAIER-GNTGIWLLHFDAKLLAVIYGGFVSCTAYFIMGWLMKRRGPVFVS  288 (383)
Q Consensus       210 ~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~~s  288 (383)
                      .+...++.+-|+..+.....+-.......-...+. .+...-...+......++-.|++++.--.+-++++++++.+..+
T Consensus        35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYT  114 (349)
T KOG1443|consen   35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYT  114 (349)
T ss_pred             hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeee
Confidence            33334445556777777766665555444443332 11111111122234444456666777788889999999999999


Q ss_pred             ecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          289 SFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       289 ~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      +.-+..+++..+++.++-=|++++....=..+|-.|+++..+.+.
T Consensus       115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen  115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            999999999999999999999999988888888899888776543

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=91.43  E-value=2.7  Score=31.60  Aligned_cols=112  Identities=13%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Q 042257           17 YLGVIFMQFCYSIMSVIAKLALNQGMSP------YVLVAYRMVVATILIAPFAFVLERKTRPKMTLPIFAKIALVSLFEP   90 (383)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (383)
                      ..-++...++||..+.+.|.. +.+++.      ....++|-.-...                ..++.+.    .-.++ 
T Consensus         5 ~~~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~i----PFllN-   62 (125)
T KOG4831|consen    5 MDKLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMKTLF----------------LNWEYLI----PFLLN-   62 (125)
T ss_pred             HHHHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHHHHH----------------HhHHHHH----HHHHH-
Confidence            345778889999999999987 344332      2222222221111                1223222    22223 


Q ss_pred             HHHHHHHHhhccccchhhHHHhh-hhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHH
Q 042257           91 VISQNLYYTGMKYTTATFTVAMC-NILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCM  156 (383)
Q Consensus        91 ~~~~~~~~~al~~~~~~~a~~l~-~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li  156 (383)
                      --+..+||.-+.+.+.+.+..+. ++.-.|+.+.+..+ +|+...+.     .++|..+..+|+.+.
T Consensus        63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhe
Confidence            23467888999999999998886 66777888887776 55554443     388888888887664

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=91.13  E-value=0.18  Score=45.48  Aligned_cols=132  Identities=12%  Similarity=0.069  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH-HhhhcCC------Cc---cceeccchhHHHHHHHHH
Q 042257          197 AAGCFAWSCFIILQAFLLKSYPAELSLTALICFMSSVEGTILT-LAIERGN------TG---IWLLHFDAKLLAVIYGGF  266 (383)
Q Consensus       197 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~------~~---~~~~~~~~~~~~~~~~g~  266 (383)
                      +++.+||+..-...|-..++...| ..++|-..++.++...+. +-.+..+      ..   .....+...+...+.-|+
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv   80 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV   80 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence            456778887777777665544322 234444444444333332 2222101      11   111122223444455566


Q ss_pred             HHHHHHHHHHHHHhccCccceeecch-hHHHHHHHHHHHHhccccc--chhhhhHHHHHHHHHHhhh
Q 042257          267 VSCTAYFIMGWLMKRRGPVFVSSFNP-LGMVIIAVLGSFFLAEKLY--LGRIIGAVIIVIGLYMVLW  330 (383)
Q Consensus       267 ~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~l~~~~~~~e~~~--~~~~~G~~li~~gv~l~~~  330 (383)
                      +--+++.+..+++...+.+..-++.. +..++++++.++ ++.+.+  ...+.|.+++++++++-..
T Consensus        81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence            67888999999999988766555543 455666777763 445544  3567788888888876554

Transport is dependent on glucose and a proton gradient [].

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.71  E-value=0.85  Score=40.67  Aligned_cols=142  Identities=18%  Similarity=0.129  Sum_probs=102.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC-CCHHHHHHHHHH
Q 042257           12 HNAKPYLGVIFMQFCYSIMSVIAKLALNQ-GMSPYVLVAYRMVVATILIAPFAFVLERKT----RPK-MTLPIFAKIALV   85 (383)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~   85 (383)
                      -...|.++.+.+.+.-++..+..|..+.. +-.-+.++++..+.+.++++|.....+.-.    .+. ...+.|..+.+.
T Consensus       182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs  261 (347)
T KOG1442|consen  182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS  261 (347)
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence            35689999999999999999999965422 234678899999999999999988754321    122 356778888888


Q ss_pred             HHHHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           86 SLFEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      |+++...++. ..+=++.++|-...+=...-...=.++++.+++|..+...      |-+-++.+.|...-++-+
T Consensus       262 glfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  262 GLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             HHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHH
Confidence            8888444433 3445566665554443444455557789999999999887      888888888888766544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.25  E-value=3.7  Score=36.71  Aligned_cols=140  Identities=10%  Similarity=0.070  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCCHHHHHHHHHHHH
Q 042257           14 AKPYLGVIFMQFCYSIMSVIAKLAL-NQGMSPYVLVAYRMVVATILIAPFAFVLERKTR-----PKMTLPIFAKIALVSL   87 (383)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~   87 (383)
                      ..|+.+.-.+.++=+...-+....+ ...-+..+.+++.+.++.++++..+...+.-..     ...+++...+.++.+.
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~  268 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL  268 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence            4577666666666666555554443 234567888999999999988877766543221     1245666666777666


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhhc
Q 042257           88 FEPVISQNLYYTGMKYTTATFTVAMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLLK  160 (383)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~  160 (383)
                      .+ .++......-++.-++..++.+...--..+.+++++++.++++...      ..+..+...|+++=...+
T Consensus       269 ~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  269 AG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             Hh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcccC
Confidence            66 5555555555566788888888888888999999999999999887      888899999999876544

>PRK02237 hypothetical protein; Provisional

Probab=88.91  E-value=2  Score=32.51  Aligned_cols=48  Identities=10%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             ceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          286 FVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       286 ~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      ..+...-.-.+.++++++.+-|++|+...++|.++.++|+.++.+..+
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            455666777889999999999999999999999999999988776553

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=87.09  E-value=1.2  Score=33.59  Aligned_cols=47  Identities=17%  Similarity=0.245  Sum_probs=39.8

Q ss_pred             eeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhccC
Q 042257          287 VSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGRN  333 (383)
Q Consensus       287 ~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~  333 (383)
                      .+...-.-.+.++++++.+-+++|+...++|.++.+.|+.++.+.++
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            44555566788999999999999999999999999999988876554

; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=86.57  E-value=0.86  Score=40.79  Aligned_cols=67  Identities=10%  Similarity=0.157  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhc
Q 042257          265 GFVSCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWG  331 (383)
Q Consensus       265 g~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~  331 (383)
                      +++-..+..+.+.++..++++...++.-...+++-+++.-+++..++..+|+|+..+.+|+..+...
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            4566677788889999999999999999999999999999999999999999999999999876654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=83.99  E-value=0.14  Score=45.00  Aligned_cols=136  Identities=20%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHhhhcCCCccceeccchhHHHHHHHHHH
Q 042257          189 LTKGALLIAAGCFAWSCFIILQAFLLKS-YPAELSLTALICFMSSVEGTILTLAIERGNTGIWLLHFDAKLLAVIYGGFV  267 (383)
Q Consensus       189 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  267 (383)
                      ...|..++=.=++|-......+..+.++ .+.|...++.....-+++-.+...+-..    .+    ...|..-+.++++
T Consensus        16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~----~~~~~hYilla~~   87 (336)
T KOG2766|consen   16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YI----KAKWRHYILLAFV   87 (336)
T ss_pred             hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HH----HHHHHHhhheeEE
Confidence            3444444444344444444444555554 4456777777666666666666654221    11    1134445555667


Q ss_pred             HHHHHHHHHHHHhccCccceeecchhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSFNPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      -.=++++...|.++++-+.+..+..-..+...+++|++++.+-...++.|..+.+.|+.+.....
T Consensus        88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD  152 (336)
T KOG2766|consen   88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD  152 (336)
T ss_pred             eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence            77778888899999999999999999999999999999999999999999999999998877544

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.51  E-value=3.5  Score=31.01  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhccCccceeecc-hhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHh
Q 042257          268 SCTAYFIMGWLMKRRGPVFVSSFN-PLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMV  328 (383)
Q Consensus       268 ~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~  328 (383)
                      ..++..+|+..+.+.+-+.+.++. ++...++.+.+..+-.|......+.|..++++|+.+.
T Consensus        62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            667778888899999988766665 4688889999985444446778999999999998764

>PRK02237 hypothetical protein; Provisional

Probab=82.82  E-value=18  Score=27.50  Aligned_cols=47  Identities=13%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             hhhHH-HhhhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257          106 ATFTV-AMCNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus       106 ~~~a~-~l~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      .+.+. .--....+...+..+.+-++|++..+      ++|..++++|+.++.+
T Consensus        58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~  105 (109)
T PRK02237         58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY  105 (109)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence            44443 33356666677888999999999999      9999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 58/370 (15%), Positives = 99/370 (26%), Gaps = 119/370 (32%)

Query: 70  TRPKMTLPIFAKIALVSLFEPVISQNLYYTGM----KYTTATFTVAMCNILPALTFLMAW 125
           +R +  L +  + AL+ L  P  ++N+   G+    K   A        +   + F + W
Sbjct: 132 SRLQPYLKL--RQALLEL-RP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 126 IFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL----------LKGPILKFPWKQVRLLH 175
           +       +K+ +S   +L  +      +   +               L+    Q  L  
Sbjct: 187 L------NLKNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 176 NQLETGIQNNEEDLTKGALLIAAG-CFAWSCFIILQAFLLKSYPAELSLTALICFMSSVE 234
                  +N         LL+      A        AF L      L  T        + 
Sbjct: 237 LLKSKPYEN--------CLLVLLNVQNAK----AWNAFNLSC--KILLTTRFKQVTDFLS 282

Query: 235 GTILT-LAIERGNTGIWLLHFDAK-LLAVIYGGFVSCTAYFIMGWLMKRRG--PVFVSSF 290
               T ++++  +    L   + K LL                 +L  R    P  V + 
Sbjct: 283 AATTTHISLDHHSMT--LTPDEVKSLLL---------------KYLDCRPQDLPREVLTT 325

Query: 291 NPLGMVIIAVLGSFFLA----------EKLYLGRIIGA---------------------- 318
           NP  + IIA      LA          +K  L  II +                      
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 319 -VIIVIGLYMVLWGRNKDRSP--------SKS----DNNEVTQ--PDQQMAIKSNMTNEV 363
              I   L  ++W                  S       E T   P   + +K  + NE 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE- 442

Query: 364 TPPDQQMDRR 373
                 + R 
Sbjct: 443 ----YALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.0
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.71
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.67
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.6

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.00  E-value=4.5e-10  Score=89.21  Aligned_cols=69  Identities=20%  Similarity=0.434  Sum_probs=52.8

Q ss_pred             HHHH-HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          264 GGFV-SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       264 ~g~~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      ++++ ++++++++.+++++.+++.+.++ ..+.|++++++++++++|++++.+++|+++|++|+++....+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4556 99999999999999999999998 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.71  E-value=2.1e-07  Score=71.19  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHh
Q 042257           84 LVSLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTL  158 (383)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~  158 (383)
                      +.+++...+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..+      ++|+.+.+.|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            45666668899999999999999999998 799999999999999999999998      9999999999999874

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.67  E-value=6.4e-08  Score=76.77  Aligned_cols=70  Identities=19%  Similarity=0.332  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhHHHh-hhhhHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 042257           84 LVSLFEPVISQNLYYTGMKYTTATFTVAM-CNILPALTFLMAWIFRLEKVKIKSTHSQAKILGTIVTAGGAMCMTLL  159 (383)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~  159 (383)
                      +.+++...+++.++.+++++.|++.+..+ .++.|++++++++++++|+++..+      ++|+++.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence            45666778999999999999999999999 799999999999999999999998      99999999999998753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.60  E-value=1.3e-07  Score=72.41  Aligned_cols=69  Identities=20%  Similarity=0.434  Sum_probs=63.1

Q ss_pred             HHHH-HHHHHHHHHHHHhccCccceeec-chhHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHhhhcc
Q 042257          264 GGFV-SCTAYFIMGWLMKRRGPVFVSSF-NPLGMVIIAVLGSFFLAEKLYLGRIIGAVIIVIGLYMVLWGR  332 (383)
Q Consensus       264 ~g~~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~  332 (383)
                      .+++ .+++++++.+++|+.+.+.+.++ ..+.|+++.++++++++|+++..+++|+++|++|+++....+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3455 88999999999999999999888 899999999999999999999999999999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00