Citrus Sinensis ID: 042260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT
Secondary Structure (PSIPRED)
ccccccEEEEccccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccc
Coil and Loop (DISEMBL)
MAQPSVILATASYDKTIKFweaksgrcyrtiqypdsqvnrleitpnkhylaaagnphirlfdvnssspqpvmsydqhtnNVMAVGFqcdgnwmysgsedgtvkiwdlrapvcqmeyesraavntvvlhpnqtelisgdqngnirvwdltanscscelglqYGLRTFLFYHQDMT
Flexible Loop (DISEMBL)
maqpsvilatasydktikfweaksgrcyrTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTelisgdqngNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT
Low Complexity Region (SEG)
MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT
Disordered region (IsUnstruct)
*****VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV*********SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYH****
Disordered Region (DISOPRED)
MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD**
Disordered Region (DISEMBL)
MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT
Disordered Region (DISPRO)
****SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q54D08	304	Protein LST8 homolog OS=D	yes	no	0.839	0.480	0.668	8e-58
O74184	314	WD repeat-containing prot	yes	no	0.890	0.493	0.587	5e-54
P41318	303	Target of rapamycin compl	yes	no	0.798	0.458	0.555	3e-47
Q9DCJ1	326	Target of rapamycin compl	yes	no	0.839	0.447	0.554	1e-44
Q17QU5	326	Target of rapamycin compl	yes	no	0.839	0.447	0.560	2e-44
Q9BVC4	326	Target of rapamycin compl	yes	no	0.839	0.447	0.547	3e-44
Q5I0B4	326	Target of rapamycin compl	yes	no	0.839	0.447	0.540	7e-44
Q6PA72	326	Target of rapamycin compl	N/A	no	0.839	0.447	0.540	8e-44
Q9Z2K5	326	Target of rapamycin compl	yes	no	0.839	0.447	0.540	1e-43
Q803V5	326	Target of rapamycin compl	yes	no	0.839	0.447	0.540	2e-43

>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1

 Score =  222 bits (566), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 122/154 (79%)

Query: 4   PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
           P +ILATASYD TIKFW+  SG CYR+I   +  +NRLEIT +K Y+AAAGNP  RLF+V
Sbjct: 2   PGIILATASYDHTIKFWDPPSGGCYRSIDCGEFHINRLEITHDKLYIAAAGNPQTRLFEV 61

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN 123
           N+++  P MS+D H  NV  VGFQ +G WMY+GSEDGTVKIWDL+AP CQ +YE  A VN
Sbjct: 62  NTNNNSPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDGTVKIWDLKAPGCQRDYECSAPVN 121

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           TVVLHPNQ ELISGDQNG+IRVWDL +N+CS EL
Sbjct: 122 TVVLHPNQAELISGDQNGSIRVWDLISNTCSREL 155

Plays a role in regulation of adenylate cyclase and protein kinase B (PKB) activation during aggregation. Involved in both chemotaxis and signal relay.
Dictyostelium discoideum (taxid: 44689)

>sp|O74184|WAT1_SCHPO WD repeat-containing protein wat1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wat1 PE=1 SV=1

 Score =  210 bits (534), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 122/155 (78%)

Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD 62
           Q SV+L ++ YD TI+FWEA SG C RTIQ+ DSQVNRL I+P+K +LAAAGNPH+RL+D
Sbjct: 8   QHSVLLVSSGYDHTIRFWEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYD 67

Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
           +N+SS  P+M+++ HTNNV A+ F CDG W+ + SEDGTVK+WD+RAP  Q  Y+ ++ V
Sbjct: 68  INTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPV 127

Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           N +++HPNQ EL+S DQ+G +R WDL  NSC+ EL
Sbjct: 128 NDLLIHPNQGELLSCDQSGRVRAWDLGENSCTHEL 162

May play a role in mRNA maturation as a coupling protein between splicing and synthesis and/or stabilization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1 SV=1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 113/153 (73%)

Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64
           SVIL +A YD TI+FWEA +G C RTIQ+ DSQVNRLEIT +K  LA AG+ ++RL+D+ 
Sbjct: 2   SVILVSAGYDHTIRFWEALTGVCSRTIQHSDSQVNRLEITNDKKLLATAGHQNVRLYDIR 61

Query: 65  SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT 124
           +++P PV S++ H  NV +V FQ D  WM + SEDGT+K+WD+R+P     Y+  A VN 
Sbjct: 62  TTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRNYKHNAPVNE 121

Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           VV+HPNQ ELIS D++GNIR+WDL  N C+ +L
Sbjct: 122 VVIHPNQGELISCDRDGNIRIWDLGENQCTHQL 154

Essential component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. LST8 is involved in the negative regulation of transcription factors GLN3 and RTG1-RTG3, limiting the synthesis of alpha-ketoglutarate, glutamate and glutamine. LST8 is required for targeting of amino acid permeases (AAPs) to the plasma membrane. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway. LST8 is involved in maintenance of cell wall integrity. LST8 modulates TOR2 kinase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9DCJ1|LST8_MOUSE Target of rapamycin complex subunit LST8 OS=Mus musculus GN=Mlst8 PE=1 SV=1

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P P++SYD  + N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVCLHPNQAELIVGDQSGAIHIWDLKTD 160

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Mus musculus (taxid: 10090)

>sp|Q17QU5|LST8_BOVIN Target of rapamycin complex subunit LST8 OS=Bos taurus GN=MLST8 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRTMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P P++SYD    NV +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPIISYDGVNKNVASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVCLHPNQAELIVGDQSGAIHIWDLKTD 160

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Bos taurus (taxid: 9913)

>sp|Q9BVC4|LST8_HUMAN Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P P++SYD    N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVCLHPNQAELIVGDQSGAIHIWDLKTD 160

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Homo sapiens (taxid: 9606)

>sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis GN=mlst8 PE=2 SV=1

 Score =  176 bits (446), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVFLHPNQAELIVGDQSGAIHIWDLKTD 160

Xenopus tropicalis (taxid: 8364)

>sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8 PE=2 SV=1

 Score =  176 bits (445), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVFLHPNQAELIVGDQSGAIHIWDLKTD 160

Xenopus laevis (taxid: 8355)

>sp|Q9Z2K5|LST8_RAT Target of rapamycin complex subunit LST8 OS=Rattus norvegicus GN=Mlst8 PE=1 SV=2

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AA G  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAATGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P P++SYD  + N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G   +WDL  +
Sbjct: 133 CVCLHPNQAELIVGDQSGTSHIWDLKTD 160

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-421'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Rattus norvegicus (taxid: 10116)

>sp|Q803V5|LST8_DANRE Target of rapamycin complex subunit lst8 OS=Danio rerio GN=mlst8 PE=2 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)

Query: 6   VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
           VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct: 13  VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNSLEVTPDRSMIAAAGYQHIRMYDLNS 72

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
           ++P PV++YD  + N+ +VGF  DG WMY+G ED   +IWDLR+    CQ  ++  A +N
Sbjct: 73  NNPNPVINYDGVSKNITSVGFHEDGRWMYTGGEDCMARIWDLRSRNLQCQRIFQVNAPIN 132

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTAN 151
            V LHPNQ ELI GDQ+G I +WDL  +
Sbjct: 133 CVCLHPNQAELIVGDQSGVIHIWDLKTD 160

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
356549184	316	PREDICTED: protein LST8 homolog [Glycine	0.902	0.496	0.936	2e-84
388495860	316	unknown [Lotus japonicus]	0.902	0.496	0.929	1e-83
363808362	316	uncharacterized protein LOC100781599 [Gl	0.902	0.496	0.929	2e-83
449437615	316	PREDICTED: protein LST8 homolog [Cucumis	0.902	0.496	0.923	2e-83
217072718	314	unknown [Medicago truncatula]	0.902	0.5	0.929	3e-83
388508166	158	unknown [Lotus japonicus]	0.902	0.993	0.923	5e-83
388522047	316	unknown [Lotus japonicus]	0.902	0.496	0.923	3e-82
224137986	316	predicted protein [Populus trichocarpa]	0.902	0.496	0.923	3e-82
255565297	317	WD-repeat protein, putative [Ricinus com	0.890	0.488	0.929	2e-81
414591672	261	TPA: hypothetical protein ZEAMMB73_99309	0.902	0.601	0.891	6e-80

>gi|356549184|ref|XP_003542977.1| PREDICTED: protein LST8 homolog [Glycine max]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/157 (93%), Positives = 153/157 (97%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QP+VILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+KH+LAAAGNPHIRL
Sbjct: 1   MSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKHFLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FDVNS+SPQPVMSYD HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495860|gb|AFK35996.1| unknown [Lotus japonicus]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 152/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QP+VILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHIRL
Sbjct: 1   MSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FD+NSSSPQPVMSYD HT+NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDINSSSPQPVMSYDSHTSNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808362|ref|NP_001241999.1| uncharacterized protein LOC100781599 [Glycine max] gi|255638977|gb|ACU19789.1| unknown [Glycine max]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 152/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QP+VILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K +LAAAGNPHIRL
Sbjct: 1   MSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRFLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FDVNS+SPQPVMSYD HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437615|ref|XP_004136587.1| PREDICTED: protein LST8 homolog [Cucumis sativus] gi|449520736|ref|XP_004167389.1| PREDICTED: protein LST8 homolog [Cucumis sativus]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/157 (92%), Positives = 151/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M QPSVILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHIRL
Sbjct: 1   MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FD+NS+SPQP+MSYD HTNNVM+VGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDINSNSPQPIMSYDSHTNNVMSVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072718|gb|ACJ84719.1| unknown [Medicago truncatula]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 152/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QPSV+LATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHIRL
Sbjct: 16  MSQPSVLLATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRL 75

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FDVNS+SPQPVMSYD HT+NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 76  FDVNSNSPQPVMSYDGHTSNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 135

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 136 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508166|gb|AFK42149.1| unknown [Lotus japonicus]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/157 (92%), Positives = 151/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QP+VILATA YD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHIRL
Sbjct: 1   MSQPTVILATAGYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FD+NSSSPQPVMSYD HT+NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDINSSSPQPVMSYDSHTSNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522047|gb|AFK49085.1| unknown [Lotus japonicus]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/157 (92%), Positives = 151/157 (96%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M+QP+VILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHIRL
Sbjct: 1   MSQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FD+NSSSPQPVMSYD HT+NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDINSSSPQPVMSYDSHTSNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANS SCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSRSCEL 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137986|ref|XP_002322701.1| predicted protein [Populus trichocarpa] gi|222867331|gb|EEF04462.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/157 (92%), Positives = 149/157 (94%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           M QPSVILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K YLAAAGNPHI+L
Sbjct: 1   MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIKL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FDVNS+SP PVMSYD HT NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRA
Sbjct: 61  FDVNSNSPHPVMSYDSHTANVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565297|ref|XP_002523640.1| WD-repeat protein, putative [Ricinus communis] gi|223537092|gb|EEF38726.1| WD-repeat protein, putative [Ricinus communis]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 148/155 (95%)

Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD 62
           QPSVILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEI P+K +LAAAGNPHIRLFD
Sbjct: 4   QPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEINPDKRFLAAAGNPHIRLFD 63

Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
           VNS+SPQPV SYD HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP CQ EYESRAAV
Sbjct: 64  VNSNSPQPVRSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAV 123

Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL
Sbjct: 124 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414591672|tpg|DAA42243.1| TPA: hypothetical protein ZEAMMB73_993099 [Zea mays]

 Score =  301 bits (771), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 147/157 (93%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           MAQPSVILATASYD TI+FWEAKSGRCYRTIQYPDSQVNRLEITP+K +LAAAGNPHIRL
Sbjct: 1   MAQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRFLAAAGNPHIRL 60

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           FDVNS+SPQPV+SYD HT+NVMAVGF CDGNWMYSGSEDGTV+IWDLR   CQ EYESRA
Sbjct: 61  FDVNSNSPQPVISYDSHTSNVMAVGFHCDGNWMYSGSEDGTVRIWDLRTGTCQREYESRA 120

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           AVNTVVLHPNQ ELISGDQNGNIRVWDL ANSCSCEL
Sbjct: 121 AVNTVVLHPNQKELISGDQNGNIRVWDLAANSCSCEL 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2092722	305	LST8-1 "AT3G18140" [Arabidopsi	0.902	0.514	0.891	2.1e-75
DICTYBASE|DDB_G0292592	304	lst8 "WD40 repeat-containing p	0.885	0.506	0.668	2.6e-54
POMBASE|SPBC21B10.05c	314	pop3 "WD repeat protein Pop3"	0.890	0.493	0.587	1.7e-50
ASPGD|ASPL0000057386	393	AN1335 [Emericella nidulans (t	0.879	0.389	0.594	3.7e-48
UNIPROTKB|G4MUL1	317	MGG_07284 "Target-rapamycin co	0.879	0.482	0.549	1.2e-44
SGD|S000004951	303	LST8 "Protein required for the	0.879	0.504	0.555	1.5e-44
MGI|MGI:1929514	326	Mlst8 "MTOR associated protein	0.821	0.438	0.565	7.3e-43
UNIPROTKB|Q17QU5	326	MLST8 "Target of rapamycin com	0.821	0.438	0.572	9.3e-43
UNIPROTKB|H3BN58	202	MLST8 "Target of rapamycin com	0.821	0.707	0.558	1.2e-42
UNIPROTKB|Q9BVC4	326	MLST8 "Target of rapamycin com	0.821	0.438	0.558	1.2e-42

TAIR|locus:2092722 LST8-1 "AT3G18140" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 140/157 (89%), Positives = 147/157 (93%)

Query:     1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
             M+QPSVILATASYD TI+FWEA++GRCYRTIQYPDS VNRLEITP+KHYLAAA NPHIRL
Sbjct:     1 MSQPSVILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRL 60

Query:    61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
             FDVNS+SPQPVM+YD HTNNVMAVGFQCD  WMYSGSEDGTVKIWDLRAP CQ EYES A
Sbjct:    61 FDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVA 120

Query:   121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             AVNTVVLHPNQTELISGDQNGNIRVWDL ANSCSCEL
Sbjct:   121 AVNTVVLHPNQTELISGDQNGNIRVWDLRANSCSCEL 157

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005768 "endosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048571 "long-day photoperiodism" evidence=IMP

GO:1900088 "regulation of inositol biosynthetic process" evidence=IMP

GO:1900091 "regulation of raffinose biosynthetic process" evidence=IMP

DICTYBASE|DDB_G0292592 lst8 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 103/154 (66%), Positives = 122/154 (79%)

Query:     4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
             P +ILATASYD TIKFW+  SG CYR+I   +  +NRLEIT +K Y+AAAGNP  RLF+V
Sbjct:     2 PGIILATASYDHTIKFWDPPSGGCYRSIDCGEFHINRLEITHDKLYIAAAGNPQTRLFEV 61

Query:    64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN 123
             N+++  P MS+D H  NV  VGFQ +G WMY+GSEDGTVKIWDL+AP CQ +YE  A VN
Sbjct:    62 NTNNNSPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDGTVKIWDLKAPGCQRDYECSAPVN 121

Query:   124 TVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             TVVLHPNQ ELISGDQNG+IRVWDL +N+CS EL
Sbjct:   122 TVVLHPNQAELISGDQNGSIRVWDLISNTCSREL 155

GO:0043520 "regulation of myosin II filament assembly" evidence=IMP

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0032148 "activation of protein kinase B activity" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IDA

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030838 "positive regulation of actin filament polymerization" evidence=IMP

GO:0007190 "activation of adenylate cyclase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006935 "chemotaxis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC21B10.05c pop3 "WD repeat protein Pop3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 91/155 (58%), Positives = 122/155 (78%)

Query:     3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD 62
             Q SV+L ++ YD TI+FWEA SG C RTIQ+ DSQVNRL I+P+K +LAAAGNPH+RL+D
Sbjct:     8 QHSVLLVSSGYDHTIRFWEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYD 67

Query:    63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
             +N+SS  P+M+++ HTNNV A+ F CDG W+ + SEDGTVK+WD+RAP  Q  Y+ ++ V
Sbjct:    68 INTSSQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPV 127

Query:   123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             N +++HPNQ EL+S DQ+G +R WDL  NSC+ EL
Sbjct:   128 NDLLIHPNQGELLSCDQSGRVRAWDLGENSCTHEL 162

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=TAS

GO:0031931 "TORC1 complex" evidence=IDA

GO:0031932 "TORC2 complex" evidence=IDA

ASPGD|ASPL0000057386 AN1335 [Emericella nidulans (taxid:162425)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 91/153 (59%), Positives = 116/153 (75%)

Query:     5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64
             SVIL TA YD TI+FWEA SG C RTIQ+PDSQVNRL ITP+K YLAAAG+ +++L+D+ 
Sbjct:     2 SVILCTAGYDHTIRFWEALSGICSRTIQHPDSQVNRLCITPDKRYLAAAGHNNVKLYDIK 61

Query:    65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT 124
             S++P PVM+++ HTNN+  V F C+G WM + SEDGTVK+WD R    Q  Y  +A VN 
Sbjct:    62 STNPNPVMTFEGHTNNITGVAFHCEGKWMVTSSEDGTVKVWDTRTGSLQRNYAHKAPVND 121

Query:   125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             VV+HPNQ ELISGD+ G +RVWDL  + C+ +L
Sbjct:   122 VVIHPNQGELISGDRAGIVRVWDLGESVCTHQL 154

GO:0006397 "mRNA processing" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031931 "TORC1 complex" evidence=IEA

GO:0031932 "TORC2 complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4MUL1 MGG_07284 "Target-rapamycin complex subunit LST8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 84/153 (54%), Positives = 112/153 (73%)

Query:     5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64
             SVIL TA YD TI+FWEA SG C RTIQ+PDSQVNRL I+P+K +LAAAG+  ++L+D+ 
Sbjct:     2 SVILCTAGYDHTIRFWEALSGICSRTIQHPDSQVNRLCISPDKRFLAAAGHHTVKLYDIK 61

Query:    65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT 124
             S++P  +++++ HT NV  V F C+G WM + SEDGTVKIW+ R    Q  Y  ++ VN 
Sbjct:    62 STNPNALLTFEGHTGNVTGVAFHCEGKWMVTSSEDGTVKIWETRTGTIQRSYNHQSPVND 121

Query:   125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             VV+HPNQ E+IS D+ G IR+WDL  N C+ E+
Sbjct:   122 VVIHPNQGEIISCDRAGTIRLWDLADNKCTSEM 154

GO:0000139 "Golgi membrane" evidence=ISS

GO:0001558 "regulation of cell growth" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010008 "endosome membrane" evidence=ISS

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031505 "fungal-type cell wall organization" evidence=ISS

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=ISS

GO:0031931 "TORC1 complex" evidence=ISS

GO:0031932 "TORC2 complex" evidence=ISS

GO:0045860 "positive regulation of protein kinase activity" evidence=ISS

SGD|S000004951 LST8 "Protein required for the transport of Gap1p to the cell surface" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 85/153 (55%), Positives = 113/153 (73%)

Query:     5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64
             SVIL +A YD TI+FWEA +G C RTIQ+ DSQVNRLEIT +K  LA AG+ ++RL+D+ 
Sbjct:     2 SVILVSAGYDHTIRFWEALTGVCSRTIQHSDSQVNRLEITNDKKLLATAGHQNVRLYDIR 61

Query:    65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT 124
             +++P PV S++ H  NV +V FQ D  WM + SEDGT+K+WD+R+P     Y+  A VN 
Sbjct:    62 TTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRNYKHNAPVNE 121

Query:   125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
             VV+HPNQ ELIS D++GNIR+WDL  N C+ +L
Sbjct:   122 VVIHPNQGELISCDRDGNIRIWDLGENQCTHQL 154

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IMP

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=IC;IMP

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IPI

GO:0031931 "TORC1 complex" evidence=IPI

GO:0006810 "transport" evidence=IMP

MGI|MGI:1929514 Mlst8 "MTOR associated protein, LST8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 82/145 (56%), Positives = 108/145 (74%)

Query:     6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
             VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+NS
Sbjct:    13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAAAGYQHIRMYDLNS 72

Query:    66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
             ++P P++SYD  + N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct:    73 NNPNPIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query:   124 TVVLHPNQTELISGDQNGNIRVWDL 148
              V LHPNQ ELI GDQ+G I +WDL
Sbjct:   133 CVCLHPNQAELIVGDQSGAIHIWDL 157

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0030838 "positive regulation of actin filament polymerization" evidence=IMP

GO:0031931 "TORC1 complex" evidence=ISO

GO:0031932 "TORC2 complex" evidence=ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISO

GO:0032314 "regulation of Rac GTPase activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IMP

UNIPROTKB|Q17QU5 MLST8 "Target of rapamycin complex subunit LST8" [Bos taurus (taxid:9913)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 83/145 (57%), Positives = 107/145 (73%)

Query:     6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
             VILATA YD T++FW+A SG C RT+Q+ DSQVN LEITP++  +AAAG  HIR++D+NS
Sbjct:    13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRTMIAAAGYQHIRMYDLNS 72

Query:    66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
             ++P P++SYD    NV +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct:    73 NNPNPIISYDGVNKNVASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query:   124 TVVLHPNQTELISGDQNGNIRVWDL 148
              V LHPNQ ELI GDQ+G I +WDL
Sbjct:   133 CVCLHPNQAELIVGDQSGAIHIWDL 157

GO:0005737 "cytoplasm" evidence=ISS

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|H3BN58 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 81/145 (55%), Positives = 107/145 (73%)

Query:     6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
             VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct:    13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNS 72

Query:    66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
             ++P P++SYD    N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct:    73 NNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query:   124 TVVLHPNQTELISGDQNGNIRVWDL 148
              V LHPNQ ELI GDQ+G I +WDL
Sbjct:   133 CVCLHPNQAELIVGDQSGAIHIWDL 157

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

UNIPROTKB|Q9BVC4 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 81/145 (55%), Positives = 107/145 (73%)

Query:     6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
             VILATA YD T++FW+A SG C RT+Q+ DSQVN LE+TP++  +AAAG  HIR++D+NS
Sbjct:    13 VILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNS 72

Query:    66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVN 123
             ++P P++SYD    N+ +VGF  DG WMY+G ED T +IWDLR+    CQ  ++  A +N
Sbjct:    73 NNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPIN 132

Query:   124 TVVLHPNQTELISGDQNGNIRVWDL 148
              V LHPNQ ELI GDQ+G I +WDL
Sbjct:   133 CVCLHPNQAELIVGDQSGAIHIWDL 157

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
smart00320	40	smart00320, WD40, WD40 repeats	7e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-06
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (296), Expect = 9e-33
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNS 65
           IL+++S DKTIK W+ ++G+C  T++     VN +  +P+  ++A++     I+L+D+ +
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNT 124
                V +   HT  V +V F  DG  + S S DGT+K+WDL    C          VN+
Sbjct: 167 GKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           V   P+   L SG ++G IRVWDL    C   L
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  114 bits (288), Expect = 1e-31
 Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNS 65
            +A++S D TIK W+ ++G+C  T+     +VN +  +P+ +  L+++ +  I+L+D+  
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL-- 206

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNT 124
           S+ + + +   H N V +V F  DG  + SGSEDGT+++WDLR   C         +V +
Sbjct: 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 125 VVLHPNQTELISGDQNGNIRVWD 147
           +   P+   L SG  +G IR+WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 3e-29
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNS 65
           +LAT S D TIK W+ ++G   RT++     V  +  + +  YLA+  +   IRL+D+ +
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNT 124
              + V +   HT+ V +V F  DG  + S S D T+K+WD+    C          VN+
Sbjct: 83  --GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140

Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V   P+ T + S  Q+G I++WDL    C
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (267), Expect = 2e-28
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 4/152 (2%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
           LA+ S DKTI+ W+ ++G C RT+    S V+ +  +P+   L+++     I+++DV + 
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET- 124

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTV 125
             + + +   HT+ V +V F  DG ++ S S+DGT+K+WDLR   C          VN+V
Sbjct: 125 -GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
              P+  +L+S   +G I++WDL+   C   L
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 9e-21
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 7   ILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVN 64
           +LA+ S D TI+ W+ +S     RT+    S V  +  +P+   LA+  +   +RL+D+ 
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 65  SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSG-SEDGTVKIWDLRAPVCQMEYESRAAVN 123
           +      ++   H   V ++ F  DG+ + SG S+DGT+++WDLR        E  + V 
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158
           +V   P+   + SG  +G +R+WDL+  S    L 
Sbjct: 375 SVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.1 bits (209), Expect = 7e-20
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
            +++A+ S D TI+ W+  +G+  R+     S       +P+   LA+   +  IRL+D+
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL 270

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME---YESRA 120
            SSS   + +   H+++V++V F  DG  + SGS DGTV++WDL                
Sbjct: 271 RSSS-SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 121 AVNTVVLHPN-QTELISGDQNGNIRVWDLTANSC 153
            V+++   P+    +  G  +G IR+WDL     
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.4 bits (202), Expect = 7e-19
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 6/161 (3%)

Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFD 62
            ++ + +S D TIK W+ ++G+   T+      V+ L  +P+   L A+G  +  IRL+D
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--YESRA 120
           +++       +   H+++V++  F  DG+ + SGS DGT+++WDLR+    +       +
Sbjct: 228 LSTGKLLRS-TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
           +V +V   P+   L SG  +G +R+WDL        L L+ 
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 27  CYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85
             RT++     V  +  +P+   LA    +  I+++D+   + + + +   HT  V  V 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVA 58

Query: 86  FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIR 144
              DG ++ SGS D T+++WDL    C        + V++V   P+   L S  ++  I+
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 145 VWDLTANSC 153
           VWD+    C
Sbjct: 119 VWDVETGKC 127

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 9e-18
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 4   PSVILATASYDKTIKFWE-AKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH--IRL 60
            S++LA++S D T+K W+ +  G+  RT++     V  L  +P+   LA+  +    I+L
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRA-PVCQMEYES 118
           +D+ +    P+ +   HT+ V ++ F  DG  +  SGS DGT+++WDL    + +     
Sbjct: 183 WDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154
            +        P+ + L SG  +G IR+WDL ++S  
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.3 bits (168), Expect = 3e-14
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 7   ILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFD 62
           +LA+ S D T++ W+ ++G+     T++  +  V+ L  +P+   L + G  +  IRL+D
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-A 121
           + +  P   +   +  +NV++V F  DG  + SGS DGTV++WDL         +     
Sbjct: 358 LRTGKP---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414

Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDL 148
           V ++   P+   L SG  +  IR+WDL
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 5e-14
 Identities = 44/156 (28%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 7   ILATASYDKTIKFWEAKSGR-CYRTIQ-YPDSQVNRLEI-TPNKHYLAAAGNPH---IRL 60
           +L + S D TIK W+  +G    ++++   DS V++L + +P+ + +  A +     ++L
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP-VCQMEYES 118
           +D+++   + + + + H+ +V ++ F  DG  + SGS  DGT+K+WDLR           
Sbjct: 139 WDLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 119 RAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTANSC 153
              V+++   P+   LI SG  +G IR+WDL+    
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           HT  V  V F  DG  + +GS DGT+K+WDL         +     V  V    + T L 
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 136 SGDQNGNIRVWDLTANSCSCEL 157
           SG  +  IR+WDL    C   L
Sbjct: 68  SGSSDKTIRLWDLETGECVRTL 89

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.8 bits (117), Expect = 7e-09
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
           S + + +   HT  V +V F  DG ++ SGS+DGT+K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 30/107 (28%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLF 61
             S++++  S D TI+ W+ ++G+  +T+    S V  +  +P+   +++      +RL+
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTL-EGHSNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Query: 62  DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
           D+++ S   + + D HT+ V ++ F  DG  + SGS D T+++WDL+
Sbjct: 398 DLSTGSL--LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 69  QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
           + + +   HT  V +V F  DGN + SGS+DGTV++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME----YESRAAVNTVVL 127
           +    H +++ ++ F  DG  + SGS DGT+K+WDL      ++        +     + 
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 128 HPNQTELIS--GDQNGNIRVWDLT 149
            P+   ++      +G +++WDL+
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLS 142

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V +V   P+   L SG  +G I++WD
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 120 AAVNTVVLHPNQTELISGDQNGNIRVWD 147
             V +V   P+   L SG  +G +RVWD
Sbjct: 12  GPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.9
PTZ00421	493	coronin; Provisional	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
PTZ00420	568	coronin; Provisional	99.88
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.88
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.88
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.88
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG0645	312	consensus WD40 repeat protein [General function pr	99.87
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.86
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.85
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.85
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0643	327	consensus Translation initiation factor 3, subunit	99.84
KOG0296	399	consensus Angio-associated migratory cell protein	99.84
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.83
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.83
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.83
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.83
KOG0289	506	consensus mRNA splicing factor [General function p	99.83
KOG0641	350	consensus WD40 repeat protein [General function pr	99.82
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.81
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.81
KOG0296	399	consensus Angio-associated migratory cell protein	99.81
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.81
KOG0645	312	consensus WD40 repeat protein [General function pr	99.81
KOG0267	825	consensus Microtubule severing protein katanin p80	99.81
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.81
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.81
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.8
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.8
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.79
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.78
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.78
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.77
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.77
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.76
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.76
KOG0643	327	consensus Translation initiation factor 3, subunit	99.76
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.76
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.75
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.75
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.75
KOG0641	350	consensus WD40 repeat protein [General function pr	99.75
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.74
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.74
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.74
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.73
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.71
KOG1539	910	consensus WD repeat protein [General function pred	99.71
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.71
KOG0646	476	consensus WD40 repeat protein [General function pr	99.71
KOG1274	933	consensus WD40 repeat protein [General function pr	99.71
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.7
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.7
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.69
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG2048	691	consensus WD40 repeat protein [General function pr	99.68
KOG0639	705	consensus Transducin-like enhancer of split protei	99.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG2096	420	consensus WD40 repeat protein [General function pr	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.66
KOG2048	691	consensus WD40 repeat protein [General function pr	99.66
KOG4328	498	consensus WD40 protein [Function unknown]	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.66
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.66
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.65
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.65
KOG0639	705	consensus Transducin-like enhancer of split protei	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.62
KOG1273	405	consensus WD40 repeat protein [General function pr	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG1274	933	consensus WD40 repeat protein [General function pr	99.6
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.59
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.59
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.59
KOG2096	420	consensus WD40 repeat protein [General function pr	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.58
KOG2055	514	consensus WD40 repeat protein [General function pr	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.56
KOG1539	910	consensus WD repeat protein [General function pred	99.55
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.55
KOG0649	325	consensus WD40 repeat protein [General function pr	99.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.54
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.5
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.5
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.49
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.49
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.49
COG2319	466	FOG: WD40 repeat [General function prediction only	99.47
KOG4328	498	consensus WD40 protein [Function unknown]	99.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.46
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.46
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.44
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.44
KOG2055	514	consensus WD40 repeat protein [General function pr	99.44
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.43
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.41
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.4
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.39
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.38
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.37
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.36
KOG1273	405	consensus WD40 repeat protein [General function pr	99.36
KOG1310	758	consensus WD40 repeat protein [General function pr	99.35
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.35
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG2139	445	consensus WD40 repeat protein [General function pr	99.31
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.29
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.29
KOG4227	609	consensus WD40 repeat protein [General function pr	99.28
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.26
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.26
PRK11028	330	6-phosphogluconolactonase; Provisional	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.26
KOG4227	609	consensus WD40 repeat protein [General function pr	99.26
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.24
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.23
KOG1310	758	consensus WD40 repeat protein [General function pr	99.23
PRK01742	429	tolB translocation protein TolB; Provisional	99.21
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.21
PRK11028	330	6-phosphogluconolactonase; Provisional	99.19
PRK01742	429	tolB translocation protein TolB; Provisional	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.1
KOG2321	703	consensus WD40 repeat protein [General function pr	99.09
KOG1963	792	consensus WD40 repeat protein [General function pr	99.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.06
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.06
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.04
KOG2321	703	consensus WD40 repeat protein [General function pr	99.04
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.04
KOG4547	541	consensus WD40 repeat-containing protein [General	99.03
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.03
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.01
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.0
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.0
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.99
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.98
PRK03629	429	tolB translocation protein TolB; Provisional	98.95
PRK05137	435	tolB translocation protein TolB; Provisional	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
KOG1963	792	consensus WD40 repeat protein [General function pr	98.94
KOG2139	445	consensus WD40 repeat protein [General function pr	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
PRK02889	427	tolB translocation protein TolB; Provisional	98.9
KOG1334	559	consensus WD40 repeat protein [General function pr	98.89
PRK05137	435	tolB translocation protein TolB; Provisional	98.89
PRK04922	433	tolB translocation protein TolB; Provisional	98.89
PRK04922	433	tolB translocation protein TolB; Provisional	98.88
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.88
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.86
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.85
PRK03629	429	tolB translocation protein TolB; Provisional	98.85
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.82
PRK02889	427	tolB translocation protein TolB; Provisional	98.82
KOG1334	559	consensus WD40 repeat protein [General function pr	98.82
KOG2315	566	consensus Predicted translation initiation factor	98.82
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.77
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.69
KOG2695	425	consensus WD40 repeat protein [General function pr	98.68
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.67
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.67
PRK00178	430	tolB translocation protein TolB; Provisional	98.65
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.56
PRK00178	430	tolB translocation protein TolB; Provisional	98.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.5
PRK01029	428	tolB translocation protein TolB; Provisional	98.49
PRK04792	448	tolB translocation protein TolB; Provisional	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.48
PRK04792	448	tolB translocation protein TolB; Provisional	98.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.39
COG4946	668	Uncharacterized protein related to the periplasmic	98.38
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.36
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.18
PRK01029	428	tolB translocation protein TolB; Provisional	98.18
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.16
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.1
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.09
COG4946	668	Uncharacterized protein related to the periplasmic	98.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.03
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.99
PRK04043	419	tolB translocation protein TolB; Provisional	97.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.8
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.74
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.74
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.73
KOG2395	644	consensus Protein involved in vacuole import and d	97.72
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.72
PRK04043	419	tolB translocation protein TolB; Provisional	97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.63
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.57
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.56
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.45
KOG2444	238	consensus WD40 repeat protein [General function pr	97.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.42
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.38
PRK02888	635	nitrous-oxide reductase; Validated	97.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.33
KOG3621	726	consensus WD40 repeat-containing protein [General	97.32
KOG2315	566	consensus Predicted translation initiation factor	97.3
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.27
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.21
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.17
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	97.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.03
KOG2314	698	consensus Translation initiation factor 3, subunit	97.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.9
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.89
COG5167	776	VID27 Protein involved in vacuole import and degra	96.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.76
KOG3621	726	consensus WD40 repeat-containing protein [General	96.75
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.74
PHA02713	557	hypothetical protein; Provisional	96.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.65
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.64
KOG2314	698	consensus Translation initiation factor 3, subunit	96.59
PRK02888	635	nitrous-oxide reductase; Validated	96.58
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.52
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.3
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.29
PHA02713	557	hypothetical protein; Provisional	96.28
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.27
PHA03098	534	kelch-like protein; Provisional	96.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.05
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.9
PHA02790	480	Kelch-like protein; Provisional	95.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.86
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.86
PHA02790	480	Kelch-like protein; Provisional	95.84
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.74
KOG2444	238	consensus WD40 repeat protein [General function pr	95.73
PHA03098	534	kelch-like protein; Provisional	95.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.44
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.27
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.24
PRK13616	591	lipoprotein LpqB; Provisional	95.07
COG3391	381	Uncharacterized conserved protein [Function unknow	95.02
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.83
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.78
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.68
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.55
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.37
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.83
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.71
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.13
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.89
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.72
KOG2395	644	consensus Protein involved in vacuole import and d	91.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.51
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.17
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.99
PRK13616	591	lipoprotein LpqB; Provisional	90.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.6
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.54
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.2
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.06
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.34
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.96
KOG2247	615	consensus WD40 repeat-containing protein [General	88.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.71
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.48
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.43
PLN02153	341	epithiospecifier protein	87.11
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.06
PLN02193	470	nitrile-specifier protein	86.78
COG3391	381	Uncharacterized conserved protein [Function unknow	86.77
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.71
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.45
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.5
PLN02153	341	epithiospecifier protein	85.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.67
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	84.65
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.11
COG5167	776	VID27 Protein involved in vacuole import and degra	83.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.38
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.14
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	82.07
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	81.92

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3e-35  Score=206.83  Aligned_cols=169  Identities=64%  Similarity=1.046  Sum_probs=157.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.-+|+|+|+|-|||+|...+|.|.++++..+++|+.+...|++.++++++...||+||++++++.++.+++.|+++|.+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence            45689999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYG  162 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  162 (174)
                      ++|..+|++++||++||++||||+|.+.+...+.+.++|+++..+|+...|++|.++|.|++||+.+..|.+++- -...
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999874 3334


Q ss_pred             eeEEEEEeec
Q 042260          163 LRTFLFYHQD  172 (174)
Q Consensus       163 ~~~~~~~~~~  172 (174)
                      ..+.+-.|+|
T Consensus       169 ~i~sl~v~~d  178 (311)
T KOG0315|consen  169 SIQSLTVMPD  178 (311)
T ss_pred             ceeeEEEcCC
Confidence            4666666665

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.8e-30  Score=190.26  Aligned_cols=165  Identities=27%  Similarity=0.458  Sum_probs=147.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ...||||+.||++++|++.+...+..+.+|...|..++|+|+|.++.++ -|.+-|+||++++..  .+-..+|...|.+
T Consensus       231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~  308 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFS  308 (459)
T ss_pred             ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccce
Confidence            3469999999999999999989999999999999999999999998764 688899999998743  3445789999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      ++|.++|.+++||+.|..-+|||+|+..++..+. |-.+|.++.|+|+|-.||+||+|+++++||++-.++++.++.+.+
T Consensus       309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n  388 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN  388 (459)
T ss_pred             eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence            9999999999999999999999999999988774 567899999999999999999999999999999999999998877


Q ss_pred             eeEEEEEee
Q 042260          163 LRTFLFYHQ  171 (174)
Q Consensus       163 ~~~~~~~~~  171 (174)
                      +.+-+=|.|
T Consensus       389 lVS~Vk~~p  397 (459)
T KOG0272|consen  389 LVSQVKYSP  397 (459)
T ss_pred             hhhheEecc
Confidence            766555544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-27  Score=169.20  Aligned_cols=164  Identities=22%  Similarity=0.357  Sum_probs=141.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee--cCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD--QHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~--~~~~   79 (174)
                      .++.+.+++|+|+++|+||+.+|+..+.+.+|...|.+++|++++..+++ +-|.+|++|+....   +..+..  .+++
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~  149 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHRE  149 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc---EEEEEecCCCcC
Confidence            46788999999999999999999999999999999999999998876665 56899999998654   233332  2378


Q ss_pred             CEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           80 NVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        80 ~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      -|.++.|+|+  .-.|++++.|++|++||++..+....+ .+...++.++++|+|..+++|+.||.+.+||++.+++.+.
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            8999999997  568999999999999999988766555 4567799999999999999999999999999999999999


Q ss_pred             cCcccceeEEEEE
Q 042260          157 LGLQYGLRTFLFY  169 (174)
Q Consensus       157 ~~~~~~~~~~~~~  169 (174)
                      +++...+.+..|.
T Consensus       230 l~a~~~v~sl~fs  242 (315)
T KOG0279|consen  230 LEAFDIVNSLCFS  242 (315)
T ss_pred             ccCCCeEeeEEec
Confidence            9988888877774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.7e-27  Score=188.68  Aligned_cols=154  Identities=25%  Similarity=0.479  Sum_probs=140.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++..+|+++|.|+++|+|.+.+..++..+++|..+|+.+.|+|.|.+++++ .|++.++|.....  .+...+.+|.+.|
T Consensus       461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~--~PlRifaghlsDV  538 (707)
T KOG0263|consen  461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN--KPLRIFAGHLSDV  538 (707)
T ss_pred             ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC--Cchhhhccccccc
Confidence            467789999999999999999999999999999999999999999988765 6888999998765  5566678999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .|+.|+|+..+++|||.|.+||+||+.++.++..| .|..+|.+++|+|+|.+|++|+.|+.|++||+.+++.+-++.
T Consensus       539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~  616 (707)
T KOG0263|consen  539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK  616 (707)
T ss_pred             ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence            99999999999999999999999999999888877 578999999999999999999999999999999988876663

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.9e-28  Score=181.25  Aligned_cols=158  Identities=22%  Similarity=0.376  Sum_probs=141.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++++|+|++.|.+-++||++++.++.-..+|...|.+++|+++|.++++++ |...|+||++++  .++..+.+|..+|
T Consensus       271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH~k~I  348 (459)
T KOG0272|consen  271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGHIKEI  348 (459)
T ss_pred             CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC--cEEEEecccccce
Confidence            4789999999999999999999999988899999999999999999988765 667899999998  5677888999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      .+++|+|+|..++|||.|++++|||++......++. |..-|..+.|.| .+.+|++++.|++++||.-++.++..++-.
T Consensus       349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence            999999999999999999999999999888877765 456789999999 677899999999999999999988877643


Q ss_pred             ccc
Q 042260          160 QYG  162 (174)
Q Consensus       160 ~~~  162 (174)
                      +-+
T Consensus       429 He~  431 (459)
T KOG0272|consen  429 HEG  431 (459)
T ss_pred             Ccc
Confidence            333

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=3.9e-27  Score=173.24  Aligned_cols=167  Identities=22%  Similarity=0.420  Sum_probs=147.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..++||+.|++++|||+.+|+...++.+|...|..+++++...++. ++.|+.+++||++.+  +.+..|-+|-..|.
T Consensus       162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--kvIR~YhGHlS~V~  239 (460)
T KOG0285|consen  162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--KVIRHYHGHLSGVY  239 (460)
T ss_pred             CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh--hhHHHhccccceeE
Confidence            456899999999999999999999999999988999999999777655 567889999999877  44566789999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +++..|.-..|+||+.|..+|+||+|+...+..+. |..+|.++.+.|....+++|+-|++|++||+++++-...+.+..
T Consensus       240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk  319 (460)
T KOG0285|consen  240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK  319 (460)
T ss_pred             EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence            99999999999999999999999999988887775 78999999999999999999999999999999999888887665


Q ss_pred             ceeEEEEEeec
Q 042260          162 GLRTFLFYHQD  172 (174)
Q Consensus       162 ~~~~~~~~~~~  172 (174)
                      .-.+-+-.||.
T Consensus       320 ksvral~lhP~  330 (460)
T KOG0285|consen  320 KSVRALCLHPK  330 (460)
T ss_pred             ceeeEEecCCc
Confidence            55566666654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=179.96  Aligned_cols=169  Identities=27%  Similarity=0.438  Sum_probs=152.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.-+++||.|..||||+.++++.+..+..|...|.+++.+|...++.++ .|-.||+||++. ++.+..++.+|.--|..
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEE
Confidence            3458999999999999999999999999999999999999998877665 556899999975 57778889999999999


Q ss_pred             EEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           84 VGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        84 ~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ++|+| +.+.|+++|-|++|++|.+.++.+..+++ |...|+++.+-+  +.+++++|+.|.+|++||..+++|++.++.
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            99998 67799999999999999999999988885 567899999986  457999999999999999999999999999


Q ss_pred             ccceeEEEEEeecCC
Q 042260          160 QYGLRTFLFYHQDMT  174 (174)
Q Consensus       160 ~~~~~~~~~~~~~~~  174 (174)
                      +.+...++++||.++
T Consensus       226 Ht~Nvs~v~fhp~lp  240 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELP  240 (794)
T ss_pred             ccccceEEEecCCCc
Confidence            999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=2.7e-25  Score=158.76  Aligned_cols=167  Identities=25%  Similarity=0.382  Sum_probs=137.8

Q ss_pred             CcEEEEEeeCCCcEEEEECC-----CCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            4 PSVILATASYDKTIKFWEAK-----SGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      +..+++++++|.++.+|++.     .|..++.+++|...|..++.++++.+. +++.|+.+|+||+.++  ++...+.+|
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH  104 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGH  104 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEec
Confidence            45689999999999999864     467788999999999999999988765 5568999999999987  445567899


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccC--CCEEEEeeCCCcEEEEeCCCCcc
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPN--QTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ...|++++|+++.+.++||+.|.+|++|++...+.....+.  +.-|+++.|+|+  ...+++++.|++|++||+++.+.
T Consensus       105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            99999999999999999999999999999986554322222  567999999998  67889999999999999999887


Q ss_pred             eeecCcccceeEEEEEeec
Q 042260          154 SCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~  172 (174)
                      ...+..+.+-..++-++||
T Consensus       185 ~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  185 RTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             hhccccccccEEEEEECCC
Confidence            7776655555555544444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=3.6e-25  Score=159.08  Aligned_cols=153  Identities=26%  Similarity=0.488  Sum_probs=123.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC------------------------------------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN------------------------------------   46 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------   46 (174)
                      .+++.|+|+|.||.+.|||.-+.+.++.++.+..-|-.++|+|+                                    
T Consensus        65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH  144 (343)
T KOG0286|consen   65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH  144 (343)
T ss_pred             CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc
Confidence            46788999999999999998766555555444444444444444                                    


Q ss_pred             ------------CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeE
Q 042260           47 ------------KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQ  113 (174)
Q Consensus        47 ------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~  113 (174)
                                  +.++.+++|.+.-+||++++  +....+.+|.+.|.++.+.| +++.|++|+-|+..++||+|.+.++
T Consensus       145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~  222 (343)
T KOG0286|consen  145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV  222 (343)
T ss_pred             cceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence                        44455555666778888776  44556789999999999999 9999999999999999999999998


Q ss_pred             Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          114 MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       114 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+|. |.+.|+++.|+|++.-+++|+.|+++|+||+++.+.+..+
T Consensus       223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY  267 (343)
T ss_pred             EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence            8885 6788999999999999999999999999999997766443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=6.7e-25  Score=173.52  Aligned_cols=154  Identities=25%  Similarity=0.525  Sum_probs=135.3

Q ss_pred             CCcEEEEEeeCCCcEEEEEC-CCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEA-KSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .++.++++++.|+++|+||+ ..+.++.+++.|...|++++|+|.+.++++ +.|+.||+||++++  .+...+..|...
T Consensus       213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--~~~~~l~~hs~~  290 (456)
T KOG0266|consen  213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG--ECVRKLKGHSDG  290 (456)
T ss_pred             CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--eEEEeeeccCCc
Confidence            46779999999999999999 566889999999999999999999876654 57889999999986  566778899999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCe--eEEeecc--cC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV--CQMEYES--RA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~--~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      +.+++|++++..|++++.|+.|++||+.+..  +...+..  .. ++..+.|+|++.++++++.|+.+++||++...+..
T Consensus       291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence            9999999999999999999999999999888  4444422  22 68999999999999999999999999999999887


Q ss_pred             ecC
Q 042260          156 ELG  158 (174)
Q Consensus       156 ~~~  158 (174)
                      ++.
T Consensus       371 ~~~  373 (456)
T KOG0266|consen  371 TYT  373 (456)
T ss_pred             eec
Confidence            764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.94  E-value=6.6e-26  Score=179.72  Aligned_cols=150  Identities=28%  Similarity=0.489  Sum_probs=135.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +-+-++||+|.|++.++|.......++.+.+|-+.|.++.|+|+..+++++ .|.++|+||..++.  .+..+.+|...|
T Consensus       503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V  580 (707)
T KOG0263|consen  503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPV  580 (707)
T ss_pred             CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EEEEecCCCCce
Confidence            346789999999999999999999999999999999999999999988865 68899999999884  466788999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .+++|+|+|+++++|+.||.|++||+..+..+..+ .|...|.++.|+.+++.|++|+.|.+|++||+....+.
T Consensus       581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999999999999999999997766555 56788999999999999999999999999999976655

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=2.5e-24  Score=154.76  Aligned_cols=164  Identities=23%  Similarity=0.348  Sum_probs=144.8

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      -|+|+|.|.+..+||+++|+....+..|...|.++++.| ++..+ .++-|...++||++.+  .....+.+|...|.++
T Consensus       158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSV  235 (343)
T ss_pred             ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccceE
Confidence            377999999999999999999999999999999999999 55544 4556889999999988  5677789999999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .|.|+|.-|+||+.|+++|+||+|..+.+..+.+.   .+|++++|+..|++|++|..|.++.+||.-.++.+..+..+.
T Consensus       236 ~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  236 RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE  315 (343)
T ss_pred             EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence            99999999999999999999999987766666653   579999999999999999999999999999999998887777


Q ss_pred             ceeEEEEEeec
Q 042260          162 GLRTFLFYHQD  172 (174)
Q Consensus       162 ~~~~~~~~~~~  172 (174)
                      +.++-+-..||
T Consensus       316 NRvScl~~s~D  326 (343)
T KOG0286|consen  316 NRVSCLGVSPD  326 (343)
T ss_pred             CeeEEEEECCC
Confidence            77776666654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2e-24  Score=170.79  Aligned_cols=168  Identities=28%  Similarity=0.519  Sum_probs=141.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .++..+++++.|+.+++|+..+++  ..+....|...|.+++|+|++.+++++ .|.++|+||+... ...+.++.+|..
T Consensus       169 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~  247 (456)
T KOG0266|consen  169 PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHST  247 (456)
T ss_pred             CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCC
Confidence            356779999999999999997777  666667788899999999999776654 6789999999433 245677889999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--ceee
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS--CSCE  156 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~  156 (174)
                      .+.+++|+++++++++|+.|++|+|||+++..+...+. |..+|.+++|+++++.|++++.|+.|++||+.++.  |...
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            99999999999999999999999999999988887774 56799999999999999999999999999999999  4444


Q ss_pred             c---CcccceeEEEEEeec
Q 042260          157 L---GLQYGLRTFLFYHQD  172 (174)
Q Consensus       157 ~---~~~~~~~~~~~~~~~  172 (174)
                      +   +.+. ..+++.+||+
T Consensus       328 ~~~~~~~~-~~~~~~fsp~  345 (456)
T KOG0266|consen  328 LSGAENSA-PVTSVQFSPN  345 (456)
T ss_pred             ccCCCCCC-ceeEEEECCC
Confidence            3   2333 5677777764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=151.77  Aligned_cols=155  Identities=24%  Similarity=0.410  Sum_probs=124.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCC--------------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSS--------------   67 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--------------   67 (174)
                      .+++-+.|||.||++||||++.-.+.+.++ +.++|+++..+|+.. ++++-.++.|++||+....              
T Consensus        93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~  171 (311)
T KOG0315|consen   93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ  171 (311)
T ss_pred             ecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence            357889999999999999999877666665 447899999998654 4444567889999985431              


Q ss_pred             ---------------------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeE
Q 042260           68 ---------------------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQ  113 (174)
Q Consensus        68 ---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~  113 (174)
                                                       ..++.+++.|...++.+.++|++++|+|+|.|.+++||+.... +..
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle  251 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE  251 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence                                             1233456678899999999999999999999999999999876 333


Q ss_pred             Eee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          114 MEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       114 ~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ... .+..-+.+++|+.++.+|++|+.|+.+++||+++++.+.++.
T Consensus       252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            333 344568999999999999999999999999999999776653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=160.76  Aligned_cols=158  Identities=23%  Similarity=0.318  Sum_probs=136.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..|+|||.|.|+|+||+.+.....+.+.|..-|.+++|+|+++.++++ .|+.|++||..+++.. -..+.+|...|.
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It  204 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHKKWIT  204 (480)
T ss_pred             CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccCccccee
Confidence            56689999999999999999999999999999999999999999988765 6899999999887533 455789999999


Q ss_pred             EEEEee-----CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           83 AVGFQC-----DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        83 ~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +++|.|     ..+++++++.||.++|||+....++... .|..+|.|+.|-. ...+++|+.|++|++|+...+.+...
T Consensus       205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~  283 (480)
T KOG0271|consen  205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRE  283 (480)
T ss_pred             EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHh
Confidence            999976     5678999999999999999998888766 5678999999842 46789999999999999999988877


Q ss_pred             cCcccce
Q 042260          157 LGLQYGL  163 (174)
Q Consensus       157 ~~~~~~~  163 (174)
                      +..+.+-
T Consensus       284 lkGHahw  290 (480)
T KOG0271|consen  284 LKGHAHW  290 (480)
T ss_pred             hcccchh
Confidence            7544443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=161.45  Aligned_cols=160  Identities=24%  Similarity=0.420  Sum_probs=137.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC---------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP---------------   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---------------   68 (174)
                      +...||++|.||+++|||+..+.++..+..|..+|+++.|-.++.+..++.|++||+|+...+..               
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence            45579999999999999999999999999999999999998877777777899999998653210               


Q ss_pred             --------------------------------------------------------------CCeEEeecCCCCEEEEEE
Q 042260           69 --------------------------------------------------------------QPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        69 --------------------------------------------------------------~~~~~~~~~~~~v~~~~~   86 (174)
                                                                                    +++..+.+|...|..+.|
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f  375 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF  375 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence                                                                          011123467788999999


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccce
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYGL  163 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~  163 (174)
                      +|++++||++|-|..|++||.++++-..+|. |-.+|..++|+.+.+.|++|+.|.++++||+++++..++++ +...+
T Consensus       376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV  454 (480)
T KOG0271|consen  376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV  454 (480)
T ss_pred             CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence            9999999999999999999999998887776 77899999999999999999999999999999999999987 54444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.8e-24  Score=155.63  Aligned_cols=166  Identities=25%  Similarity=0.436  Sum_probs=146.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +..|+|+++|.+|+.|++.+|-++..+..|..-|.-+..+.+|.++++++ |..+++|-..+.+  +...+..|.-.+.+
T Consensus       205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEc  282 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVEC  282 (406)
T ss_pred             CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--hhhhhhccccceEE
Confidence            56799999999999999999999999999988899999999999988764 6689999998873  34445678888888


Q ss_pred             EEEeeC---------------CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           84 VGFQCD---------------GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        84 ~~~~~~---------------~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      ++|-|.               +.++++++.|++|++||+.++.|..++ .|..-|..++|+|.|++|+++..|+++++||
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            888552               348999999999999999999999888 4678899999999999999999999999999


Q ss_pred             CCCCcceeecCcccceeEEEEEeec
Q 042260          148 LTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      +++.+|.-.++++-+....+=+|.+
T Consensus       363 l~~~~cmk~~~ah~hfvt~lDfh~~  387 (406)
T KOG0295|consen  363 LKNLQCMKTLEAHEHFVTSLDFHKT  387 (406)
T ss_pred             eccceeeeccCCCcceeEEEecCCC
Confidence            9999999999988888888877765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.4e-23  Score=146.06  Aligned_cols=168  Identities=23%  Similarity=0.393  Sum_probs=134.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.-+++|+.|+.+.+||+++|+..+.+..|.++|+.+.|+.+...++++ -|..+++||.++....|+..+......|.
T Consensus        70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen   70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence            34458899999999999999999999999999999999999877766654 58899999999988888877777777888


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE----------------------------------------
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV----------------------------------------  122 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v----------------------------------------  122 (174)
                      ++...  +..|++|+.||++|.||+|.+....- ....+|                                        
T Consensus       150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             EEEec--ccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            87764  45688888888888888875432100 111222                                        


Q ss_pred             ----EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce-eEEEEEeecCC
Q 042260          123 ----NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL-RTFLFYHQDMT  174 (174)
Q Consensus       123 ----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~  174 (174)
                          .+++++.....+++|++||.|.+||+.......+++.++.+ ++-+-+||+|.
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~  283 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD  283 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence                34455555567888899999999999999999999999999 89999999873

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=1.2e-22  Score=161.32  Aligned_cols=148  Identities=21%  Similarity=0.285  Sum_probs=119.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCC-ceE-EEecCCcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNK-HYL-AAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      ++.+|++|+.|++|++||+.++       +.+..+..|...|..++|+|.+ .++ +++.|+.|++||++++  .....+
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~~~l  164 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAVEVI  164 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEEEEE
Confidence            4568999999999999998765       2466777888899999999974 344 4567899999999876  345566


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--CcEEEEEEccCCCEEEEee----CCCcEEEEeC
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--AAVNTVVLHPNQTELISGD----QNGNIRVWDL  148 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~----~d~~i~iwd~  148 (174)
                      ..|...|.+++|++++..|++++.|+.|++||+++...+..+..+  ..+..+.|.+++..+++++    .|+.|++||+
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            789999999999999999999999999999999988776665432  2345778888887777644    4789999999


Q ss_pred             CCCcc
Q 042260          149 TANSC  153 (174)
Q Consensus       149 ~~~~~  153 (174)
                      +....
T Consensus       245 r~~~~  249 (493)
T PTZ00421        245 RKMAS  249 (493)
T ss_pred             CCCCC
Confidence            97543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.5e-23  Score=165.71  Aligned_cols=152  Identities=26%  Similarity=0.465  Sum_probs=133.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce---eE------EeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe
Q 042260            5 SVILATASYDKTIKFWEAKSGRC---YR------TIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~---~~------~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      ..+|+++|.|.++++|++...++   ..      ....|+..|++++++|+..+++++ .|...+||+++.  ......+
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vL  501 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVL  501 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--ceEEEEe
Confidence            45899999999999999865221   11      223578889999999999999875 688999999984  3567778


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      .+|+..+.++.|++....++|+|.|++|+||.+.+..|..+++ |...|..+.|..++..|+++++||-|++|+++++.|
T Consensus       502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence            9999999999999999999999999999999999999999997 788999999999999999999999999999999999


Q ss_pred             eeecC
Q 042260          154 SCELG  158 (174)
Q Consensus       154 ~~~~~  158 (174)
                      .+.+-
T Consensus       582 ~~tlD  586 (775)
T KOG0319|consen  582 EMTLD  586 (775)
T ss_pred             hhhhh
Confidence            98764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=8.9e-23  Score=161.90  Aligned_cols=152  Identities=27%  Similarity=0.434  Sum_probs=128.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCC---------CC----
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSS---------SP----   68 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~---------~~----   68 (174)
                      ++++++|||+.||.|||||...|-|+.++..|.+.|+.+.|+..+..+ +++-||++|.||+..-         .+    
T Consensus       360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs  439 (893)
T KOG0291|consen  360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS  439 (893)
T ss_pred             CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence            578899999999999999999999999999999999999999877654 4567999999997311         00    


Q ss_pred             -----------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecc
Q 042260           69 -----------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYES  118 (174)
Q Consensus        69 -----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~  118 (174)
                                                   +.+-.+.+|.++|.+++|++.+..|+++|.|.+||+||+-.. ..+.++..
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence                                         112234589999999999999999999999999999998654 34566777


Q ss_pred             cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ...+..++|.|+|..|++++.||.|.+||++..-..
T Consensus       520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence            888999999999999999999999999999976444

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=4e-22  Score=159.60  Aligned_cols=151  Identities=13%  Similarity=0.198  Sum_probs=126.3

Q ss_pred             EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCC------CCeEEeecCCCCE
Q 042260           10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSP------QPVMSYDQHTNNV   81 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~v   81 (174)
                      +|+.++.+++|+..+...+..+..|...|.+++|+|. +.+++ ++.|+.|++||++++..      .+...+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            4677889999998877788888899999999999996 45554 56789999999976421      2334567899999


Q ss_pred             EEEEEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           82 MAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        82 ~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+++|+|++.. +++++.|+.|++||+++......+.+...|.+++|+|++..|++++.|+.|+|||++++....++..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99999998875 57899999999999998877766666778999999999999999999999999999999888776533

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=7.8e-23  Score=161.66  Aligned_cols=147  Identities=22%  Similarity=0.472  Sum_probs=134.1

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +++..+++|||.|++.|+|+++.......+.+|...++++.|+|...++++ ++|.++|||.+.+.  .+..++.+|...
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f--SClkT~eGH~~a  549 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF--SCLKTFEGHTSA  549 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc--eeeeeecCccce
Confidence            445668999999999999999999999999999999999999998777665 58999999999877  678889999999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      |..+.|-.+|+.|++++.||.+++|++++..|..++. |..+|.+++.+|...++++|+.||.|.+|.=-+
T Consensus       550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            9999999999999999999999999999999998885 678999999999999999999999999996443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=6.5e-23  Score=151.79  Aligned_cols=166  Identities=25%  Similarity=0.470  Sum_probs=132.5

Q ss_pred             EEEEeeCCCcEEEEECCCCce---eEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            7 ILATASYDKTIKFWEAKSGRC---YRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .|+||.+-+.|++|...+|.-   ...+..|...|.+++|+|.  +.+.+++-|+.|+|||++++..+.....+.|...|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            377888999999999887653   2345568888999999995  33444567999999999998666666668999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcce--
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCS--  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~--  154 (174)
                      ..+.|+..-.+|++|+.||+++|||+|+.+   ++.+| .|+.+|.++.|+|.. ..|++++.|.+|.|||+......  
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            999999887799999999999999998643   34455 468999999999965 56778889999999999965542  


Q ss_pred             ----eecCcccceeEEEEEeec
Q 042260          155 ----CELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       155 ----~~~~~~~~~~~~~~~~~~  172 (174)
                          -...++..+-|++|.||-
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqG  407 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQG  407 (440)
T ss_pred             hccccccchhcCCceeEEEecc
Confidence                112366777999999973

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=7.1e-23  Score=144.96  Aligned_cols=145  Identities=26%  Similarity=0.469  Sum_probs=120.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ...++++|+|++||+|+...++.+.++++|...|....|+|.  +.+.++++|+.+++||++... +.+ ..+.|..+++
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~-~i~ah~~Eil  194 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFM-SIEAHNSEIL  194 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-cee-EEEeccceeE
Confidence            345778899999999999999999999999999999999994  334456789999999998764 223 3678999999


Q ss_pred             EEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEe-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ++.|++ +.+.++||+.|+.||+||+|..+. +.. ..|.-.|..+.|+|.. ..|++++.|-++||||.+.+
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            999986 788999999999999999986442 223 3567789999999965 56789999999999999954

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-22  Score=141.61  Aligned_cols=153  Identities=21%  Similarity=0.352  Sum_probs=125.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +....+++++.||++++||+.. ..+++.+++|..+|.++.|++..  .++.++.|++||+|+..-+  ..+.++.+|..
T Consensus        71 ~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~  148 (311)
T KOG0277|consen   71 NHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNS  148 (311)
T ss_pred             CCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCcc
Confidence            4456789999999999999543 45788999999999999999843  4566789999999998654  56778899999


Q ss_pred             CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCc-cee
Q 042260           80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANS-CSC  155 (174)
Q Consensus        80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~-~~~  155 (174)
                      .|....|+| .++.++++|.|+.+++||++.+-.-..+. |...|.++.|+. +.+.|++|+.|+.||.||++.-+ -+.
T Consensus       149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence            999999998 68899999999999999998754333344 445899999987 56778999999999999999754 334


Q ss_pred             ec
Q 042260          156 EL  157 (174)
Q Consensus       156 ~~  157 (174)
                      ++
T Consensus       229 eL  230 (311)
T KOG0277|consen  229 EL  230 (311)
T ss_pred             ee
Confidence            44

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=4.2e-23  Score=154.03  Aligned_cols=149  Identities=27%  Similarity=0.489  Sum_probs=127.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++ .++|+|.|++|+|||....++...+.+|...|.+++|+|...+++++ .|..+++||-+++  .++.++..|...|
T Consensus       191 nDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--~cl~tlh~HKntV  267 (464)
T KOG0284|consen  191 NDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--SCLATLHGHKNTV  267 (464)
T ss_pred             CCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--chhhhhhhccceE
Confidence            344 37799999999999999998888889999999999999987777665 5678999999988  5566778899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +.+.|++++++|+|+|.|..++++|++.-+-..++. |+..+.+++|+| +.+.+.+|+.||.|..|.+....-.
T Consensus       268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~  342 (464)
T KOG0284|consen  268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL  342 (464)
T ss_pred             EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence            999999999999999999999999999654444454 678899999999 5677889999999999999844333

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=1.5e-23  Score=156.34  Aligned_cols=153  Identities=22%  Similarity=0.418  Sum_probs=129.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .++..++||+.+|.||+|+..-.. +..++. |..+|++++|+|. .+++.+++|+.|+|||..-.+...+  +.+|.-.
T Consensus       148 ~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwd  224 (464)
T KOG0284|consen  148 HNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWD  224 (464)
T ss_pred             cCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCC
Confidence            356789999999999999976543 334443 4478999999985 5567778899999999976644433  4789999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      |.+++|.|...+|++|+.|..|++||.++..|+.++ .|+..|..+.|+|+++.|+++|.|..++++|+++.+.++..+
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r  303 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR  303 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh
Confidence            999999999999999999999999999999988776 467889999999999999999999999999999877776654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=1.5e-23  Score=154.21  Aligned_cols=155  Identities=20%  Similarity=0.361  Sum_probs=127.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-CeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-PVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~v~   82 (174)
                      +..+|++||.|.||++||+++|+++.++-.|-..|..+.|+ +|.++.++.|..+++||..++... ....+.+|...|.
T Consensus       246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            35689999999999999999999998888887789999886 356677778999999999765421 2223558999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+.|+  .++|++++.|.++++|++.+..++.++. |+..|-|+.+  .++++++|++|.+||+||++.+.|+.-++..-
T Consensus       325 vVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  325 VVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             eeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence            99985  5699999999999999999999888774 5667877776  68999999999999999999999986655444


Q ss_pred             ce
Q 042260          162 GL  163 (174)
Q Consensus       162 ~~  163 (174)
                      ++
T Consensus       401 eL  402 (499)
T KOG0281|consen  401 EL  402 (499)
T ss_pred             Hh
Confidence            43

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.2e-22  Score=139.86  Aligned_cols=150  Identities=21%  Similarity=0.412  Sum_probs=129.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+.+|++.|++||+|++..|.+++++..|...|.+++.+.++..++ +++|..+.+||.++++  ....+.+|..+|.
T Consensus        28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVN  105 (307)
T KOG0316|consen   28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVN  105 (307)
T ss_pred             CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe--eeeecccccceee
Confidence            577899999999999999999999999999999999998887766555 5678899999999984  4566889999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .++|+.+...+++|+-|..+++||.|+.  +++..+ +....|.++.+  ++..+++|+.||++|.||++.+....+.
T Consensus       106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy  181 (307)
T KOG0316|consen  106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY  181 (307)
T ss_pred             EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh
Confidence            9999999999999999999999998764  344444 34677888887  5678999999999999999999877664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=153.40  Aligned_cols=168  Identities=23%  Similarity=0.452  Sum_probs=140.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +++.-++|+|.|+.+|+||+++|+++..+... ..+.++.|+|++  .+++++.|+.|+.||+++++  .+..|..|.+.
T Consensus       268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~  344 (503)
T KOG0282|consen  268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGA  344 (503)
T ss_pred             ccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhh
Confidence            56778999999999999999999999998753 468899999976  35667789999999999984  45568889999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE--------------------------------Ee-------------
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--------------------------------ME-------------  115 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------------------------------~~-------------  115 (174)
                      +..+.|.++|+.+++.+.|+.++||+.+.+..+                                ..             
T Consensus       345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence            999999999999999999999999997653210                                00             


Q ss_pred             -ec-c--cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260          116 -YE-S--RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       116 -~~-~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (174)
                       |. +  .+--..+.|+|+|.+|++|..||.+.+||-++.+....+.....++.-+-+||-.
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence             10 0  1124578999999999999999999999999999999998888899999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.90  E-value=5.7e-22  Score=143.03  Aligned_cols=166  Identities=21%  Similarity=0.339  Sum_probs=139.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++.+|||||.|..|.+|++.. -+.....+.|.++|..+.|.+++..+ +++.|..++.||.+++  +....+..|..-+
T Consensus        58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~v  135 (338)
T KOG0265|consen   58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFV  135 (338)
T ss_pred             CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhcccccee
Confidence            677899999999999999543 34567778999999999999987655 4567889999999998  4566677888888


Q ss_pred             EEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           82 MAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        82 ~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .++.-.. ...++.|++.|+++++||+|+..++++++.+.++.++.|..++..+++|+-|+.|++||++...+++.++..
T Consensus       136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh  215 (338)
T KOG0265|consen  136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH  215 (338)
T ss_pred             eecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc
Confidence            8887433 345788899999999999999999999988999999999999999999999999999999999999988766


Q ss_pred             cceeEEEEEee
Q 042260          161 YGLRTFLFYHQ  171 (174)
Q Consensus       161 ~~~~~~~~~~~  171 (174)
                      .+.+.-++..+
T Consensus       216 ~DtIt~lsls~  226 (338)
T KOG0265|consen  216 ADTITGLSLSR  226 (338)
T ss_pred             cCceeeEEecc
Confidence            66666655443

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=6e-21  Score=151.58  Aligned_cols=153  Identities=12%  Similarity=0.195  Sum_probs=123.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCcee-------------EEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCC--
Q 042260            6 VILATASYDKTIKFWEAKSGRCY-------------RTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSP--   68 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~--   68 (174)
                      ..+++++.+.....|+...+..+             ..+..|...|.+++|+| ++.+++ ++.|+.|++||+..+..  
T Consensus        33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~  112 (493)
T PTZ00421         33 SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ  112 (493)
T ss_pred             CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc
Confidence            45678888888888876544322             13556788899999999 555554 56789999999976532  


Q ss_pred             ---CCeEEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260           69 ---QPVMSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus        69 ---~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i  143 (174)
                         .++..+.+|...|.+++|+|++ +.|++++.|+.|+|||+++......+. +...|.+++|+|+++.|++++.|++|
T Consensus       113 ~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~I  192 (493)
T PTZ00421        113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL  192 (493)
T ss_pred             ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEE
Confidence               3456678899999999999975 699999999999999999887776664 56789999999999999999999999


Q ss_pred             EEEeCCCCcceeecC
Q 042260          144 RVWDLTANSCSCELG  158 (174)
Q Consensus       144 ~iwd~~~~~~~~~~~  158 (174)
                      ++||++++....++.
T Consensus       193 rIwD~rsg~~v~tl~  207 (493)
T PTZ00421        193 NIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEECCCCcEEEEEe
Confidence            999999988777664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.8e-22  Score=145.74  Aligned_cols=145  Identities=23%  Similarity=0.510  Sum_probs=129.4

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC----------C-----ceE-EEecCCcEEEEEcCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN----------K-----HYL-AAAGNPHIRLFDVNS   65 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~~-~~~~d~~i~i~d~~~   65 (174)
                      .+++.+++++|.|.+|++|-+.++++...++.|+-+|.+++|.|.          +     .++ +++.|+.||+||+.+
T Consensus       244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            478999999999999999999999999999999889999998753          1     233 445799999999998


Q ss_pred             CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        66 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                      +  .++.++.+|.+-|..++|+|.|++|+++.+|+++++||++...|.+++.. ..-++++.|+.+..++++|+-|.+++
T Consensus       324 g--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  324 G--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             C--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence            8  67888999999999999999999999999999999999999999988764 56789999999999999999999999


Q ss_pred             EEeC
Q 042260          145 VWDL  148 (174)
Q Consensus       145 iwd~  148 (174)
                      +|.-
T Consensus       402 vwEc  405 (406)
T KOG0295|consen  402 VWEC  405 (406)
T ss_pred             eeec
Confidence            9964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=3.5e-23  Score=151.30  Aligned_cols=154  Identities=23%  Similarity=0.444  Sum_probs=135.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEee--------cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ--------YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~   73 (174)
                      +++++|++||-||.|.+||..+|+....++        .++.+|.++.|+.+..+++++ .|+.|++|.++++  .++..
T Consensus       223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG--~ClRr  300 (508)
T KOG0275|consen  223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG--QCLRR  300 (508)
T ss_pred             CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc--hHHHH
Confidence            478899999999999999999887654432        356789999999998888765 6899999999998  45555


Q ss_pred             ee-cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           74 YD-QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        74 ~~-~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ++ .|...|+++.|+.++..+.+++.|.++|+.-++++++.+.+. |.+-|+...|.++|..++++++||+|++|+.++.
T Consensus       301 FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  301 FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence            55 799999999999999999999999999999999999988885 5677999999999999999999999999999999


Q ss_pred             cceeecC
Q 042260          152 SCSCELG  158 (174)
Q Consensus       152 ~~~~~~~  158 (174)
                      .|+..+.
T Consensus       381 eC~~Tfk  387 (508)
T KOG0275|consen  381 ECLSTFK  387 (508)
T ss_pred             hhhhhcc
Confidence            9998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.5e-20  Score=137.42  Aligned_cols=153  Identities=33%  Similarity=0.654  Sum_probs=130.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++..+++++.|+.+++||+.+++.+..+..+...+.++.|++++.+++++. ++.+++||+++.  .....+..|...+.
T Consensus        62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~  139 (289)
T cd00200          62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGHTDWVN  139 (289)
T ss_pred             CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccCCCcEE
Confidence            345789999999999999999888888888887899999999888887776 899999999865  33445567888999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++.++++++++++++.|+.+++||++.......+. +...+.++.++|+++.+++++.|+.|++||++......++.
T Consensus       140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  216 (289)
T cd00200         140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR  216 (289)
T ss_pred             EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh
Confidence            99999999999999889999999998766655554 44589999999999999999999999999999877776663

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.9e-20  Score=136.87  Aligned_cols=153  Identities=35%  Similarity=0.641  Sum_probs=131.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.++++++.|+.+++||+++++....+..+...+.++.|+|++.+++++. ++.+++||++.++  ....+..|...+.+
T Consensus       105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~  182 (289)
T cd00200         105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNS  182 (289)
T ss_pred             CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecCccccce
Confidence            46788888899999999998888888887888899999999888888776 8999999998663  34445678889999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      +.|+++++.+++++.|+.+++||++.......+ .+...+.++.++|++..+++++.|+.|++||+..+.....+..
T Consensus       183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence            999999999999999999999999987777666 5667899999999988888888899999999998777766653

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=1.5e-20  Score=150.67  Aligned_cols=150  Identities=17%  Similarity=0.307  Sum_probs=114.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--------eeEEeecCCCCeEEEEEcCCCce-EE-EecCCcEEEEEcCCCCCCCeEEe
Q 042260            5 SVILATASYDKTIKFWEAKSGR--------CYRTIQYPDSQVNRLEITPNKHY-LA-AAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      +.+|+|||.|++|++||+.++.        .+..+..|...|.+++|+|.+.. ++ ++.|+.|++||+++++.  ...+
T Consensus        87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i  164 (568)
T PTZ00420         87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI  164 (568)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE
Confidence            5689999999999999987642        23456678888999999998764 33 45789999999987642  3333


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEE-----EEEEccCCCEEEEeeCCC----cEE
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVN-----TVVLHPNQTELISGDQNG----NIR  144 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~-----~~~~~~~~~~l~s~~~d~----~i~  144 (174)
                      . |...+.+++|+++|.+|++++.|+.|+|||+++.....++. |...+.     ...|++++..+++++.|+    +|+
T Consensus       165 ~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        165 N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence            3 55789999999999999999999999999999988776664 333332     233558888999887764    799


Q ss_pred             EEeCCC-Ccceeec
Q 042260          145 VWDLTA-NSCSCEL  157 (174)
Q Consensus       145 iwd~~~-~~~~~~~  157 (174)
                      |||+++ .......
T Consensus       244 LWDlr~~~~pl~~~  257 (568)
T PTZ00420        244 LWDLKNTTSALVTM  257 (568)
T ss_pred             EEECCCCCCceEEE
Confidence            999996 4444443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.88  E-value=1.4e-21  Score=148.04  Aligned_cols=143  Identities=24%  Similarity=0.435  Sum_probs=130.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---------c-eEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---------H-YLAAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------~-~~~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      +.+|+|+|.|+|+|||....+.+.+.+..|...|..+.|+|.+         . ++.++.|..+++||+..+  .++..+
T Consensus       371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f  448 (524)
T KOG0273|consen  371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTL  448 (524)
T ss_pred             CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEee
Confidence            6789999999999999999999999999998899999999864         2 345567899999999877  667778


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ..|+.+|.+++|+|+|+++++|+.||.|.+|+++..+..+.+.....|..++|+.+++.|..+-+|+.+++-|++
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            899999999999999999999999999999999999998888888889999999999999988899999999886

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.4e-22  Score=154.48  Aligned_cols=148  Identities=25%  Similarity=0.537  Sum_probs=129.1

Q ss_pred             cEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ..+++|+|.|-+||+||.+. ..+.+++.+|...|-.++|+|.  +.+.+++-|+++|+|.+.++  .+..++++|...|
T Consensus       109 ~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~--~~nfTl~gHekGV  186 (794)
T KOG0276|consen  109 LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP--HPNFTLEGHEKGV  186 (794)
T ss_pred             CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC--CCceeeeccccCc
Confidence            34789999999999999876 4778999999999999999994  45566678999999999655  6677888999999


Q ss_pred             EEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .++.|.+.|.  +++||+.|..++|||..+..|+.+++ |...|+.+.|+|.=+.+++|++||++|||+-.+-+..
T Consensus       187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence            9999987543  89999999999999999998888875 6788999999999999999999999999998876543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.5e-22  Score=157.75  Aligned_cols=151  Identities=21%  Similarity=0.362  Sum_probs=129.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC--------------------------------C-------------------------
Q 042260            3 QPSVILATASYDKTIKFWEAKS--------------------------------G-------------------------   25 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~--------------------------------~-------------------------   25 (174)
                      .+|++||+||.|+.||||.+..                                .                         
T Consensus       277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~  356 (712)
T KOG0283|consen  277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV  356 (712)
T ss_pred             CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence            4789999999999999998644                                0                         


Q ss_pred             ---ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCc
Q 042260           26 ---RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGT  101 (174)
Q Consensus        26 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~  101 (174)
                         ++++.+.+|.+.|.++.|+.++.+|.++-|.++|+|++...  .++..+ .|.+-|+|++|+| |.++|++|+-||.
T Consensus       357 f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  357 FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEE-ecCCeeEEEEecccCCCcEeecccccc
Confidence               12344556667899999999999999999999999999765  555555 4889999999998 7889999999999


Q ss_pred             EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          102 VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       102 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      ||||++...+++...+.+.-|++++|.|+|+..+.|+-+|.+++|+........+
T Consensus       434 vRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  434 VRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             eEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            9999999988888778888999999999999999999999999999997655433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=2.8e-21  Score=154.17  Aligned_cols=151  Identities=28%  Similarity=0.500  Sum_probs=128.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .+.++++|+.|+++|+||..+|+|.+++.+|...+.++...+. .++.++.|.++++|+++++  ..+..+.+|...|.+
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~--~~l~l~~~h~~~V~~  336 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNG--ACLNLLRGHTGPVNC  336 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCc--ceEEEeccccccEEE
Confidence            3668999999999999999999999999999888888876442 2333467999999999876  456666679999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC-cceeecCcc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN-SCSCELGLQ  160 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~  160 (174)
                      +..+  +.++++|+.|++|++||+++.++...+. |..+|.++.+.+. +.+++|+.|++|++||++++ .|...+..+
T Consensus       337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH  412 (537)
T ss_pred             EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence            9986  8899999999999999999999988774 6788999988655 89999999999999999999 888776533

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.88  E-value=7.1e-21  Score=144.34  Aligned_cols=165  Identities=19%  Similarity=0.369  Sum_probs=142.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .+.+|++++.|+++.+||..+|+..+-+..|..+..++.|-.+..+...+.|+.|+++.+...  .|..++.+|.++|.+
T Consensus       287 ~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  287 KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNA  364 (524)
T ss_pred             CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC--CcceeeecccCceEE
Confidence            466899999999999999999999998988888778899988777777788999999998655  567778899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC---------EEEEeeCCCcEEEEeCCCCcc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT---------ELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      +.|+|.+.+|+|+|.|++++||.+....+...+. |...|..+.|+|++.         .+++++.|++|++||+..+.+
T Consensus       365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~  444 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP  444 (524)
T ss_pred             EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence            9999999999999999999999998877666554 456788888887663         588999999999999999999


Q ss_pred             eeec-CcccceeEEEEEe
Q 042260          154 SCEL-GLQYGLRTFLFYH  170 (174)
Q Consensus       154 ~~~~-~~~~~~~~~~~~~  170 (174)
                      .+.+ .++..|.+..|.|
T Consensus       445 i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             eEeeccCCCceEEEEecC
Confidence            9997 6777777777764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.88  E-value=5.9e-21  Score=135.21  Aligned_cols=143  Identities=23%  Similarity=0.421  Sum_probs=122.6

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      +.|++++.|++||+||.++|..++++... .+|.++.++++|.++..+....|++||..+-+  .+..++ ...+|.+..
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~--~lKs~k-~P~nV~SAS  231 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG--LLKSYK-MPCNVESAS  231 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEecccccc--ceeecc-Ccccccccc
Confidence            34667799999999999999999999765 57999999999999999988899999997653  333333 357788989


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..|+...+++|++|+.++.||..+..-+..+  .+..+|.|+.|+|+|...++|++||+||||.+..++
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9999999999999999999999887655443  577899999999999999999999999999998654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.87  E-value=2.8e-21  Score=142.61  Aligned_cols=156  Identities=27%  Similarity=0.430  Sum_probs=135.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ..++++++.|+.||.||++.++.++.+.+|-+.|.+++.+|.-..+++ +.|..+|+||+++.  ..+..+.+|+..|..
T Consensus       205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~  282 (460)
T KOG0285|consen  205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVAS  282 (460)
T ss_pred             CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCccee
Confidence            357999999999999999999999999999999999999997665554 56888999999987  557778899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      +.+.+-.-.++|||.|++|++||++..+...+. .++..+.+++.+|..+.+++++.| .|+-|++-.+.....+..+..
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA  361 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc
Confidence            999987778999999999999999998887766 456789999999999999999988 599999998887766554443


Q ss_pred             e
Q 042260          163 L  163 (174)
Q Consensus       163 ~  163 (174)
                      .
T Consensus       362 i  362 (460)
T KOG0285|consen  362 I  362 (460)
T ss_pred             e
Confidence            3

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=4.1e-20  Score=155.16  Aligned_cols=143  Identities=18%  Similarity=0.398  Sum_probs=117.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +..|++++.|++|++||+.+++.+..+..|...|.+++|+| ++.+++ ++.|+.+++||++++.  ....+.. ...+.
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~  621 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT-KANIC  621 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec-CCCeE
Confidence            45799999999999999999999999989999999999997 555554 5578899999998763  3444443 36788


Q ss_pred             EEEEe-eCCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQ-CDGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ++.|. +++..+++|+.||.|++||++... ....+ .+...|.++.|. ++..+++++.|++|++||++..
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence            99985 479999999999999999998754 23333 466789999997 6788999999999999999853

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.3e-22  Score=160.34  Aligned_cols=151  Identities=27%  Similarity=0.510  Sum_probs=135.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.+|++|+.+|+||+||+++++.++.+.+|...+..+.|+|-+.+++++ .|..+++||.+-.  .+...+..|...+..
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~--Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK--GCSHTYKSHTRVVDV  159 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc--CceeeecCCcceeEE
Confidence            4578999999999999999999999999999999999999999888654 5788999999855  456677889999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +.|+|+|++++.|++|..++|||...++...+|. +...+..+.|+|..-.+++|+.|++|++||+++.....+.
T Consensus       160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            9999999999999999999999999999888887 6788999999999999999999999999999987655444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.87  E-value=5.2e-22  Score=150.68  Aligned_cols=146  Identities=20%  Similarity=0.414  Sum_probs=126.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .+++|+++|.|+.|+||++.. +++++++.+|..+|.++.|++++. +++++-|+.+++||.++++.  ...+. ....+
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~--~~~f~-~~~~~  302 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV--LSRFH-LDKVP  302 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE--EEEEe-cCCCc
Confidence            578999999999999999876 899999999999999999999876 45567799999999999843  33332 23557


Q ss_pred             EEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           82 MAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        82 ~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .++.|.|++ +.|+.|+.|+.|+-||+|+++.+.++.+ -+.|+++.|-+++..+++.+.|++++||+.+.+.
T Consensus       303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            788899987 8999999999999999999998877754 4789999999999999999999999999999764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=9.2e-21  Score=142.80  Aligned_cols=168  Identities=24%  Similarity=0.359  Sum_probs=126.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce-------eEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC-------YRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~   73 (174)
                      +....|++|+.|++|.+||+.....       ...+..|...|..++|++... ++ +.+.|+.+.|||.|++..++...
T Consensus       188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~  267 (422)
T KOG0264|consen  188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS  267 (422)
T ss_pred             ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence            3456789999999999999865432       344567888999999998543 33 44567789999999654455566


Q ss_pred             eecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260           74 YDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~  149 (174)
                      ..+|...+.+++|+| ++..|||||.|++|++||+|... +..++ .|+..|..+.|+|. .+.|++++.|+.+.+||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            678999999999998 56678999999999999999754 33444 56788999999995 5678899999999999999


Q ss_pred             CCcceee-cCcccceeEEEEEe
Q 042260          150 ANSCSCE-LGLQYGLRTFLFYH  170 (174)
Q Consensus       150 ~~~~~~~-~~~~~~~~~~~~~~  170 (174)
                      .-...+. .....++--++|-|
T Consensus       348 ~ig~eq~~eda~dgppEllF~H  369 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIH  369 (422)
T ss_pred             ccccccChhhhccCCcceeEEe
Confidence            6433322 23444445555555

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=150.45  Aligned_cols=156  Identities=25%  Similarity=0.444  Sum_probs=129.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEE-cCCCceEEEe-cCCcEEEEEcCCCCCCCeE------
Q 042260            3 QPSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEI-TPNKHYLAAA-GNPHIRLFDVNSSSPQPVM------   72 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~------   72 (174)
                      ..+..|+|+|.|-+|++|+...+  -|...+..|...|.+++. .+++.+++++ -|+.|.+||++++......      
T Consensus        83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen   83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence            34567999999999999998776  567778889899999999 6666666654 5899999999865221111      


Q ss_pred             --Ee-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           73 --SY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        73 --~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                        .+ .+++..+-+++.++.|..|++|+.++.+++||.++.+.+..+ .|...|.++..+++|+.++++|+||+|++||+
T Consensus       163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence              11 267888999999999999999999999999999987655444 67789999999999999999999999999999


Q ss_pred             CCCcceeecC
Q 042260          149 TANSCSCELG  158 (174)
Q Consensus       149 ~~~~~~~~~~  158 (174)
                      ...+|...+.
T Consensus       243 gqQrCl~T~~  252 (735)
T KOG0308|consen  243 GQQRCLATYI  252 (735)
T ss_pred             cccceeeeEE
Confidence            9999997754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.2e-20  Score=152.33  Aligned_cols=167  Identities=22%  Similarity=0.380  Sum_probs=135.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCC---CC--------------
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSS---SP--------------   68 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~---~~--------------   68 (174)
                      -|+|+|.|.|||||+..+++++....+|...|-+..|+|...+++ ++-|.+||+||+..-   ..              
T Consensus       107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence            488999999999999999999999999999999999999666555 567999999997311   00              


Q ss_pred             --------CC--eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---EeecccCcEEEEEEccCCCEEE
Q 042260           69 --------QP--VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---MEYESRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        69 --------~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~  135 (174)
                              ..  ...+++|...|..++|.|.--.|++|+.|+.|++|.+...+.-   .-..|..+|.++.|+|..+.++
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl  266 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL  266 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence                    11  1235689999999999998899999999999999998754321   1125678899999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260          136 SGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (174)
                      +.|+|++||+||++...+++.++.-.+.-=++-.||.|
T Consensus       267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence            99999999999999999998886444444445556554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.7e-20  Score=142.61  Aligned_cols=151  Identities=19%  Similarity=0.346  Sum_probs=128.4

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ....++++|||+||+||+||.+.. ..+.++. |+.+|..+.+-|.|.++++++...+|+||+-++.... ..+..|...
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll-~~~~~H~Kt  240 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL-TSMFNHNKT  240 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh-hhhhcccce
Confidence            345679999999999999999887 5566664 7788999999999999999988999999998664332 223348899


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      |+|+++..++..|++|+-|+.|++||+...+.+..+..+++|.+++++|++..++.|..||.+.+=+...++..
T Consensus       241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~  314 (487)
T KOG0310|consen  241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP  314 (487)
T ss_pred             EEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999998777655544433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.9e-20  Score=132.07  Aligned_cols=154  Identities=26%  Similarity=0.493  Sum_probs=127.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCC---ceeEEee-cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSG---RCYRTIQ-YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+|+|||.|+.||+|+...+   .+...+. .|...|..++|+|.+.+++++ -|.++-||.-..++..+..++++|.+
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            458999999999999998753   3333332 467789999999999988765 58899999988888888999999999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC-CC--c
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT-AN--S  152 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~  152 (174)
                      .|.+++|+++|++|||+++|..|=||.+...   .|...+ .|.+.|..+.|||....|++++.|.+|++|.-. ..  .
T Consensus       107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~  186 (312)
T KOG0645|consen  107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE  186 (312)
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence            9999999999999999999999999998732   333333 567789999999999999999999999999998 44  3


Q ss_pred             ceeecC
Q 042260          153 CSCELG  158 (174)
Q Consensus       153 ~~~~~~  158 (174)
                      |.+++.
T Consensus       187 c~~tl~  192 (312)
T KOG0645|consen  187 CVQTLD  192 (312)
T ss_pred             EEEEec
Confidence            455543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.87  E-value=1.7e-20  Score=135.49  Aligned_cols=165  Identities=19%  Similarity=0.427  Sum_probs=138.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ..++.||+.|+++|+||.+..+.+..+. ...+++++.|...+.. ++++-|+.|++||++.+  .....+.+|...|+.
T Consensus       145 ~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~--d~~~~lsGh~DtIt~  221 (338)
T KOG0265|consen  145 PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN--DGLYTLSGHADTITG  221 (338)
T ss_pred             CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccC--cceEEeecccCceee
Confidence            4578999999999999999988887775 3467999999987654 55567899999999876  556778899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEeecc-----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEYES-----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +..++.|.++.+-+-|..+++||++.    ..++..+..     .-.-..++|+|+++.+.+|+.|+.+.+||.....++
T Consensus       222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL  301 (338)
T ss_pred             EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence            99999999999999999999999975    233443422     223567899999999999999999999999999999


Q ss_pred             eecCcccceeEEEEEeec
Q 042260          155 CELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~  172 (174)
                      +.++..+.-.-=+.|||+
T Consensus       302 yklpGh~gsvn~~~Fhp~  319 (338)
T KOG0265|consen  302 YKLPGHYGSVNEVDFHPT  319 (338)
T ss_pred             EEcCCcceeEEEeeecCC
Confidence            999988877777777775

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.86  E-value=7.7e-22  Score=145.30  Aligned_cols=145  Identities=23%  Similarity=0.461  Sum_probs=123.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+++|..|.||++||.++-.+...+.+|.+.|.++.+... .+++++.|.++++||+++++  ++.++-+|...|..+.|
T Consensus       209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf  285 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRF  285 (499)
T ss_pred             hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEE
Confidence            5889999999999999999999999999999999998643 44555678899999999984  45566689999999999


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeE----EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQ----MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +  ..+++|++.|.++++||+..+.-+    ....|...|+.+.|  +++++++++.|.+|++|++.+.+|+..+.
T Consensus       286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~  357 (499)
T KOG0281|consen  286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLN  357 (499)
T ss_pred             e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhh
Confidence            6  578999999999999999887522    11256788999998  55799999999999999999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.3e-21  Score=154.16  Aligned_cols=147  Identities=20%  Similarity=0.424  Sum_probs=121.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ..+|+|||.||+||+||++..+...++......|.++.|+|. +..+ ++..+|.+.+||++... .+...+.+|++.|.
T Consensus       146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCEKKLTAHNGPVL  224 (839)
T ss_pred             ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-hHHHHhhcccCceE
Confidence            458999999999999999998888888877778999999984 3344 44567789999998764 45566789999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCE-EEEee--CCCcEEEEeCCCCc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTE-LISGD--QNGNIRVWDLTANS  152 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~s~~--~d~~i~iwd~~~~~  152 (174)
                      ++.|+|++.+||||+.|++|+|||+..+  ....+++...++.++.|-|..+. |++++  .|-.|++||++.+=
T Consensus       225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            9999999999999999999999999754  34566777899999999997665 56544  46789999999863

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.1e-20  Score=140.55  Aligned_cols=166  Identities=20%  Similarity=0.305  Sum_probs=138.0

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++++.++++|+.|+.+++||+.+......+..|...|.+.+++|.+. +++ ++.|+.||+||.++.. ..+..+ .|..
T Consensus       120 ~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~  197 (487)
T KOG0310|consen  120 PQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGC  197 (487)
T ss_pred             ccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCC
Confidence            46788999999999999999999887668888999999999999654 444 4579999999999875 445555 4788


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +|..+.+-|.|..|++++.. .|++||+-++.. .... .|.-.|+|+.+.-++..|++|+-|+.|++||+.+-+..+.+
T Consensus       198 pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            99999999999999998754 899999975433 2223 47778999999999999999999999999999999999888


Q ss_pred             CcccceeEEEEEe
Q 042260          158 GLQYGLRTFLFYH  170 (174)
Q Consensus       158 ~~~~~~~~~~~~~  170 (174)
                      ..+..+......+
T Consensus       277 ~~~~pvLsiavs~  289 (487)
T KOG0310|consen  277 KYPGPVLSIAVSP  289 (487)
T ss_pred             ecccceeeEEecC
Confidence            8777777766655

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=3.3e-21  Score=140.12  Aligned_cols=154  Identities=22%  Similarity=0.424  Sum_probs=125.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCC-eEEeecCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQP-VMSYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~-~~~~~~~~~~   80 (174)
                      ..+|++|++|++||+||.......+.++  ....+|.++.|+|.|.++..+.|. .+|+||+++-+.-. ...-+.|...
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            5689999999999999976543332222  233579999999999998877654 68999998753211 1123568899


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      |+++.+++.+++.+|++.||.|++||=-+.+|+.++.   .+..|.+..|..+++++++.+.|..+++|.+.+++++...
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999999999999999999999999988888887764   3578999999999999999999999999999999999775


Q ss_pred             C
Q 042260          158 G  158 (174)
Q Consensus       158 ~  158 (174)
                      +
T Consensus       344 t  344 (430)
T KOG0640|consen  344 T  344 (430)
T ss_pred             e
Confidence            4

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=3.1e-20  Score=140.00  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=128.8

Q ss_pred             CCCCcEEEEEeeCCCcEEEEECCCCcee----------EEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC-
Q 042260            1 MAQPSVILATASYDKTIKFWEAKSGRCY----------RTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS-   67 (174)
Q Consensus         1 ~~~~~~~l~s~s~D~~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~-   67 (174)
                      |+|...+++|.+..+.+.|||.......          ..+.+|...-.+++|++.  +.+++++.|..+++||+.... 
T Consensus       133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~  212 (422)
T KOG0264|consen  133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK  212 (422)
T ss_pred             CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccccc
Confidence            8899999999999999999997543221          245667666778999985  556777788899999997543 


Q ss_pred             ----CCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCC--CeeEEee-cccCcEEEEEEcc-CCCEEEEee
Q 042260           68 ----PQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRA--PVCQMEY-ESRAAVNTVVLHP-NQTELISGD  138 (174)
Q Consensus        68 ----~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~  138 (174)
                          ..+...+.+|...|..++|.+ +...|++++.|+.+.|||+|+  .++.... .|..++++++|+| ++..||+||
T Consensus       213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S  292 (422)
T KOG0264|consen  213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS  292 (422)
T ss_pred             CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence                234556789999999999997 566899999999999999995  3333333 4578899999999 566788999


Q ss_pred             CCCcEEEEeCCCC-cceeecCcccceeEEEE
Q 042260          139 QNGNIRVWDLTAN-SCSCELGLQYGLRTFLF  168 (174)
Q Consensus       139 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~  168 (174)
                      .|++|++||+|+- .+...++.+...+--+.
T Consensus       293 ~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  293 ADKTVALWDLRNLNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             CCCcEEEeechhcccCceeccCCCcceEEEE
Confidence            9999999999984 46666654444433333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=2.5e-19  Score=150.49  Aligned_cols=147  Identities=24%  Similarity=0.363  Sum_probs=118.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCC----c----eeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCCCCeE
Q 042260            3 QPSVILATASYDKTIKFWEAKSG----R----CYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~~~~~   72 (174)
                      .++.+|+||+.|++|++||.+..    .    ....+. +...+.+++|++. +..++ ++.|+.+++||+.++  ..+.
T Consensus       493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~  569 (793)
T PLN00181        493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVT  569 (793)
T ss_pred             CCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEE
Confidence            35678999999999999997531    1    122222 3456889999874 44454 456899999999876  3455


Q ss_pred             EeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEc-cCCCEEEEeeCCCcEEEEeCCC
Q 042260           73 SYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLH-PNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .+..|...|.+++|++ ++.+|++|+.|+.|++||+++..+...+.....+.++.|+ +++..+++|+.|+.|++||+++
T Consensus       570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            6778999999999996 7899999999999999999988877777777789999995 5688999999999999999997


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      ..
T Consensus       650 ~~  651 (793)
T PLN00181        650 PK  651 (793)
T ss_pred             CC
Confidence            65

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.86  E-value=7.4e-20  Score=140.50  Aligned_cols=160  Identities=18%  Similarity=0.341  Sum_probs=122.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCCCceEEEecCC-----cEEEEEcCCC---------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPNKHYLAAAGNP-----HIRLFDVNSS---------   66 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~---------   66 (174)
                      +.+-++++|...|+|||||....+.  ..+++.-.++|.+++|+.+++.+++.+++     .+.+||--+.         
T Consensus        69 PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr  148 (603)
T KOG0318|consen   69 PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR  148 (603)
T ss_pred             CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccce
Confidence            4577899999999999999765333  23333345677788888777766655432     2455653210         


Q ss_pred             ----------C--------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           67 ----------S--------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        67 ----------~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                                +                    .+.......|..-|.++.|+|+|.+|+|.+.||.+.+||=.+...+..+
T Consensus       149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l  228 (603)
T KOG0318|consen  149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL  228 (603)
T ss_pred             eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe
Confidence                      0                    0112233467788999999999999999999999999999998888777


Q ss_pred             c----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260          117 E----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus       117 ~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      +    |...|.++.|+|++..+++++.|++++|||+.+.++..++++...
T Consensus       229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence            5    567899999999999999999999999999999999888765544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9e-21  Score=152.97  Aligned_cols=144  Identities=20%  Similarity=0.453  Sum_probs=130.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ...++++-..|.|.+||.+-+.++..|..|+++|.+++|+|++.++++++| ..|++|...+.  .++.++.+|..-|..
T Consensus        21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt   98 (1202)
T KOG0292|consen   21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRT   98 (1202)
T ss_pred             CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEE
Confidence            346889999999999999999999999999999999999999998887765 56999999766  566778899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      +.|++.-=+|+++|.|.+|+||+..+..|+... .|..-|-|..|+|.+..++++|-|.+||+||+.-
T Consensus        99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            999988889999999999999999999888766 4667899999999999999999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.85  E-value=2e-20  Score=149.33  Aligned_cols=150  Identities=24%  Similarity=0.497  Sum_probs=129.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      ...+++||.|.+|++|+++++.++..+..|..+|.++..+ .+.+++++.|+.|++||+.+.  +++..+.+|...|.++
T Consensus       301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSL  377 (537)
T ss_pred             CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEE
Confidence            4567889999999999999999999999899999999998 456667778999999999866  6778888999999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+... ..+++|+.|+.|++||+++. .|+.++.++. .+..+.  ..++.|++++.|++|++||.+++.|.+.+..+
T Consensus       378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             EecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccC
Confidence            87654 89999999999999999999 8888876554 444444  47899999999999999999999999888653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=4.4e-20  Score=133.52  Aligned_cols=146  Identities=21%  Similarity=0.285  Sum_probs=119.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC-CceeE-EeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKS-GRCYR-TIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +...+++.||+|++||+|+++. |..+. ....++++|.+++|+.++..++ ++.|+.+++||+.+++..   ....|..
T Consensus        38 ~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---~v~~Hd~  114 (347)
T KOG0647|consen   38 QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS---QVAAHDA  114 (347)
T ss_pred             ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee---eeeeccc
Confidence            3456788999999999999987 44443 3345788999999999886654 557899999999988533   3457999


Q ss_pred             CEEEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           80 NVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        80 ~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      .|..+.|.+...  .|+|||.|.++++||+|.+..+.+...+.++.++..  -...++.+..++.|.+|+++++.-
T Consensus       115 pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~t  188 (347)
T KOG0647|consen  115 PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPT  188 (347)
T ss_pred             ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcc
Confidence            999999988666  899999999999999999999998888888887665  456777888899999999987643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.7e-21  Score=152.99  Aligned_cols=146  Identities=21%  Similarity=0.472  Sum_probs=121.8

Q ss_pred             cEEEEEeeCCCcEEEEECCC---CceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKS---GRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+|||++..|.|.+||+..   .+.+..+..|...++.++|++..  .+++++.|+.||+||++....  ..++.+...
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSE  177 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSE  177 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccch
Confidence            45899999999999999876   56677888999999999999854  345566799999999988743  334455677


Q ss_pred             CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .|..+.|+| .+..|+++.+.|.+.+||+|.+. +...+ -|.++|.++-|+|++..||+||.|+.|+|||+..++
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            899999997 57789999999999999999865 33333 467899999999999999999999999999999653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.7e-20  Score=144.95  Aligned_cols=160  Identities=23%  Similarity=0.330  Sum_probs=132.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+..|+.|-.+|.|.|||.++.+.++.+.. |...|.+++|+ ...+..++.++.|..+|++..+.... .+.+|...|
T Consensus       227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeV  304 (484)
T KOG0305|consen  227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEV  304 (484)
T ss_pred             CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhh-hhhccccee
Confidence            4678999999999999999999999999988 88899999998 33445556789999999988754333 477899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccC-CCEEEEe--eCCCcEEEEeCCCCcceeec
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPN-QTELISG--DQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~s~--~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +.+.|+++++++|+|+.|+.+.|||...+.....+ +|..+|.+++|+|. .+.||+|  +.|+.|++||..++.+....
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            99999999999999999999999999777666655 67889999999995 5677775  46999999999998766544


Q ss_pred             Cccccee
Q 042260          158 GLQYGLR  164 (174)
Q Consensus       158 ~~~~~~~  164 (174)
                      -..+-++
T Consensus       385 dtgsQVc  391 (484)
T KOG0305|consen  385 DTGSQVC  391 (484)
T ss_pred             ccCCcee
Confidence            3333333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=1.7e-19  Score=128.35  Aligned_cols=154  Identities=27%  Similarity=0.494  Sum_probs=120.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCC----------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSS----------------   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~----------------   66 (174)
                      .+.++++++.|++|++||.+.+++...+......+. +.|+|++..++.+ .|+.|.+.|.+..                
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence            356799999999999999999998877765443333 3455555544433 3444444443311                


Q ss_pred             -----------------------CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcE
Q 042260           67 -----------------------SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAV  122 (174)
Q Consensus        67 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v  122 (174)
                                             .++++...++|...+.++.|+|+|++||+|+.|..+-+||+....|...+. ...+|
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV  234 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV  234 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence                                   234555667899999999999999999999999999999999888887774 57899


Q ss_pred             EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ..+.|+.++++||+|++|-.|-|=+++++....+++
T Consensus       235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  235 RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             EEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence            999999999999999999999998888888776643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.6e-19  Score=129.23  Aligned_cols=153  Identities=18%  Similarity=0.368  Sum_probs=123.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEee---cCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYD---QHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~~   80 (174)
                      +..++|+|.|++||+||++..++..-+.....++  .+|.|+|.+++.+. ...|++||++.-...|..++.   ....+
T Consensus       112 ~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e  189 (311)
T KOG1446|consen  112 DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE  189 (311)
T ss_pred             CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence            4578999999999999999888877776554444  77999999988764 448999999876545544443   33678


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc----EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA----VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      ...+.|+++|+.+.-+...+.+++.|--.+....++.....    ..+.+|.|++++|++|+.||+|.+|+++++..+..
T Consensus       190 w~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  190 WTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             eeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence            89999999999999999999999999888777766654322    25889999999999999999999999999988766


Q ss_pred             cCc
Q 042260          157 LGL  159 (174)
Q Consensus       157 ~~~  159 (174)
                      ++.
T Consensus       270 ~~~  272 (311)
T KOG1446|consen  270 LRG  272 (311)
T ss_pred             ecC
Confidence            543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=2.5e-19  Score=142.51  Aligned_cols=154  Identities=17%  Similarity=0.380  Sum_probs=137.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC--CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ..+|++|=..|...+|++-.-..++.+...+.+|..++|+..|..++-+..  +++-+|++.++  ..+.+.++|-..+.
T Consensus       277 t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~  354 (893)
T KOG0291|consen  277 TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRIT  354 (893)
T ss_pred             ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeecccccccee
Confidence            467889999999999999999999999888889999999999998876644  58999999887  45667789999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +++++|||.+++||++||.|+|||..++-|..+|. |.+.|..+.|+..++.+++.+-||+||.||+.+.++-..++.|
T Consensus       355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P  433 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP  433 (893)
T ss_pred             eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence            99999999999999999999999999999999994 6788999999999999999999999999999998877666544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=135.81  Aligned_cols=149  Identities=22%  Similarity=0.375  Sum_probs=126.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .+.+|++++.|++..+.|.++|..+..+..  .+-.+++.+|+|+|.++.++ .|+.++|||+.++.  ....+++|.++
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~  391 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGP  391 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCc
Confidence            467899999999999999999998776654  23457899999999988765 68899999997763  56678899999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      |..++|+.+|.+++++++|+.|++||+|..+...++.  ...+++++.|.+.|.+++.+++|=+|.+++-.+.+..
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~  467 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT  467 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence            9999999999999999999999999999877665554  3457999999999999999999888888887766544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.84  E-value=3.2e-19  Score=127.32  Aligned_cols=150  Identities=21%  Similarity=0.373  Sum_probs=126.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC------CcEEEEEcCCCC-----CCCeE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN------PHIRLFDVNSSS-----PQPVM   72 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~-----~~~~~   72 (174)
                      ++..++||+.|.++++||+++|+++..++.. .+|..+.|++.+.++..+.|      +.+.++|++...     ..|.+
T Consensus        63 ~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   63 DSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             CcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence            4567999999999999999999999999855 57999999999887766543      457899997332     34566


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe--ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ....+.+++..+.|.+.+++|++|.+||.|..||.++......  ..|...|+++.++|+..++++++.|.+.++||+++
T Consensus       142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            6777889999999999999999999999999999998643322  24667999999999999999999999999999998


Q ss_pred             Ccce
Q 042260          151 NSCS  154 (174)
Q Consensus       151 ~~~~  154 (174)
                      -.+.
T Consensus       222 l~v~  225 (327)
T KOG0643|consen  222 LEVL  225 (327)
T ss_pred             eeeE
Confidence            7655

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.84  E-value=6.6e-19  Score=130.12  Aligned_cols=166  Identities=19%  Similarity=0.335  Sum_probs=139.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+||||+.+|.|+||+..++.....+......+.-+.|+|.+.++++ +.|+.+-+|.+..+  .....+.+|..++.
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCT  194 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcc
Confidence            5789999999999999999999998888766677999999998887655 47888999999875  33455788999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCee--------------------------------------------------
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--------------------------------------------------  112 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--------------------------------------------------  112 (174)
                      +-.|.|+|+.++++..||+|++||.++..+                                                  
T Consensus       195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            999999999999999999999999765321                                                  


Q ss_pred             ----------------------------------------------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260          113 ----------------------------------------------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus       113 ----------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                                                                    .+.+.+..+|..+.|.+ ..+|++++.||.|++|
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW  353 (399)
T ss_pred             CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence                                                          00123456688889988 7889999999999999


Q ss_pred             eCCCCcceeec-CcccceeEEEEEeec
Q 042260          147 DLTANSCSCEL-GLQYGLRTFLFYHQD  172 (174)
Q Consensus       147 d~~~~~~~~~~-~~~~~~~~~~~~~~~  172 (174)
                      |.++++++... .+++.+..|++.||.
T Consensus       354 DaRtG~l~~~y~GH~~~Il~f~ls~~~  380 (399)
T KOG0296|consen  354 DARTGQLKFTYTGHQMGILDFALSPQK  380 (399)
T ss_pred             eccccceEEEEecCchheeEEEEcCCC
Confidence            99999999997 588888899888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.2e-20  Score=133.18  Aligned_cols=146  Identities=27%  Similarity=0.486  Sum_probs=127.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++-++|+|+|++..+||+++|+.+..+.+|+...+.++-+|...+++++ .|.+.|+||.+ +....+..+++|+..|++
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-hhcceeeeecccccceeE
Confidence            5568999999999999999999999999999999999999988887765 57789999998 445667779999999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..|.-+ ..+++|+.|.+|++||++.- ....++...++++.++++..++.++.-..+..||+||++-.+
T Consensus       363 ~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  363 VVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             EEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            999864 46899999999999999763 345667778899999999988889988899999999998654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=8.6e-20  Score=131.97  Aligned_cols=148  Identities=23%  Similarity=0.446  Sum_probs=120.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC---CceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +..++.++|.|.++|+||.++-+....++.+ ..|.+.+++|-   ..+++++ .+.++++.|+.++.  ....+.+|+.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~sH~LsGHr~  189 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--FSHTLSGHRD  189 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--ceeeeccccC
Confidence            4457899999999999999999999888865 46999899984   3455555 35679999999884  4566789999


Q ss_pred             CEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe-eEEe---------------ecccCcEEEEEEccCCCEEEEeeCCCc
Q 042260           80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV-CQME---------------YESRAAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~-~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      .|.++.|+|... .++||+.||.||+||+|... |-..               ..+...++.++|.-++..+++.+.|..
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            999999998766 58899999999999998641 1111               123456899999999999999999999


Q ss_pred             EEEEeCCCCcce
Q 042260          143 IRVWDLTANSCS  154 (174)
Q Consensus       143 i~iwd~~~~~~~  154 (174)
                      +++|++.+++-.
T Consensus       270 ~r~wn~~~G~nt  281 (397)
T KOG4283|consen  270 IRVWNMESGRNT  281 (397)
T ss_pred             eEEeecccCccc
Confidence            999999988644

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.9e-19  Score=129.46  Aligned_cols=146  Identities=16%  Similarity=0.316  Sum_probs=124.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +..|+.+++||++++||+...+....++ +..++.+++|.+....++++.|+.|+.+|+.++...   ....|...+.++
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci  100 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCI  100 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcce---eeccCCCceEEE
Confidence            4457778899999999998886666665 667899999999888888889999999999886432   345689999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .+.+-...+++|+.|++|++||.|...+..++.....|.++..  .++.|+.|+.|..+.+||+++.....|
T Consensus       101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q  170 (323)
T KOG1036|consen  101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ  170 (323)
T ss_pred             EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh
Confidence            9998888999999999999999998777777777778888776  678899999999999999998766553

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.6e-19  Score=139.62  Aligned_cols=148  Identities=26%  Similarity=0.494  Sum_probs=126.7

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCc--eeEEe--------e-cCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGR--CYRTI--------Q-YPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQ   69 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~--------~-~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~   69 (174)
                      |+...++||||-|+.|++||++++.  .+.++        . ++...|.+++.++.+.++++++ .+.+++||.++.  .
T Consensus       127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~  204 (735)
T KOG0308|consen  127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--K  204 (735)
T ss_pred             ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc--c
Confidence            5677889999999999999999872  33332        1 4556799999999998877664 567999999887  4


Q ss_pred             CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      .+..+.+|+.+|..+-.+++|+.++++|+||+|++||++.++|+.++. |...|.++..+|+=..|.+|+.||.|..=|+
T Consensus       205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            566678999999999999999999999999999999999999998875 4566999999998889999999999999999


Q ss_pred             CCC
Q 042260          149 TAN  151 (174)
Q Consensus       149 ~~~  151 (174)
                      ++.
T Consensus       285 ~n~  287 (735)
T KOG0308|consen  285 RNP  287 (735)
T ss_pred             CCc
Confidence            984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.83  E-value=5e-19  Score=131.33  Aligned_cols=154  Identities=15%  Similarity=0.347  Sum_probs=122.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC-------------------------CceeEEeecCCCCeEEEEEcCCCceEEEecCCc
Q 042260            3 QPSVILATASYDKTIKFWEAKS-------------------------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH   57 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~   57 (174)
                      .++..+++||+|.+|++|+.++                         +.++-.+.+|..+|..+.|.+....+.++.|.+
T Consensus       203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHT  282 (423)
T KOG0313|consen  203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHT  282 (423)
T ss_pred             CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccce
Confidence            4567899999999999999321                         123455667888999999999877888889999


Q ss_pred             EEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCCC-
Q 042260           58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQT-  132 (174)
Q Consensus        58 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~-  132 (174)
                      |+.||+.+++....+  . -...+.++.+.+..++|++|+.|..+++||.|.+.   +..++ .|..-|.++.++|... 
T Consensus       283 Ik~WDletg~~~~~~--~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  283 IKVWDLETGGLKSTL--T-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF  359 (423)
T ss_pred             EEEEEeecccceeee--e-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence            999999988543332  2 34678999999999999999999999999998753   23333 5677899999999655 


Q ss_pred             EEEEeeCCCcEEEEeCCCCc-ceeecCc
Q 042260          133 ELISGDQNGNIRVWDLTANS-CSCELGL  159 (174)
Q Consensus       133 ~l~s~~~d~~i~iwd~~~~~-~~~~~~~  159 (174)
                      .|++|+.|+++++||+++.. -.|++..
T Consensus       360 ~~~S~S~D~t~klWDvRS~k~plydI~~  387 (423)
T KOG0313|consen  360 QLVSGSYDNTVKLWDVRSTKAPLYDIAG  387 (423)
T ss_pred             EEEEEecCCeEEEEEeccCCCcceeecc
Confidence            57899999999999999876 6676643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.83  E-value=1.8e-19  Score=141.99  Aligned_cols=147  Identities=21%  Similarity=0.397  Sum_probs=125.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      ..++|||+|.|+++|  +.+++..+...|...|+.+..-|.+.++.++.|..||+|...    ..+.++.+|+.-|.+++
T Consensus       113 ~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~----~~l~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  113 GTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG----TLLKTFSGHTDCVRGLA  186 (745)
T ss_pred             CceEecccccceEEe--cchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC----chhhhhccchhheeeeE
Confidence            348999999999999  456777788999999999999999999999999999999873    34566789999999999


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +-++ ..|+++++||.|++|++........+.|..-|.++...+++..++++++|++++||+..  .|.+.+++|.
T Consensus       187 vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt  259 (745)
T KOG0301|consen  187 VLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT  259 (745)
T ss_pred             EecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc
Confidence            8765 35899999999999999665555555677889999988899999999999999999998  7887777665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=2.2e-19  Score=129.96  Aligned_cols=135  Identities=23%  Similarity=0.402  Sum_probs=111.4

Q ss_pred             cCCCCeEEEEEcCC-CceE-EEecCCcEEEEEcCCC-CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           33 YPDSQVNRLEITPN-KHYL-AAAGNPHIRLFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        33 ~~~~~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      .++..|..++|+|. ..++ +++.|+++|+|+++.. ...+ .....|.+++++++|+.+|..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            35667999999994 4455 5678999999999764 3333 44557899999999999999999999999999999999


Q ss_pred             CeeEEeecccCcEEEEEEccCCC--EEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEE
Q 042260          110 PVCQMEYESRAAVNTVVLHPNQT--ELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF  168 (174)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  168 (174)
                      ......--|..+|.++.|-+..+  .|++||.|++|++||.+...-..++.+|..+-++=.
T Consensus       104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv  164 (347)
T KOG0647|consen  104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV  164 (347)
T ss_pred             CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc
Confidence            87766667888999999987665  899999999999999999888888777776654433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.83  E-value=6.5e-19  Score=132.74  Aligned_cols=149  Identities=24%  Similarity=0.399  Sum_probs=124.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ...+++++.|..|++|......+......|+.+|+.+..+|.|.++.++ .|+..-+.|++++.......-+...-.+++
T Consensus       273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts  352 (506)
T KOG0289|consen  273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS  352 (506)
T ss_pred             hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence            4467899999999999988888888888999999999999999887655 567788888888754333322223345889


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      .+|+|||..|++|..|+.++|||+.++.....| .|..+|..+.|+.||=.+++++.|+.|++||++.-+-
T Consensus       353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence            999999999999999999999999988876666 4678999999999999999999999999999997553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.9e-18  Score=119.66  Aligned_cols=158  Identities=24%  Similarity=0.410  Sum_probs=123.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce-----eEEeecCCCCeEEEEEcCC----CceEEEecCCcEEEEEcCCCCCCCeEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC-----YRTIQYPDSQVNRLEITPN----KHYLAAAGNPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~   73 (174)
                      .++.+|+|||+|++|++-..+...+     -..+..|++-|..++|-.+    +.++++++.+..+||--.-+.-++...
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            4788999999999999987654332     2456678889999999642    456666554444554443333366777


Q ss_pred             eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--------cCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260           74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--------RAAVNTVVLHPNQTELISGDQNGNIRV  145 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~d~~i~i  145 (174)
                      +.+|++.+.++ ++-++-+|++|+.|.+||+||++-..++.++..        .+.|.++++.|.++.|++|-.|....+
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            88999999886 455789999999999999999999888877632        257999999999999999999999999


Q ss_pred             EeCCCCcceeecCccc
Q 042260          146 WDLTANSCSCELGLQY  161 (174)
Q Consensus       146 wd~~~~~~~~~~~~~~  161 (174)
                      ||++-++..+.+-...
T Consensus       258 ydirg~r~iq~f~phs  273 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHPHS  273 (350)
T ss_pred             EEeeCCceeeeeCCCc
Confidence            9999999888764333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=6e-19  Score=141.32  Aligned_cols=149  Identities=16%  Similarity=0.394  Sum_probs=121.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.+|+|+|.|+|||+|++...+|+..|. |...|++++|+|.  ..++.++-|+.+|||++...+   +..+..-..-|+
T Consensus       380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lIT  455 (712)
T KOG0283|consen  380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLIT  455 (712)
T ss_pred             CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhhe
Confidence            4589999999999999999999999997 6678999999993  445666789999999997653   333444458899


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---------ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---------SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +++|.|+|+..+.|+-+|.+++|+.+..+.+..++         ....|+.+.|.|... .|++.+.|..|||+|.+...
T Consensus       456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~  535 (712)
T KOG0283|consen  456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD  535 (712)
T ss_pred             eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence            99999999999999999999999998766543321         123799999998655 48888999999999997766


Q ss_pred             ceeec
Q 042260          153 CSCEL  157 (174)
Q Consensus       153 ~~~~~  157 (174)
                      .++++
T Consensus       536 lv~Kf  540 (712)
T KOG0283|consen  536 LVHKF  540 (712)
T ss_pred             hhhhh
Confidence            55554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.7e-18  Score=131.30  Aligned_cols=161  Identities=21%  Similarity=0.416  Sum_probs=129.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc-------CCCCCCCeEEe
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV-------NSSSPQPVMSY   74 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~-------~~~~~~~~~~~   74 (174)
                      +++.+|+.|.--|.+++|.+.+|..+..+..|-..|+++.|+.++..+++ +.|+.+.+|++       ++....+...+
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            46777777779999999999999999888888888999999998877655 56889999986       23355777888


Q ss_pred             ecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEE--------------------------------------
Q 042260           75 DQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQM--------------------------------------  114 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~--------------------------------------  114 (174)
                      ..|.-.|+++...+.  ..+++|.|.|.++++||+.......                                      
T Consensus       171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence            999999999987654  4579999999999999975422100                                      


Q ss_pred             -------------------e-eccc--CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260          115 -------------------E-YESR--AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus       115 -------------------~-~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                                         . ..+.  .+|.|++++.+++.|++|+.||+|++||+...+|...+....++
T Consensus       251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp  321 (476)
T KOG0646|consen  251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP  321 (476)
T ss_pred             cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence                               0 0122  37999999999999999999999999999999998776633333

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.81  E-value=5.6e-19  Score=135.63  Aligned_cols=154  Identities=22%  Similarity=0.401  Sum_probs=117.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce-eEEeec-----CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-eec
Q 042260            5 SVILATASYDKTIKFWEAKSGRC-YRTIQY-----PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-YDQ   76 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-~~~   76 (174)
                      ...++|+|.||++|+||+++.+. ...++.     ....++.+.|++++++++++ .||.|.+||.......+... -++
T Consensus       281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A  360 (641)
T KOG0772|consen  281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA  360 (641)
T ss_pred             ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence            44688999999999999887653 333332     23357899999999988765 79999999986544333332 356


Q ss_pred             CCC--CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-eEEee---cccCcEEEEEEccCCCEEEEeeC------CCcEE
Q 042260           77 HTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-CQMEY---ESRAAVNTVVLHPNQTELISGDQ------NGNIR  144 (174)
Q Consensus        77 ~~~--~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~s~~~------d~~i~  144 (174)
                      |..  .++++.|+.+|++|++-+.|+++++||++..+ +...+   ...-+-..++|+|+...|++|++      .|++.
T Consensus       361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~  440 (641)
T KOG0772|consen  361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF  440 (641)
T ss_pred             cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence            776  89999999999999999999999999999754 22222   22345678999999999998753      35699


Q ss_pred             EEeCCCCcceeecC
Q 042260          145 VWDLTANSCSCELG  158 (174)
Q Consensus       145 iwd~~~~~~~~~~~  158 (174)
                      +||..+-..++++.
T Consensus       441 f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  441 FFDRMTLDTVYKID  454 (641)
T ss_pred             EEeccceeeEEEec
Confidence            99988887777754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.81  E-value=6.2e-18  Score=125.00  Aligned_cols=153  Identities=17%  Similarity=0.348  Sum_probs=132.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ...+++|||.|-...+|+..+|+.+..+.+|...|.++.|+.++.++++++ ++.+++|+..++.....  +...-..+.
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~--~~~e~~die  152 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK--LDQEVEDIE  152 (399)
T ss_pred             CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE--eecccCceE
Confidence            567899999999999999999999999999999999999999999999874 88999999988754333  334557788


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      -+.|+|.+..|++|+.||.+-+|.+.+. .+..-..+..++++=.|.|+|+.++++..||+|++||..+++-.+++.
T Consensus       153 Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  153 WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            9999999999999999999999999884 444444678899999999999999999999999999999987665543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.81  E-value=6.8e-19  Score=128.17  Aligned_cols=156  Identities=22%  Similarity=0.452  Sum_probs=127.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC------------------CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc
Q 042260            3 QPSVILATASYDKTIKFWEAKS------------------GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV   63 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~   63 (174)
                      .++.+++|||.|.+|||.|++.                  ...++++..|..+|+.+.|+|...++++ +.|+.+++||.
T Consensus       122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDf  201 (430)
T KOG0640|consen  122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDF  201 (430)
T ss_pred             CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEec
Confidence            4688999999999999999861                  1346777778889999999998777665 46889999999


Q ss_pred             CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeC
Q 042260           64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      .....+...+.-.....+.++.|.|.|.+++.|..-..+++||+++.+|-..-    ++...|+++.++++++.-++|+.
T Consensus       202 sK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  202 SKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             ccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence            65433332222234578999999999999999999999999999987664332    35678999999999999999999


Q ss_pred             CCcEEEEeCCCCcceeecC
Q 042260          140 NGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~~  158 (174)
                      ||.|+|||=-..+|+..+.
T Consensus       282 DG~IklwDGVS~rCv~t~~  300 (430)
T KOG0640|consen  282 DGAIKLWDGVSNRCVRTIG  300 (430)
T ss_pred             CCcEEeeccccHHHHHHHH
Confidence            9999999999999997763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.2e-18  Score=120.55  Aligned_cols=147  Identities=20%  Similarity=0.397  Sum_probs=126.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC--CceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC-CCCCCeEEeecCC
Q 042260            3 QPSVILATASYDKTIKFWEAKS--GRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS-SSPQPVMSYDQHT   78 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~   78 (174)
                      +.+++|++||.|.++-||.-..  .+++..+.+|+..|.+++|+++|.+|+++ -|..+=||.+.. .+..+...++.|.
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            4678999999999999997554  36788899999999999999999999875 577899998863 4556677788999


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCC-C--CeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-A--PVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~--~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ..|..+.|+|...+|+++|.|.+|++|+-. .  -.++.++. +...|.+++|+|.|..+++++.|++|+||-..
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            999999999999999999999999999876 2  34555664 45689999999999999999999999999966

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.3e-20  Score=145.25  Aligned_cols=166  Identities=27%  Similarity=0.476  Sum_probs=141.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..+++|+.|..+.+|.......+-++.+|+.+|.++.|+....+++++ .++.||+||+...  +.+.++.+|..++.
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~  116 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNIT  116 (825)
T ss_pred             cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcc
Confidence            35678999999999999988888888899999999999999987777665 6789999999866  44567789999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+.|+|-+.++++|+.|..+++||++.--|.+.+. +...+..+.|.|+|..+++|++|.++++||...++..-++....
T Consensus       117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e  196 (825)
T KOG0267|consen  117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE  196 (825)
T ss_pred             eeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence            99999999999999999999999999666666665 55678999999999999999999999999999998887766555


Q ss_pred             ceeEEEEEee
Q 042260          162 GLRTFLFYHQ  171 (174)
Q Consensus       162 ~~~~~~~~~~  171 (174)
                      .....+=+|+
T Consensus       197 ~~v~sle~hp  206 (825)
T KOG0267|consen  197 GKVQSLEFHP  206 (825)
T ss_pred             ccccccccCc
Confidence            5555554554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.81  E-value=2.6e-20  Score=139.31  Aligned_cols=157  Identities=25%  Similarity=0.445  Sum_probs=133.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +..|++|+.|..|++|++..++  .+.++.+..+.++.+.|.+++.. ++++.|+.+++|++...  ....++.+|..+|
T Consensus       187 sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkV  264 (459)
T KOG0288|consen  187 SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKV  264 (459)
T ss_pred             cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccce
Confidence            4579999999999999987766  45666677788999999988765 55567888999999766  4455677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +++.|......+++|+.|.++++||+.+..|..+....+.+++|+..  ...+++|..|++||+||++...+.++.+++.
T Consensus       265 t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg  342 (459)
T KOG0288|consen  265 TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG  342 (459)
T ss_pred             eeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc
Confidence            99999877767999999999999999999999988888889999986  5778999999999999999999999988777


Q ss_pred             ceeE
Q 042260          162 GLRT  165 (174)
Q Consensus       162 ~~~~  165 (174)
                      .+-+
T Consensus       343 ~vtS  346 (459)
T KOG0288|consen  343 RVTS  346 (459)
T ss_pred             ceee
Confidence            5433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.81  E-value=6.3e-18  Score=130.04  Aligned_cols=148  Identities=21%  Similarity=0.383  Sum_probs=122.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEE-eecCCCCEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMS-YDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~-~~~~~~~v~~~   84 (174)
                      .++|||.|.+|.+|+--.-+-..++..|...|+++.|+|+|.++++ +.|+++.+||-.+++....+. ..+|.+.|-++
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal  241 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL  241 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence            4899999999999986666667778888889999999999987765 579999999998875332222 34899999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEe--------------------------------------------ecccC
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--------------------------------------------YESRA  120 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--------------------------------------------~~~~~  120 (174)
                      .|+|+++.|+|++.|.++||||+.+.+++.+                                            ..|..
T Consensus       242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK  321 (603)
T KOG0318|consen  242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK  321 (603)
T ss_pred             EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence            9999999999999999999999865432111                                            12445


Q ss_pred             cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .|+++..+|++..|++|+.||.|.-||+..+.+.
T Consensus       322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            7999999999999999999999999999987654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.80  E-value=2.2e-18  Score=127.94  Aligned_cols=148  Identities=22%  Similarity=0.432  Sum_probs=124.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCcee----EEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCC------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCY----RTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSS------------   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~------------   66 (174)
                      ..+.++++|.|.++++|..+.++..    ..-++|...|.+++..+++..++ ++.|..++||+....            
T Consensus       158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence            3457999999999999998877643    22347888999999988877655 568999999993211            


Q ss_pred             -----------CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE
Q 042260           67 -----------SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        67 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  135 (174)
                                 ...++..+.+|+..|.++.|.+ ...+++++.|++|+.||+.+.....++..+...+++..+|....|+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence                       1245667889999999999987 7789999999999999999998888888889999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCc
Q 042260          136 SGDQNGNIRVWDLTANS  152 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~  152 (174)
                      +|+.|..||+||.+++.
T Consensus       317 ~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             ecCCCCceeecCCCCCC
Confidence            99999999999999863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.7e-18  Score=121.86  Aligned_cols=145  Identities=20%  Similarity=0.337  Sum_probs=122.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++..|++++.|-++++||..+|+.+.++..+...+..+.|... ...+.++  .|..||..++.++  +.+.-+.+|...
T Consensus        25 ~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~  102 (311)
T KOG1446|consen   25 DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKR  102 (311)
T ss_pred             CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCce
Confidence            5678899999999999999999999999988777888888754 4445444  4788999999887  557778999999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      |..++.+|-+..+++++.|++|++||+|...|+..+....+ ..++|.|+|=.+|++...+.|+|||++.-
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            99999999999999999999999999998888776654433 45689999998888887779999999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.79  E-value=1.5e-18  Score=133.28  Aligned_cols=117  Identities=20%  Similarity=0.394  Sum_probs=89.3

Q ss_pred             CCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEE----eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           36 SQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMS----YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        36 ~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      ..+++-+|+|.+  .++.++.|+++||||++..+.+....    ..+-+-.+..++|+++|++||+|+.||.|.+||.++
T Consensus       269 a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  269 AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS  348 (641)
T ss_pred             eeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence            356677788853  46777889999999997654332221    123345788999999999999999999999999865


Q ss_pred             CeeE--Eee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          110 PVCQ--MEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       110 ~~~~--~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..+.  ..+    .....|.++.|+++|++|++=+.|.++++||++...
T Consensus       349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  349 RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            3321  111    123579999999999999999999999999999753

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=9.3e-18  Score=126.68  Aligned_cols=146  Identities=21%  Similarity=0.370  Sum_probs=118.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      -..+|||||.|.||++||+.+|++..++..|..+|.++.|+|...  ++.++.|+++++.|.+...... ..+. -.+.|
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-~~wk-~~g~V  332 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-KEWK-FDGEV  332 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-ceEE-eccce
Confidence            356899999999999999999999999998999999999999643  4556679999999998532211 2222 35789


Q ss_pred             EEEEEeeC-CCEEEEecCCCcEEEEeCCCC-eeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260           82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAP-VCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ..++|.+. ...++.+..||.|+-+|+|.+ +++.+.. |..+|.++++++.- .++++++.|+.|++|++...
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            99999985 446777889999999999986 6666664 56789999999854 56788999999999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.79  E-value=5.8e-18  Score=133.66  Aligned_cols=144  Identities=24%  Similarity=0.446  Sum_probs=123.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +..++|||.|++||+|.  .++.+.++.+|..-|+++++-+++.+++++.|+.|++|++. +  ..+..+.+|++-+-++
T Consensus       151 e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g--e~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  151 ENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G--EVLLEMHGHTNFVYSI  225 (745)
T ss_pred             CCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C--ceeeeeeccceEEEEE
Confidence            34789999999999995  47889999999999999999999999999999999999994 3  4567788999999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      ....++..|+++++|++++||+..  .|...+.++. .|.++.+-+++. +++|++||.||+|-.+..+...+
T Consensus       226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~  295 (745)
T KOG0301|consen  226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASD  295 (745)
T ss_pred             EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCH
Confidence            988889999999999999999988  5555666554 789999988877 77888999999999986665543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=8.3e-18  Score=124.94  Aligned_cols=168  Identities=20%  Similarity=0.303  Sum_probs=125.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCC----------------CceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCC
Q 042260            4 PSVILATASYDKTIKFWEAKS----------------GRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNS   65 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~   65 (174)
                      ++.++++-+..|.|+|||+..                .+++.++..|...=.+++|+|.  |.++.+---..|++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            567889999999999999742                2356777777777789999994  3333222234689999877


Q ss_pred             CCCCC-eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260           66 SSPQP-VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        66 ~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      +.+.. ...+..|+..|..++|+|. ...|++||-||+|+|||+|..   .++.+-.+..-|+.|.|+...++|++|+.|
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd  323 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD  323 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence            65432 1224569999999999984 568999999999999999976   455555677889999999988899999999


Q ss_pred             CcEEEEeCCCCcc---eeecCcccceeEEEEEee
Q 042260          141 GNIRVWDLTANSC---SCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       141 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~  171 (174)
                      |+++|||++..+.   +.++..+-..++.+=.||
T Consensus       324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             ceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence            9999999996433   234444444555555553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.78  E-value=1.5e-17  Score=124.76  Aligned_cols=157  Identities=20%  Similarity=0.355  Sum_probs=121.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEec----------------------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG----------------------------   54 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~----------------------------   54 (174)
                      ++..++++++|+.+++|++...+..+++.+|...|+++.|..... .+.++.                            
T Consensus       230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~  309 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV  309 (459)
T ss_pred             CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence            566788999999999999999998888888888888777654332 222233                            


Q ss_pred             -----------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-----
Q 042260           55 -----------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-----  118 (174)
Q Consensus        55 -----------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----  118 (174)
                                 |+.||+||+++..  +....+. .+.|.++..+.++..+.+++.|..+.+.|+++..+..++..     
T Consensus       310 ~~~~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  310 CSISDVISGHFDKKVRFWDIRSAD--KTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC  386 (459)
T ss_pred             ecceeeeecccccceEEEeccCCc--eeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence                       4455555555442  2222223 35899999999999999999999999999999887776643     


Q ss_pred             cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260          119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus       119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      ....+.+.|+|++.++++||.||.|+||++.++++...+..+...
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            345889999999999999999999999999999998877544433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.78  E-value=1e-17  Score=119.33  Aligned_cols=164  Identities=20%  Similarity=0.418  Sum_probs=125.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++.-|++|+.|+++++|+++.+......  +.|...|..++|+|.  ..+.++++|..+++||++.++.  .... ..+.
T Consensus        31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~--~~~i-~~~~  107 (313)
T KOG1407|consen   31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC--TARI-ETKG  107 (313)
T ss_pred             cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE--EEEe-eccC
Confidence            4667999999999999999877543332  456667888889874  3455667899999999998743  3322 2345


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-----------------------------------------Eee-c
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-----------------------------------------MEY-E  117 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-----------------------------------------~~~-~  117 (174)
                      .-..+.|+|+|++++.+..|..|.+.|.++.+..                                         ..+ -
T Consensus       108 eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A  187 (313)
T KOG1407|consen  108 ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA  187 (313)
T ss_pred             cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc
Confidence            5667789999999999999999999998753221                                         111 1


Q ss_pred             ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-CcccceeEEEEEe
Q 042260          118 SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-GLQYGLRTFLFYH  170 (174)
Q Consensus       118 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  170 (174)
                      |+..+.||.|+|+|+++|+|+.|-.+.+||++.--|..-+ ++-..+++..|.|
T Consensus       188 H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  188 HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence            3456789999999999999999999999999998888776 4666677777766

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=2.1e-17  Score=120.33  Aligned_cols=106  Identities=20%  Similarity=0.328  Sum_probs=94.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.++||||.|.+|+|||.+....+..+..|.+.|+++.|.+.-   .+++++.|+.|.+|+...  +..+..+..|..+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~  129 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQ  129 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeeeecccccc
Confidence            57789999999999999999999999998899999999999764   788889999999999854  4667778899999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCe
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV  111 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~  111 (174)
                      |+.+++.|.+++-.+-+.|+.+++||+-+++
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            9999999999999999999999999985543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.4e-17  Score=119.56  Aligned_cols=150  Identities=18%  Similarity=0.335  Sum_probs=115.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+++||+|++|++||.++...+..+... ..|.++....+ .++++..+..+.+||++.........-..-..++.+++.
T Consensus       108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~  185 (323)
T KOG1036|consen  108 CVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL  185 (323)
T ss_pred             eEEEcccCccEEEEeccccccccccccC-ceEEEEeccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE
Confidence            5789999999999999976556555544 37888877643 567777899999999987643322222233567899999


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCC----eeEEeecc----------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAP----VCQMEYES----------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .|++.=++.++-||+|.+=.+...    .....|.-          -.+|++++|+|-...+++|+.||.|.+||+.+.+
T Consensus       186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence            998888999999999988777654    22222221          2479999999999999999999999999999998


Q ss_pred             ceeecC
Q 042260          153 CSCELG  158 (174)
Q Consensus       153 ~~~~~~  158 (174)
                      ..+++.
T Consensus       266 rl~q~~  271 (323)
T KOG1036|consen  266 RLKQLA  271 (323)
T ss_pred             hhhhcc
Confidence            887763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.77  E-value=1.1e-18  Score=128.03  Aligned_cols=145  Identities=26%  Similarity=0.496  Sum_probs=124.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++.++++|+.||.|++|.+++|.|++.+. .|...|+++.|+.++. +++++-|..+|+.-+.++  +.+..+.+|.+-|
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--K~LKEfrGHsSyv  351 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--KCLKEFRGHSSYV  351 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc--hhHHHhcCccccc
Confidence            45678999999999999999999999987 6777899999998765 556667889999999887  5567788999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~  150 (174)
                      ....|.++|..+++++.||+|++|+.++..|..+|..   ..+|+++...|.. +.++.+-...+|.|.++.-
T Consensus       352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            9999999999999999999999999999998888754   4679999998854 4567776777888888864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5.3e-17  Score=126.70  Aligned_cols=166  Identities=21%  Similarity=0.327  Sum_probs=134.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEE-eecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRT-IQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +..+.+|+.|+.|.++|++..+.... ...|...|.++.|++++..+++++ |+.+.|||....  .++..+..|...|.
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--EPKFTFTEHTAAVK  347 (484)
T ss_pred             CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--cccEEEeccceeee
Confidence            55789999999999999998877555 777888999999999999998765 678999999554  56677889999999


Q ss_pred             EEEEee-CCCEEEEe--cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE--eeCCCcEEEEeCCCCcceeec
Q 042260           83 AVGFQC-DGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS--GDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +++|+| ....||+|  +.|+.|++||..+...+........|.++.|++..+.+++  |-.+..|.||+..+......+
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l  427 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL  427 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence            999998 56678885  5699999999999998888888999999999998877765  345678999999987777666


Q ss_pred             CcccceeEEEEEeec
Q 042260          158 GLQYGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (174)
                      ..+..+.=++-..||
T Consensus       428 ~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPD  442 (484)
T ss_pred             cCCcceeEEEEECCC
Confidence            533333333333333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.76  E-value=2.5e-17  Score=119.30  Aligned_cols=148  Identities=16%  Similarity=0.306  Sum_probs=112.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc------------eeEEe---ecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGR------------CYRTI---QYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~------------~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~   66 (174)
                      .++++++|+.||.+.+||+++-.            |+...   ..|...|..+.|-|-  |.+..++-|.++|+||.++-
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            36789999999999999987643            11111   235567889999883  44444556999999999775


Q ss_pred             CCCCeEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCE-EEEeeCCC
Q 042260           67 SPQPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE-LISGDQNG  141 (174)
Q Consensus        67 ~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~s~~~d~  141 (174)
                      +  ....++ ..+.|-.-+++|   ...++++|..|-.|++.|+.++.+.+++ .|+..|.++.|+|.... |++|+.||
T Consensus       135 Q--~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg  211 (397)
T KOG4283|consen  135 Q--EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG  211 (397)
T ss_pred             e--eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence            3  333343 245677777776   3558999999999999999999988877 57789999999997775 67899999


Q ss_pred             cEEEEeCCCC-cce
Q 042260          142 NIRVWDLTAN-SCS  154 (174)
Q Consensus       142 ~i~iwd~~~~-~~~  154 (174)
                      .||+||++.. .|.
T Consensus       212 ~irlWDiRrasgcf  225 (397)
T KOG4283|consen  212 AIRLWDIRRASGCF  225 (397)
T ss_pred             eEEEEEeeccccee
Confidence            9999999975 344

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.76  E-value=2.8e-16  Score=112.44  Aligned_cols=149  Identities=17%  Similarity=0.329  Sum_probs=121.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .++.+|.|++.|.++.+|-..+|+.+.++.+|.+.|++++.+.+.. ++.++.|..+++||..+++  .+..++ -...|
T Consensus        20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk--~la~~k-~~~~V   96 (327)
T KOG0643|consen   20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK--QLATWK-TNSPV   96 (327)
T ss_pred             CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc--EEEEee-cCCee
Confidence            3678999999999999999889999999999999999999987655 4556688999999999984  344443 45789


Q ss_pred             EEEEEeeCCCEEEEecC-----CCcEEEEeCCCC-------eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           82 MAVGFQCDGNWMYSGSE-----DGTVKIWDLRAP-------VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      ..+.|+.+|++++....     -+.|.++|++..       .+...+ .....++...|.|-+..+++|.+||.|.+||.
T Consensus        97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da  176 (327)
T KOG0643|consen   97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDA  176 (327)
T ss_pred             EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEc
Confidence            99999999998777654     467999999843       222222 34578999999999999999999999999999


Q ss_pred             CCCcce
Q 042260          149 TANSCS  154 (174)
Q Consensus       149 ~~~~~~  154 (174)
                      +++...
T Consensus       177 ~~g~~~  182 (327)
T KOG0643|consen  177 RTGKEL  182 (327)
T ss_pred             ccCcee
Confidence            997433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.76  E-value=3.5e-18  Score=126.40  Aligned_cols=148  Identities=22%  Similarity=0.382  Sum_probs=121.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ..+|++|+.|++|.+||.+++..+..+... -.-+.++|+|.+..+++ ..|..+..||.+.-. .++..+..|.+.|.+
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~d  277 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMD  277 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhc-ccchhhcccceeEEE
Confidence            347899999999999999999998877643 35678999996655554 467889999987643 455667789999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +.|+|.|+.|++||.|.+|+||..+.....-.+.  ..+.|.++.|+.+..++++||.|+.||+|.-++.+.+
T Consensus       278 VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  278 VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             eccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            9999999999999999999999998765443333  3467999999999999999999999999998875433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.4e-17  Score=115.78  Aligned_cols=150  Identities=19%  Similarity=0.302  Sum_probs=123.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCC---ceeEEeecCCCCeEEEEEcC--CCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKSG---RCYRTIQYPDSQVNRLEITP--NKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++.|+|++.|++||||.++++   +.+.++.+|.++|+.++|..  -|.+|++ +.|+++-||.-..+.......+..|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            457999999999999998764   45788899999999999875  5777775 47999999999888777777788899


Q ss_pred             CCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCC-e---eEEeecccCcEEEEEEccC---C-----------CEEEEee
Q 042260           79 NNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAP-V---CQMEYESRAAVNTVVLHPN---Q-----------TELISGD  138 (174)
Q Consensus        79 ~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~-~---~~~~~~~~~~v~~~~~~~~---~-----------~~l~s~~  138 (174)
                      ..|.+++|-|+  |-.|+.++.||.|.+.+.+.. .   ....+-|...|+++++.|.   +           ..|++|+
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            99999999986  557999999999999998764 1   1122346678999999986   3           3599999


Q ss_pred             CCCcEEEEeCCCCcce
Q 042260          139 QNGNIRVWDLTANSCS  154 (174)
Q Consensus       139 ~d~~i~iwd~~~~~~~  154 (174)
                      .|..|+||+..+.+..
T Consensus       183 cDn~VkiW~~~~~~w~  198 (299)
T KOG1332|consen  183 CDNLVKIWKFDSDSWK  198 (299)
T ss_pred             CccceeeeecCCcchh
Confidence            9999999999987433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=2.6e-17  Score=124.72  Aligned_cols=153  Identities=17%  Similarity=0.344  Sum_probs=125.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++++|++|+.|..|.|||.++.+.+..++.|...|.+++|-.. ..+++++.|+.+++|+++...  .+.++=+|+..|
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v  289 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGV  289 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH--HHHHHhCCccce
Confidence            47889999999999999999999999999999999999999864 457778889999999997653  333445799999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .++....-++.+-.|+.|+++++|++..........+...+.|++|. +...+++|+.||.|.+|++-.++-++...
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence            99998888887777889999999999543333323445688999886 56779999999999999999887665543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=5.2e-17  Score=129.48  Aligned_cols=150  Identities=19%  Similarity=0.342  Sum_probs=131.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|+.+--|.+++||-+.+-+-..++.+|.-+|.++..+|++.+++++ .|..+++|-++=+.  +-..+-+|...|
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHdDSv  595 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHDDSV  595 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--hhhhhhcccCce
Confidence            468899999999999999999999999999999999999999998887764 68899999998774  333445799999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .++.|.|...++.|++.|+.|+-||-.....+.++ .|...|.+++..|+|.+++++|.|.+||+|........
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence            99999999999999999999999998877666555 56788999999999999999999999999998875433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.8e-16  Score=110.42  Aligned_cols=143  Identities=22%  Similarity=0.464  Sum_probs=120.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeec--C-----CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeec
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQY--P-----DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +-++++||.|.+||+||++-..++..+..  +     .+.|..++..|.|.+++++ .|...-+||++.+  ..+..+..
T Consensus       194 ~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq~f~p  271 (350)
T KOG0641|consen  194 GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQRFHP  271 (350)
T ss_pred             CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceeeeeCC
Confidence            45789999999999999998888877642  2     2568899999999999887 5667899999987  44556778


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-----eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-----CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      |...|.++.|+|...++.||+.|..|++-|+....     .+..-+++..+-.+.|+|++-.+++.+.|+++.+|-++
T Consensus       272 hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  272 HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999999999999999999987532     23334677888889999999999999999999999764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=7.7e-17  Score=128.53  Aligned_cols=140  Identities=20%  Similarity=0.382  Sum_probs=123.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ...||.|-.||.|++|+..++.....+.+|..+|+.+.|...|..++++ .|+.|-+||+-..  .....+.+|+..++.
T Consensus        77 ~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~rL~GHkd~iT~  154 (888)
T KOG0306|consen   77 ILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLFRLRGHKDSITQ  154 (888)
T ss_pred             cceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeEEeecchHHHhH
Confidence            4457999999999999999998899999999999999999998877765 6888999999654  345668899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      .-|....+++++.|.|+.|++||+.++.|..+. .++..|..+++++  +.+++++.|+.+++|++
T Consensus       155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL  218 (888)
T ss_pred             HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence            999888899999999999999999998887665 6788999999977  77888999999999999

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.74  E-value=3.2e-18  Score=121.43  Aligned_cols=164  Identities=19%  Similarity=0.317  Sum_probs=138.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ..+-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+....+.+....++ +.|-+.++||.-++..  +..+ .|.--|
T Consensus        27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf-~hkhiv  103 (334)
T KOG0278|consen   27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF-EHKHIV  103 (334)
T ss_pred             CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh-hhhhee
Confidence            46778999999999999999999999999999999999988877555443 4577889999987732  3333 477789


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      .+++|+.+.++|+||+.+..+||+|++++... .++ .+...|..+.|...++.+++.+.|++||+||.+++..+..+..
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~  183 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF  183 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence            99999999999999999999999999987643 223 4677899999999999999999999999999999999999998


Q ss_pred             ccceeEEEEE
Q 042260          160 QYGLRTFLFY  169 (174)
Q Consensus       160 ~~~~~~~~~~  169 (174)
                      ++.+.++=+.
T Consensus       184 ~s~VtSlEvs  193 (334)
T KOG0278|consen  184 NSPVTSLEVS  193 (334)
T ss_pred             CCCCcceeec
Confidence            8888765443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.74  E-value=1.1e-16  Score=131.42  Aligned_cols=158  Identities=20%  Similarity=0.315  Sum_probs=128.3

Q ss_pred             CcEEEEEee--CCCcEEEEECCC------------CceeEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCC---
Q 042260            4 PSVILATAS--YDKTIKFWEAKS------------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNS---   65 (174)
Q Consensus         4 ~~~~l~s~s--~D~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~---   65 (174)
                      ++..++|||  .|+.+++|+.+.            .+.+.....|.+.|+++.|+|+|.++++|+|+ .+-+|....   
T Consensus        24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~  103 (942)
T KOG0973|consen   24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS  103 (942)
T ss_pred             CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence            566799999  999999998531            22345556688899999999999999987654 578998762   


Q ss_pred             -------------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCC
Q 042260           66 -------------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQ  131 (174)
Q Consensus        66 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~  131 (174)
                                   ..++....+.+|...|..++|+|++.++++++.|++|.+|+.++......+ .|...|-.+.|.|-|
T Consensus       104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G  183 (942)
T KOG0973|consen  104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG  183 (942)
T ss_pred             cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence                         012345667889999999999999999999999999999999988776666 467789999999999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260          132 TELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +++|+-+.|++|++|+..+-.+.-.++-+.
T Consensus       184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  184 KYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             CeeeeecCCceEEEEEcccceeeEeeccch
Confidence            999999999999999988765554444333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.9e-16  Score=119.14  Aligned_cols=151  Identities=20%  Similarity=0.256  Sum_probs=121.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++|++|||++.|.|..+|++-.-.   ...+...|..+|.-+.|+|+..+++++ -+..+++||..++....... .++.
T Consensus       234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~  312 (519)
T KOG0293|consen  234 HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLG  312 (519)
T ss_pred             CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcC
Confidence            578999999999999999865433   366677888899999999988776654 56679999999885443332 2356


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ..+.+++|.|+|..+++|+.|+.+..||+.......... ....|.++++.++|..+++.+.|..|++++.++..+.
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr  389 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR  389 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence            789999999999999999999999999998654322222 2356999999999999999999999999999976544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=2.6e-17  Score=120.50  Aligned_cols=144  Identities=24%  Similarity=0.419  Sum_probs=123.8

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcC----CCC--------------
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVN----SSS--------------   67 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~----~~~--------------   67 (174)
                      ++.++|.|.+.+||.+++|.|+..+.+|.+.|+++.|++++.++.+ ++|+...||...    .++              
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            7899999999999999999999999999999999999999887654 578889999621    000              


Q ss_pred             --------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEE
Q 042260           68 --------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVV  126 (174)
Q Consensus        68 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~  126 (174)
                                          ..++..+.+|...|.+..|-..|+.++|++.|.+-.+||++++..+..+ .|....+-++
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs  321 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS  321 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence                                0133446678899999999999999999999999999999999887666 4667788889


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCC
Q 042260          127 LHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       127 ~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      -+|+.+.+++.+.|.+.|+||++.
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchh
Confidence            999999999999999999999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=7e-17  Score=121.40  Aligned_cols=147  Identities=20%  Similarity=0.353  Sum_probs=116.1

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ..+++.+++...|..+++++.++..+...+.. +.+|++...+.+++++... .+..+++||++..  ..+..|.+|+..
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~--~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEEN--KLVRKYFGHKQG  439 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchh--hHHHHhhccccc
Confidence            45677888888999999999887666655544 4579999999999886654 6788999999844  555667777654


Q ss_pred             --EEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCC
Q 042260           81 --VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        81 --v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~  151 (174)
                        +..-+|-. +..++++||+|+.|+||+..+.+.+.++. |...|++++++|..+ ++|+||.||+||||.....
T Consensus       440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence              33334543 55799999999999999999998887774 567899999999664 6899999999999998754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2e-16  Score=116.34  Aligned_cols=146  Identities=19%  Similarity=0.462  Sum_probs=118.3

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--Cc-eEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v   81 (174)
                      ..+|++-..|+|++||..+++.++.++.++..++.+.|...  .. +++++.||.||+||++.........+..+. ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            46888888999999999999999999999888888888763  33 445667999999999987766666666665 567


Q ss_pred             EEEEEeeCCCEEEEecC----CCcEEEEeCCCCee-EEee--cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260           82 MAVGFQCDGNWMYSGSE----DGTVKIWDLRAPVC-QMEY--ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+++.++.++.+++|..    |-.|.+||+|.... +..+  .|..-|+++.|+|+. +.|++||.||-|.++|++..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            77787778888888854    77899999997654 3322  467889999999965 56889999999999999965

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=6.5e-16  Score=112.68  Aligned_cols=159  Identities=18%  Similarity=0.294  Sum_probs=127.9

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      -|++|+.||.|.+|+....+++.+++.|..+|+.++.+|.+++. +.++|..+++|++-.++...+..+.   .....+.
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~  175 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVS  175 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---CcceeeE
Confidence            47899999999999999999999999999999999999999874 4567889999999776544444332   3344489


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-Cccccee
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-GLQYGLR  164 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~  164 (174)
                      |++.|.+|+-++.+ .|-+|.+...........+.++.++.|. +++.|++|+.|+.|++||-....+.+.+ -+...+.
T Consensus       176 w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK  253 (362)
T KOG0294|consen  176 WSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK  253 (362)
T ss_pred             EcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence            99999988888777 5899999876655555555566776664 5788999999999999999998888886 4667777


Q ss_pred             EEEEEe
Q 042260          165 TFLFYH  170 (174)
Q Consensus       165 ~~~~~~  170 (174)
                      .+.+|.
T Consensus       254 ~i~~~~  259 (362)
T KOG0294|consen  254 DIASYT  259 (362)
T ss_pred             eeEEEe
Confidence            777664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.71  E-value=2.1e-16  Score=127.18  Aligned_cols=142  Identities=23%  Similarity=0.391  Sum_probs=121.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++.++|++.||.+++||.++...+..++.. ..+..+..+....+++. .+|-.|+++|..+.  ..+..+.+|.+++++
T Consensus       505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~--kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  505 NRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVTR--KVVREFWGHGNRITD  581 (910)
T ss_pred             CceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchhh--hhhHHhhccccceee
Confidence            567999999999999999998888777754 45777878876666554 46678999999765  345567899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC-CcEEEEeCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN-GNIRVWDLT  149 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~iwd~~  149 (174)
                      ++|+|+|+++++++.|++||+||+.+..++-.+....++.++.|+|++.+||++..| ..|.+|-=.
T Consensus       582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999999999999999999999999999988888888999999999999999999988 569999644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=5.9e-16  Score=117.45  Aligned_cols=157  Identities=17%  Similarity=0.313  Sum_probs=123.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      -|.+++.|+++++|+++....+.++.+|+..|.++....-...++.+ -|.++++|++...   ..+.+.++.+.+-+++
T Consensus       258 ~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~  334 (479)
T KOG0299|consen  258 ELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVA  334 (479)
T ss_pred             ceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc---ceeeeeCCCCCeeeEE
Confidence            47899999999999999888888888999999998776666666555 6999999999443   3445678888899999


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--c-----------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--S-----------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~-----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      |-. ...|++|+.+|.|.+|++-+.+++.+..  |           +.-|++++..|....+++|+.+|.||+|.++.+.
T Consensus       335 ~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  335 FIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             Eec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence            864 5679999999999999997766555432  1           1158899999999999999999999999999883


Q ss_pred             c----eeecCcccceeEEE
Q 042260          153 C----SCELGLQYGLRTFL  167 (174)
Q Consensus       153 ~----~~~~~~~~~~~~~~  167 (174)
                      .    .+++++..-++..-
T Consensus       414 r~i~~l~~ls~~GfVNsl~  432 (479)
T KOG0299|consen  414 RAINLLYSLSLVGFVNSLA  432 (479)
T ss_pred             cccceeeecccccEEEEEE
Confidence            3    34455444444433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.9e-15  Score=114.90  Aligned_cols=159  Identities=16%  Similarity=0.348  Sum_probs=123.2

Q ss_pred             EEEEEeeCCCc-EEEEECCCCceeEEeecC-------------------------------------------CCCeEEE
Q 042260            6 VILATASYDKT-IKFWEAKSGRCYRTIQYP-------------------------------------------DSQVNRL   41 (174)
Q Consensus         6 ~~l~s~s~D~~-v~vwd~~~~~~~~~~~~~-------------------------------------------~~~v~~~   41 (174)
                      .++.+++.|.. +.+||+++|.....++..                                           ++++.++
T Consensus         8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen    8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence            34555666766 899999887655444332                                           1357788


Q ss_pred             EEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---------Ce
Q 042260           42 EITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---------PV  111 (174)
Q Consensus        42 ~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---------~~  111 (174)
                      +-+|.|.+++++ ..+.+++|.+.++..  +..+.+|=..++++.|+.||.+|+||+.||.|++|++-.         .+
T Consensus        88 ~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             ecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            888999998887 788999999999854  444578888999999999999999999999999999632         33


Q ss_pred             eEEee-cccCcEEEEEEccCC--CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEE
Q 042260          112 CQMEY-ESRAAVNTVVLHPNQ--TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF  166 (174)
Q Consensus       112 ~~~~~-~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  166 (174)
                      ....| .|.-+|.++.+.+.+  ..|+++|.|.++++||+..+..+.....++...+.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av  223 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAV  223 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeE
Confidence            34444 456789999887753  57999999999999999999888776666655444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.7e-15  Score=123.03  Aligned_cols=148  Identities=16%  Similarity=0.301  Sum_probs=123.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-----eec
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-----YDQ   76 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-----~~~   76 (174)
                      .++..+|.||.|-.||+-+..+......++.|+++|.++.++|.+.+++++ .||.+++||+.++.......     ...
T Consensus       106 g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~  185 (933)
T KOG1274|consen  106 GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF  185 (933)
T ss_pred             cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence            356789999999999999999998899999999999999999999988765 79999999998764321111     111


Q ss_pred             C-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           77 H-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        77 ~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      . ...+..++|+|++..++..+.|+.|++++.........+.   ..+.+.++.|+|+|.+||+++-||.|.+||+++
T Consensus       186 ~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  186 ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            2 3456788999999999999999999999999887766653   244599999999999999999999999999994

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.6e-16  Score=112.43  Aligned_cols=153  Identities=23%  Similarity=0.356  Sum_probs=119.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCC-CCCCeEEeecC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSS-SPQPVMSYDQH   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~-~~~~~~~~~~~   77 (174)
                      .+.+||++++||.|.||.-++|+-  ......|+..|++++|.|.  +.+|+ ++.|+.|.+.+.++. .........+|
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            477999999999999999877742  4445568889999999986  44444 568999999998765 45555556789


Q ss_pred             CCCEEEEEEeeC---C-----------CEEEEecCCCcEEEEeCCCCeeEE--ee-cccCcEEEEEEccCC----CEEEE
Q 042260           78 TNNVMAVGFQCD---G-----------NWMYSGSEDGTVKIWDLRAPVCQM--EY-ESRAAVNTVVLHPNQ----TELIS  136 (174)
Q Consensus        78 ~~~v~~~~~~~~---~-----------~~l~t~~~dg~v~iwd~~~~~~~~--~~-~~~~~v~~~~~~~~~----~~l~s  136 (174)
                      .-.|.+++|.|-   |           +.|++|+.|..|+||+......+.  ++ .|..-|.++++.|.-    ..+++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            999999999874   4           679999999999999998753221  12 456779999999964    46899


Q ss_pred             eeCCCcEEEEeCCCCcceee
Q 042260          137 GDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       137 ~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +++||++.||-.+.....++
T Consensus       229 ~SqDg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             ecCCCcEEEEEecCccCccc
Confidence            99999999999885434443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=1.8e-16  Score=117.49  Aligned_cols=146  Identities=18%  Similarity=0.358  Sum_probs=115.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCC-------------------
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS-------------------   67 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-------------------   67 (174)
                      .++||+.||.|++||+.+-++...++.|.+.|.++++.. +.++.++.|.+++.|-+...-                   
T Consensus        81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN  159 (433)
T ss_pred             hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence            479999999999999999999999999999999999987 567777778888888643210                   


Q ss_pred             -----------------CCCeEEeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc
Q 042260           68 -----------------PQPVMSYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP  129 (174)
Q Consensus        68 -----------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  129 (174)
                                       ..|+..+.--...+.++.|+|... .|++|++|+.|.++|+|+..+.........-+.|+|+|
T Consensus       160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP  239 (433)
T KOG0268|consen  160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP  239 (433)
T ss_pred             ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence                             011111222235677888888544 57778899999999999988877777777889999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcc
Q 042260          130 NQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ..-.+.+|.+|-.+..+|++.-..
T Consensus       240 eafnF~~a~ED~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  240 EAFNFVAANEDHNLYTYDMRNLSR  263 (433)
T ss_pred             cccceeeccccccceehhhhhhcc
Confidence            777788899999999999997543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.69  E-value=3.5e-16  Score=122.88  Aligned_cols=156  Identities=24%  Similarity=0.351  Sum_probs=116.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce------eEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC------YRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      +.+++|+.+..||.|.++|.+.-+.      +.....|...|-++.|-|... ++.+++|.++|+||+.+.+......+-
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            4578999999999999999765322      344556888899999999444 445568899999999988766665577


Q ss_pred             cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-------------EEe--------------e-cccCcEEE--
Q 042260           76 QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-------------QME--------------Y-ESRAAVNT--  124 (174)
Q Consensus        76 ~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-------------~~~--------------~-~~~~~v~~--  124 (174)
                      +|...+.+++|.+ +...|++|+.||.+.|||++-...             ..+              . -+...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            8999999999998 566899999999999999863210             000              0 01112333  


Q ss_pred             -EEEccCCCEEEEeeC-CCcEEEEeCCCCcceeecC
Q 042260          125 -VVLHPNQTELISGDQ-NGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       125 -~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~  158 (174)
                       +.+..|+..||+++. |+.|++||++...+.+.++
T Consensus       222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e  257 (720)
T KOG0321|consen  222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE  257 (720)
T ss_pred             EEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence             444456777888776 9999999999998887754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=9.5e-16  Score=114.74  Aligned_cols=144  Identities=17%  Similarity=0.335  Sum_probs=114.6

Q ss_pred             EEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260            6 VILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +.|||||.|.+|+||++-.+       +.+..+.+|...|..+.|+|.  +.+++++.|..+.+|++.+++  ....+. 
T Consensus        95 ~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-  171 (472)
T KOG0303|consen   95 CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-  171 (472)
T ss_pred             ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-
Confidence            47999999999999996433       346667788889999999995  456777889999999998884  344455 


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEe---eCCCcEEEEeCCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISG---DQNGNIRVWDLTAN  151 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~  151 (174)
                      |...|.++.|+.+|.+++|++.|..|||||.++...+..-  +.+.......|..++..+.+|   .++.++-+||-.+-
T Consensus       172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence            9999999999999999999999999999999998876554  223445666777788844444   35778999998864


Q ss_pred             c
Q 042260          152 S  152 (174)
Q Consensus       152 ~  152 (174)
                      +
T Consensus       252 ~  252 (472)
T KOG0303|consen  252 E  252 (472)
T ss_pred             c
Confidence            4

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.6e-15  Score=116.69  Aligned_cols=162  Identities=17%  Similarity=0.271  Sum_probs=128.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.-|.|.+.+|+|.-||+.+++.........+.|++++.+|.+..++.+ .|+.+..++...+.......+...++.+.+
T Consensus        80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            4468899999999999999999999998888899999999988776655 777777777777665555566667899999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----c----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----S----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----~----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +.|++++..+++|+.||.|++||..++...+...     .    ..=|.++.+. ....+++|.+.|+|++||...+...
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchh
Confidence            9999999999999999999999998876655211     1    1125677776 4567999999999999999998877


Q ss_pred             eecC-cccceeEEE
Q 042260          155 CELG-LQYGLRTFL  167 (174)
Q Consensus       155 ~~~~-~~~~~~~~~  167 (174)
                      +.+. ++.++.+++
T Consensus       239 qS~~~h~adVl~La  252 (691)
T KOG2048|consen  239 QSHSCHDADVLALA  252 (691)
T ss_pred             hhhhhhhcceeEEE
Confidence            6653 555555544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.68  E-value=2.7e-16  Score=120.94  Aligned_cols=146  Identities=18%  Similarity=0.338  Sum_probs=121.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCcee--EEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .+++.|++|+.-.++-|||+......  ..+......+..++.+|+.++ |++..|+.|.|||++..  ..+..+++|+.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtD  552 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTD  552 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCC
Confidence            46778999999999999998765442  223333345778999998765 55568999999999876  55677899999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .+.++.++++|..|.||+-|.+||.||+|...........+.|.++.++|++.-|+.|-+++.+-+--.+.
T Consensus       553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence            99999999999999999999999999999887766667788999999999999999999999887766553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.68  E-value=2.5e-15  Score=110.15  Aligned_cols=169  Identities=25%  Similarity=0.414  Sum_probs=125.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCC-----CCeEEEEEcCCCceEEEecCCcEEEEEc-CCCCC---------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD-----SQVNRLEITPNKHYLAAAGNPHIRLFDV-NSSSP---------   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~---------   68 (174)
                      +..++++.+.|.-|++||..+|+...++..-+     ....+++|+|+|..+.++....||+||. +.+..         
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence            34578899999999999999999988876422     2356899999999999999999999998 33211         


Q ss_pred             ---------------------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCC
Q 042260           69 ---------------------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLR  108 (174)
Q Consensus        69 ---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~  108 (174)
                                                             .++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||+|
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence                                                   112223367889999999999999999876 6789999998


Q ss_pred             CCee-EEeec-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecCcccceeEEEEEeecC
Q 042260          109 APVC-QMEYE-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       109 ~~~~-~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  173 (174)
                      ...- +..+.     ..++|. ....|+++.|++|+.||.|++||++. +..+.-+.++++-.--+..||-|
T Consensus       282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  282 YSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             hccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence            6432 22221     122332 23458899999999999999999997 66666666666665566666655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=3.1e-14  Score=106.08  Aligned_cols=147  Identities=11%  Similarity=0.176  Sum_probs=111.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .+++|++.|+.+++||+.+++.+..+..+. .+..++|+|++..+ ++ ..++.+++||..+++.  ...+..+ ..+..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSG-PDPEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCC-CCccE
Confidence            478899999999999999999888887554 46789999998754 33 3567899999987643  2223333 33567


Q ss_pred             EEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCCcceee
Q 042260           84 VGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG-NIRVWDLTANSCSCE  156 (174)
Q Consensus        84 ~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~  156 (174)
                      ++++++++.++. ++.|+.+++||+++......+.....+.+++++|++..+++++.++ .+..||.++.+....
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            789999987654 5668999999999877666666555678899999999998887765 467789987766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4.4e-15  Score=108.78  Aligned_cols=168  Identities=21%  Similarity=0.367  Sum_probs=125.8

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEc---CCC---CCCCeEEe
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV---NSS---SPQPVMSY   74 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~---~~~---~~~~~~~~   74 (174)
                      |+.+.+|+|++.|-+|.+|+++ |+.+..+......-...+.+|+|.++++++ ...+++|..   ..+   +......+
T Consensus       196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L  274 (420)
T KOG2096|consen  196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL  274 (420)
T ss_pred             cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence            5678899999999999999999 999999887666667889999999988764 667999986   222   23445667


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-------CeeEEee-----cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-------PVCQMEY-----ESRAAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      .+|...|...+|+++.+.++|.|.||.+|+||+.-       ++...+.     ........+.++|++..|+.. ...+
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~  353 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSD  353 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCc
Confidence            89999999999999999999999999999999753       2222222     123445699999999987755 3457


Q ss_pred             EEEEeCCCCcceeec-CcccceeEEEEEee
Q 042260          143 IRVWDLTANSCSCEL-GLQYGLRTFLFYHQ  171 (174)
Q Consensus       143 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~  171 (174)
                      ++++.-+++...-++ .....-++-+.|.+
T Consensus       354 l~~~~se~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  354 LKVFASEDGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             eEEEEcccCccchhHHHhhcCceeeEEecC
Confidence            999999987654333 23333344444433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=8.8e-16  Score=109.73  Aligned_cols=144  Identities=16%  Similarity=0.260  Sum_probs=108.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCc----------eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCC--CCCCeE
Q 042260            6 VILATASYDKTIKFWEAKSGR----------CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSS--SPQPVM   72 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~--~~~~~~   72 (174)
                      .+++.|-.+|.+.+||+.++.          .+.....|..+|.++.+.+.. .=+.++.+..+-.|.++-.  ..+.-.
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            457788889999999998873          333344567789999887642 2244555667778877533  222222


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ...-.+..+..+.+-+|++.+||++.|+++|+|.-++......+ .|...|++++|+|+.+.+|+++.|+.|.+|++.
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence            22334566888899999999999999999999999886655433 456889999999999999999999999999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.66  E-value=3.9e-15  Score=122.49  Aligned_cols=148  Identities=16%  Similarity=0.294  Sum_probs=122.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC--------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP--------------   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~--------------   68 (174)
                      +..+|+++|.|++|.+|+..+.+.+..++.|.+.|-++.|.|.|+++++ ++|+.+++|...+-+.              
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~  219 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT  219 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence            5679999999999999999999999999999999999999999999987 5678999998532110              


Q ss_pred             ------------------------------------CCeEEeecCCCCEEEEEEee-----CCC------------EEEE
Q 042260           69 ------------------------------------QPVMSYDQHTNNVMAVGFQC-----DGN------------WMYS   95 (174)
Q Consensus        69 ------------------------------------~~~~~~~~~~~~v~~~~~~~-----~~~------------~l~t   95 (174)
                                                          ..-..+-+|...+.+++|+|     +.+            .+|+
T Consensus       220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av  299 (942)
T KOG0973|consen  220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV  299 (942)
T ss_pred             ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence                                                00112337889999999987     122            5788


Q ss_pred             ecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           96 GSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        96 ~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      |+.|+++-||....+++.....  ....|.++.|+|+|..|+++|.||+|.+..++..
T Consensus       300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            9999999999998777665443  3678999999999999999999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.6e-14  Score=112.93  Aligned_cols=149  Identities=17%  Similarity=0.327  Sum_probs=125.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce-eEEeecC-CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRC-YRTIQYP-DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +..||.+-.||.|-+|++..+=. ...+.++ +..|.+++|.+.+.+++++.++.|.-||+.+.  ++...++...+.+.
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IW  114 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIW  114 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEecCCCccee
Confidence            34589999999999999987644 3344443 56799999999999999999999999999876  45666777889999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      +++.+|.+..++-|+.||.+.+.+....+.....   ...++|.++.|+|++..++.|+.||.|++||...+..+.
T Consensus       115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            9999999999999999998888888877665433   235789999999999999999999999999999988776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.66  E-value=1.8e-15  Score=114.88  Aligned_cols=145  Identities=21%  Similarity=0.329  Sum_probs=112.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc----eeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCC--------
Q 042260            5 SVILATASYDKTIKFWEAKSGR----CYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQP--------   70 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~--------   70 (174)
                      ..++|+|..-|+|-+||+.+.+    .+..+..|..+|.++.|+|.+  .+++++.||.||+-|++......        
T Consensus       200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~  279 (498)
T KOG4328|consen  200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN  279 (498)
T ss_pred             ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence            4689999999999999995322    355666788899999999964  56777788888888775321100        


Q ss_pred             --------------e---------------------EEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe---
Q 042260           71 --------------V---------------------MSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV---  111 (174)
Q Consensus        71 --------------~---------------------~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~---  111 (174)
                                    +                     ..+.-|..+|..++++| +..+++|++.|++.+|||+|+..   
T Consensus       280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence                          0                     01123567899999998 56689999999999999998522   


Q ss_pred             --eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          112 --CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       112 --~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                        .+.++.|+..|++..|+|.+-.|++.+.|..||+||..
T Consensus       360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence              24566788999999999988889999999999999995

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.5e-14  Score=102.65  Aligned_cols=159  Identities=19%  Similarity=0.239  Sum_probs=119.1

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCC---------Cc-eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC---
Q 042260            2 AQPSVILATASYDKTIKFWEAKS---------GR-CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP---   68 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---   68 (174)
                      ++++++|+.|+.+|+|.++.++.         |+ .+...+.|+.+++.++|+.  .++.+++|+.++-|.++....   
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gdG~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGDGLVYGWEWNEEEESLA   96 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccCceEEEeeehhhhhhcc
Confidence            46789999999999999998753         22 2445577899999999983  456667789999998854321   


Q ss_pred             -CCeE--EeecC-----CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeC
Q 042260           69 -QPVM--SYDQH-----TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        69 -~~~~--~~~~~-----~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                       +++.  ..+.|     -..|.++-..|..+-+++++.|+.++-||+++++...++. |..-+.+++--.....+++|++
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E  176 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE  176 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence             1110  11112     2456777778777777777899999999999999998885 5566788777555667999999


Q ss_pred             CCcEEEEeCCCCcceeecCcccc
Q 042260          140 NGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      ||++|+||.++.+|+.-++...+
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~  199 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKN  199 (325)
T ss_pred             CccEEEEeccccceeEEeccccC
Confidence            99999999999999977664433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.66  E-value=4.3e-15  Score=116.83  Aligned_cols=150  Identities=21%  Similarity=0.328  Sum_probs=110.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEE--eecCCCCeEEEEEcCCCce-E-EEecCCcEEEEEcCCCCCC---------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRT--IQYPDSQVNRLEITPNKHY-L-AAAGNPHIRLFDVNSSSPQ---------   69 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~-~~~~d~~i~i~d~~~~~~~---------   69 (174)
                      +....|++++.|.++|+||++++++...  ..+|...+.+++|.+.+.. | .++.|+.+.|||.+.....         
T Consensus       110 pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~  189 (720)
T KOG0321|consen  110 PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI  189 (720)
T ss_pred             CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence            3456789999999999999999988766  7789889999999996543 3 3456899999998754311         


Q ss_pred             ---------C-------eEEeecCCCCEEE---EEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeec---------c--
Q 042260           70 ---------P-------VMSYDQHTNNVMA---VGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYE---------S--  118 (174)
Q Consensus        70 ---------~-------~~~~~~~~~~v~~---~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~---------~--  118 (174)
                               +       ......+...+.+   +.+..|...||+++. |+.|++||+++..+....+         +  
T Consensus       190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk  269 (720)
T KOG0321|consen  190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK  269 (720)
T ss_pred             hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence                     0       1111223344444   455667888999887 9999999999866543221         1  


Q ss_pred             -cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       119 -~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                       ...+.++...-.|++|++.+.|+.|.+||+....
T Consensus       270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s  304 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS  304 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence             2347788888888999888889999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.66  E-value=5.5e-14  Score=104.77  Aligned_cols=164  Identities=12%  Similarity=0.122  Sum_probs=116.2

Q ss_pred             CcEEEEEeeCCC-cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeec---C
Q 042260            4 PSVILATASYDK-TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQ---H   77 (174)
Q Consensus         4 ~~~~l~s~s~D~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~---~   77 (174)
                      ++.++++++.++ .+.+||.++++........ .....+.|++++..++ ++ .++.+++||+++++......+..   +
T Consensus       125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~  203 (300)
T TIGR03866       125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH  203 (300)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence            466777777765 4677899888776655433 3457789999988664 43 47889999998764322221111   1


Q ss_pred             --CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCCcc
Q 042260           78 --TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTANSC  153 (174)
Q Consensus        78 --~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~  153 (174)
                        ......++|++++++++ +.+.++.+.+||+++.+..........+.+++|+|++..|+++ +.++.|++||+++.++
T Consensus       204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence              11234678899999754 4455678999999887766555555678999999999998876 4689999999999999


Q ss_pred             eeecCcccceeEEEE
Q 042260          154 SCELGLQYGLRTFLF  168 (174)
Q Consensus       154 ~~~~~~~~~~~~~~~  168 (174)
                      ...++....+-..+|
T Consensus       284 ~~~~~~~~~~~~~~~  298 (300)
T TIGR03866       284 IKSIKVGRLPWGVVV  298 (300)
T ss_pred             EEEEEcccccceeEe
Confidence            888776665555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.65  E-value=4.4e-15  Score=114.14  Aligned_cols=150  Identities=20%  Similarity=0.354  Sum_probs=113.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-------------------------------------------eE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-------------------------------------------VN   39 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-------------------------------------------v~   39 (174)
                      ..+.++++||..+.|+|||++...+.+..+.|...                                           |.
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            34568999999999999998744333333333332                                           33


Q ss_pred             EEEEcCCCceE-E-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           40 RLEITPNKHYL-A-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        40 ~~~~~~~~~~~-~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      -+.+++....+ . ++.+|.+.+||.....+. ......|..+...++|+| +...|++.+.|..|.+||++..+....+
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcc-cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            45566654433 2 345677899998654322 223457899999999998 5668999999999999999988877777


Q ss_pred             cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260          117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ....+...++|.++|.+|++|...|.|..||++..+-
T Consensus       248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            7778899999999999999999999999999996543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=4.4e-15  Score=112.39  Aligned_cols=162  Identities=20%  Similarity=0.291  Sum_probs=121.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce---------------------eEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC---------------------YRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRL   60 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i   60 (174)
                      .+.++|.|..|..|.|||+.--..                     -..-..|...|..+.|+...  .+.+++.|.++++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            466899999999999999742110                     00012355566778787643  3344457899999


Q ss_pred             EEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCE-EEEe
Q 042260           61 FDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTE-LISG  137 (174)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~-l~s~  137 (174)
                      ||+.+++  +...+..|..+|.++.|++ .+..+++|+.|++|++.|.|.+.. ...+...+.|-.++|+|.... ++++
T Consensus       271 WD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence            9999884  4555668999999999987 578999999999999999996433 345667788999999997655 6678


Q ss_pred             eCCCcEEEEeCCCC-cceeecCcccceeEEE
Q 042260          138 DQNGNIRVWDLTAN-SCSCELGLQYGLRTFL  167 (174)
Q Consensus       138 ~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~  167 (174)
                      +.||+|+-+|+|+. .+++++..+..-++-+
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl  379 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGL  379 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence            89999999999976 7888876555554433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.65  E-value=3.8e-15  Score=114.69  Aligned_cols=147  Identities=14%  Similarity=0.287  Sum_probs=124.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCC-----------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQP-----------   70 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~-----------   70 (174)
                      .+.++++++-.||.|.|||+.+...++.+++|...+.+++++++|..+ .++-|..+|.||++.+....           
T Consensus       519 pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSL  598 (705)
T KOG0639|consen  519 PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSL  598 (705)
T ss_pred             CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheec
Confidence            467788999999999999999999999999999999999999988655 55679999999997553100           


Q ss_pred             ---------------------------eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE
Q 042260           71 ---------------------------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN  123 (174)
Q Consensus        71 ---------------------------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~  123 (174)
                                                 ...+..|..-|+++.|.+.|+++++.+.|..+..|.+.-+..+......+.|.
T Consensus       599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVl  678 (705)
T KOG0639|consen  599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL  678 (705)
T ss_pred             ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcce
Confidence                                       01122456789999999999999999999999999998888887777788999


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          124 TVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       124 ~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ++.++-+.+++++|+.|+...+|.+.
T Consensus       679 sCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  679 SCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             eeeeccCceEEEecCCCcceEEEEEe
Confidence            99999999999999999999888763

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.63  E-value=7e-15  Score=110.15  Aligned_cols=128  Identities=16%  Similarity=0.269  Sum_probs=109.7

Q ss_pred             EeecCCCCeEEEEEcCCCce-EEE-ecCCcEEEEEcCCCC-----CCCeEEeecCCCCEEEEEEeeC-CCEEEEecCCCc
Q 042260           30 TIQYPDSQVNRLEITPNKHY-LAA-AGNPHIRLFDVNSSS-----PQPVMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGT  101 (174)
Q Consensus        30 ~~~~~~~~v~~~~~~~~~~~-~~~-~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~  101 (174)
                      .+.+|.++|..++|+|-+.. +++ +.|.++.+|++..+.     ..++..+.+|...|--++|+|. .+.|+|++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            34567889999999996544 444 357789999997553     2456778899999999999985 557899999999


Q ss_pred             EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          102 VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       102 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      |.+|++.+.....++.|...|.++.|+-+|+.+++.+.|+.||+||.+++..+.+.
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            99999999998888899999999999999999999999999999999999988876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.62  E-value=3.3e-15  Score=109.58  Aligned_cols=143  Identities=22%  Similarity=0.421  Sum_probs=112.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeE-EeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVM-SYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~   80 (174)
                      ...++|.||.-|.|||.|+..+++...+..|...|+.+.++|..  .+++++.|..+|+|++++.....+. .+.+|+..
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence            35689999999999999999999999999999999999999976  4566778999999999887332222 25689999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCee------EEee-----------------------cccCcEEEEEEccCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC------QMEY-----------------------ESRAAVNTVVLHPNQ  131 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~------~~~~-----------------------~~~~~v~~~~~~~~~  131 (174)
                      |+++.|+.+|.+|++++-|.++++|++..+..      ..++                       -|+..|.|+.|  -+
T Consensus       184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~g  261 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FG  261 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hh
Confidence            99999999999999999999999999984321      1000                       12233445555  24


Q ss_pred             CEEEEeeCCCcEEEEeC
Q 042260          132 TELISGDQNGNIRVWDL  148 (174)
Q Consensus       132 ~~l~s~~~d~~i~iwd~  148 (174)
                      +++++=|.++.|..|..
T Consensus       262 d~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKP  278 (385)
T ss_pred             hheeecccCceEEEEec
Confidence            77888777889999988

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.8e-14  Score=104.47  Aligned_cols=146  Identities=16%  Similarity=0.292  Sum_probs=115.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD-------   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~-------   75 (174)
                      .|.+||.|..||.|.+||..|....+.+..|-.+|.+++|+++|.++.+ +.|..+++||+..+.+.....++       
T Consensus        34 ~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q  113 (405)
T KOG1273|consen   34 WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQ  113 (405)
T ss_pred             CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceee
Confidence            5678999999999999999998877788888889999999999887654 57889999999877532111110       


Q ss_pred             cCC-------------------------------------CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc
Q 042260           76 QHT-------------------------------------NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES  118 (174)
Q Consensus        76 ~~~-------------------------------------~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~  118 (174)
                      -|.                                     ....+..|.+.|++|++|...|.+.++|..+.+++..+.-
T Consensus       114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri  193 (405)
T KOG1273|consen  114 WHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI  193 (405)
T ss_pred             eccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence            000                                     0011112566799999999999999999999888866643


Q ss_pred             --cCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          119 --RAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       119 --~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                        .+.|..+.++..+++++.-++|+.||.|+++
T Consensus       194 ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  194 TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             chheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence              3689999999999999999999999999998

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.9e-14  Score=108.21  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=119.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++..|++|+.||++|+|+..+-..+.....|...|.++.|+|+++++++-+....++|+.+++......+...-......
T Consensus       155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~  234 (398)
T KOG0771|consen  155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSS  234 (398)
T ss_pred             CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhh
Confidence            55789999999999999977777766666788899999999999988876555999999988722111111122344556


Q ss_pred             EEEeeCC-----CEEEEecCCCcEEEEeCCCCee---E---EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           84 VGFQCDG-----NWMYSGSEDGTVKIWDLRAPVC---Q---MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        84 ~~~~~~~-----~~l~t~~~dg~v~iwd~~~~~~---~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +.|..++     +.++.-...+.|+.||+.....   .   ........|.+++++++|++++.|+-||.|.+++...-+
T Consensus       235 cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq  314 (398)
T KOG0771|consen  235 CRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ  314 (398)
T ss_pred             ceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee
Confidence            6677665     3334445567788887643221   1   111224579999999999999999999999999999988


Q ss_pred             ceeec-CcccceeEEEEEeec
Q 042260          153 CSCEL-GLQYGLRTFLFYHQD  172 (174)
Q Consensus       153 ~~~~~-~~~~~~~~~~~~~~~  172 (174)
                      +.+-. +.+...++=+-|.|+
T Consensus       315 ~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  315 RLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             eeEeehhhheeeeeeEEEcCC
Confidence            77554 344445555555544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=9.3e-14  Score=113.08  Aligned_cols=152  Identities=19%  Similarity=0.324  Sum_probs=123.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .++.+|.+++.||.|++|+...- +....+..+...|.+++... +.+++++.++.+..|....+....++  ..-.-++
T Consensus        23 ~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL--~Rftlp~   99 (933)
T KOG1274|consen   23 PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTIL--ARFTLPI   99 (933)
T ss_pred             CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCcccee--eeeeccc
Confidence            45668999999999999997665 44444443556677776653 47777888999999999887655433  3456789


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      ..++++.+|++++.||.|-.|++-++........+ .+..+|.++.++|++++||+.+.||+|++||+.++.+...+
T Consensus       100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence            99999999999999999999999998765554444 67899999999999999999999999999999999887554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.59  E-value=3.9e-14  Score=113.14  Aligned_cols=169  Identities=14%  Similarity=0.235  Sum_probs=132.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++++.||+|.+-|++||||+.+-+....+..|++.|.++.++..   .+++++ +.|+-|.+||...+ ..++-++.+|.
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-y~l~qtld~HS  547 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-YDLVQTLDGHS  547 (1080)
T ss_pred             CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-cchhhhhcccc
Confidence            46778999999999999999998888888899999999999853   456655 45778999997532 22233333444


Q ss_pred             CCEE-------------------------------------------------EEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           79 NNVM-------------------------------------------------AVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        79 ~~v~-------------------------------------------------~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      ..|+                                                 .++..|.-+++++++.|+.|+|||+.+
T Consensus       548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s  627 (1080)
T KOG1408|consen  548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES  627 (1080)
T ss_pred             cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence            3344                                                 444455667899999999999999999


Q ss_pred             CeeEEeecc----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          110 PVCQMEYES----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       110 ~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      .+..+.|..    ....-.+...|.+.+|++...|+++.++|+.+++|+.++..++.+.+=+.|..|
T Consensus       628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence            998888853    345677889999999999999999999999999999998877777766665544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=2.7e-13  Score=100.88  Aligned_cols=143  Identities=20%  Similarity=0.345  Sum_probs=115.1

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .|+.+-.+ .|.|||+++-+.++++...   ...+..++.++.+.+++--   ..|.+.+||..+-  ++....++|.+.
T Consensus        99 RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~  175 (391)
T KOG2110|consen   99 RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGP  175 (391)
T ss_pred             eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCc
Confidence            35555555 4999999999988887643   3335566666666777653   3578999998654  566677899999


Q ss_pred             EEEEEEeeCCCEEEEecCCCc-EEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           81 VMAVGFQCDGNWMYSGSEDGT-VKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +.+++|+++|.++||+|+.|+ ||++.+..+....+|..+   ..|.+++|+|++.+|++.|..++|.++.++...
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            999999999999999999986 799999988888777654   458899999999999999999999999998643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=5e-14  Score=109.46  Aligned_cols=155  Identities=23%  Similarity=0.391  Sum_probs=119.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCC--------CceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC------
Q 042260            4 PSVILATASYDKTIKFWEAKS--------GRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP------   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~------   68 (174)
                      ....|++++.|+++++|+++.        -+.+.+++.|.++|.++++.+.+..+. ++-|+.|++|.+..+..      
T Consensus       305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d  384 (577)
T KOG0642|consen  305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD  384 (577)
T ss_pred             CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence            345689999999999999832        245788999999999999999877655 55699999997753210      


Q ss_pred             --CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee----------------------------------
Q 042260           69 --QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC----------------------------------  112 (174)
Q Consensus        69 --~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----------------------------------  112 (174)
                        ...-.+.+|...+..+++++....|++++.||++++|+......                                  
T Consensus       385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~  464 (577)
T KOG0642|consen  385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYT  464 (577)
T ss_pred             cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccc
Confidence              11234568999999999999999999999999999999532100                                  


Q ss_pred             -------------------------------E------Eee-----------------------cccCcEEEEEEccCCC
Q 042260          113 -------------------------------Q------MEY-----------------------ESRAAVNTVVLHPNQT  132 (174)
Q Consensus       113 -------------------------------~------~~~-----------------------~~~~~v~~~~~~~~~~  132 (174)
                                                     +      .++                       .+...+.++++.|++.
T Consensus       465 ~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~  544 (577)
T KOG0642|consen  465 SIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP  544 (577)
T ss_pred             cchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc
Confidence                                           0      000                       1123478999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          133 ELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       133 ~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +|++++.|+.+++|.+..+.|+.+..
T Consensus       545 ~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  545 YLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             eEEeecCCceeehhhccchheeeccc
Confidence            99999999999999999999887765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=9.3e-14  Score=101.93  Aligned_cols=101  Identities=19%  Similarity=0.358  Sum_probs=76.0

Q ss_pred             CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---C---eeE--Eee-
Q 042260           47 KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---P---VCQ--MEY-  116 (174)
Q Consensus        47 ~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~---~~~--~~~-  116 (174)
                      ++++.+ +.|..|.+|++. +  +.+...+.........+.+|+|+++++++-.-.|++|.+-.   +   ...  ..+ 
T Consensus       199 ~k~imsas~dt~i~lw~lk-G--q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk  275 (420)
T KOG2096|consen  199 AKYIMSASLDTKICLWDLK-G--QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK  275 (420)
T ss_pred             ceEEEEecCCCcEEEEecC-C--ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence            344443 457789999997 3  22333344556667778999999999999999999999632   1   111  222 


Q ss_pred             cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .|.+.|..++|+|+.+..++++.||++|+||..-
T Consensus       276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            4678899999999999999999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=1.3e-14  Score=108.94  Aligned_cols=146  Identities=21%  Similarity=0.334  Sum_probs=118.2

Q ss_pred             EEEEeeCCCcEEEEECCCCce---------eEEeecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcC--------C---
Q 042260            7 ILATASYDKTIKFWEAKSGRC---------YRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVN--------S---   65 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~--------~---   65 (174)
                      .++||+.|..||+|.++.++.         +..+..|...|+.+.|+|++.++++++| +.+.+|...        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            799999999999998765432         2334567888999999999999998765 568999765        1   


Q ss_pred             ---CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC
Q 042260           66 ---SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        66 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                         +.+........|...+-.++|+++++++++++-|..+++||++.+.....+ .+..-++-++|.|-..++++-+.|.
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence               112333456678999999999999999999999999999999998876655 5677899999999999999999998


Q ss_pred             cEEEEeCCCCc
Q 042260          142 NIRVWDLTANS  152 (174)
Q Consensus       142 ~i~iwd~~~~~  152 (174)
                      ..+.+.+...+
T Consensus       188 ~~~~~~~~~~~  198 (434)
T KOG1009|consen  188 HPEGFSAKLKQ  198 (434)
T ss_pred             ccceeeeeeee
Confidence            77777766544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=8.1e-14  Score=102.75  Aligned_cols=155  Identities=18%  Similarity=0.289  Sum_probs=114.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CC-CCeEEEEEcCCCceEEEe-----cCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PD-SQVNRLEITPNKHYLAAA-----GNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      ..+.+.+|+.||+||+||++.......+..  +. .+..+++.+-.+.+++.+     .+..+.+||++..+...-.-.+
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e  162 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE  162 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence            356788999999999999998766555543  22 345566555345555554     2567899999876431111235


Q ss_pred             cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe----eEEeecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260           76 QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT  149 (174)
Q Consensus        76 ~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~  149 (174)
                      .|...|+.+.|.| +.+.++|||-||.|.++|++...    ...++.+...|..+.|+-++ ..|.+-+..++..+|+++
T Consensus       163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            6899999999998 68899999999999999998652    23445667889999998765 458888889999999999


Q ss_pred             CCcceeecC
Q 042260          150 ANSCSCELG  158 (174)
Q Consensus       150 ~~~~~~~~~  158 (174)
                      .+.+.-.++
T Consensus       243 ~~~~~~~~~  251 (376)
T KOG1188|consen  243 DGSEETWLE  251 (376)
T ss_pred             CCChhhccc
Confidence            988664444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.7e-13  Score=104.51  Aligned_cols=160  Identities=15%  Similarity=0.317  Sum_probs=130.6

Q ss_pred             CcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCCCc-eEEEec-CCcEEEEEcCCCCCCCeEEeecCC-
Q 042260            4 PSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG-NPHIRLFDVNSSSPQPVMSYDQHT-   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-   78 (174)
                      ...++++++.|++++||.+.  ++..++++.....+|..+.|.|+|. .+++++ -..+..||+.+.+...+..+.++. 
T Consensus       224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~  303 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE  303 (514)
T ss_pred             CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence            35689999999999999764  4556788888888999999999988 454444 456899999887766554443433 


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ..+.....++++++|+..+..|.|.+--..+...+..+.....|.+++|+-++..|++.+.+|.|.+||++..+|...+.
T Consensus       304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            34666778899999999999999999988888888888888999999999999999999899999999999999987765


Q ss_pred             cccce
Q 042260          159 LQYGL  163 (174)
Q Consensus       159 ~~~~~  163 (174)
                      -+..+
T Consensus       384 D~G~v  388 (514)
T KOG2055|consen  384 DDGSV  388 (514)
T ss_pred             ecCcc
Confidence            44444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.1e-14  Score=120.50  Aligned_cols=167  Identities=23%  Similarity=0.378  Sum_probs=119.2

Q ss_pred             EEEEEeeCCCcEEEEECCC---Cc---eeEEeecCCCCeEEEEEcCCCc-eEEEe-cCCcEEEEEcCCCCCCCeEEeecC
Q 042260            6 VILATASYDKTIKFWEAKS---GR---CYRTIQYPDSQVNRLEITPNKH-YLAAA-GNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .+|+.|..||.|.+||...   +.   .+.....|.+.|.+++|++.+. +++++ .++.|.|||+...+..........
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            4799999999999999654   22   3455667889999999999654 66655 578899999976432222212335


Q ss_pred             CCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCC-CEEEEeeCCC---cEEEEeCC
Q 042260           78 TNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQ-TELISGDQNG---NIRVWDLT  149 (174)
Q Consensus        78 ~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~s~~~d~---~i~iwd~~  149 (174)
                      .+.|.+++|+.. ...|++++.+|.+-|||+|..+.+..+..   +..+..++|||+. ..|++++.|.   .|.+||+|
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            678999999863 55689999999999999998766655533   2458999999975 4577666554   59999999


Q ss_pred             CCcceee-c-CcccceeEEEEEeec
Q 042260          150 ANSCSCE-L-GLQYGLRTFLFYHQD  172 (174)
Q Consensus       150 ~~~~~~~-~-~~~~~~~~~~~~~~~  172 (174)
                      ......+ + .++.++.++---++|
T Consensus       241 ~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  241 FASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ccCCchhhhcccccceeeeccCCCC
Confidence            6544433 2 466666665544443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=9.3e-13  Score=93.28  Aligned_cols=135  Identities=15%  Similarity=0.346  Sum_probs=97.1

Q ss_pred             cEEEEECCC-CceeEEeec-CCCCeEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           16 TIKFWEAKS-GRCYRTIQY-PDSQVNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        16 ~v~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ...+|.++. +..+..+.. ...+|.+++|+|++..++..   .+..+.+||++.   ..+..+  +...+..+.|+|+|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~--~~~~~n~i~wsP~G  112 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSF--GTQPRNTISWSPDG  112 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEee--cCCCceEEEECCCC
Confidence            355555522 334444443 24469999999988765432   345799999962   333333  35667789999999


Q ss_pred             CEEEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCCcceeec
Q 042260           91 NWMYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        91 ~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~  157 (174)
                      +++++++.+   |.|.+||++..+.+.+.++. .+..++|+|+|++|++++.      |..++||++. ++.+++.
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            999998754   66999999988887776654 4789999999999998754      6789999985 5555554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.4e-14  Score=118.62  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=119.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCC-CceEEEe-cCCcEEEEEcCCCCCCCeEEeecC--C
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPN-KHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQH--T   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~--~   78 (174)
                      +.+||+|+.||.|.|||+++-+.....  ......|.+++|+.. ..+++++ .++.+-|||++..+.  +..+..+  +
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~  206 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGR  206 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCc
Confidence            458999999999999999875443322  123457999999874 4455554 566899999998743  4443333  3


Q ss_pred             CCEEEEEEeeCCC-EEEEecCCC---cEEEEeCCCCe-eEEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260           79 NNVMAVGFQCDGN-WMYSGSEDG---TVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        79 ~~v~~~~~~~~~~-~l~t~~~dg---~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ..+..++|+|+.- .+++++.|.   .|.+||+|... ....+ .|...|.++.|++.+ .+|++++.|+.|.+||.+++
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            5688999998644 455555543   69999998643 23344 567889999999977 67889999999999999999


Q ss_pred             cceeecCcccceeEEEEEe
Q 042260          152 SCSCELGLQYGLRTFLFYH  170 (174)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~  170 (174)
                      +.+.+++.+.+-+.=+.+-
T Consensus       287 Evl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  287 EVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             eEeeecCCCCcceeeeeec
Confidence            9999988766665544443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.55  E-value=1.5e-13  Score=111.06  Aligned_cols=168  Identities=15%  Similarity=0.200  Sum_probs=135.0

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEe---ecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTI---QYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      -.||.+.+.|+..|+|-+|+.+.|-...++   ..|+.+|.+++....+..+ +++.+|.++.||.....  ++..+. -
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--l~~~l~-l  533 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--LKKSLR-L  533 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--eeeeec-c
Confidence            357888899999999999999999888887   4688899999998877655 45678999999997653  222222 2


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      ...+.++.++.....++.+..|-.|+++|+.+.+.+..|. |...|++++|+|+|+-|++++-|++||+||+-++.+.--
T Consensus       534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence            3567777888888889999999999999999988888775 788999999999999999999999999999999877654


Q ss_pred             cCcccceeEEEEEeecC
Q 042260          157 LGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       157 ~~~~~~~~~~~~~~~~~  173 (174)
                      +.. ..++..+.+.|++
T Consensus       614 ~~v-d~~~~sls~SPng  629 (910)
T KOG1539|consen  614 LLV-DSPCTSLSFSPNG  629 (910)
T ss_pred             Eec-CCcceeeEECCCC
Confidence            432 3445555555554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.55  E-value=1.8e-13  Score=99.27  Aligned_cols=148  Identities=20%  Similarity=0.419  Sum_probs=111.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce--eEE-eecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecC--
Q 042260            5 SVILATASYDKTIKFWEAKSGRC--YRT-IQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQH--   77 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~--~~~-~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--   77 (174)
                      ..+|.++|-|-|..|||+++|..  +.+ +-.|+.+|.+++|...+  .+.+.+.||.+|+||++..+- ....|+..  
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~  241 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSP  241 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCC
Confidence            45799999999999999999743  222 23588899999999844  344456899999999987542 22334332  


Q ss_pred             CCCEEEEEEee-CCCEEEEecCC-CcEEEEeCCCCeeE-Ee-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCc
Q 042260           78 TNNVMAVGFQC-DGNWMYSGSED-GTVKIWDLRAPVCQ-ME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        78 ~~~v~~~~~~~-~~~~l~t~~~d-g~v~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..+...++|++ +.+++||-..| ..|.|-|+|.++.. .. ..|...|+.++|.|.. ..+.+++.|.++.|||+....
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            45678888886 67788875554 46999999987643 22 3578899999999965 568899999999999998654


Q ss_pred             c
Q 042260          153 C  153 (174)
Q Consensus       153 ~  153 (174)
                      .
T Consensus       322 ~  322 (364)
T KOG0290|consen  322 R  322 (364)
T ss_pred             c
Confidence            3

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=8.8e-13  Score=93.72  Aligned_cols=156  Identities=21%  Similarity=0.360  Sum_probs=110.9

Q ss_pred             EEEEeeCCCcEEEEECCCCce------eEEee-------cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeE
Q 042260            7 ILATASYDKTIKFWEAKSGRC------YRTIQ-------YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~------~~~~~-------~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~   72 (174)
                      +|++|+ ||.|+-|..+....      +-..+       ..-..|+.+...|. +.++.+++|+.+..||+++++  ...
T Consensus        74 ~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--i~r  150 (325)
T KOG0649|consen   74 FLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--IQR  150 (325)
T ss_pred             heeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--EEE
Confidence            466666 59999998654321      11111       11235889999974 567777899999999999984  456


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-----------CcEEEEEEccCCCEEEEeeCCC
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-----------AAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      .+.+|++-+.++.--.....+.+|++||++|+||.++.+++..++..           .-|-+++.  ++.-+++| ...
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGP  227 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCC
Confidence            78899999999986444557899999999999999998887665421           12445444  45556655 456


Q ss_pred             cEEEEeCCCCcceeecCcccceeEEEE
Q 042260          142 NIRVWDLTANSCSCELGLQYGLRTFLF  168 (174)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~  168 (174)
                      .+.+|.+++..|++-++-+.++.--.|
T Consensus       228 ~lslwhLrsse~t~vfpipa~v~~v~F  254 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFPIPARVHLVDF  254 (325)
T ss_pred             ceeEEeccCCCceEEEecccceeEeee
Confidence            799999999998888776666644333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=5.4e-13  Score=99.91  Aligned_cols=160  Identities=18%  Similarity=0.357  Sum_probs=123.4

Q ss_pred             CCcEEEEEeeCC--CcEEEEECCCCceeEEeecCC-------CCe--EEEEEcCC--C-ceEEEecCCcEEEEEcCCCCC
Q 042260            3 QPSVILATASYD--KTIKFWEAKSGRCYRTIQYPD-------SQV--NRLEITPN--K-HYLAAAGNPHIRLFDVNSSSP   68 (174)
Q Consensus         3 ~~~~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~-------~~v--~~~~~~~~--~-~~~~~~~d~~i~i~d~~~~~~   68 (174)
                      +...++++||..  .-+++||+++.+.+.+-+...       -+|  +++.|-+.  . .++.+..-+++|+||.+. +.
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qR  237 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QR  237 (412)
T ss_pred             CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cC
Confidence            456688899999  889999999875544433211       133  35666554  3 444455678899999985 45


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-e-cccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                      .|+..+.-....++++...|.+++|++|..-+.+..+|+++.+.... + .....|.++..+|+.++++++|-|+.+||+
T Consensus       238 RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  238 RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            77888887888999999999999999999999999999999876654 3 346789999999999999999999999999


Q ss_pred             eCCCCcceeecCcccce
Q 042260          147 DLTANSCSCELGLQYGL  163 (174)
Q Consensus       147 d~~~~~~~~~~~~~~~~  163 (174)
                      |+.+.....+-=.+..+
T Consensus       318 D~ktrkll~kvYvKs~l  334 (412)
T KOG3881|consen  318 DIKTRKLLHKVYVKSRL  334 (412)
T ss_pred             ecccchhhhhhhhhccc
Confidence            99996655554333333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.54  E-value=4.3e-14  Score=111.72  Aligned_cols=142  Identities=17%  Similarity=0.313  Sum_probs=109.1

Q ss_pred             EEEEEeeCCCcEEEEECCCCc-------eeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260            6 VILATASYDKTIKFWEAKSGR-------CYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +.|+.+..||.|++|.+..+.       ....+..|...|+.+.|+|-  +.+.+++.|-+|++||+++....  ..+.+
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~--~~l~g  718 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY--SRLVG  718 (1012)
T ss_pred             HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--heecc
Confidence            358999999999999976542       23445677788999999993  44556678999999999987543  34679


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc----CcEEEEEEccCCCEEEEeeCCC----cEEEEeC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR----AAVNTVVLHPNQTELISGDQNG----NIRVWDL  148 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~  148 (174)
                      |+++|.+++|+++|+.++|.+.||++++|..++...-. ++.+    .+--.+.|.-+++++++.+-|+    +|.+||-
T Consensus       719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            99999999999999999999999999999988754322 1222    2335677888999988776654    5788877


Q ss_pred             CC
Q 042260          149 TA  150 (174)
Q Consensus       149 ~~  150 (174)
                      ++
T Consensus       798 q~  799 (1012)
T KOG1445|consen  798 QT  799 (1012)
T ss_pred             hh
Confidence            64

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.52  E-value=1e-12  Score=96.74  Aligned_cols=147  Identities=22%  Similarity=0.401  Sum_probs=112.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-C--ceeEEeec--CCCCeEEEEEcC----CCceEEEec-CCcEEEEEcCCCCCCCeEE
Q 042260            4 PSVILATASYDKTIKFWEAKS-G--RCYRTIQY--PDSQVNRLEITP----NKHYLAAAG-NPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-~--~~~~~~~~--~~~~v~~~~~~~----~~~~~~~~~-d~~i~i~d~~~~~~~~~~~   73 (174)
                      ..++++|+|.+ .+.+|.... +  ..++++..  ++.....++|.-    .+.++++++ -|.||+.|+.++  +....
T Consensus        54 e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~  130 (385)
T KOG1034|consen   54 EPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKN  130 (385)
T ss_pred             CCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccc
Confidence            44578888866 588888543 3  23444432  334455566652    245665544 567899999776  44556


Q ss_pred             eecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           74 YDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      +.+|...|..+.+.|. .++++++|.|..||+|++++..|+..+.    |+..|.++.|++++..+++++-|-++++|++
T Consensus       131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence            7789999999999984 6799999999999999999999987773    6788999999999999999999999999999


Q ss_pred             CCCcc
Q 042260          149 TANSC  153 (174)
Q Consensus       149 ~~~~~  153 (174)
                      ..++.
T Consensus       211 ~~~~f  215 (385)
T KOG1034|consen  211 NVKEF  215 (385)
T ss_pred             ChhHH
Confidence            96543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=1.1e-11  Score=94.66  Aligned_cols=151  Identities=30%  Similarity=0.577  Sum_probs=118.8

Q ss_pred             cEEEEEeeC-CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEE-ecCCcEEEEEcCCCCCCCeE-EeecCCCC
Q 042260            5 SVILATASY-DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAA-AGNPHIRLFDVNSSSPQPVM-SYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~-~~~~~~~~   80 (174)
                      +..+++++. |+.+++|+..++..+..+..|...+..+.++|.+. ++++ +.|+.+++||...+  .... .+..|...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~  244 (466)
T COG2319         167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG--KLLRSTLSGHSDS  244 (466)
T ss_pred             CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC--cEEeeecCCCCcc
Confidence            336777775 99999999999888888888888999999998886 5555 57889999988743  2233 45667666


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      . ...|++++.++++++.|+.+++||++.... .... .+...+.++.+.|++..+++++.|+.+++||++.........
T Consensus       245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            5 447889888999999999999999986553 3222 456789999999988888888889889999999877655543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.50  E-value=6.1e-13  Score=96.51  Aligned_cols=141  Identities=17%  Similarity=0.293  Sum_probs=107.1

Q ss_pred             eeCCCcEEEEECCCCce-eEEeecC-----CCCeEEEEEcC--CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260           11 ASYDKTIKFWEAKSGRC-YRTIQYP-----DSQVNRLEITP--NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~~-~~~~~~~-----~~~v~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +..|..|.+|++..+.. +..+...     .....+-.|+|  ++..+++.+|+.+..||+++.... ....+.|...+.
T Consensus       140 sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~-~sI~dAHgq~vr  218 (370)
T KOG1007|consen  140 SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN-NSIEDAHGQRVR  218 (370)
T ss_pred             EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh-cchhhhhcceee
Confidence            44488999999988766 4444322     23355667887  677888889999999999975422 222457888899


Q ss_pred             EEEEeeCCC-EEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCc
Q 042260           83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .+.|+|+.. .|+||+.||.|+|||.|..+. +.++ .|..-|.++.|+|. +..+++|++|..|.+|....-+
T Consensus       219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            999999755 689999999999999987543 3333 45667999999995 5667899999999999988654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=5.5e-14  Score=107.30  Aligned_cols=140  Identities=20%  Similarity=0.362  Sum_probs=114.6

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      -+|++++..|.++.-|+.+|+.+..+....+.+..+..+|-+..+-. ..+|.+.+|.....  .++..+-+|.+.|.++
T Consensus       222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKILCHRGPVSSI  299 (545)
T ss_pred             heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHHhcCCCcceE
Confidence            46889999999999999999999999877778888999997766544 47889999998765  5566677999999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ++.++|++++|.+.|..++|||+|......++..+.+...++++..+  +++.+....|.||.=.
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDA  362 (545)
T ss_pred             EECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhh
Confidence            99999999999999999999999987766666666777888886543  4444455579999533

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.50  E-value=1.4e-13  Score=108.84  Aligned_cols=146  Identities=16%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             eeCCCcEEEEECCCCc-e----eEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC-----CCCeEEeecCC
Q 042260           11 ASYDKTIKFWEAKSGR-C----YRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS-----PQPVMSYDQHT   78 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~-~----~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~   78 (174)
                      +|--|.|-||+++... .    +..+ .....|.++.|+|-  ..+.+++.|+.|++|-+.++.     ..+...+..|.
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            4557889999987532 2    2222 23457899999983  345556788899999987653     24445567899


Q ss_pred             CCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-cee
Q 042260           79 NNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS-CSC  155 (174)
Q Consensus        79 ~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~  155 (174)
                      .+|..+.|+|- ...+++++.|.+|++||++.......+ .|...|..++|+|+|+.+++.+.||+|++|+.+... -++
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~  757 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY  757 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence            99999999984 567899999999999999876543333 677899999999999999999999999999999754 444


Q ss_pred             ec
Q 042260          156 EL  157 (174)
Q Consensus       156 ~~  157 (174)
                      +.
T Consensus       758 Eg  759 (1012)
T KOG1445|consen  758 EG  759 (1012)
T ss_pred             cC
Confidence            43

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=7.5e-13  Score=96.63  Aligned_cols=145  Identities=19%  Similarity=0.310  Sum_probs=108.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCC------ceeEEee-------cCCCCeEEEEEcCC---CceEEEecCC------cEEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSG------RCYRTIQ-------YPDSQVNRLEITPN---KHYLAAAGNP------HIRLFD   62 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~------~~~~~~~-------~~~~~v~~~~~~~~---~~~~~~~~d~------~i~i~d   62 (174)
                      +..||+++.||.+|||+.-..      ...+.++       .+..+..++.|+|.   ..+++.+.+.      .++||.
T Consensus       126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye  205 (361)
T KOG2445|consen  126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE  205 (361)
T ss_pred             ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence            457999999999999985432      2223332       13445778899874   3567666555      788998


Q ss_pred             cCCC--CCCCeEEeecCCCCEEEEEEeeC----CCEEEEecCCCcEEEEeCCCCe--------------------eEEee
Q 042260           63 VNSS--SPQPVMSYDQHTNNVMAVGFQCD----GNWMYSGSEDGTVKIWDLRAPV--------------------CQMEY  116 (174)
Q Consensus        63 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~--------------------~~~~~  116 (174)
                      ...+  +...+..+..|...|.+++|.|+    -..||+++.|| |+||.++..+                    .+..+
T Consensus       206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence            7554  34455567789999999999985    23699999999 9999987311                    11223


Q ss_pred             -cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          117 -ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       117 -~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                       .|+.+|..+.|+-.|..|++.|.||.||+|..+.
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence             3567899999999999999999999999999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.5e-12  Score=107.89  Aligned_cols=145  Identities=22%  Similarity=0.422  Sum_probs=107.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCC-CCeEEeecCCCC-
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQHTNN-   80 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~-   80 (174)
                      ..|+++|.-+.|||||.......+.+... +..++.+.-+. .+.+++ +..||.+|+||.+.... ..+..+..|+.. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            34555555889999999998888887643 44566664443 345554 45899999999976543 234556778777 


Q ss_pred             -EEEEEEeeCCCE-EEEecCCCcEEEEeCCCCeeE------EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           81 -VMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQ------MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        81 -v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                       |..+.+.++|-. +++|+.||.|++||+|.....      .+.+.++..+++..|+....+|+|+. +.|+||++.-.
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence             899999886664 999999999999999984221      11122345899999999999999998 89999998754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.49  E-value=5.1e-13  Score=106.91  Aligned_cols=113  Identities=21%  Similarity=0.371  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeE-EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260           38 VNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVM-SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME  115 (174)
Q Consensus        38 v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~  115 (174)
                      +.+++..|..++++ ++.|..|||||+.+++..... ....|.+....+...|.|.++++.+.|.++.++|.-+.+|+.+
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            34555666655554 456889999999887543322 2334667788899999999999999999999999999888765


Q ss_pred             e-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          116 Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       116 ~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      . .|...|+.+.|.++.+.|++++.||.|.+|.+.-
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            4 6677899999999999999999999999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.49  E-value=7.5e-13  Score=102.93  Aligned_cols=124  Identities=23%  Similarity=0.374  Sum_probs=90.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++.-|+|+|.||.||+|. ++|....++.....+|.+++|.|+..-++-...+++.|=.+..+  ..+..+..|.+-|.+
T Consensus       115 dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n--~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  115 DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN--SKIIRWRAHDGLVLS  191 (737)
T ss_pred             CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc--cceeEEeccCcEEEE
Confidence            456689999999999996 56665555555567899999999766555555567777666554  345678899999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPN  130 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  130 (174)
                      +.|++..+.+++|++|-..++||-.....-....+..+|++++|+|+
T Consensus       192 ~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  192 LSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             eecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence            99999999999999999999999754221111123344444444444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.47  E-value=2.1e-11  Score=93.08  Aligned_cols=144  Identities=32%  Similarity=0.621  Sum_probs=113.0

Q ss_pred             EEEE-eeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            7 ILAT-ASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         7 ~l~s-~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +++. +..|+.+++||... ......+..|...+..+.|+|.+..++.+.  ++.+++|+....  .....+..|...+.
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~  202 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVS  202 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceE
Confidence            3444 45599999999998 777888888888899999999987655543  889999999764  34555667899999


Q ss_pred             EEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEE-eec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQM-EYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      +++|.+++. .+++++.|+.+++||.+...... .+. +.... ...|+|++..+++++.|+.+++||++....
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            999999887 56666999999999988655554 333 33332 227999998888999999999999997654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.46  E-value=2.7e-12  Score=97.93  Aligned_cols=165  Identities=13%  Similarity=0.223  Sum_probs=121.6

Q ss_pred             EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCCCC--eEEeecCCCCE
Q 042260            7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSPQP--VMSYDQHTNNV   81 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~v   81 (174)
                      .++.+..=|...+||.+++.. ..-+..|+..|++++++|... +++ ++.|++++|||++.-..+.  .+..-.|+..|
T Consensus       293 ~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV  372 (498)
T KOG4328|consen  293 SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV  372 (498)
T ss_pred             cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence            455666666899999988654 555666777999999999754 344 4568899999997643332  34344689999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCC----CCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLR----APVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~----~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+..|+|.+..|+|.+.|..|+|||..    ......++.|.      -.....+|.|+.+++++|-.-..|-++|-+.+
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            999999988889999999999999983    33333333332      12456789999999999988888999999999


Q ss_pred             cceeec--CcccceeEEEEEee
Q 042260          152 SCSCEL--GLQYGLRTFLFYHQ  171 (174)
Q Consensus       152 ~~~~~~--~~~~~~~~~~~~~~  171 (174)
                      +.++++  +.+..+....-+||
T Consensus       453 q~v~el~~P~~~tI~~vn~~HP  474 (498)
T KOG4328|consen  453 QMVCELHDPESSTIPSVNEFHP  474 (498)
T ss_pred             EEeeeccCccccccccceeecc
Confidence            977774  44445555555565

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=101.40  Aligned_cols=124  Identities=18%  Similarity=0.384  Sum_probs=91.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC--------------C--------------ceeEEeecCCCCeEEEEEcCCCceEEE-e
Q 042260            3 QPSVILATASYDKTIKFWEAKS--------------G--------------RCYRTIQYPDSQVNRLEITPNKHYLAA-A   53 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~--------------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~   53 (174)
                      .+..+++.+=.+|.+.+||.+-              +              ..+..+......|+..+|+|++.+++. +
T Consensus       230 g~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS  309 (636)
T KOG2394|consen  230 GSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS  309 (636)
T ss_pred             CCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEe
Confidence            3455677788899999997531              1              111222223346788899999998875 5


Q ss_pred             cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-ecccCcEEEEEEc
Q 042260           54 GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-YESRAAVNTVVLH  128 (174)
Q Consensus        54 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~  128 (174)
                      .|+.+||||..+.++..+.  .---+..++++|+|||++|++|++|..|.||.+...+++.. ..|++-|..++|.
T Consensus       310 qDGfLRvF~fdt~eLlg~m--kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  310 QDGFLRIFDFDTQELLGVM--KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cCceEEEeeccHHHHHHHH--HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            7999999999876433222  22346799999999999999999999999999988776643 4577888888887

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=4.5e-11  Score=89.20  Aligned_cols=163  Identities=13%  Similarity=0.206  Sum_probs=118.9

Q ss_pred             EEEEEeeCCCc--EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCC
Q 042260            6 VILATASYDKT--IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNN   80 (174)
Q Consensus         6 ~~l~s~s~D~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~   80 (174)
                      .++|-.+.+..  +++.+.+.+..+..+..+ ..|.++.++.+. +++ .-...|.|||+++.++  +.+.+   .+...
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~VrmNr~R-LvV-~Lee~IyIydI~~Mkl--LhTI~t~~~n~~g  131 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP-TSILAVRMNRKR-LVV-CLEESIYIYDIKDMKL--LHTIETTPPNPKG  131 (391)
T ss_pred             ceeEEEecCCCceEEEEEcccCceEEEEecC-CceEEEEEccce-EEE-EEcccEEEEeccccee--ehhhhccCCCccc
Confidence            34544444444  999999999999888765 469999887653 333 3345599999987643  32222   33445


Q ss_pred             EEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCc-EEEEeCCCCcceee
Q 042260           81 VMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGN-IRVWDLTANSCSCE  156 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~  156 (174)
                      +.++..+..+.+++--+  .-|.|.+||..+...+.++. |+.++.+++|+++|..+|+++..|+ ||++.+.+++.+++
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            66766666666766532  35899999999888777775 6789999999999999999999887 89999999999999


Q ss_pred             cCcccce--eEEEEEeecC
Q 042260          157 LGLQYGL--RTFLFYHQDM  173 (174)
Q Consensus       157 ~~~~~~~--~~~~~~~~~~  173 (174)
                      ++-....  +-.+.||+++
T Consensus       212 FRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             eeCCceeeEEEEEEECCCC
Confidence            8633222  4556667665

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=5.6e-12  Score=99.09  Aligned_cols=152  Identities=25%  Similarity=0.415  Sum_probs=110.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCC---------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSS---------------   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~---------------   66 (174)
                      .+..|++||.||+||||.+.+|.|+..+... +.|.+++|+|.+.  +++++-+..+.|.+---+               
T Consensus       411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence            4567999999999999999999999999865 4799999999643  444443222322221000               


Q ss_pred             ----C----------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCCeeEEee-cccCcE
Q 042260           67 ----S----------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAPVCQMEY-ESRAAV  122 (174)
Q Consensus        67 ----~----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~-~~~~~v  122 (174)
                          .                ...+...-.|...+..+.|+..|.+|++...+   ..|.|.++.....+..| ..+.-|
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v  569 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV  569 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence                0                00011122467889999999999999997664   57999999887777666 346779


Q ss_pred             EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +++.|+|...+++.+++. .|||||+.....+-++
T Consensus       570 q~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL  603 (733)
T KOG0650|consen  570 QRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKL  603 (733)
T ss_pred             eEEEecCCCceEEEEecc-ceEEEehhHHHHHHHH
Confidence            999999999999988764 7999999986655444

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=6.3e-11  Score=86.98  Aligned_cols=98  Identities=19%  Similarity=0.421  Sum_probs=82.3

Q ss_pred             CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCc-EEEEeCCCCeeEEeecc---cCcEEEEEEccC
Q 042260           55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-VKIWDLRAPVCQMEYES---RAAVNTVVLHPN  130 (174)
Q Consensus        55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~  130 (174)
                      -|++.|-|+......+....++|...+.+++.+.+|..+||+|..|+ |||||..++....++..   +..|.+++|+|+
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            46677777766544334556789999999999999999999999886 89999999888777754   467999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCc
Q 042260          131 QTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ...|+++|.-|++.++.++...
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecCC
Confidence            9999999999999999998643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=7.4e-12  Score=95.67  Aligned_cols=144  Identities=18%  Similarity=0.373  Sum_probs=112.0

Q ss_pred             CcE-EEEEeeCCCcEEEEECCCCceeEEe--ecC-CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            4 PSV-ILATASYDKTIKFWEAKSGRCYRTI--QYP-DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~-~l~s~s~D~~v~vwd~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      +++ .++++|.-+-+..||+++.+....-  ... ...+....+++++.+++.. -.+.|.+.-..+++...  .+. ..
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~--s~K-ie  344 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT--SFK-IE  344 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh--eee-ec
Confidence            344 8899999999999999887653221  111 2346677888988877654 56778887766664433  232 35


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE--EEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV--NTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      +.+..+.|+++++.|+..+.+|.|.+||+++..|+..+.....|  .+++.++++.+||+|+..|.|.|||.++
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            78999999999999999999999999999999999888655554  6778889999999999999999999774

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.43  E-value=3.4e-12  Score=101.59  Aligned_cols=146  Identities=19%  Similarity=0.346  Sum_probs=113.6

Q ss_pred             CcEEEEEeeCCCc-----EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC--CCeEEee
Q 042260            4 PSVILATASYDKT-----IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP--QPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~-----v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~--~~~~~~~   75 (174)
                      .+.++||+.....     |++|+..+...+..+..|.--|+.++|+|+++++. .+-|+++.+|.......  ......+
T Consensus       536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k  615 (764)
T KOG1063|consen  536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK  615 (764)
T ss_pred             CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence            4667777766443     89999999888888889998999999999998765 46799999998743211  1122356


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEe---ecccCcEEEEEEccC-CC----EEEEeeCCCcEEE
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQME---YESRAAVNTVVLHPN-QT----ELISGDQNGNIRV  145 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~---~~~~~~v~~~~~~~~-~~----~l~s~~~d~~i~i  145 (174)
                      .|+.-|.++.|+|++.+|+|+|.|..|++|.....  +.+..   .....+|+.+++.|- .+    .|+.|-+.|.|.+
T Consensus       616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL  695 (764)
T ss_pred             ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence            79999999999999999999999999999998765  33322   345678888888763 22    5778889999999


Q ss_pred             EeCC
Q 042260          146 WDLT  149 (174)
Q Consensus       146 wd~~  149 (174)
                      |...
T Consensus       696 ~~~~  699 (764)
T KOG1063|consen  696 WRRK  699 (764)
T ss_pred             Eecc
Confidence            9966

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=6.2e-11  Score=86.78  Aligned_cols=149  Identities=18%  Similarity=0.311  Sum_probs=108.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC--CceEEE-ecCCcEEEEEcCC-------CCCC
Q 042260            4 PSVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN--KHYLAA-AGNPHIRLFDVNS-------SSPQ   69 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~--~~~~~~-~~d~~i~i~d~~~-------~~~~   69 (174)
                      -|+.+||||.|++|+|||.+.    ..+-...+.|++.|..+.|.+.  |..+++ +.|++++||.-..       .++.
T Consensus        24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv  103 (361)
T KOG2445|consen   24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV  103 (361)
T ss_pred             cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence            366799999999999999543    3456777889999999988753  566664 5799999997521       1223


Q ss_pred             CeEEeecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCe------eEEeec--------ccCcEEEEEEccCC--
Q 042260           70 PVMSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPV------CQMEYE--------SRAAVNTVVLHPNQ--  131 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~--------~~~~v~~~~~~~~~--  131 (174)
                      ...++...+..|+.+.|.|  .|-.+++++.||.+|||+.-.+.      .+.++.        ...+..|+.|+|..  
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            3445666788999999998  57789999999999999965432      122222        35678899999754  


Q ss_pred             -CEEEEeeCC-----CcEEEEeCCCCc
Q 042260          132 -TELISGDQN-----GNIRVWDLTANS  152 (174)
Q Consensus       132 -~~l~s~~~d-----~~i~iwd~~~~~  152 (174)
                       +.++.|+.+     +.+.||......
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~  210 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENG  210 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCc
Confidence             345555544     379999988655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.40  E-value=1.2e-11  Score=90.80  Aligned_cols=146  Identities=14%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEc-CCCCCCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDV-NSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~   78 (174)
                      +...+|.+-....|.||.....+   ..++++.|+..|++++|+|.. .++.++.|+..++|.. ..+.+++.+.+-.++
T Consensus        21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN  100 (361)
T KOG1523|consen   21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN  100 (361)
T ss_pred             CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec
Confidence            45568888888899999876544   578888899999999999965 5556677889999998 556677777777899


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---E--eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---M--EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ..++++.|+|..+.|+.|+..+.|-+|-++...--   +  ....++.|.++.|+|+.-.|++|+.|+..|++...
T Consensus       101 rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay  176 (361)
T KOG1523|consen  101 RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY  176 (361)
T ss_pred             cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence            99999999999999999999999999988764321   1  12346779999999999999999999998887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.39  E-value=1e-11  Score=93.54  Aligned_cols=124  Identities=29%  Similarity=0.495  Sum_probs=96.7

Q ss_pred             CCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCC-------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260           34 PDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSP-------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI  104 (174)
Q Consensus        34 ~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i  104 (174)
                      ...++..+.|.++.. .++ +++|..||||-++....       .....+..|...|..+.|+++|..+++|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            345788899988654 555 45788999999864432       223346689999999999999999999999999999


Q ss_pred             EeCC--------C------C--eeEEe-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          105 WDLR--------A------P--VCQME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       105 wd~~--------~------~--~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      |...        +      +  ...+. ..|...|..++|+|+++++++++-|..+++||+..+.....+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence            9876        2      1  11111 235678999999999999999999999999999998766543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.38  E-value=2e-11  Score=88.74  Aligned_cols=159  Identities=23%  Similarity=0.373  Sum_probs=111.0

Q ss_pred             CcEEEEEeeCC-------CcEEEEECCCC---------ceeEEee-cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC
Q 042260            4 PSVILATASYD-------KTIKFWEAKSG---------RCYRTIQ-YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~s~s~D-------~~v~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~   66 (174)
                      +..+|+|+-.|       -.+.||.+...         +++..+. .+.+.|.++.|.|++..+++-.+..|.+|++...
T Consensus        75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~es  154 (370)
T KOG1007|consen   75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDES  154 (370)
T ss_pred             CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccC
Confidence            34566666553       23678876432         2333333 2345789999999988888888999999999765


Q ss_pred             CCCCe----EEeecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCE-EEEe
Q 042260           67 SPQPV----MSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTE-LISG  137 (174)
Q Consensus        67 ~~~~~----~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~s~  137 (174)
                      .....    .....++....+-+|+|  +++.+++. .|+++..||+|+..+...++  |...|.++.|+|+... |+++
T Consensus       155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~  233 (370)
T KOG1007|consen  155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC  233 (370)
T ss_pred             cchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc
Confidence            43111    11123566788889998  45565554 67899999999877655553  5678999999998765 6789


Q ss_pred             eCCCcEEEEeCCCCcc-eeecCcccce
Q 042260          138 DQNGNIRVWDLTANSC-SCELGLQYGL  163 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~~-~~~~~~~~~~  163 (174)
                      +.||.|+|||.+..+. +.+++...+-
T Consensus       234 gDdgyvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  234 GDDGYVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             CCCccEEEEeccCCCccccccCCCceE
Confidence            9999999999997654 4555555554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.37  E-value=6.5e-11  Score=91.63  Aligned_cols=144  Identities=16%  Similarity=0.246  Sum_probs=116.1

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC-------------------
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP-------------------   68 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------------------   68 (174)
                      ++||..+|.|.||+..+.+.......|+..|.++..-.+|.+++++.|+.|-.||-+-.+.                   
T Consensus       260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  260 VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK  339 (626)
T ss_pred             EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence            6799999999999998877776666899999999999999999977899999998421100                   


Q ss_pred             -C------------------CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc
Q 042260           69 -Q------------------PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP  129 (174)
Q Consensus        69 -~------------------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  129 (174)
                       .                  ......+|......++..|+...++|++.|+.+++|+  ..+...+.....++.++.|+|
T Consensus       340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP  417 (626)
T ss_pred             CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC
Confidence             0                  0011235677888899999999999999999999999  444555556678899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          130 NQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .+ .||.|+..|.-.+.|.++...+
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             cc-eEEEeeccceEEEEecccceeE
Confidence            99 8999999999999999985433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=1.5e-10  Score=90.82  Aligned_cols=167  Identities=14%  Similarity=0.168  Sum_probs=126.3

Q ss_pred             CCCCcEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEc------C--------------CCceE-EEecCC
Q 042260            1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEIT------P--------------NKHYL-AAAGNP   56 (174)
Q Consensus         1 ~~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~------~--------------~~~~~-~~~~d~   56 (174)
                      |.++..++|....||.+|+||...++....+...   .+....+.|.      |              +...+ .+...+
T Consensus         1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            4566778999999999999999988876666431   1223333331      1              11122 233567


Q ss_pred             cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE
Q 042260           57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  135 (174)
                      .+-+|+...++......-.+|-+.|.++-+..+-..|.|++.|..+..|+.........+. ....+.+++++|++..++
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            8899999888766555556899999999998888899999999999999999877665554 456789999999999999


Q ss_pred             EeeCCCcEEEEeCCCCcceeecCcccceeEEEEE
Q 042260          136 SGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFY  169 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (174)
                      +++  ++|++||+++++....++.+..+.+.+.|
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            886  57999999999999998766666544444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.37  E-value=1.5e-11  Score=89.49  Aligned_cols=140  Identities=17%  Similarity=0.327  Sum_probs=102.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEee---cCCCCeEEEEEcCCCc-eEEEe--cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQ---YPDSQVNRLEITPNKH-YLAAA--GNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      -.++||.|.||+||+||++.-+.---+.   .+..+...++|+++.. ++++-  ....+.|.|++... .++..+.+|.
T Consensus       209 ~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~  287 (364)
T KOG0290|consen  209 RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQ  287 (364)
T ss_pred             cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCc
Confidence            4689999999999999998755432222   2245678899998654 44432  45679999998764 5577788999


Q ss_pred             CCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCe------eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260           79 NNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPV------CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV  145 (174)
Q Consensus        79 ~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  145 (174)
                      ..|.+++|.|+ ...|+|++.|..+.+||+.+.-      .+..+.....|+.+.|++..+-=++...++++.|
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence            99999999985 5689999999999999997532      2233456788999999987665444444544443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.36  E-value=9.8e-11  Score=90.66  Aligned_cols=137  Identities=15%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +...++|++.|+++++|+  ..+.+-+... ..++.+++|+|.|.+.++...+...+.|.++..   .......+.++..
T Consensus       379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---lv~~~~d~~~ls~  452 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSGVVAVGTATGRWFVLDTETQD---LVTIHTDNEQLSV  452 (626)
T ss_pred             ChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcceEEEeeccceEEEEecccce---eEEEEecCCceEE
Confidence            345689999999999998  4555544443 356899999999955555567777777876642   2223333789999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCee---EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVC---QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                      ++|+|+|.+||-|+.|+.|.||-+....-   .....+.++|..+.|++++++|.+.+-|=.|..|
T Consensus       453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            99999999999999999999998754221   1122334899999999999999999999999999

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.9e-11  Score=89.78  Aligned_cols=110  Identities=17%  Similarity=0.267  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           38 VNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        38 v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      ..++.|++-|.+++.+ .||.+-|||+.+...  ...+.+|..+|.+++|+++|+.++|+|.|..|++||+..+.+.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            7789999999888765 789999999988753  3346689999999999999999999999999999999999999989


Q ss_pred             cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260          117 ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT  149 (174)
Q Consensus       117 ~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~  149 (174)
                      ...++|..+.|+|-. +.+++.--+..-.+-++.
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence            999999999999944 433333233333444444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=3.2e-12  Score=99.76  Aligned_cols=146  Identities=23%  Similarity=0.407  Sum_probs=112.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCC--------CCCCe
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSS--------SPQPV   71 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~--------~~~~~   71 (174)
                      ++.+|++||.|-.+.|||.-..+.++.+. +|...|-++.|-|.  +.++ .+++|..|+++|+...        .....
T Consensus        61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~  140 (758)
T KOG1310|consen   61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT  140 (758)
T ss_pred             CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence            57789999999999999998888888886 57778999999883  3444 4557889999999742        12334


Q ss_pred             EEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEE-ee----------cccCcEEEEEEccCCC-EEEEee
Q 042260           72 MSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQM-EY----------ESRAAVNTVVLHPNQT-ELISGD  138 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~-~~----------~~~~~v~~~~~~~~~~-~l~s~~  138 (174)
                      ..+.+|...|..++--|++ ..|.++++||+++=+|+|.+..-. ..          ..--...++.++|..+ +|+.|+
T Consensus       141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg  220 (758)
T KOG1310|consen  141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG  220 (758)
T ss_pred             hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC
Confidence            4567899999999988776 899999999999999998743211 00          0112457999999765 578899


Q ss_pred             CCCcEEEEeCC
Q 042260          139 QNGNIRVWDLT  149 (174)
Q Consensus       139 ~d~~i~iwd~~  149 (174)
                      .|-..++||.+
T Consensus       221 sdpfarLYD~R  231 (758)
T KOG1310|consen  221 SDPFARLYDRR  231 (758)
T ss_pred             CCchhhhhhhh
Confidence            99999999954

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.35  E-value=8e-13  Score=107.17  Aligned_cols=141  Identities=25%  Similarity=0.515  Sum_probs=107.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+..++||+.|.-+|||..+++.++.+..+|.+.++.++.+..+.+++++ .|.-|++|-++.+.  ++..+.+|++.|
T Consensus       200 rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgav  277 (1113)
T KOG0644|consen  200 RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAV  277 (1113)
T ss_pred             cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--hHHHHhccccce
Confidence            456789999999999999999999999999999999999999888877765 46679999999884  455567999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-----eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-----EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ++++|+|-.    +.+.||++++||.+-.-...     .+..+.-+.++.|..++..+++|+.|+..+.|.+.
T Consensus       278 taiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~  346 (1113)
T KOG0644|consen  278 TAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFE  346 (1113)
T ss_pred             eeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhh
Confidence            999999843    78999999999988211111     11223445555665566666666666665555544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.2e-11  Score=96.51  Aligned_cols=123  Identities=24%  Similarity=0.532  Sum_probs=97.5

Q ss_pred             EeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCC------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260           30 TIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNS------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV  102 (174)
Q Consensus        30 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v  102 (174)
                      +...|...+..+.|++... ++.++.++.+++|.+..      ....++.++.+|.++|.++++.+++..+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            3344556678888988654 55567899999999932      2356788899999999999999999999999999999


Q ss_pred             EEEeCCC---------CeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          103 KIWDLRA---------PVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       103 ~iwd~~~---------~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +.|++..         +...  ....+...+..++++.....|++++.||++|+|+.....
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC
Confidence            9997641         1111  123566788999999999999999999999999998643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=4.2e-11  Score=98.94  Aligned_cols=144  Identities=17%  Similarity=0.344  Sum_probs=116.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..+++|+--+.|.+|+....+......+|++.+-.+.++-++.++++ +.|+.+|+|++++.+......+ +|...+.
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-gHsaRvw  222 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-GHSARVW  222 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-cccceeE
Confidence            4567899999999999998743333357789999999999999888765 5788999999988765443333 6899999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+++.++  .++|++.|-+.++|+.+..... .+  +....+..++..++...+++++.|+.+++||+...
T Consensus       223 ~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  223 ACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999987  9999999999999977654433 23  23567999999999999999999999999999853

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.9e-10  Score=85.92  Aligned_cols=142  Identities=18%  Similarity=0.293  Sum_probs=106.3

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCC----C--------CCeEE
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSS----P--------QPVMS   73 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~----~--------~~~~~   73 (174)
                      ++++..|-+|++||-.. .+...++. ....|.+++|.|. +..++.+-...|.+|......    .        ..+..
T Consensus       113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhee
Confidence            67889999999999665 55555543 2456999999995 345555556679999864211    0        11223


Q ss_pred             eecCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           74 YDQHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .++| ..|+++.|+++|..+++++. |..|.|||..++..+... .....+.-+.|+|++..+++++-|+..++|+-...
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~  270 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS  270 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence            3445 67999999999999999886 567999999887765443 44567889999999999999999999999976654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.29  E-value=1.5e-11  Score=94.15  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=110.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC--------------------------------------CCeEEEEEc
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD--------------------------------------SQVNRLEIT   44 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~--------------------------------------~~v~~~~~~   44 (174)
                      .++..|+-|+.-|.|-.+|..+++....+...+                                      ..|..+.|-
T Consensus       139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFL  218 (545)
T KOG1272|consen  139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFL  218 (545)
T ss_pred             CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhccc
Confidence            456677888888888888887776655543221                                      123344444


Q ss_pred             CCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-eecccCcE
Q 042260           45 PNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EYESRAAV  122 (174)
Q Consensus        45 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~~~v  122 (174)
                      |--.+++++ ..+.++--|+.+++.  +..+..-.+.+..++-+|-+-.+.+|-..|+|.+|...+..... -+.|.++|
T Consensus       219 PyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  219 PYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             chhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence            444444443 334455556655532  22222334556666667777789999999999999988766543 34688999


Q ss_pred             EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEE
Q 042260          123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF  166 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  166 (174)
                      .++++.++|.++++.+.|..++|||++....+.....+..+...
T Consensus       297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l  340 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL  340 (545)
T ss_pred             ceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence            99999999999999999999999999987766555444444433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=7.9e-11  Score=97.94  Aligned_cols=147  Identities=15%  Similarity=0.288  Sum_probs=111.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCC--eEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            5 SVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQ--VNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      +.+++.|-.||+||+||.+...   .+...+.|...  |..+.+.++|  .+++++.+|.|++||++............|
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            4689999999999999977543   35666677665  8888888754  567778899999999987433333333333


Q ss_pred             C--C-CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-----e--cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           78 T--N-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-----Y--ESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        78 ~--~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-----~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      .  + ..+++..+++...+|+|+. +.|+||++........     |  .....+.+++|||....+++|..|.+|.||.
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            3  3 4889999999999999998 9999999875432211     1  1234579999999999999999999999998


Q ss_pred             CCCCc
Q 042260          148 LTANS  152 (174)
Q Consensus       148 ~~~~~  152 (174)
                      -..++
T Consensus      1380 ~~k~~ 1384 (1387)
T KOG1517|consen 1380 CEKPR 1384 (1387)
T ss_pred             cCCcC
Confidence            87654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.9e-10  Score=86.95  Aligned_cols=149  Identities=15%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             CcEEEEEeeCCCcEEEEECC------CCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAK------SGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      ++++|++|+.|..+++|.++      +.+.+..... |.+.|-+++|+..+.++.++ .++++...|+++.+...+...+
T Consensus        67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~  146 (609)
T KOG4227|consen   67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN  146 (609)
T ss_pred             CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence            47899999999999999864      3455554443 44779999999888877766 4678888999887554444434


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe----eEEeecccCcEEEEEEccCCCE-EEEeeCCCcEEEEeCCC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQTE-LISGDQNGNIRVWDLTA  150 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~  150 (174)
                      ..++.|-.+..+|..+.|++.+.++.|.+||.+...    .......+....++.|+|..+. |++.++.+.+.+||++.
T Consensus       147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence            455689999999999999999999999999998643    1222234566789999997765 56778888899999996


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus       227 ~~  228 (609)
T KOG4227|consen  227 QA  228 (609)
T ss_pred             cc
Confidence            54

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.26  E-value=9.9e-11  Score=86.34  Aligned_cols=135  Identities=22%  Similarity=0.364  Sum_probs=103.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCC---
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTN---   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~---   79 (174)
                      +.+++.|++-.++-||.-.....+..+-+|.+.|+.+.|.++|..+.++  .+..|..||++... .++..+..|..   
T Consensus       220 ~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rhv~~TN  298 (406)
T KOG2919|consen  220 SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-DPVYALERHVGDTN  298 (406)
T ss_pred             CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-chhhhhhhhccCcc
Confidence            4578999999999999888888888888899999999999987766554  47789999998653 44555556644   


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-e-eEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-V-CQMEYESRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      +-.-....|.+++|++|+.||.|++||++.. . +.....+..-++.++++|--+.+++++..
T Consensus       299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            3334445688999999999999999999873 2 22333456679999999997777776544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.26  E-value=1e-09  Score=77.78  Aligned_cols=119  Identities=20%  Similarity=0.344  Sum_probs=80.6

Q ss_pred             EEEEEcCCCceEEEe-c----------CCcEEEEEcCCCCCCCeEEee-cCCCCEEEEEEeeCCCEEEE--ecCCCcEEE
Q 042260           39 NRLEITPNKHYLAAA-G----------NPHIRLFDVNSSSPQPVMSYD-QHTNNVMAVGFQCDGNWMYS--GSEDGTVKI  104 (174)
Q Consensus        39 ~~~~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t--~~~dg~v~i  104 (174)
                      ..+.|+++|..++.- .          -+...+|.++..+.. ..... ...+.|.+++|+|+|+.|+.  |..++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            456788877654332 1          123456666443222 22222 23456999999999998654  456779999


Q ss_pred             EeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCCcceeecCcc
Q 042260          105 WDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       105 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      ||++ ...+..+. ...++.+.|+|+|++|++++.   .|.|.+||+++..+..+.++.
T Consensus        88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~  144 (194)
T PF08662_consen   88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS  144 (194)
T ss_pred             EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC
Confidence            9997 44455554 467899999999999998764   467999999988777666544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.26  E-value=2.4e-09  Score=81.73  Aligned_cols=143  Identities=14%  Similarity=0.246  Sum_probs=97.1

Q ss_pred             EEEEeeCCCcEEEEECCC-Cc--eeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC-CCCCCeEEeecCCCC
Q 042260            7 ILATASYDKTIKFWEAKS-GR--CYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS-SSPQPVMSYDQHTNN   80 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~   80 (174)
                      +.++...|++|++||+.+ ++  .+..+.. ......+.++|++.++.++  .++.+.+|++.. +........ .....
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~   81 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS   81 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence            456668899999999964 33  3444443 3456778999998876543  467789999963 222212111 12345


Q ss_pred             EEEEEEeeCCCEEEEecC-CCcEEEEeCCCC----eeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCC
Q 042260           81 VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP----VCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTAN  151 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~  151 (174)
                      ...++++++++++++++. ++.|.+||+...    ...........+..++++|+++.++++. .++.|.+||+++.
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            678999999998887764 889999998632    1222223334567788999999886554 5689999999863

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.26  E-value=4.6e-10  Score=94.62  Aligned_cols=167  Identities=16%  Similarity=0.255  Sum_probs=109.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCC-----e
Q 042260            5 SVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQP-----V   71 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~-----~   71 (174)
                      +.+++|||.||+||+||.+.-       ....++....+.+..+.+-+.+..++ ++.||.|++.++.......     .
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence            368999999999999996531       12333333456787777777666554 5678999999886521111     1


Q ss_pred             EEeecC-CCCEEEE-EEee-CCC-EEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           72 MSYDQH-TNNVMAV-GFQC-DGN-WMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        72 ~~~~~~-~~~v~~~-~~~~-~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                      ...+.+ .+.+..+ +|.. .+. .++-+..-+.+..||++........+   .++.|.+++.+|.++-++.|+..|.+-
T Consensus      1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred             ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence            111111 2233333 2332 233 56677778899999999765443332   356799999999999999999999999


Q ss_pred             EEeCCCCcceeecCcccce-eEEEEEee
Q 042260          145 VWDLTANSCSCELGLQYGL-RTFLFYHQ  171 (174)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~-~~~~~~~~  171 (174)
                      +||++=+...++|.++.+. ++-+-.||
T Consensus      1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             EEEeecCceeecccCcccCCcceEEeec
Confidence            9999976666666554443 44444444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.4e-10  Score=87.63  Aligned_cols=122  Identities=22%  Similarity=0.400  Sum_probs=99.6

Q ss_pred             eecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcCC----CCCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260           31 IQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNS----SSPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKI  104 (174)
Q Consensus        31 ~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i  104 (174)
                      +..|-+-|+.+.|+.++.++++++| ..+++|....    ..++++-.. ..|+..|.+++|+...+++++|..+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            3456677899999999998887754 5799998742    112333222 346799999999999999999999999999


Q ss_pred             EeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          105 WDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       105 wd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .|+.+...+..+.+.   ..|..+..+|..+.+++.+.+|.|.+||++...
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            999998888777654   489999999999999999999999999999755

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.24  E-value=5.9e-11  Score=94.65  Aligned_cols=121  Identities=19%  Similarity=0.349  Sum_probs=95.6

Q ss_pred             EEeecCCCCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260           29 RTIQYPDSQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV  102 (174)
Q Consensus        29 ~~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v  102 (174)
                      +++.+|...|.+++.+|++.+++++-      ...|++|...+-  .....+..|.-.|+.++|+|+|++|++.|.|+++
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence            44456777899999999999988752      234788886544  3344567899999999999999999999999999


Q ss_pred             EEEeCCCCee-EE----eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          103 KIWDLRAPVC-QM----EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       103 ~iwd~~~~~~-~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+|....... ..    ...|..=|.++.|+|++..++++|.|++|++|...+.
T Consensus       597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9999743221 11    1124445789999999999999999999999999987

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.23  E-value=3.3e-10  Score=88.37  Aligned_cols=162  Identities=16%  Similarity=0.276  Sum_probs=111.2

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEee----cCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC------C-------
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQ----YPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS------P-------   68 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~------~-------   68 (174)
                      ++.|=.-|.|.+.|....+...-+.    .....|+++.|-|.  +.++++-.++.+.+||.+-..      .       
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~  267 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD  267 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence            4445555666776655422111111    12467899999874  456666678888888753110      0       


Q ss_pred             -------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEE
Q 042260           69 -------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTEL  134 (174)
Q Consensus        69 -------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  134 (174)
                                   .++..+.-....+...+|+++|+++|+.+.||.+||+|..+.+....... -....|++|+||+++|
T Consensus       268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence                         11122222345678889999999999999999999999987655433322 2468999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCcceeec-CcccceeEEEEE
Q 042260          135 ISGDQNGNIRVWDLTANSCSCEL-GLQYGLRTFLFY  169 (174)
Q Consensus       135 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~  169 (174)
                      ++|++|--|.+|.+...+.+... .+++=|+.-.|=
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            99999999999999999988764 555655555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=4.8e-11  Score=93.34  Aligned_cols=129  Identities=21%  Similarity=0.293  Sum_probs=98.0

Q ss_pred             eEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCEEEEEEee--CCCEEEEecCCCcEEE
Q 042260           28 YRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKI  104 (174)
Q Consensus        28 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~i  104 (174)
                      ...+.+|.+-|+++.|+.+|.++++++|+ .+.|||.-..++. .....+|..+|.++.|.|  +.+.++||..|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll-hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL-HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee-eeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34556788899999999999998887655 5899998643222 223468999999999998  5678999999999999


Q ss_pred             EeCCCCee----------EEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC-cceeec
Q 042260          105 WDLRAPVC----------QMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN-SCSCEL  157 (174)
Q Consensus       105 wd~~~~~~----------~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~  157 (174)
                      +|+...+-          ...+ -|..+|..++..|++ +.+-++++||+||-+|++.+ .|..+.
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~  187 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE  187 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence            99975321          1111 244678889999998 56779999999999999964 455443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=4.7e-10  Score=88.70  Aligned_cols=133  Identities=15%  Similarity=0.193  Sum_probs=91.4

Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-c---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260           14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-G---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      +..|++||..... .+.+..+...+....|+|++..++.. .   +..|++||+.+++...+..+.++   ....+|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            5789999986544 45555666678999999999876543 2   23699999987654333333333   346799999


Q ss_pred             CCEEEEec-CCCcEEEE--eCCCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCC
Q 042260           90 GNWMYSGS-EDGTVKIW--DLRAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTA  150 (174)
Q Consensus        90 ~~~l~t~~-~dg~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~  150 (174)
                      |+.|+.++ .+|.+.||  |+..........+...+....|+|+++.++.++ .++..+||++..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            99888764 67876665  665544333223344577899999999776554 578888988764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.21  E-value=1.7e-10  Score=89.28  Aligned_cols=154  Identities=17%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             cEEEEECCCCceeEEeecC--CCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCC--CCCCeEEeecCCCCEEEEEEeeC
Q 042260           16 TIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSS--SPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      ++++||...-+....+..+  ...+..+.|+..+.+++++  +|..+++|.-...  +.......  ....-.|++..+.
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~--~gd~~~Cv~~~s~   90 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL--TGDNAFCVACASQ   90 (673)
T ss_pred             ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc--ccchHHHHhhhhc
Confidence            5899997654444333322  2338888898877665543  6777898865332  22222222  2234555555566


Q ss_pred             CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc-eeEEE
Q 042260           90 GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG-LRTFL  167 (174)
Q Consensus        90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~  167 (174)
                      ..++++|+..+.|+|||++...+...+ .|...|.++.++-++.+||+++..|.|.|..+.++...-.+..+++ ..|.+
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            789999999999999999965554433 5678899999999999999999999999999999888766665533 34566


Q ss_pred             EEee
Q 042260          168 FYHQ  171 (174)
Q Consensus       168 ~~~~  171 (174)
                      =||+
T Consensus       171 ~ys~  174 (673)
T KOG4378|consen  171 RYSP  174 (673)
T ss_pred             eccc
Confidence            6654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.19  E-value=3.8e-09  Score=80.67  Aligned_cols=145  Identities=11%  Similarity=0.218  Sum_probs=95.0

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeE-----Eee-cCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCC--CCCCeEEee
Q 042260            6 VILATASYDKTIKFWEAKSGRCYR-----TIQ-YPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSS--SPQPVMSYD   75 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~   75 (174)
                      .++++...+++|.+||+++...+.     .+. ........+.|+|++.+++.+  .++.+.+|+++..  .........
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            445677778999999997633221     111 123346789999998877554  3788999999742  222222221


Q ss_pred             cC------CCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCCe----eEEeecccCcEEEEEEccCCCEEEEeeC-CCcE
Q 042260           76 QH------TNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQTELISGDQ-NGNI  143 (174)
Q Consensus        76 ~~------~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i  143 (174)
                      ..      ......+.++|++++++++.. ++.|.+|++....    .............+.++|+++.|+++.. +++|
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence            11      112345789999999888754 7899999985432    2222222334567899999999987765 8899


Q ss_pred             EEEeCCC
Q 042260          144 RVWDLTA  150 (174)
Q Consensus       144 ~iwd~~~  150 (174)
                      .+|+++.
T Consensus       299 ~v~~~~~  305 (330)
T PRK11028        299 SVYEIDG  305 (330)
T ss_pred             EEEEEcC
Confidence            9998863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=3.2e-09  Score=83.98  Aligned_cols=163  Identities=14%  Similarity=0.151  Sum_probs=102.9

Q ss_pred             CcEEEEE-eeCCCcEEEE--ECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            4 PSVILAT-ASYDKTIKFW--EAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s-~s~D~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++..|+. .+.++.+.||  |+.+++. ..+..+...+....|+|++..++ ++ .++..+||+++........ . .+.
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l-~~~  334 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-V-GGR  334 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e-cCC
Confidence            4444544 5578876665  6665553 44444555677899999988654 33 3566788877543222111 1 222


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC--CCcceee
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT--ANSCSCE  156 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~  156 (174)
                      .  ....|+|+|+.|+..+.++ +.+||+.+......... .......|+|+++.|+.++.++.+.+|++.  ++++..+
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            2  3467999999998887765 55699987654322111 223567899999999999999999888874  4666676


Q ss_pred             cCcccceeEEEEEeecC
Q 042260          157 LGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       157 ~~~~~~~~~~~~~~~~~  173 (174)
                      +..+.......-+||-|
T Consensus       411 l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        411 LPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             ccCCCCCCCCcccCCCC
Confidence            65444444444445443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=8.1e-09  Score=75.44  Aligned_cols=160  Identities=17%  Similarity=0.239  Sum_probs=107.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEee---cC---CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQ---YP---DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .++-+-.+|.|.+|....-+....++   ..   .....++.|++.+.-++.+ .++.+.+-+......+....++.|..
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            34555667777777644322222222   11   1124567888877666555 45667755554443444446788999


Q ss_pred             CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEE--eecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCC-Ccc
Q 042260           80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQM--EYESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTA-NSC  153 (174)
Q Consensus        80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~-~~~  153 (174)
                      ++.-+.|+. +.+.+++|+.|+.+..||+|.+. .+.  ...|...|.+|.-+| ....+++|+.|..|++||.++ ++-
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            999999885 67899999999999999999554 221  123567788888887 456899999999999999996 445


Q ss_pred             eeecCcccceeEE
Q 042260          154 SCELGLQYGLRTF  166 (174)
Q Consensus       154 ~~~~~~~~~~~~~  166 (174)
                      +.+...+.++=|+
T Consensus       247 l~~~~v~GGVWRi  259 (339)
T KOG0280|consen  247 LFKAKVGGGVWRI  259 (339)
T ss_pred             cccCccccceEEE
Confidence            5666666666544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=6.2e-09  Score=86.44  Aligned_cols=142  Identities=16%  Similarity=0.331  Sum_probs=107.4

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCe----EEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQV----NRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ..++.+..+..+-+||...+..+..+...+...    .....+++...++++ .-+.+.+|+....+ .+. ...+|.+.
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~  177 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGS  177 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Ccc-eecccCCc
Confidence            356667777789999998887776665443211    122344454555543 46789999987332 223 35689999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      +..+.++.+|+++++.|.|.++|+|++.+.+..  ..|.|..+|..++|+|+  .++++++|-+.++|+.+-.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~  248 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT  248 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc
Confidence            999999999999999999999999999886543  35788899999999998  8999999999999966543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=8.9e-10  Score=95.90  Aligned_cols=142  Identities=18%  Similarity=0.350  Sum_probs=112.2

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .+-+||+.||++++|....++.+..++. ..+.|+.+.|+.+|.-+.. -+|+.+.+|...   +++...+++|......
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~---pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS---PKPYTSWQCHNKALSD 2297 (2439)
T ss_pred             ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---CcceeccccCCccccc
Confidence            3568999999999999999998887764 2367888889887665544 478999999986   4677788999998888


Q ss_pred             EEEeeCCCEEEEec---CCCcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           84 VGFQCDGNWMYSGS---EDGTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        84 ~~~~~~~~~l~t~~---~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ..|-.  ..+++++   .++.+.+||...+   .++. --|...++++++.|....+++||.+|.|++||++..+.
T Consensus      2298 f~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2298 FRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             eeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            88865  5556643   4688999996432   2233 34567889999999999999999999999999997543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=4.2e-09  Score=79.53  Aligned_cols=151  Identities=15%  Similarity=0.267  Sum_probs=97.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce---eEEeecCCCCeEEEEEcCC-CceEEEe--cC-CcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC---YRTIQYPDSQVNRLEITPN-KHYLAAA--GN-PHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~~~~~--~d-~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      .+.++|.+-.++...+++......   ......-....+.+.+... ...+++-  +| ..+.+|....+...   ..-+
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~---~~lG  149 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE---PILG  149 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc---hhhh
Confidence            456777777777766777554332   1111111122333433332 2222222  22 23455554433222   2347


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      |.+-++.+++++|+++|+|+..|..||+=.....-.+..|  .|..-|..+++-++.. |++||.|+++++||+++++++
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence            9999999999999999999999999999665544444333  5777899999877654 899999999999999999988


Q ss_pred             eecC
Q 042260          155 CELG  158 (174)
Q Consensus       155 ~~~~  158 (174)
                      ....
T Consensus       229 ~t~d  232 (390)
T KOG3914|consen  229 DTCD  232 (390)
T ss_pred             cccc
Confidence            5544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=3.5e-09  Score=80.23  Aligned_cols=149  Identities=18%  Similarity=0.254  Sum_probs=107.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCC---c-eEEEec--CCcEEEEEcCCCCC---CCe
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNK---H-YLAAAG--NPHIRLFDVNSSSP---QPV   71 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~---~-~~~~~~--d~~i~i~d~~~~~~---~~~   71 (174)
                      .++++|++-+.| ..+||++++|..+.....  .+.....+.|..++   . ++++..  .+.++.||+.....   .+.
T Consensus       196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~  274 (398)
T KOG0771|consen  196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL  274 (398)
T ss_pred             CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence            478899999999 899999999977665542  22334566776654   2 333332  34566666533221   111


Q ss_pred             EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.......+++++.+.+|++++-|+.||.|.|++..+.++.....  |...|+.+.|+|+.+.+++.+.|..+.+-.+.
T Consensus       275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            1122234579999999999999999999999999998876655443  45689999999999999999999888888887


Q ss_pred             CCc
Q 042260          150 ANS  152 (174)
Q Consensus       150 ~~~  152 (174)
                      -..
T Consensus       355 vd~  357 (398)
T KOG0771|consen  355 VDK  357 (398)
T ss_pred             ecc
Confidence            633

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=2.4e-09  Score=84.32  Aligned_cols=146  Identities=16%  Similarity=0.273  Sum_probs=108.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeec------CC-----CCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY------PD-----SQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQP   70 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~------~~-----~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~   70 (174)
                      ....+|+.|+.||.|-+||.++...+..+..      +.     ..|+++.|+.+|.-++.+ .+|.+.|||+++.++..
T Consensus       185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~  264 (703)
T KOG2321|consen  185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL  264 (703)
T ss_pred             CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence            3466889999999999999987665544432      21     238899999887766654 68899999999875443


Q ss_pred             eEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           71 VMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      +. -.....++..+.|.+.  ++.++|. ....++|||-.+++.....+....++++++-|++.+++++-.++.+..|-+
T Consensus       265 ~k-dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  265 VK-DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             ec-ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            32 2223456777788664  4456654 456899999999888777777778999999999999999988887777766


Q ss_pred             CC
Q 042260          149 TA  150 (174)
Q Consensus       149 ~~  150 (174)
                      ..
T Consensus       343 P~  344 (703)
T KOG2321|consen  343 PS  344 (703)
T ss_pred             cc
Confidence            53

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1.9e-08  Score=82.34  Aligned_cols=77  Identities=21%  Similarity=0.443  Sum_probs=63.0

Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---CeeE-Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---PVCQ-MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~-~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .|...+.+.+++|+++++++|..||+|.+|.=-.   ..-. ..++ |..+|++++|+++|..|++||..|.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3566688999999999999999999999997322   1111 1122 457899999999999999999999999999999


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      ++
T Consensus       283 ~~  284 (792)
T KOG1963|consen  283 GK  284 (792)
T ss_pred             CC
Confidence            87

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.06  E-value=1.7e-08  Score=75.01  Aligned_cols=140  Identities=19%  Similarity=0.278  Sum_probs=102.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      -.+|-....|+.|.+|++...+--.++.+..+.+....|+|+|. ++.++ -+-.|.+|.+.+.+..   -.+..+..+.
T Consensus        61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~k  137 (447)
T KOG4497|consen   61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVK  137 (447)
T ss_pred             eeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCce
Confidence            44566788899999999999988899988888899999999984 55554 3667899999875321   1223345567


Q ss_pred             EEEEeeCCCEEEEecC------------------------------------CCcEEEEeCCCCeeEEeecccCcEEEEE
Q 042260           83 AVGFQCDGNWMYSGSE------------------------------------DGTVKIWDLRAPVCQMEYESRAAVNTVV  126 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~  126 (174)
                      ..+|+++|++.+..++                                    +..+.+||---...+..++.+-.+..++
T Consensus       138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~  217 (447)
T KOG4497|consen  138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVE  217 (447)
T ss_pred             eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEE
Confidence            8888888887665542                                    2345556543333344455567789999


Q ss_pred             EccCCCEEEEeeCCCcEEEEe
Q 042260          127 LHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus       127 ~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      ++|.+++++.|+.|+.+|+-|
T Consensus       218 wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  218 WSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eccccceEEeeccchhhhhhc
Confidence            999999999999999988743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.06  E-value=5e-09  Score=84.29  Aligned_cols=144  Identities=18%  Similarity=0.225  Sum_probs=104.1

Q ss_pred             EEEEEeeCCCcEEEEE---CCCCc-----eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260            6 VILATASYDKTIKFWE---AKSGR-----CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd---~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ..++.|..+|.|.-=+   .+...     .......|.+.|..+.++|-. +++.+++|..++||.-... ..++..+..
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-~~Pl~~~~~  439 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-ASPLLSLDS  439 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-CCcchhhhh
Confidence            3477899999876622   22111     122344577889999999854 4566667999999997632 245555667


Q ss_pred             CCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe--eEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           77 HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV--CQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      +...+.+++|+| ....|+++..||.+.+||+....  .+.... .....+.+.+++++..|+.|...|++.+|++..
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            777799999998 46689999999999999986532  222221 134557778888899999999999999999964

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.04  E-value=1.1e-09  Score=87.76  Aligned_cols=140  Identities=12%  Similarity=0.205  Sum_probs=109.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.-|+.+..| .+.+||...|..+.+++.|..-|.+++|+.+|+.++++ .|..+-+|.-.-   ...+.+. |...+-
T Consensus        23 DGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYS-H~D~IQ   97 (1081)
T KOG1538|consen   23 DGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYS-HNDAIQ   97 (1081)
T ss_pred             CCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeec-cCCeee
Confidence            44444444433 59999999999999999999999999999999998876 566788998633   3455554 789999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ++.|+|-...++|++-. ..-+|......++ ......+|.+++|..+|.+++.|-.||+|.|=+-..
T Consensus        98 CMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             EeecCchHHHhhhcchh-hccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            99999988888988765 4677877654332 234457899999999999999999999998876543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=9.8e-09  Score=80.94  Aligned_cols=149  Identities=18%  Similarity=0.300  Sum_probs=110.8

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecCC----
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQHT----   78 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~----   78 (174)
                      |..++....|.=++++.|.-+..+....+.++.+..++...++++++ ++.+..||.+..+....+..    +.|.    
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            33444445678888999998888887778899999999888887765 88999999987643222221    1222    


Q ss_pred             -CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccC--CCEEEEeeCCCcEEEEeCCCCcc
Q 042260           79 -NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPN--QTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        79 -~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                       ..|+++.|..+|-.++.|..+|.+.|||+|.......-.|  ..+|..+.|.+.  ++.|++. ....++|||-.+++-
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence             3499999999999999999999999999998776655544  468999999876  4456654 335799999998764


Q ss_pred             eeec
Q 042260          154 SCEL  157 (174)
Q Consensus       154 ~~~~  157 (174)
                      --.+
T Consensus       307 ~asi  310 (703)
T KOG2321|consen  307 MASI  310 (703)
T ss_pred             eeec
Confidence            4333

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.04  E-value=1e-08  Score=75.62  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCC-CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-C
Q 042260           34 PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSS-PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-P  110 (174)
Q Consensus        34 ~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~  110 (174)
                      -..+|++.+|+++...++.+ .+..+.||.....+ +.+..++..|...++++.|.+..+.|++|+.|..-++|.... .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            34679999999998888776 45689999988776 778888899999999999999999999999999999999843 2


Q ss_pred             ee---EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          111 VC---QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       111 ~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ..   ...+..+..+.++.|+|+++.+++|+..+.|.+|-++..
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence            22   122356778999999999999999999999999988754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.03  E-value=5.1e-08  Score=76.81  Aligned_cols=145  Identities=11%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      .++-.+++=|...|.|-+|++..|+.-..+.  .|.+.|..+.++.+ +.+-++++|..+..|+....  ..+..+.+.+
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~  144 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQK  144 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccCC
Confidence            4556678889999999999999998877775  47788998888775 44445567888899998766  3445567788


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccC-----CCEEEE-eeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPN-----QTELIS-GDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~l~s-~~~d~~i~iwd~~~  150 (174)
                      ..+.+++++++++.+++++  +.|++||+++.+.+.+|. |.++|+++.|-.+     |.+|++ ...+..+.+|-++.
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8999999999999999887  789999999999999885 5788999999776     555554 44566788898875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.03  E-value=1.1e-09  Score=87.66  Aligned_cols=109  Identities=21%  Similarity=0.428  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      .|..++|.|+|..++.+.+..+.+||.+.+.  ...++.+|...|.+++|+.+|+.+++|+.|..|.+|.-+- +-...+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee
Confidence            5889999999987766667789999998874  3556779999999999999999999999999999998653 334557


Q ss_pred             cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .|...|+|+.|+|-...|++++-+ ..-+|...
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~  122 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPE  122 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchh-hccccChh
Confidence            889999999999988888877543 24455443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=5.3e-09  Score=78.80  Aligned_cols=126  Identities=11%  Similarity=0.200  Sum_probs=102.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ...|||+..-+.+|+||.+.+. ++..+...+.++.++...|.+.++.++ .-+.+..||++.+... ...+.+-.+.+.
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~-g~~~kg~tGsir  294 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL-GCGLKGITGSIR  294 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee-ccccCCccCCcc
Confidence            4568999999999999998654 577777778899999999999988776 4567999999887432 233667788999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ  131 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  131 (174)
                      ++...|.+.++++++-|+.+||+|+.+........-++.++.+.+.++-
T Consensus       295 sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             eEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            9999999999999999999999999986655555556777888886543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.00  E-value=3.8e-09  Score=82.71  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=104.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +..++.++.||.+.+-+ +.++...++..|.+.+.+-.|+|+|. ++.++.||.|++|.-. +.....  .......|.+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRSt--l~Q~~~~v~c  150 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRST--VVQNEESIRC  150 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHH--HhhcCceeEE
Confidence            45678888999988886 56777788888888899999999986 5566789999999863 322222  2234577999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ++|.|+.+.++-+.. +.+.|=-+........+ .|..-|.++.|+|..+.+++|++|-.-++||-.-
T Consensus       151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             EEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence            999998776655543 34555445433333333 4566789999999999999999999999999764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.00  E-value=2.2e-10  Score=93.38  Aligned_cols=112  Identities=14%  Similarity=0.346  Sum_probs=94.7

Q ss_pred             ecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC
Q 042260           32 QYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP  110 (174)
Q Consensus        32 ~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~  110 (174)
                      .+|-.+|.++.|...+..++++. |..+|||..++.  .+.....+|...++.++.+.+..+++++|.|..|++|-+...
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            45666799999999998887764 567899997766  556667899999999999999999999999999999999987


Q ss_pred             eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          111 VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       111 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ..+..+ .+.+.|++++|+|-    .+.+.||++++||.+
T Consensus       265 ~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDAR  300 (1113)
T ss_pred             chHHHHhccccceeeeccCcc----ccCCCCCceEecccc
Confidence            766444 67789999999993    377889999999998

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.99  E-value=1.3e-08  Score=81.98  Aligned_cols=144  Identities=19%  Similarity=0.270  Sum_probs=95.8

Q ss_pred             EEEeeCCCcEEEEECCCCce------eEEee------cCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCC--C---
Q 042260            8 LATASYDKTIKFWEAKSGRC------YRTIQ------YPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSS--P---   68 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~--~---   68 (174)
                      ++++|.||.|..|+++.-..      .....      .....++.+.|.+..  .+++++..|.|.--......  .   
T Consensus       308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~  387 (555)
T KOG1587|consen  308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS  387 (555)
T ss_pred             eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence            67888899999998754221      11111      122357888898753  46777777766432222111  1   


Q ss_pred             -CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-CCeeEEeecc-cCcEEEEEEccCCCEE-EEeeCCCcEE
Q 042260           69 -QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-APVCQMEYES-RAAVNTVVLHPNQTEL-ISGDQNGNIR  144 (174)
Q Consensus        69 -~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l-~s~~~d~~i~  144 (174)
                       +....+..|.+.+..+.++|=+..+++.+.|-.++||+.. ...+...+.. ...+.+++|+|....| +++..||.|.
T Consensus       388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence             2244566789999999999855444444449999999987 4444444433 4459999999998765 5666799999


Q ss_pred             EEeCCCC
Q 042260          145 VWDLTAN  151 (174)
Q Consensus       145 iwd~~~~  151 (174)
                      +||+...
T Consensus       468 iWDLl~~  474 (555)
T KOG1587|consen  468 IWDLLQD  474 (555)
T ss_pred             hhhhhcc
Confidence            9999964

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=2.7e-09  Score=84.37  Aligned_cols=141  Identities=20%  Similarity=0.285  Sum_probs=107.9

Q ss_pred             cEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      |.+|+|...   ...|.|+++........++...+.+..+.|+|...+++.+....++|||+...  ..+.++...-..+
T Consensus       533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq--elvKkL~tg~kwi  610 (733)
T KOG0650|consen  533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ--ELVKKLLTGSKWI  610 (733)
T ss_pred             CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH--HHHHHHhcCCeee
Confidence            556666554   34588888877666555655567799999999988887777889999999654  2233333344668


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCe-eEE-eecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-CQM-EYESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      ..++.++.|..++.|+.|+.+..+|+.... ... ...|...+.+++||+.-+.+++|+.||++.++-
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            899999999999999999999999987542 222 235677899999999999999999999988764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=2.2e-07  Score=73.62  Aligned_cols=133  Identities=14%  Similarity=0.204  Sum_probs=88.3

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-e---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ..|.++|...++. +.+..+...+....|+|++..++. +   ++..+.+|++.+++...+..+.   .......|+|+|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEECCCC
Confidence            3688888775543 334445567889999999986653 2   2346899999876543333232   334567899999


Q ss_pred             CEEEEe-cCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCcEEEE--eCCCC
Q 042260           91 NWMYSG-SEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVW--DLTAN  151 (174)
Q Consensus        91 ~~l~t~-~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~  151 (174)
                      +.|+.. +.+|  .|.+||+.+............+....|+|+++.|+..+. ++...+|  |+..+
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence            988754 4444  588899987665443344456788999999998876664 3444555  65544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=2.4e-07  Score=73.54  Aligned_cols=133  Identities=20%  Similarity=0.291  Sum_probs=91.0

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ..|.++|.. |.....+..+...+....|+|++..++..    ++..|.+||+.++....   +..+...+....|+|+|
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECCCC
Confidence            378888875 44455565666789999999998866543    24579999998764332   23345567788999999


Q ss_pred             CEEE-EecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCC
Q 042260           91 NWMY-SGSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTAN  151 (174)
Q Consensus        91 ~~l~-t~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~  151 (174)
                      +.|+ +.+.++.  |.+||+.+.................|+|+++.|+..+. +|  .|.+||+..+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            9765 5555555  77778877654432233344567899999998876653 33  5888887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=8.3e-09  Score=81.44  Aligned_cols=151  Identities=20%  Similarity=0.228  Sum_probs=104.2

Q ss_pred             cEEEEEeeCCCcEEEEECCC-------CceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee--
Q 042260            5 SVILATASYDKTIKFWEAKS-------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD--   75 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--   75 (174)
                      ..-++++|.|++||+|.++.       ..|..+++.|..+|.++.|-.+...+++ -|+.+.+||.-.+.+.......  
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-cD~giHlWDPFigr~Laq~~dapk  825 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-CDGGIHLWDPFIGRLLAQMEDAPK  825 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-ccCcceeecccccchhHhhhcCcc
Confidence            34578999999999998753       2355566678888999988776655554 4788999996444322211111  


Q ss_pred             -cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---c---cCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           76 -QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---S---RAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        76 -~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                       +....+.++......-.++-++...+|+++|.|.......+.   .   ..-+.++++.|.|+.++++-++|.|-+-|-
T Consensus       826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence             112334444332233345555889999999999866554432   1   244789999999999999999999999999


Q ss_pred             CCCcceee
Q 042260          149 TANSCSCE  156 (174)
Q Consensus       149 ~~~~~~~~  156 (174)
                      +++...-+
T Consensus       906 R~G~vINs  913 (1034)
T KOG4190|consen  906 RNGKVINS  913 (1034)
T ss_pred             CCCceecc
Confidence            99875543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=1.1e-07  Score=77.96  Aligned_cols=142  Identities=17%  Similarity=0.262  Sum_probs=105.9

Q ss_pred             EeeCCCcEEEEECCCCcee---EEe-ecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC--CCCCCeEEeecCCCCEE
Q 042260           10 TASYDKTIKFWEAKSGRCY---RTI-QYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS--SSPQPVMSYDQHTNNVM   82 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~   82 (174)
                      ..-.+..+.+|+...+...   +.. ..|...+++.+++|.+.+++++ .||.|.+|.--.  ........+.=|...|.
T Consensus       176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~  255 (792)
T KOG1963|consen  176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN  255 (792)
T ss_pred             EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence            3334556788887664411   111 1244447889999999988877 578899996422  11112223444778999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      +++|+++|.++++|+.++.+-+|.+.++..+......++|..+.++|++...+...+|..|.+-...+.
T Consensus       256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            999999999999999999999999999886655567899999999999999999999999888877543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=2.5e-07  Score=69.62  Aligned_cols=140  Identities=18%  Similarity=0.319  Sum_probs=97.4

Q ss_pred             EEEEEeeCCCcEEEEECCC----Cc--------eeEEeec-CCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCC
Q 042260            6 VILATASYDKTIKFWEAKS----GR--------CYRTIQY-PDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQP   70 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~----~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~   70 (174)
                      .-|+.|...| |.+|....    +.        +...++. ...+|+.+.|++++..++++  ++..|.|||..++...+
T Consensus       154 selavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p  232 (445)
T KOG2139|consen  154 SELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP  232 (445)
T ss_pred             ceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence            3465665554 89997432    11        1112222 13579999999999887765  57789999999887666


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      +..  ...+.+.-+.|+|++.+|.++.-|+.-++|+...... ....-....|+..+|+|.|++|+-+.. |.=++|.+.
T Consensus       233 L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~  309 (445)
T KOG2139|consen  233 LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT  309 (445)
T ss_pred             ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence            552  3457788999999999999999999999997654332 222334558999999999998764433 234555555

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.1e-08  Score=76.31  Aligned_cols=152  Identities=18%  Similarity=0.328  Sum_probs=108.8

Q ss_pred             EEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCC----CCCCeEEeecCCCCEEE
Q 042260            9 ATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSS----SPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         9 ~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v~~   83 (174)
                      ++.|.+..+-+-|+++|.. +++. ..+.|.++.|...+.++ .+.-++.|...|++..    .......  -|...+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence            4556677788888887643 2333 34567788888765555 4557889999999865    2222222  47788998


Q ss_pred             EEEee-CCCEEEEecCCCcEEEEeCCCCee---EEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           84 VGFQC-DGNWMYSGSEDGTVKIWDLRAPVC---QMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        84 ~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +..-. ++.++.+.+-+|.|++||.|--++   +.+++.+   ..-.-+.+++....+++++.|-..|||.+..+...++
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            88766 678888899999999999987666   5555322   2233445667778899999999999999999999988


Q ss_pred             cCccccee
Q 042260          157 LGLQYGLR  164 (174)
Q Consensus       157 ~~~~~~~~  164 (174)
                      ++-++.+.
T Consensus       384 ipf~~s~~  391 (425)
T KOG2695|consen  384 IPFPYSAS  391 (425)
T ss_pred             cCCCCccc
Confidence            87666553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=3.2e-07  Score=72.62  Aligned_cols=146  Identities=18%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecCCcEEEEEc--CCCCCCCeEEeec
Q 042260            4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNPHIRLFDV--NSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~~i~i~d~--~~~~~~~~~~~~~   76 (174)
                      +++.|+..+.+   ..|.+||+.+++.... ...........|+|++..++ + ..++...||.+  ..+.   ...+..
T Consensus       206 DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~  281 (427)
T PRK02889        206 DGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQ  281 (427)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCC
Confidence            45556555432   3599999998876433 22233456789999987654 3 34555566654  4332   222333


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~  150 (174)
                      +........|+++|+.|+..+. ++...+|.+  ...................|+|+++.|+..+.++   .|.+||+.+
T Consensus       282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence            4444566789999998876554 566677765  3333222112222334578999999988766543   599999987


Q ss_pred             Ccc
Q 042260          151 NSC  153 (174)
Q Consensus       151 ~~~  153 (174)
                      +..
T Consensus       362 g~~  364 (427)
T PRK02889        362 GQV  364 (427)
T ss_pred             CCe
Confidence            653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=3.1e-09  Score=82.15  Aligned_cols=149  Identities=21%  Similarity=0.320  Sum_probs=104.9

Q ss_pred             EEEEEeeCCCcEEEEECCCCce------eEEee------cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCC---C-
Q 042260            6 VILATASYDKTIKFWEAKSGRC------YRTIQ------YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSS---P-   68 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~---~-   68 (174)
                      ..+++|+.|.-+++||.+.-..      +..+-      .....|++++++.+ +.++++-.|..|.++.-.-+.   + 
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence            3688999999999999653211      12221      12345899999954 556666678888888432110   0 


Q ss_pred             ------CC-eEEeecCCCC--EEEEEE-eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEe
Q 042260           69 ------QP-VMSYDQHTNN--VMAVGF-QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        69 ------~~-~~~~~~~~~~--v~~~~~-~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~  137 (174)
                            .. ...|++|++.  |..+-| -|...++++||..|.|.||+-.+.+.+..... +..|+|+.-||.-+.||+.
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence                  11 1226788764  455554 47889999999999999999988776654432 3479999999999999999


Q ss_pred             eCCCcEEEEeCCCCcce
Q 042260          138 DQNGNIRVWDLTANSCS  154 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~~~  154 (174)
                      +-|..|+||-....+..
T Consensus       455 Gid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  455 GIDHDVKIWTPLTAERA  471 (559)
T ss_pred             CCccceeeecCCccccc
Confidence            99999999998554443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=3.7e-07  Score=72.45  Aligned_cols=144  Identities=12%  Similarity=0.097  Sum_probs=93.2

Q ss_pred             CcEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecCC--cEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNP--HIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~--~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +++.|+-.+.   +..|.+||+.+++... +......+....|+|++..++ + ..++  .|.+||+.++...   .+..
T Consensus       212 DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt~  287 (435)
T PRK05137        212 NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTD  287 (435)
T ss_pred             CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---EccC
Confidence            4455555443   4689999998886543 333444567789999987554 3 2333  4777788765432   2334


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~  150 (174)
                      +........|+|+|+.|+..+. +|  .|.++|+..............+....|+|+++.|+..+.+   ..|.+||+..
T Consensus       288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            4455667899999998887664 33  6888888765443322234456678899999998865543   3588888754


Q ss_pred             C
Q 042260          151 N  151 (174)
Q Consensus       151 ~  151 (174)
                      +
T Consensus       368 ~  368 (435)
T PRK05137        368 S  368 (435)
T ss_pred             C
Confidence            3

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=4.4e-07  Score=71.96  Aligned_cols=146  Identities=17%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             CcEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecC--CcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGN--PHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d--~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ++..|+..+.   +..|.+||+.+++..... ..........|+|++..++ + ..+  ..|.+||+.+++..   .+..
T Consensus       214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---~lt~  289 (433)
T PRK04922        214 DGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---RLTN  289 (433)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---ECcc
Confidence            4555665553   346999999887654322 2233345678999987554 3 333  35899999776432   2333


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~  150 (174)
                      +........|+++|+.++..+. +|.  +.++|+..................+|+|+++.|+..+.++   .|.+||+.+
T Consensus       290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence            4444567899999998887664 444  6666766554332212223345689999999987654332   599999977


Q ss_pred             Ccc
Q 042260          151 NSC  153 (174)
Q Consensus       151 ~~~  153 (174)
                      +..
T Consensus       370 g~~  372 (433)
T PRK04922        370 GSV  372 (433)
T ss_pred             CCe
Confidence            653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.8e-07  Score=73.07  Aligned_cols=148  Identities=12%  Similarity=0.103  Sum_probs=91.0

Q ss_pred             EEEEEeeCCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cEEEEEcCCCCCCCeEEeecCCC
Q 042260            6 VILATASYDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         6 ~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .++++.+.++  .|++||+.+++.. .+..+........|+|++..++...  ++  .+.++|+.+++...+ ..  +..
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~--~g~  336 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF--QGN  336 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec--CCC
Confidence            4555666666  5999999887653 3333333345689999988665433  22  366667665543322 22  223


Q ss_pred             CEEEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCCcc
Q 042260           80 NVMAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTANSC  153 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~  153 (174)
                      .....+|+|+|+.|+..+.++   .|.+||+.+.... .+..........|+|+++.|+..+.+   +.|.++|+.. ..
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~  414 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RV  414 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence            344678999999988765432   6999999776543 23333234567899999988765543   3477777743 33


Q ss_pred             eeecCc
Q 042260          154 SCELGL  159 (174)
Q Consensus       154 ~~~~~~  159 (174)
                      ...++.
T Consensus       415 ~~~l~~  420 (433)
T PRK04922        415 RQRLVS  420 (433)
T ss_pred             eEEccc
Confidence            444443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.88  E-value=7.5e-08  Score=81.72  Aligned_cols=157  Identities=20%  Similarity=0.303  Sum_probs=105.0

Q ss_pred             CCCCcEEEEEeeCCCcEEEEECCCC--c-----eeEEeecC-CCCeEEE-EEcC--CCceE-EEecCCcEEEEEcCCCCC
Q 042260            1 MAQPSVILATASYDKTIKFWEAKSG--R-----CYRTIQYP-DSQVNRL-EITP--NKHYL-AAAGNPHIRLFDVNSSSP   68 (174)
Q Consensus         1 ~~~~~~~l~s~s~D~~v~vwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~--~~~~~-~~~~d~~i~i~d~~~~~~   68 (174)
                      |.+.++.+|.|+.||.|++.++...  +     ..+..+.+ ++.+.++ ++..  ....+ ++...+.+..||.+....
T Consensus      1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            4566778999999999999998652  1     11111111 2334443 3332  22233 444556789999976432


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCC---EEE-Eee-CCC
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQT---ELI-SGD-QNG  141 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~---~l~-s~~-~d~  141 (174)
                      .-....+...+.|++++.++.+.+++.|...|.+.+||+|-...+..+++  ..++..+..+|..+   ..+ +++ ..+
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence            22222333458899999999999999999999999999998776665544  56777777777543   334 444 467


Q ss_pred             cEEEEeCCCCcceeec
Q 042260          142 NIRVWDLTANSCSCEL  157 (174)
Q Consensus       142 ~i~iwd~~~~~~~~~~  157 (174)
                      .|.+|+++++.|.+-+
T Consensus      1266 evs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             ceeeeecccCcceEEE
Confidence            8999999999776543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=5.4e-09  Score=91.24  Aligned_cols=140  Identities=18%  Similarity=0.371  Sum_probs=105.4

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .-+..+..||.+-+|... .+..-+.++|+....+..|-.  .+++++    .++.+.+||-.-....... ..+|...+
T Consensus      2264 nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~ga 2339 (2439)
T KOG1064|consen 2264 NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGA 2339 (2439)
T ss_pred             CceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCc
Confidence            345667778999999866 566667777877777777755  333332    3567999996543322222 37999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +++++-|....|++|+.+|.|++||++..+..+++..        ++ ....+.+|+..|.|+||++........++
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999999999999999999999998776555543        44 66788999999999999999876665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.88  E-value=5.7e-07  Score=70.72  Aligned_cols=145  Identities=17%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-c--CCcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-G--NPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~--d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +++.|+.++.+   ..|++||+.+++..... .....+....|+|++..++ +. .  +..|.+||+.++....   +..
T Consensus       200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~---l~~  275 (417)
T TIGR02800       200 DGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR---LTN  275 (417)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE---CCC
Confidence            34455554433   47999999988654332 2334456688999987554 32 2  2358888887654322   223


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~  150 (174)
                      +........|+++|+.|+..+. ++  .|.++|+..............+....|+|+++.++.++.++   .|.+||+.+
T Consensus       276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            3344456689999998876654 33  57778887655433323345567788999999988877665   789999887


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus       356 ~~  357 (417)
T TIGR02800       356 GG  357 (417)
T ss_pred             CC
Confidence            53

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.86  E-value=8.6e-09  Score=74.36  Aligned_cols=97  Identities=24%  Similarity=0.439  Sum_probs=76.7

Q ss_pred             EEeeCCCcEEEEECCC--Cce-eE-EeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            9 ATASYDKTIKFWEAKS--GRC-YR-TIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         9 ~s~s~D~~v~vwd~~~--~~~-~~-~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++|+.+..+..|.++.  +.+ ++ ........+..+...|+++++++ ++|+.||+|..++.  .++..+..|...|.+
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPLAVLKYHSAGVNA  298 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC--CchhhhhhhhcceeE
Confidence            5677888899998753  332 11 12223345888899999999886 57999999999887  445556679999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDL  107 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~  107 (174)
                      ++|+|+...+|+++.|++|-+|++
T Consensus       299 vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999986

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.85  E-value=3.8e-08  Score=72.00  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             EEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCC-ceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            7 ILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNK-HYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      -++++..+|.+.+-+.....  .++.++.|+.+++.+.|+... .++.+ +.|+.+..||++.++.-.....+.|...|.
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~  214 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV  214 (339)
T ss_pred             eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence            36677778888744433332  244677888899999998643 34444 467789999999544222222446788888


Q ss_pred             EEEEee-CCCEEEEecCCCcEEEEeCCC-CeeEEeecccCcEEEEEEccCCC--EEEEeeCCCcEEEEeCCCCcce
Q 042260           83 AVGFQC-DGNWMYSGSEDGTVKIWDLRA-PVCQMEYESRAAVNTVVLHPNQT--ELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ++..++ .+.+|+||+.|-.|++||.|. .++...-.-...|..+..+|...  .++++-.+ ..++-+++.+...
T Consensus       215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE  289 (339)
T ss_pred             EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc
Confidence            888764 678999999999999999984 44444334457789999998544  23333333 3666666655433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=7.3e-07  Score=70.67  Aligned_cols=145  Identities=12%  Similarity=0.091  Sum_probs=90.2

Q ss_pred             CcEEEEEee---CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC--CcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATAS---YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN--PHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s---~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d--~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +++.|+-.+   .+..+.+||+.+|+...... .........|+|++..++..  .+  ..|.+||+.++....   +..
T Consensus       209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---lt~  284 (429)
T PRK03629        209 DGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTD  284 (429)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ccC
Confidence            444454332   24569999998876433222 22234568899999866532  23  358889987764322   223


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCC-CcEEEE--eCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSED-GTVKIW--DLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~d-g~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~  150 (174)
                      +...+....|+|+|+.|+..+.+ +...+|  |+...................|+|+++.|+..+.+   ..|.+||+..
T Consensus       285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            34567788999999988776654 444555  66554432222223345678899999988765543   3588899987


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus       365 g~  366 (429)
T PRK03629        365 GG  366 (429)
T ss_pred             CC
Confidence            65

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=7.1e-07  Score=66.05  Aligned_cols=100  Identities=18%  Similarity=0.328  Sum_probs=79.0

Q ss_pred             EeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCCCceEEEec-CCc-EEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260           10 TASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPNKHYLAAAG-NPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      -|-.-|.|.|-|+...+.  ...+..|++.|.+++.+.+|.++++++ .|+ |||||..+++......-......+-+++
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence            366678889988765444  356778999999999999999998765 444 8999999885433322223456799999


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCC
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      |+|+..+++..|..|+++|+.++.
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999999999999865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=3.1e-07  Score=72.73  Aligned_cols=131  Identities=14%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ..|.++|.. |...+.+..+...+...+|+|++..++...    ...|.+||+.+++...+.   .........+|+|+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCC
Confidence            457777764 444445545556788899999987665432    235899999877533322   233456688999999


Q ss_pred             CEEE-EecCCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCcEEEEeCC
Q 042260           91 NWMY-SGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVWDLT  149 (174)
Q Consensus        91 ~~l~-t~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~  149 (174)
                      +.|+ +.+.++...||.+  ..........+........|+|+++.|+..+. ++...+|.+.
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence            9876 5677887777764  33332221122333456789999998876553 4566676654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=78.27  Aligned_cols=149  Identities=19%  Similarity=0.270  Sum_probs=108.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcC---CCceEEEecCCcEEEEEcCC-CCCCCeEEeecC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITP---NKHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~---~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~   77 (174)
                      +-+..|+|||.|..|.+||+..++....+. +|...|-...|-|   +..++..+.|++++.=.+.. +.......+..|
T Consensus       152 ~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h  231 (559)
T KOG1334|consen  152 QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH  231 (559)
T ss_pred             ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence            346789999999999999999888776665 3443444444555   34566667899998777643 333334445678


Q ss_pred             CCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee---cc--c--CcEEEEEEccC-CCEEEEeeCCCcEEEEeC
Q 042260           78 TNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY---ES--R--AAVNTVVLHPN-QTELISGDQNGNIRVWDL  148 (174)
Q Consensus        78 ~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~--~--~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~  148 (174)
                      .+.+..++..| ..+-|.|++.|+.+.=.|++.......+   ..  +  -...+++.+|- ...+++|+.|..+|+||.
T Consensus       232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~  311 (559)
T KOG1334|consen  232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ  311 (559)
T ss_pred             cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence            99999999887 4567999999999999999875433222   11  2  24679999995 457899999999999999


Q ss_pred             CCC
Q 042260          149 TAN  151 (174)
Q Consensus       149 ~~~  151 (174)
                      +.-
T Consensus       312 R~~  314 (559)
T KOG1334|consen  312 RRI  314 (559)
T ss_pred             cch
Confidence            863

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=7.3e-07  Score=70.25  Aligned_cols=129  Identities=14%  Similarity=0.338  Sum_probs=92.6

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCE
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNW   92 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   92 (174)
                      ++++.+.++..+...+ ...++|.++.|++++.-++...   -..+.|||++..   ++  ++-..+.-..+-|+|.|++
T Consensus       252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v--~df~egpRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PV--FDFPEGPRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---Ee--EeCCCCCccceEECCCCCE
Confidence            4777776633333322 2467899999999987665442   246889998653   23  3445567778889999999


Q ss_pred             EEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCC
Q 042260           93 MYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTAN  151 (174)
Q Consensus        93 l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~  151 (174)
                      ++.++-+   |.|.+||+...+++..+.... ..-+.|+|+|+++++++.      |..++||++.-.
T Consensus       326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            8887754   789999999877776665543 355689999999987653      577999998743

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.80  E-value=1.1e-07  Score=71.10  Aligned_cols=145  Identities=17%  Similarity=0.333  Sum_probs=98.1

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      ..+++.+.|..+..--.+.++.+...... ....++.+.-. .-+++-..+++.+..+......++..+.+|...+.++.
T Consensus       127 e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~  204 (404)
T KOG1409|consen  127 EWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK  204 (404)
T ss_pred             eeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence            34667777766554445555443322211 01111111111 11222234556666565566677888999999999999


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      |.+..+.+.+|..|..+.+||+...  .....+.+...|..+...+.-+.+++++.||.|.+||++..+
T Consensus       205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            9999999999999999999998543  333334567788888888888899999999999999999764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=2.2e-08  Score=52.00  Aligned_cols=37  Identities=35%  Similarity=0.825  Sum_probs=34.5

Q ss_pred             CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260           70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD  106 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd  106 (174)
                      ++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=5.8e-06  Score=64.29  Aligned_cols=152  Identities=14%  Similarity=0.194  Sum_probs=101.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeec----
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQ----   76 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~----   76 (174)
                      .+++.+.+++.|+.|.++|+.+++.+.+++... ...+++++++|.+++++  ..+.+.++|.++.+.  +.....    
T Consensus        46 ~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~  122 (369)
T PF02239_consen   46 PDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMP  122 (369)
T ss_dssp             T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-
T ss_pred             CCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc--eeeccccccc
Confidence            456677778899999999999999999998654 47889999999987765  578899999877643  322221    


Q ss_pred             ---CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCC
Q 042260           77 ---HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLT  149 (174)
Q Consensus        77 ---~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~  149 (174)
                         ....+.++..++... ++++--+.+.|-+-|.....  ....+.......+..|.|++++++.+. .+..|-++|.+
T Consensus       123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence               234677777777666 44555555788887876543  223445566778999999999877653 45689999999


Q ss_pred             CCcceeec
Q 042260          150 ANSCSCEL  157 (174)
Q Consensus       150 ~~~~~~~~  157 (174)
                      ++.....+
T Consensus       203 ~~k~v~~i  210 (369)
T PF02239_consen  203 TGKLVALI  210 (369)
T ss_dssp             TTEEEEEE
T ss_pred             cceEEEEe
Confidence            88766543

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.79  E-value=1.5e-06  Score=63.25  Aligned_cols=152  Identities=15%  Similarity=0.127  Sum_probs=103.6

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeec-CCCCEEEEE
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVG   85 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~   85 (174)
                      +.-++.|.++++.++..+.....+....-.+.++++++++.+.++.+ ...+-.|.+..........+.. ....-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            55688899999998775543322222222378899999999887655 4678888887654433332322 234456677


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEe------ecccCcEEEEEEccCCCE--EEEeeCCCcEEEEeCCCCcceeec
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQME------YESRAAVNTVVLHPNQTE--LISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      |+.....+|.+..||++.|||+|.......      -.+.+.+..+.|+|.+..  |+-.-.-+.+.+-|+++....+-+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            888888999999999999999987543222      235678999999987653  333323457999999987765544


Q ss_pred             Cc
Q 042260          158 GL  159 (174)
Q Consensus       158 ~~  159 (174)
                      ..
T Consensus       291 ~i  292 (344)
T KOG4532|consen  291 VI  292 (344)
T ss_pred             ec
Confidence            43

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.77  E-value=2e-06  Score=74.83  Aligned_cols=149  Identities=13%  Similarity=0.154  Sum_probs=101.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC---------------CCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP---------------DSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~   66 (174)
                      .+.++++.+.++.|++||..++... .+...               -....+++++|++. +++ -..++.|++||+.++
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            3566778888889999998776432 11110               01345788999876 333 346778999998765


Q ss_pred             CCCCeE-----------Eeec--------CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------
Q 042260           67 SPQPVM-----------SYDQ--------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------  119 (174)
Q Consensus        67 ~~~~~~-----------~~~~--------~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------  119 (174)
                      ......           .+..        .-....+++++++|+.+++...++.|++||..+..........        
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~  852 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK  852 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence            321111           0000        0112457888999999999999999999999876554322111        


Q ss_pred             ------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260          120 ------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       120 ------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                            .....++++++++.+++-+.++.|++||++++..
T Consensus       853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                  2467899999999888888899999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.70  E-value=3.7e-06  Score=61.23  Aligned_cols=141  Identities=11%  Similarity=0.092  Sum_probs=95.8

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEe-ecCCCCeEEEEEcC-----CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTI-QYPDSQVNRLEITP-----NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .+|+.||.-|...+|...+.+....+ ..+   .+++....     .-.++.++.|.++++.++.-.......-..  .-
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~s---nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~~  159 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVS---NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--NL  159 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeeccc---ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc--cc
Confidence            36889999999999998876543222 112   22222221     124566677889999998655433332111  13


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ...++++++++++.++.+....|..|.+...  ......  .....-.+..|+.+...+|++.+||++.|||++..
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            3788899999999999999999999998643  222212  22233456678888889999999999999999965

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=1.1e-07  Score=49.29  Aligned_cols=36  Identities=33%  Similarity=0.772  Sum_probs=31.4

Q ss_pred             eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260          112 CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus       112 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      ++.++ .+..+|.+++|+|+++.|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            34444 4678999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.69  E-value=8.7e-06  Score=63.29  Aligned_cols=142  Identities=18%  Similarity=0.301  Sum_probs=96.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      ++++-..+++|.+.|..+.+.+..+......-..+.++|++.++ +++.|+.+.++|+.+.+  .+..... .....+++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~   84 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIA   84 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEE
Confidence            44677789999999999999999998654433457789988754 44568899999998874  3444433 35578899


Q ss_pred             EeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecc--------cCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260           86 FQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYES--------RAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN  151 (174)
Q Consensus        86 ~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~  151 (174)
                      ++++|++++.+. .++.+.++|.++.+.+..+..        ..++..+..+|....++ +.-..+.|-+-|....
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            999999888665 689999999999877766532        24677888888887554 4444577877787764

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.6e-07  Score=70.25  Aligned_cols=118  Identities=19%  Similarity=0.317  Sum_probs=84.7

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcC-CC-ceEEEecCCcEEEEEcCCCCC-CCeEE
Q 042260            2 AQPSVILATASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITP-NK-HYLAAAGNPHIRLFDVNSSSP-QPVMS   73 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~i~i~d~~~~~~-~~~~~   73 (174)
                      ++...++..|.++|.|...|++.+     .+.+.+ .|++.|+++..-+ ++ .+++++-+++|++||++..+. ..+..
T Consensus       261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q  339 (425)
T KOG2695|consen  261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ  339 (425)
T ss_pred             cccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence            445668999999999999998754     344444 4777888775544 33 455666789999999986532 33677


Q ss_pred             eecCCCCEEEE--EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC
Q 042260           74 YDQHTNNVMAV--GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA  120 (174)
Q Consensus        74 ~~~~~~~v~~~--~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~  120 (174)
                      |++|-+.-.-+  ...+....+++++.|-..|||.++......+...+.
T Consensus       340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             eecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            88886543333  345567789999999999999999887776665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.67  E-value=3.7e-07  Score=72.48  Aligned_cols=97  Identities=14%  Similarity=0.306  Sum_probs=75.2

Q ss_pred             EEEEcCCCCCCCeEE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260           59 RLFDVNSSSPQPVMS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        59 ~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      .+|++..++.+++.. .-....++.+++++++...++.|+.||.|.+||...+..... ...-.++.++|||+|..+++|
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEE
Confidence            566665444433322 123567899999999999999999999999999987755443 444567899999999999999


Q ss_pred             eCCCcEEEEeCCCCcceee
Q 042260          138 DQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~~~~~  156 (174)
                      +..|.+.+||+--.....+
T Consensus       318 s~qGelQ~FD~ALspi~~q  336 (545)
T PF11768_consen  318 SEQGELQCFDMALSPIKMQ  336 (545)
T ss_pred             cCCceEEEEEeecCcccee
Confidence            9999999999987665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.67  E-value=5.1e-06  Score=65.36  Aligned_cols=135  Identities=16%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260           14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      ...|.++|...+ ....+..+...+....|+|++..++...    ...+++||+.++....   ...+...+...+|+++
T Consensus       169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPD  244 (417)
T ss_pred             cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC
Confidence            345778887543 3444444555688889999998766432    2468999998764322   2234455667889999


Q ss_pred             CCEEE-EecCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260           90 GNWMY-SGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS  152 (174)
Q Consensus        90 ~~~l~-t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~  152 (174)
                      |+.|+ +.+.++  .|.+||+.+.................|+|+++.|+..+. ++  .|.++|+..+.
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            98765 445444  588899887654332233333446689999998876543 33  57778877554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=6.1e-06  Score=65.36  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ec---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AG---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN   91 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   91 (174)
                      .|.++|...++ ...+..+...+....|+|++..++. +.   ...|.+||+.+++...+.   ..........|+|+|+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCC
Confidence            47777876544 4444445567888999999886654 32   235888899876543332   2233445688999999


Q ss_pred             EEE-EecCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260           92 WMY-SGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS  152 (174)
Q Consensus        92 ~l~-t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~  152 (174)
                      .++ +.+.++  .|.+||+.+.................|+|+++.++..+. ++  .|.++|+..+.
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            876 444555  588889987654432233334556789999998765543 33  57777876654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.56  E-value=1.8e-06  Score=64.62  Aligned_cols=82  Identities=18%  Similarity=0.377  Sum_probs=66.1

Q ss_pred             ceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260           26 RCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI  104 (174)
Q Consensus        26 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i  104 (174)
                      ..+..+..|...+.++.|.+.+.++. +..|..+-+||+-... .....+.+|..+|..+.+-+.-+.+.+++.||.|.+
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            45677778888999999999766554 5578889999996443 223446688999999998888899999999999999


Q ss_pred             EeCC
Q 042260          105 WDLR  108 (174)
Q Consensus       105 wd~~  108 (174)
                      ||++
T Consensus       267 w~mn  270 (404)
T KOG1409|consen  267 WNMN  270 (404)
T ss_pred             Eecc
Confidence            9975

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=1.1e-05  Score=63.83  Aligned_cols=145  Identities=16%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCC--cEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNP--HIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~--~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ++..|+..+.+   ..|.+||+.+++.... ...........|+|++..++ +. .++  .|.++|+.++....   +..
T Consensus       209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~  284 (430)
T PRK00178        209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTN  284 (430)
T ss_pred             CCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---ccc
Confidence            44455444433   3588899988765432 22223345688999987655 32 233  57888987764332   223


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~  150 (174)
                      +........|+++|+.++..+. ++  .|.++|+...................|+|+++.|+..+. ++  .|.+||+.+
T Consensus       285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            4444566789999998766553 33  577777766554322112222345689999998876554 33  488899887


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus       365 g~  366 (430)
T PRK00178        365 GS  366 (430)
T ss_pred             CC
Confidence            54

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.50  E-value=9.5e-07  Score=65.94  Aligned_cols=132  Identities=10%  Similarity=0.130  Sum_probs=98.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .+++.+|+.+.- .+.|-|.++-+..+-+.. -.+|.-+.|..+...+..  ..++.+.+|++...+..+.  .++....
T Consensus        18 p~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~ag   93 (447)
T KOG4497|consen   18 PCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQAG   93 (447)
T ss_pred             CCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--eccCCCc
Confidence            367788888755 788888888766555543 235777788877665543  3577899999987765443  3456788


Q ss_pred             EEEEEEeeCCCEEEEe-cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee
Q 042260           81 VMAVGFQCDGNWMYSG-SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      +.++.|+|+|+.|... .-+-+|.+|.+.+.++......+..+..++|+|++++.+..+
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence            9999999999876654 558899999999988776656677789999999999876553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=2.6e-05  Score=61.89  Aligned_cols=115  Identities=10%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCceEEE-e-cCCcEEEE--EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCC
Q 042260           38 VNRLEITPNKHYLAA-A-GNPHIRLF--DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAP  110 (174)
Q Consensus        38 v~~~~~~~~~~~~~~-~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~  110 (174)
                      .....|+|+|..++. + .++...+|  ++..... ....+..+...+....|+|+|+.|+..+.+   ..|.+||+.+.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            456789999886553 3 24444555  4432211 122223334556778899999988766543   46999999877


Q ss_pred             eeEEeecccCcEEEEEEccCCCEEEEee-C--CCcEEEEeCCCCcc
Q 042260          111 VCQMEYESRAAVNTVVLHPNQTELISGD-Q--NGNIRVWDLTANSC  153 (174)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~--d~~i~iwd~~~~~~  153 (174)
                      ...........+....|+|+++.|+..+ .  ...|.++|+..+..
T Consensus       362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            6543323334567789999999876433 2  34688889886643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=2.1e-05  Score=62.82  Aligned_cols=145  Identities=17%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             CcEEEEEee-CCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCC--cEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATAS-YDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNP--HIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s-~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~--~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ++..|+-.+ .++  .|.+||+.+++...... .........|+|++..++.  ..++  .|.++|+.+++...   +..
T Consensus       228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~  303 (448)
T PRK04792        228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITR  303 (448)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---Ccc
Confidence            344444433 333  48888988876532222 1223346789999886543  2344  47777887654322   223


Q ss_pred             CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~  150 (174)
                      +........|+++|+.++..+. ++  .+.++|+.+................+|+|+++.|+..+. ++  .|.++|+..
T Consensus       304 ~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        304 HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence            4445667789999998766553 34  466667765543322112222345689999998876544 34  355577776


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus       384 g~  385 (448)
T PRK04792        384 GA  385 (448)
T ss_pred             CC
Confidence            54

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.48  E-value=4.4e-07  Score=65.63  Aligned_cols=141  Identities=15%  Similarity=0.264  Sum_probs=87.1

Q ss_pred             EEEeeCCCcEEEEECCCCcee-EEeec-CCCCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            8 LATASYDKTIKFWEAKSGRCY-RTIQY-PDSQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++++..||.+-+++.+.--.+ +.+.. +.+ -.+...-..+.++.+.+      -+..+.|+++..+......  ....
T Consensus       104 V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~  180 (319)
T KOG4714|consen  104 VCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALD  180 (319)
T ss_pred             eEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccc
Confidence            778999999999987651100 00100 000 00111112233443332      3456778876543222111  1223


Q ss_pred             CEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeE-Ee-ecccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQ-ME-YESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+.+++-.|. ...++.|+.||.+-+||.|...-. .. .-++.++..+.|||. ...|+++++||.+--||-.+.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            4888887774 456788899999999999875321 11 246788999999995 567999999999999998853

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=2.5e-05  Score=62.38  Aligned_cols=133  Identities=19%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC--CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN--PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN   91 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   91 (174)
                      .+.++|....+ .+.+......+....|+|++..++..  .+  ..|.++|+.+++...+...   ........|+|+|+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCC
Confidence            56777765443 34444455678889999998866543  22  2588889877643332222   22334678999999


Q ss_pred             EEEE-ecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260           92 WMYS-GSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS  152 (174)
Q Consensus        92 ~l~t-~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~  152 (174)
                      .|+. .+.++.  |.++|+.+.................|+|+++.++..+. ++  .|.++|+..++
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            7764 455664  77778877654332233344567889999998765543 34  46667776554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.46  E-value=2.1e-06  Score=64.38  Aligned_cols=146  Identities=21%  Similarity=0.338  Sum_probs=96.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCC-ce--eEEeecC-----CCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCC-----
Q 042260            5 SVILATASYDKTIKFWEAKSG-RC--YRTIQYP-----DSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQ-----   69 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~-~~--~~~~~~~-----~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~-----   69 (174)
                      ...++++. |-.|.+|+++-- +.  +..++.+     ...|++..|+|.  +.++.+++.|.||+.|++...+.     
T Consensus       176 ~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  176 KETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             cceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            34455554 667999997632 22  3444433     134788899995  34556677899999999843210     


Q ss_pred             ---------CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-CeeEEeecc-------------cCcE---E
Q 042260           70 ---------PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEYES-------------RAAV---N  123 (174)
Q Consensus        70 ---------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~-------------~~~v---~  123 (174)
                               ....+......|..+.|+.+|+++.+-+.- +|++||++. .+++.++..             ...|   .
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence                     011122334678899999999999976554 899999953 222222211             1222   4


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          124 TVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .++|+.++..+++|+.+...++++...++
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecCCCCc
Confidence            67888888999999999999999976654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.43  E-value=6.7e-06  Score=61.79  Aligned_cols=146  Identities=16%  Similarity=0.321  Sum_probs=97.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc-----eeEEeecCC------------CCeEEEEEcCCC---ceEEEecCCcEEEEEc
Q 042260            4 PSVILATASYDKTIKFWEAKSGR-----CYRTIQYPD------------SQVNRLEITPNK---HYLAAAGNPHIRLFDV   63 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~~~~~~~d~~i~i~d~   63 (174)
                      .|..|+||..+|.|.+|.-....     ....++.|+            ..|+.+.|.+++   .++.+..|.++++|-+
T Consensus        36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi  115 (433)
T KOG1354|consen   36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI  115 (433)
T ss_pred             ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence            46689999999999999643221     111222222            256777787654   4667778899999987


Q ss_pred             CCCCCCC--------------------e-------------EE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           64 NSSSPQP--------------------V-------------MS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        64 ~~~~~~~--------------------~-------------~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      .....+.                    +             .. -++|...+.++.+++++..+.++ .|=.|.+|.+.-
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei  194 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEI  194 (433)
T ss_pred             eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccc
Confidence            5322111                    0             00 13577889999999998887765 577899999863


Q ss_pred             Cee---EEeec-c-----cCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCC
Q 042260          110 PVC---QMEYE-S-----RAAVNTVVLHPN-QTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       110 ~~~---~~~~~-~-----~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ...   +.-+. +     ...|++..|||. .+.++-.++.|+|+|.|++.
T Consensus       195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            221   11111 1     245899999995 56667778899999999994

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.39  E-value=4.9e-06  Score=69.31  Aligned_cols=144  Identities=14%  Similarity=0.241  Sum_probs=100.9

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCCe
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQPV   71 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~   71 (174)
                      -++++++..|...|+|.+-|.++.+.++++..|.+.+.+++.  .|.++++++          |.-+++||++.-+....
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            356788999999999999999999999999999998988766  444554433          66789999986533222


Q ss_pred             EEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEe---CCCCe-eEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260           72 MSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWD---LRAPV-CQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRV  145 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd---~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~i  145 (174)
                      ..  .+.++ .-+.|.|. ...++-++..|...+-|   +..+. -+..+.. .+.+....+++++..++.|..+|.|.+
T Consensus       262 I~--~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  262 IQ--FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             cc--cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            22  12121 22334442 33456667778888888   44442 2222333 345999999999999999999999999


Q ss_pred             EeCCC
Q 042260          146 WDLTA  150 (174)
Q Consensus       146 wd~~~  150 (174)
                      |--+.
T Consensus       339 wa~~~  343 (1118)
T KOG1275|consen  339 WADRP  343 (1118)
T ss_pred             ecCCC
Confidence            98443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.38  E-value=0.00017  Score=56.59  Aligned_cols=160  Identities=12%  Similarity=0.184  Sum_probs=108.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-ceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-HYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++.+++..|+ |...+.+...+-.++.  .+...|.-..+.-++ ..+.+..|+ .+-++|.++++.+   ......+.+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e~~lg~I  404 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIEKDLGNI  404 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---EeeCCccce
Confidence            4667777775 4567776665544432  233446544444332 344444455 7899999887533   344567899


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC----cEEEEeCCCCcce--
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG----NIRVWDLTANSCS--  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~--  154 (174)
                      .+++.+++|++++.+-....+-+.|+.+......- ....-|....|||+++.+|-+=-+|    .|+++|+..++..  
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            99999999999999999999999999887755432 3345699999999999998764444    5999999985432  


Q ss_pred             -----eecCcccce-eEEEEE
Q 042260          155 -----CELGLQYGL-RTFLFY  169 (174)
Q Consensus       155 -----~~~~~~~~~-~~~~~~  169 (174)
                           +++....++ .++++|
T Consensus       485 TT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         485 TTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             cCCcccccCcccCCCCcEEEE
Confidence                 445455555 455554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.5e-05  Score=61.87  Aligned_cols=154  Identities=12%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             CCcEEEEEeeC-CCcEEEEECCCCceeEEeecC--CCCeEEEEEcCCCc--eEEEe--cCCcEEEEEcCCCCCCCeEEee
Q 042260            3 QPSVILATASY-DKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH--YLAAA--GNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         3 ~~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++-++.|.+. |..+|++|+++-.-+..++..  +..+. ...++...  .++.+  .++.+.++|-.....+....-.
T Consensus        63 ~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk  141 (558)
T KOG0882|consen   63 YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK  141 (558)
T ss_pred             ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence            45677888777 999999999876554333322  22222 22233211  33333  4678999998766544444455


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEee------------cccCcEEEEEEccCCCEEEEeeC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEY------------ESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      -|..+|..+.+++-+..+++....|.|..|....    ++....+            ..+....++.|+|++..+.+-+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            6899999999999999999999999999999873    2211111            22456789999999999999889


Q ss_pred             CCcEEEEeCCCCcceeec
Q 042260          140 NGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~  157 (174)
                      |..||+++.+++...+.+
T Consensus       222 DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccEEEEEEeccchhhhhh
Confidence            999999999998766543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=8.9e-07  Score=70.26  Aligned_cols=128  Identities=17%  Similarity=0.361  Sum_probs=89.4

Q ss_pred             EEeecCCCCeEEE-EEcCCCceEEEecCCcEEEEEcCCCC-----CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260           29 RTIQYPDSQVNRL-EITPNKHYLAAAGNPHIRLFDVNSSS-----PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV  102 (174)
Q Consensus        29 ~~~~~~~~~v~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v  102 (174)
                      ..+.+|...|..+ +.+..+.++.++.|.++++|.++...     ..+..+|..|+..+.++.|-.+.+.++++  ||-+
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            4445565566554 44556778888999999999997543     23677889999999999999988888854  6889


Q ss_pred             EEEeCCCCeeEE--ee-cccCcEEEEEEcc--CCCEEEEe-eCCCcEEEEeCCCCcceeecC
Q 042260          103 KIWDLRAPVCQM--EY-ESRAAVNTVVLHP--NQTELISG-DQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       103 ~iwd~~~~~~~~--~~-~~~~~v~~~~~~~--~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++||.--.....  .. ..++.+..+...|  +...+++| +...+|+++|-+....++++.
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k  868 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK  868 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence            999965433221  11 1123334444444  34556666 678899999999998888764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.31  E-value=5.4e-05  Score=54.83  Aligned_cols=143  Identities=12%  Similarity=0.160  Sum_probs=89.8

Q ss_pred             CCCcEEEEECCCCceeEEeecCC--CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPD--SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      .+++|..||.++|+.+-......  ...........+.++++..++.+..||..+++..-...........   - ...+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~~~~   76 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-VVDG   76 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-EEET
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-eecc
Confidence            37899999999999988776522  1122113334566666668889999999887432222221111111   1 2234


Q ss_pred             CEEEEecCCCcEEEEeCCCCeeEEee-ccc----CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           91 NWMYSGSEDGTVKIWDLRAPVCQMEY-ESR----AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        91 ~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~----~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ..++.++.++.+..+|.++.+..... ...    ...........+..++.+..++.|..+|+++++...+.+.
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            55566667889999999988877663 221    1112222333477788888899999999999998877644

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.29  E-value=0.0003  Score=51.54  Aligned_cols=143  Identities=19%  Similarity=0.214  Sum_probs=97.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEc-CCCceEEEecCCcEEEEEcCCCCCCCeEEee--c-CCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD--Q-HTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~-~~~   79 (174)
                      .+.++.+--..+.|.-|+..+++.. .+..+.  ..++.+. +++.++++.. +.+.++|..+++...+....  . ...
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~   86 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFN   86 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccC
Confidence            5778888888899999998876543 233332  6677777 6766666654 55677798887655554442  1 345


Q ss_pred             CEEEEEEeeCCCEEEEecCC--------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSED--------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      ....+++.++|++.++....        |.+..++.. .........-...+.++|+|+++.|. +-+..+.|..+++..
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence            67789999999988876544        557777777 44444444455679999999998775 556678899999874


Q ss_pred             C
Q 042260          151 N  151 (174)
Q Consensus       151 ~  151 (174)
                      .
T Consensus       166 ~  166 (246)
T PF08450_consen  166 D  166 (246)
T ss_dssp             T
T ss_pred             c
Confidence            3

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=6.7e-05  Score=61.92  Aligned_cols=139  Identities=12%  Similarity=0.204  Sum_probs=94.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-----CceEEEecCCcEEEEEcCC-CCCCCeEEeecC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-----KHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~   77 (174)
                      .|..++|||.||+|.|-.+.+.+....+..+ .++.+++++|+     .+.+++++...+-++.-+= +....+ .+...
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v-~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV-VLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce-eeecC
Confidence            4678999999999999999988887777654 46889999986     3345555444465554321 111222 23445


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-------CcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------AAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.|.++.|.  |++||=++.+| |+++|+...+.......+       .-...+.|.++.+.|+  |...+|+|..++
T Consensus       160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~  233 (846)
T KOG2066|consen  160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK  233 (846)
T ss_pred             ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence            6889999984  78888887775 999999876655443221       1134677777665554  455689999998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.24  E-value=4.3e-06  Score=62.18  Aligned_cols=122  Identities=17%  Similarity=0.314  Sum_probs=79.5

Q ss_pred             CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-CeEEeecC-----CCCEEEEEEeeCCC-EEEEecCCCcEEEEeCC
Q 042260           36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-PVMSYDQH-----TNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLR  108 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~  108 (174)
                      .-++++.++.+...+.++.+-.|.+|.+....-. .+.....|     ..-+++..|+|... .+.-.++.|.|++-|+|
T Consensus       173 yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         173 YHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            3467888888888888888888999988543211 11112223     24467777887543 34445677899999998


Q ss_pred             CCee----EEeec-------------ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecC
Q 042260          109 APVC----QMEYE-------------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELG  158 (174)
Q Consensus       109 ~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (174)
                      +...    ...+.             .-+.|.++.|+|+++++++-..- +|+|||++. +.+...++
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~  319 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeec
Confidence            5321    01110             12568999999999999877654 799999994 44554443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.23  E-value=0.0011  Score=51.07  Aligned_cols=160  Identities=16%  Similarity=0.272  Sum_probs=100.1

Q ss_pred             EEEeeCC----CcEEEEEC--CCCcee--EEeecCCCCeEEEEEcCCCceEEEe-c----CCcEEEEEcCCC--CCCCeE
Q 042260            8 LATASYD----KTIKFWEA--KSGRCY--RTIQYPDSQVNRLEITPNKHYLAAA-G----NPHIRLFDVNSS--SPQPVM   72 (174)
Q Consensus         8 l~s~s~D----~~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~-~----d~~i~i~d~~~~--~~~~~~   72 (174)
                      +..|++.    +.|..|++  ++++..  ..+. .......++++|++.++.+. .    ++.|..|.+...  ++..+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4556666    68999987  445432  2222 23345668889988877664 2    457888887653  333333


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCC-eeEE---eec-----------ccCcEEEEEEccCCCEEEE
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAP-VCQM---EYE-----------SRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~-~~~~---~~~-----------~~~~v~~~~~~~~~~~l~s  136 (174)
                      .........+.+++++++++++.+. .+|.+.++++... ....   .+.           ....+.++.++|++++|++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            3332345677889999999887775 5899999999762 2211   111           1245789999999998877


Q ss_pred             eeC-CCcEEEEeCCCCc--ce----eecCcccceeEEEE
Q 042260          137 GDQ-NGNIRVWDLTANS--CS----CELGLQYGLRTFLF  168 (174)
Q Consensus       137 ~~~-d~~i~iwd~~~~~--~~----~~~~~~~~~~~~~~  168 (174)
                      ... ...|.+|++....  ..    .+.+...+++.++|
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            532 3369999998765  21    24556666666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.20  E-value=0.0011  Score=51.27  Aligned_cols=143  Identities=14%  Similarity=0.290  Sum_probs=88.8

Q ss_pred             EEEEeeCCCcEEEEECCCCc--e--eEEeec-CCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC--CCCCCeEEeec-
Q 042260            7 ILATASYDKTIKFWEAKSGR--C--YRTIQY-PDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS--SSPQPVMSYDQ-   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~--~--~~~~~~-~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~--~~~~~~~~~~~-   76 (174)
                      ++++--....|.+|++....  .  ...+.. ....-..+.|+|+++++...  .++.|.++++..  +.......... 
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            44444445579999887654  3  223332 34557899999998876544  467799998873  22111111111 


Q ss_pred             -----CCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCC--C--eeEEeecc-cCcEEEEEEccCCCEEEEeeC-CCcEE
Q 042260           77 -----HTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRA--P--VCQMEYES-RAAVNTVVLHPNQTELISGDQ-NGNIR  144 (174)
Q Consensus        77 -----~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i~  144 (174)
                           .......++++++|++++.+. .+..|.++++..  .  ..+..+.. ......++++|+++.|+++.+ ++.|.
T Consensus       238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence                 112688899999999876654 567899999942  2  22223332 445799999999999988775 56899


Q ss_pred             EEeCC
Q 042260          145 VWDLT  149 (174)
Q Consensus       145 iwd~~  149 (174)
                      +|++.
T Consensus       318 vf~~d  322 (345)
T PF10282_consen  318 VFDID  322 (345)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.20  E-value=9.8e-06  Score=58.79  Aligned_cols=92  Identities=18%  Similarity=0.293  Sum_probs=65.3

Q ss_pred             EEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEE
Q 042260           17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWM   93 (174)
Q Consensus        17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l   93 (174)
                      .+.|+++.-+.+..-......|..++-+|. ..+++ +++++.+-+||.+... .+...+..|...+..+.|.| ++..+
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchhe
Confidence            455555543333222223344888888884 34444 4567789999998763 34445678999999999997 78899


Q ss_pred             EEecCCCcEEEEeCCC
Q 042260           94 YSGSEDGTVKIWDLRA  109 (174)
Q Consensus        94 ~t~~~dg~v~iwd~~~  109 (174)
                      +++++||.+-.||-.+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.18  E-value=0.00061  Score=51.57  Aligned_cols=138  Identities=18%  Similarity=0.317  Sum_probs=93.8

Q ss_pred             CCcEEEEECCC--Cce--eEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC-CCCCCeEEeecCCCC------
Q 042260           14 DKTIKFWEAKS--GRC--YRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS-SSPQPVMSYDQHTNN------   80 (174)
Q Consensus        14 D~~v~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~------   80 (174)
                      +|.|--|.+..  |+.  +-.......+-+.+++++++.++.++  ..+.+.++.++. +.+........|.+.      
T Consensus        63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ  142 (346)
T COG2706          63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ  142 (346)
T ss_pred             cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence            46677776553  433  22222233344778899999877665  467899999865 434433333344444      


Q ss_pred             ----EEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeE----EeecccCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCC
Q 042260           81 ----VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQ----MEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTA  150 (174)
Q Consensus        81 ----v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~  150 (174)
                          +....+.|+++++++.+- ...|.+|++......    ..+..+....-|+|||++++.....+ +++|.+|+++.
T Consensus       143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence                888889999999888753 247999998754432    22344567899999999999877665 89999999998


Q ss_pred             C
Q 042260          151 N  151 (174)
Q Consensus       151 ~  151 (174)
                      .
T Consensus       223 ~  223 (346)
T COG2706         223 A  223 (346)
T ss_pred             C
Confidence            4

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.0005  Score=54.67  Aligned_cols=143  Identities=13%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             EeeCCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cE--EEEEcCCCCC-CCeEEeecCCCC
Q 042260           10 TASYDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HI--RLFDVNSSSP-QPVMSYDQHTNN   80 (174)
Q Consensus        10 s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i--~i~d~~~~~~-~~~~~~~~~~~~   80 (174)
                      ++..++  .|.+.++.+|+...... .........|+|+|..++...  ++  .+  ..|++..+.. ............
T Consensus       204 ~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~  282 (428)
T PRK01029        204 VSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT  282 (428)
T ss_pred             EEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence            444444  46666887776433332 223344578999997665432  12  33  4466654311 111111222233


Q ss_pred             EEEEEEeeCCCEEEEec-CCCcEEEEe--CCC-CeeEEee-cccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCCc
Q 042260           81 VMAVGFQCDGNWMYSGS-EDGTVKIWD--LRA-PVCQMEY-ESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTANS  152 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~-~dg~v~iwd--~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~  152 (174)
                      .....|+|+|+.|+..+ .+|...+|.  +.. ......+ .....+....|+|+++.|+..+.+   ..|.+||+..+.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            45678999999877655 466666664  321 1111212 223456788999999988765432   369999998775


Q ss_pred             c
Q 042260          153 C  153 (174)
Q Consensus       153 ~  153 (174)
                      .
T Consensus       363 ~  363 (428)
T PRK01029        363 D  363 (428)
T ss_pred             e
Confidence            4

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.18  E-value=0.0003  Score=54.77  Aligned_cols=144  Identities=12%  Similarity=0.145  Sum_probs=90.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+..++.++.|..+|..+|+.+-............... ++.+++++.++.+..+|..+++..  -.... ...+.+.-.
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~--W~~~~-~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKEL--WRAKL-SSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEe--eeecc-CceeecCCE
Confidence            46778889999999999999876665443212222222 455666667888999998777432  11111 111211111


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE------EEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN------TVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      . .+..++.++.++.+..||.++.+.+..+....+..      +...  .+..++.+..++.+.-+|.++++..++.
T Consensus       143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            1 24566677889999999999888766554432211      1111  1246777888899999999998877654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.16  E-value=4.9e-05  Score=63.63  Aligned_cols=141  Identities=21%  Similarity=0.272  Sum_probs=103.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +..++-|+....+..+|+++++..+......+.|.-+..  ++.++.++ ..|.|.+-|.++.  ..+.++.+|.+.+.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC--ceeeeeeccccceee
Confidence            345677888888999999999888777766656766665  44555544 5788999898765  567788999998887


Q ss_pred             EEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeecccCcEEEEEEccC-CCEEEEeeCCCcEEEEe---CCC
Q 042260           84 VGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPN-QTELISGDQNGNIRVWD---LTA  150 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd---~~~  150 (174)
                      ...  +|+.++|++.         |..|++||+|.-+....+..+....-+.|+|. ...++..++.|+..+-|   +.+
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            665  6889999874         67799999997665544444444466678885 45677788888888888   555


Q ss_pred             C
Q 042260          151 N  151 (174)
Q Consensus       151 ~  151 (174)
                      +
T Consensus       301 P  301 (1118)
T KOG1275|consen  301 P  301 (1118)
T ss_pred             C
Confidence            4

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.16  E-value=1.3e-05  Score=61.02  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260           11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      ++....+.+|....+.+. .+-+|.+-+..++++|++.++.++ -|..||+--....-..... .-+|+.-|..++..+ 
T Consensus       128 agD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~-  204 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTD-  204 (390)
T ss_pred             cCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeecc-
Confidence            344444445544433222 223566678899999999888777 4777887655433211111 236889999998765 


Q ss_pred             CCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           90 GNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      +..|.++|.|+++++||++++++..++
T Consensus       205 ~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  205 NYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CceeeecCCCCcEEEEecccCCccccc
Confidence            455899999999999999987765444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.1e-05  Score=60.24  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=65.5

Q ss_pred             EEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC-CCEE
Q 042260           17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD-GNWM   93 (174)
Q Consensus        17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l   93 (174)
                      +++.+.-+-+...-+..+...|.+++|+|.+.  +..++-+..|+|.|+++..  ....+..+ ..+++++|..+ ..+|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCccee
Confidence            33443333333333334556789999999654  4556678899999998863  34445566 78999999865 5579


Q ss_pred             EEecCCCcEEEEeCCCCe
Q 042260           94 YSGSEDGTVKIWDLRAPV  111 (174)
Q Consensus        94 ~t~~~dg~v~iwd~~~~~  111 (174)
                      ++|...|.|.++|+|.+.
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            999999999999999765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.13  E-value=0.0015  Score=48.11  Aligned_cols=153  Identities=13%  Similarity=0.202  Sum_probs=95.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC-------CCCeEEEEEcCC-------CceEEEecCCcEEEEEcCCC---
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-------DSQVNRLEITPN-------KHYLAAAGNPHIRLFDVNSS---   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~-------~~~~~~~~d~~i~i~d~~~~---   66 (174)
                      ++.+||-+...|+|++||+... .+..+...       ..+|.++.|-+.       ..+++....+.++-|-+..+   
T Consensus        54 D~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q  132 (282)
T PF15492_consen   54 DCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ  132 (282)
T ss_pred             CCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC
Confidence            5678999999999999998753 33333321       234666666532       24666666777777765332   


Q ss_pred             CCCCeEEe---ecCCCCEEEEEEeeCCCEEEEec-CCC----------cEEEEeCCCCe--e------------------
Q 042260           67 SPQPVMSY---DQHTNNVMAVGFQCDGNWMYSGS-EDG----------TVKIWDLRAPV--C------------------  112 (174)
Q Consensus        67 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~-~dg----------~v~iwd~~~~~--~------------------  112 (174)
                      +......+   ......|.++.|.+..++|+-|+ ...          -+.-|.+-...  .                  
T Consensus       133 ~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~  212 (282)
T PF15492_consen  133 GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRG  212 (282)
T ss_pred             cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccc
Confidence            22222221   22467899999999877655543 322          24445531100  0                  


Q ss_pred             ---EE---ee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          113 ---QM---EY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       113 ---~~---~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                         ..   .+    .....|..+..+|+++.|++...+|.|.+|++-+-+...++
T Consensus       213 ~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  213 LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence               00   01    12356889999999999999999999999999876555443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.11  E-value=0.00027  Score=54.99  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCC----CC------eE-EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPD----SQ------VN-RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~----~~------v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++.+..++.+..+|.++|+.+.......    ..      +. ...+ .++.+++++.++.+..+|..+++.  .-..+
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~--~W~~~  268 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRV--LWKRD  268 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcE--EEeec
Confidence            45677888999999999998764432110    00      00 0111 134555666788899999987642  22111


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                        ........  ..+..++.++.||.+..+|..+.+...... ... ...+...  .+..|++++.+|.|.++|.++++.
T Consensus       269 --~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       269 --ASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             --cCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence              11111111  246678888899999999998877654442 111 1222222  456888899999999999999998


Q ss_pred             eeecCccc
Q 042260          154 SCELGLQY  161 (174)
Q Consensus       154 ~~~~~~~~  161 (174)
                      ..++....
T Consensus       343 ~~~~~~~~  350 (377)
T TIGR03300       343 VARLKTDG  350 (377)
T ss_pred             EEEEEcCC
Confidence            87765433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.10  E-value=0.00081  Score=59.10  Aligned_cols=147  Identities=12%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC-----------------CCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP-----------------DSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSS   67 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~   67 (174)
                      +.++-.....|+.+|..++. +..+...                 -..-.+++++| ++.++++ .+++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            44444455678888876653 3222110                 01235788998 4444444 467789999986542


Q ss_pred             CCCeE------Eeec------CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEee-------------cc---
Q 042260           68 PQPVM------SYDQ------HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEY-------------ES---  118 (174)
Q Consensus        68 ~~~~~------~~~~------~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~-------------~~---  118 (174)
                      .....      ...+      .-.....++++++++ .+++.+.++.|++||+.+.......             ..   
T Consensus       717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            21100      0000      113456789999987 5667777899999998764322110             00   


Q ss_pred             ------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          119 ------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       119 ------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                            -.....++++++++.+++-+.++.|++||..++.+.
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence                  012468899999998888888999999999876544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=6.1e-06  Score=68.88  Aligned_cols=142  Identities=20%  Similarity=0.309  Sum_probs=89.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--c-----------------------------
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--G-----------------------------   54 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~-----------------------------   54 (174)
                      ..|+.|+..|.|++|++.+|.....+.+|.++++.+.=+.+|.+..++  .                             
T Consensus      1114 ~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFs 1193 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFS 1193 (1516)
T ss_pred             ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehh
Confidence            358899999999999999999999999998888766544444332221  1                             


Q ss_pred             -----------CCcEEEEEcCCCCCCCe-EE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc
Q 042260           55 -----------NPHIRLFDVNSSSPQPV-MS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA  121 (174)
Q Consensus        55 -----------d~~i~i~d~~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~  121 (174)
                                 .+.+.+||+.+...... .+ -......-....|+|+.+++.   +||  .+||+|.+..++.|..-.-
T Consensus      1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD 1268 (1516)
T ss_pred             hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee
Confidence                       12234555544321100 00 001122234556777776655   455  4699998877766653222


Q ss_pred             EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      -..=.|||+++.++.-+     .|||+++.+.+..-
T Consensus      1269 ~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1269 YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             cccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence            23447999999988765     58999998766554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.00052  Score=49.66  Aligned_cols=148  Identities=14%  Similarity=0.202  Sum_probs=90.3

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC--C-CCEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH--T-NNVMA   83 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-~~v~~   83 (174)
                      .+++++.++.+..||..+|+.+..+.... .+.......++.+++...++.+..+|..+++..-.. ....  . .....
T Consensus        38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~  115 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI-YLTSSPPAGVRSS  115 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE-EE-SSCTCSTB--
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcceeeee-ccccccccccccc
Confidence            45666899999999999999887777532 221112233556666667778999998887532221 1111  0 11222


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-c----------EEEEEEccCCCEEEEeeCCCc-EEEEeCCCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-A----------VNTVVLHPNQTELISGDQNGN-IRVWDLTAN  151 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~  151 (174)
                      ......+..++.+..++.+..+|+++++......... +          +..-....++ .++.++.++. +.+ |+.++
T Consensus       116 ~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  116 SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG  193 (238)
T ss_dssp             SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT
T ss_pred             cCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC
Confidence            2233347888888889999999999988766553321 1          1222222344 6666666665 555 99998


Q ss_pred             cceeecC
Q 042260          152 SCSCELG  158 (174)
Q Consensus       152 ~~~~~~~  158 (174)
                      +..++..
T Consensus       194 ~~~w~~~  200 (238)
T PF13360_consen  194 EKLWSKP  200 (238)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEec
Confidence            8665433

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=8.9e-07  Score=71.09  Aligned_cols=142  Identities=20%  Similarity=0.293  Sum_probs=97.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCC-CceEEEec-----CCcEEEEEcCCCCCCCeE--Ee
Q 042260            5 SVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPN-KHYLAAAG-----NPHIRLFDVNSSSPQPVM--SY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~~-----d~~i~i~d~~~~~~~~~~--~~   74 (174)
                      .++++.|..+|.|-+-..+....  ...+..+..++++++|++- ...++++-     +-.++|||+.+.-..|..  .+
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            46788999999999988765443  2333445667899999984 33455553     446899999765222211  11


Q ss_pred             ec-CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEe
Q 042260           75 DQ-HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGDQNGNIRVWD  147 (174)
Q Consensus        75 ~~-~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd  147 (174)
                      .. -.....+++|..+.+.+.+|...+.++++|+|........-....++.+.+.| ..+++++-. ||.|.+||
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence            11 22345578888899999999999999999999654433322334567788888 667676654 99999999

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=1.8e-05  Score=64.75  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=108.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce---------------eEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRC---------------YRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP   68 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~   68 (174)
                      +.+++.||.||-+|+-.+.+...               -+++.+|...|..+.|+.+...+.++ .+|-|-+|-+-.+++
T Consensus        26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence            45899999999999998764211               13345677889999999877777776 467789999877766


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      ......+...+-|.+++|+.+|..|+..-.||.|.+=.+...+.-..--.......+.|+++.+.++.+-.+|.+.+||.
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydn  185 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDN  185 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecc
Confidence            55555556677899999999999999999999998766654332111111223446778998888888888999999998


Q ss_pred             CC
Q 042260          149 TA  150 (174)
Q Consensus       149 ~~  150 (174)
                      +.
T Consensus       186 qg  187 (1189)
T KOG2041|consen  186 QG  187 (1189)
T ss_pred             cc
Confidence            74

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.05  E-value=0.001  Score=52.44  Aligned_cols=127  Identities=10%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             EEEEeeCCC-cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            7 ILATASYDK-TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      -++.|-+|| .+-++|.++++.. .+...-+.|.++..+++|+.++.+.+. .+-+.|+.++..+.+-  .-.-+-++..
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf  449 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDF  449 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEE
Confidence            467788888 8999998877644 344455679999999999988777554 4666688777544332  2334679999


Q ss_pred             EEeeCCCEEEEecCCC----cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE
Q 042260           85 GFQCDGNWMYSGSEDG----TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  136 (174)
                      .|++++++||=+-.+|    .|+++|+...+....-.....=.+-+|.|+++.|.-
T Consensus       450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence            9999999999887766    689999988764322111122234578899987653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.03  E-value=4.6e-05  Score=62.62  Aligned_cols=129  Identities=22%  Similarity=0.319  Sum_probs=91.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEEcC-CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEITP-NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      |...++++++.|-.+..||++... .+.++.........+.|+- ++..++++-...+++||++-+. .++...++|...
T Consensus       125 q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K~~vs~  203 (1081)
T KOG0309|consen  125 QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLKGHVSS  203 (1081)
T ss_pred             CCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-cceEEeccccee
Confidence            456789999999999999998754 4555555556677788885 4455666666779999998765 455667778888


Q ss_pred             EEEEEEee-CCCEEEEecCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCC
Q 042260           81 VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQT  132 (174)
Q Consensus        81 v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~  132 (174)
                      +..++|+. ....+.+++.||+|+.||-....  ...+.....+|..-.+.|-+.
T Consensus       204 vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  204 VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             eehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            88888875 45568899999999999976432  223333445555555555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.1e-05  Score=59.27  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             EeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC
Q 042260           73 SYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  150 (174)
                      .+..+...|.+++|+|..+ ++..++.+..|+|.|+++..++..+....++.+++|.-++. .+.+|-.+|.|.+||++.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            3456778899999999766 78889999999999999999988888889999999987654 566888999999999997


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      ++
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            54

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0022  Score=50.87  Aligned_cols=132  Identities=11%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-e---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260           14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      +..|.++|+.+|+...-.. .........|+|++..++- .   ++..|.++|+.++....+.   .+........|+|+
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPD  287 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVED  287 (419)
T ss_pred             CCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCC
Confidence            3568888998876544333 3344556789999865443 2   2346778888766433322   22222344579999


Q ss_pred             CCEEEEecC-CC--cEEEEeCCCCeeEE-eecccCcEEEEEEccCCCEEEEeeCC---------CcEEEEeCCCCc
Q 042260           90 GNWMYSGSE-DG--TVKIWDLRAPVCQM-EYESRAAVNTVVLHPNQTELISGDQN---------GNIRVWDLTANS  152 (174)
Q Consensus        90 ~~~l~t~~~-dg--~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~  152 (174)
                      |+.|+-.+. .+  .|.+.|+.+..... ++....   ...|+|+++.++..+..         ..|.+.|+..+.
T Consensus       288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            997776654 23  57777887665432 222111   24899999988755432         257888887654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.86  E-value=0.0051  Score=45.01  Aligned_cols=164  Identities=14%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCCCceEEEecCC-----c--EEEEEcCCCCCCCe
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPNKHYLAAAGNP-----H--IRLFDVNSSSPQPV   71 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~d~-----~--i~i~d~~~~~~~~~   71 (174)
                      ++.++ .+..++ +.++|..+++...-...     .....+++++.++|.+.++....     .  -++|-+.... . .
T Consensus        51 ~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~-~  126 (246)
T PF08450_consen   51 DGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-K-V  126 (246)
T ss_dssp             TSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-E-E
T ss_pred             CCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-e-E
Confidence            35444 444444 56669888865433332     23457899999999877664211     1  2444443331 1 1


Q ss_pred             EEeecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCCCCee-------EEeeccc-CcEEEEEEccCCCEEEEeeCCCc
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVC-------QMEYESR-AAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~-------~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      ............++|+++++.+ ++-+..+.|..+++.....       ...+... ...-.+++..+++..++.-..+.
T Consensus       127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            1122234567899999999865 5778888999999853211       1112222 24788999999998777777889


Q ss_pred             EEEEeCCCCcceeecCcc-cceeEEEEEeec
Q 042260          143 IRVWDLTANSCSCELGLQ-YGLRTFLFYHQD  172 (174)
Q Consensus       143 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~  172 (174)
                      |..+|.+ ++....++++ ..+....|.-++
T Consensus       207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~  236 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPD  236 (246)
T ss_dssp             EEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred             EEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence            9999998 7777777666 556666665444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.0023  Score=54.14  Aligned_cols=141  Identities=12%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             CcEEEE-EeeCCCcEEEEECCCCceeEEeecCCCC-eEEEEEcCC--------CceEEEecCCcEEEEEcCCCCCCCeE-
Q 042260            4 PSVILA-TASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN--------KHYLAAAGNPHIRLFDVNSSSPQPVM-   72 (174)
Q Consensus         4 ~~~~l~-s~s~D~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~--------~~~~~~~~d~~i~i~d~~~~~~~~~~-   72 (174)
                      +..+|+ .......|+--|+++|+.+..+..+... |..+  .|+        ...+++-.+..+..||.|..+.+.+. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            344444 4456677888999999999999877533 4443  332        23455556777888999865422221 


Q ss_pred             ---EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           73 ---SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        73 ---~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                         .| .......+++-..+| +||.|+.+|.||+||--.......+ ..+.+|..+..+.+|+.|++.+ +..+.|++.
T Consensus       570 ~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence               11 124556676655554 6899999999999994322222223 3478999999999999877654 557888886


Q ss_pred             C
Q 042260          149 T  149 (174)
Q Consensus       149 ~  149 (174)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.81  E-value=8.6e-05  Score=61.07  Aligned_cols=142  Identities=15%  Similarity=0.349  Sum_probs=94.9

Q ss_pred             EEEeeCCCcEEEEECCCC--ce-eEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            8 LATASYDKTIKFWEAKSG--RC-YRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +++.+.-+ ..+|++...  +. .....+|...++++-|+|+..-+ ++ +.|-.+..||.++.. .++....-......
T Consensus        85 iVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~as  162 (1081)
T KOG0309|consen   85 IVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAAS  162 (1081)
T ss_pred             EEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCc
Confidence            44444443 467875432  22 23344677789999999976543 33 457789999998864 33444444556778


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .++|+-..-.+.+.+....|++||.+.+.. .... .+-..|+.+.|+- ....+.+.+.|++|++||....
T Consensus       163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            888885444455567778899999986432 2222 2456788888865 3456788899999999999864

>smart00320 WD40 WD40 repeats

Probab=97.80  E-value=8.3e-05  Score=36.68  Aligned_cols=36  Identities=42%  Similarity=0.810  Sum_probs=31.3

Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD  106 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd  106 (174)
                      ...+..|...+.++.|.+.+..+++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344567888899999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.80  E-value=0.0092  Score=46.18  Aligned_cols=114  Identities=9%  Similarity=0.067  Sum_probs=76.9

Q ss_pred             cEEEEEeeC----CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--e---------cCCcEEEEEcCCCCCC
Q 042260            5 SVILATASY----DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--A---------GNPHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~----D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~---------~d~~i~i~d~~~~~~~   69 (174)
                      ..++++-..    .++|.+.|..+++.+..+..... -..+ ++|+++.+..  +         .++.|.+||..+.+..
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            344555444    38999999999998888875433 2334 8998876544  3         3578999999887443


Q ss_pred             CeEEeecC-----CCCEEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeecccC
Q 042260           70 PVMSYDQH-----TNNVMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYESRA  120 (174)
Q Consensus        70 ~~~~~~~~-----~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~  120 (174)
                      .......-     .......+++++|++++...  .+..|-+.|+.+.+.+.++.-+.
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence            22222110     12233678899999888654  37899999999988877665543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.0046  Score=46.94  Aligned_cols=148  Identities=16%  Similarity=0.333  Sum_probs=96.5

Q ss_pred             CcEEEEEeeC-CCcEEEEECCC-CceeEEe--ecCCCC----------eEEEEEcCCCceEEEe--cCCcEEEEEcCCCC
Q 042260            4 PSVILATASY-DKTIKFWEAKS-GRCYRTI--QYPDSQ----------VNRLEITPNKHYLAAA--GNPHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~-D~~v~vwd~~~-~~~~~~~--~~~~~~----------v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~   67 (174)
                      ++++++++.+ -|.|.++.++. |.....+  ..|..+          +....+.|++.++++.  +.+.+.+|++..+.
T Consensus        99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706          99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence            3445555554 56799998865 4332221  122222          7778899999887765  45679999998775


Q ss_pred             CCCeEEee-cCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCC--ee--EE-------eecccCcEEEEEEccCCCEE
Q 042260           68 PQPVMSYD-QHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP--VC--QM-------EYESRAAVNTVVLHPNQTEL  134 (174)
Q Consensus        68 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~--~~--~~-------~~~~~~~v~~~~~~~~~~~l  134 (174)
                      +.+..... .....-..+.|+|++++.+...+ +++|.+|.....  +.  +.       .|......-+|.++|+|++|
T Consensus       179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL  258 (346)
T COG2706         179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL  258 (346)
T ss_pred             cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence            54433221 23456778999999998877665 889999998763  11  11       12334567899999999998


Q ss_pred             EEeeC-CCcEEEEeCCCC
Q 042260          135 ISGDQ-NGNIRVWDLTAN  151 (174)
Q Consensus       135 ~s~~~-d~~i~iwd~~~~  151 (174)
                      .+.-. ...|-++-+...
T Consensus       259 YasNRg~dsI~~f~V~~~  276 (346)
T COG2706         259 YASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEecCCCCeEEEEEEcCC
Confidence            76532 235777766643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.77  E-value=0.0084  Score=45.23  Aligned_cols=146  Identities=14%  Similarity=0.216  Sum_probs=92.4

Q ss_pred             CCCcEEEEECC-CCceeEEeecCCCCeEEEEEcCCCceEEEe--c-----------------CCcEEEEEcCCCCCCCeE
Q 042260           13 YDKTIKFWEAK-SGRCYRTIQYPDSQVNRLEITPNKHYLAAA--G-----------------NPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus        13 ~D~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~-----------------d~~i~i~d~~~~~~~~~~   72 (174)
                      ..|.|-|||.. +-+.+.++..+.-.-..+.+.|++..++.+  +                 +..+-..|..+++.....
T Consensus        75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence            35679999988 445566666554445667889998554443  2                 122233344555433333


Q ss_pred             Ee--ecCCCCEEEEEEeeCCCEEEEecCCCc-------EEEEeCCCCeeEEee------cccCcEEEEEEccCCCEEEEe
Q 042260           73 SY--DQHTNNVMAVGFQCDGNWMYSGSEDGT-------VKIWDLRAPVCQMEY------ESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        73 ~~--~~~~~~v~~~~~~~~~~~l~t~~~dg~-------v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      .+  ..|+..+..+++..+|..++.....|.       +-+++..........      ....-+-++++++++..+++.
T Consensus       155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  155 ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence            34  347778999999999887777655442       444444332111111      123568999999999888655


Q ss_pred             e-CCCcEEEEeCCCCcceeecC
Q 042260          138 D-QNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       138 ~-~d~~i~iwd~~~~~~~~~~~  158 (174)
                      + ..+.+.+||..+++..-...
T Consensus       235 sPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCCCCEEEEEECCCCCEeeccc
Confidence            5 57789999999998876544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.76  E-value=0.0019  Score=53.81  Aligned_cols=145  Identities=15%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-----------ceEEEec--CCcEEEEEcCCCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-----------HYLAAAG--NPHIRLFDVNSSSPQ   69 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~--d~~i~i~d~~~~~~~   69 (174)
                      +++.+||=|+.. .|.+-|..+-+.++++..|...|+.+.|.|..           .++.+++  .|.|-+||.......
T Consensus        24 ~~~GLiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~  102 (1062)
T KOG1912|consen   24 SPSGLIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI  102 (1062)
T ss_pred             CccceEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh
Confidence            355677777755 68999999999999999999999999998632           2333443  477999999776433


Q ss_pred             CeEEeecCCCCEEEEEEee---CC-CEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EEEEEcc-CCCEEEEeeCCCcE
Q 042260           70 PVMSYDQHTNNVMAVGFQC---DG-NWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NTVVLHP-NQTELISGDQNGNI  143 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~---~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~s~~~d~~i  143 (174)
                        ..++.|...+..++|.+   +. .+++.-..-..+-+|+..++.....+.....+ .|+.+.| +.+.+..-+..|.+
T Consensus       103 --~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v  180 (1062)
T KOG1912|consen  103 --NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV  180 (1062)
T ss_pred             --hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence              33557788888898876   23 35666666779999999888766655544444 5688888 44556655666777


Q ss_pred             EEEeCCC
Q 042260          144 RVWDLTA  150 (174)
Q Consensus       144 ~iwd~~~  150 (174)
                      .+-+.-.
T Consensus       181 l~~~~l~  187 (1062)
T KOG1912|consen  181 LSCKDLG  187 (1062)
T ss_pred             EEEeccC
Confidence            7766553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.74  E-value=0.012  Score=45.62  Aligned_cols=112  Identities=8%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             CCceEEEecCCcEEEEEcCCCCCCCeEEeec----------CCCCEEEEEEeeCCCEEEEe----------cCCCcEEEE
Q 042260           46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ----------HTNNVMAVGFQCDGNWMYSG----------SEDGTVKIW  105 (174)
Q Consensus        46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~t~----------~~dg~v~iw  105 (174)
                      ++..+..+..+.+.+-|+..........+..          .......++++++++.++-.          ...+.|.++
T Consensus       205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence            5666555555888888864432221111110          12233348899888876653          223589999


Q ss_pred             eCCCCeeEEeecccCcEEEEEEccCCC-EEEEee-CCCcEEEEeCCCCcceeec
Q 042260          106 DLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD-QNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       106 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~  157 (174)
                      |..+.+.+..+.....+..++++|+++ .|.+.. .++.|.+.|..+.+..-+.
T Consensus       285 D~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       285 DAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999999998888888999999999999 776555 5788999999998877776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.74  E-value=0.00058  Score=54.77  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             CCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260           35 DSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR  108 (174)
Q Consensus        35 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~  108 (174)
                      .+.+.+++++|+.. ++.+..|+.+.+||...+.    .......-....++|+|+|..++.|+.-|.+.+||+.
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            56788999999754 5667799999999987652    2222344567888999999999999999999999975

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00024  Score=57.40  Aligned_cols=79  Identities=16%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEE-EEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVN-TVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ...+.-+.|+|....||++..+|.+.+..++.++ +.++. ++.++. +++|.|+|+.++.|=.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567788899999999999999999999888443 55555 555566 99999999999999999999999999988776


Q ss_pred             ec
Q 042260          156 EL  157 (174)
Q Consensus       156 ~~  157 (174)
                      +.
T Consensus        99 ~~  100 (665)
T KOG4640|consen   99 SF  100 (665)
T ss_pred             cc
Confidence            63

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.73  E-value=0.0027  Score=55.11  Aligned_cols=142  Identities=19%  Similarity=0.355  Sum_probs=86.5

Q ss_pred             CCcEEEEEeeC------CCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEecC----CcEEEEEcCCCCCCCe
Q 042260            3 QPSVILATASY------DKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAAGN----PHIRLFDVNSSSPQPV   71 (174)
Q Consensus         3 ~~~~~l~s~s~------D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~   71 (174)
                      +++.++|..+.      -+.+|||+-+ |+ +.+...+ ++--..++|.|+|.++++...    ..|-+|.-+ +.....
T Consensus       219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge  295 (928)
T PF04762_consen  219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE  295 (928)
T ss_pred             CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee
Confidence            36677777664      2579999865 54 3333332 222346899999999988642    335555532 211112


Q ss_pred             EEe--ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee----EEeecccCcEEEEEEccCCC-EEEEeeCCCcEE
Q 042260           72 MSY--DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC----QMEYESRAAVNTVVLHPNQT-ELISGDQNGNIR  144 (174)
Q Consensus        72 ~~~--~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~  144 (174)
                      ..+  ......+..+.|++++..|+.--.|. |.+|-+.....    ...+.....+..+.|+|... .|...+.+|.+.
T Consensus       296 F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~  374 (928)
T PF04762_consen  296 FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE  374 (928)
T ss_pred             EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence            222  23456799999999999999877665 99998876432    22223334455588888544 366666656665


Q ss_pred             EEeC
Q 042260          145 VWDL  148 (174)
Q Consensus       145 iwd~  148 (174)
                      .++.
T Consensus       375 ~~~~  378 (928)
T PF04762_consen  375 IYDF  378 (928)
T ss_pred             EEEE
Confidence            5443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0023  Score=51.20  Aligned_cols=145  Identities=14%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--------eEEEecCCcEEEEEcCCCCCCCeEE
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--------YLAAAGNPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~d~~i~i~d~~~~~~~~~~~   73 (174)
                      +..+-++.+++....++--|+++|+.+..++.++. |+-+.+.|+.+        .+++-.+..+.-||.+......+..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            33444566677777788889999999999988765 66666776532        3455567788889988654322222


Q ss_pred             eecC----CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           74 YDQH----TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        74 ~~~~----~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      -+.|    ..+..|.+-..+ .+||.||.+|.||+||.-.......+ ..+.+|.-+....+|..|++.+ +..+.+-|.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            2222    233445444433 47899999999999996222111112 4477899888888998776543 557777666


Q ss_pred             C
Q 042260          149 T  149 (174)
Q Consensus       149 ~  149 (174)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            5

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.72  E-value=0.00031  Score=52.57  Aligned_cols=144  Identities=19%  Similarity=0.433  Sum_probs=94.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc-ee----EEeecCC------------CCeEEEEEcCC---CceEEEecCCcEEEEEcC
Q 042260            5 SVILATASYDKTIKFWEAKSGR-CY----RTIQYPD------------SQVNRLEITPN---KHYLAAAGNPHIRLFDVN   64 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~-~~----~~~~~~~------------~~v~~~~~~~~---~~~~~~~~d~~i~i~d~~   64 (174)
                      +.++++|...|.|.+|..+... |.    -.++.|+            ..|..+.|-..   +.++.++.|.+|++|.+.
T Consensus        38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            5689999999999999754322 11    1223332            24566666543   457888889999999875


Q ss_pred             CCCC----------------------------------------CCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEE
Q 042260           65 SSSP----------------------------------------QPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVK  103 (174)
Q Consensus        65 ~~~~----------------------------------------~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~  103 (174)
                      ....                                        .+...+ +.|...+.++.++.+...+.++ .|=.|.
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrIN  196 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRIN  196 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeee
Confidence            3310                                        001111 3567778888888887776654 567899


Q ss_pred             EEeCCCCeeEE---eec-c-----cCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260          104 IWDLRAPVCQM---EYE-S-----RAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT  149 (174)
Q Consensus       104 iwd~~~~~~~~---~~~-~-----~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~  149 (174)
                      +|++.-..-..   .+. +     ...|++..|+|.. +.+.-.++.|.|++-|++
T Consensus       197 LWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         197 LWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            99986533211   111 1     2358899999964 556667788999999999

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.0082  Score=47.70  Aligned_cols=137  Identities=10%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             EEEEEeeCC--CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Eec---CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            6 VILATASYD--KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAG---NPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         6 ~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .++++.+.+  ..|.++|+.+++..+ +.........-.|+|++..++ .+.   ...|.+.|+.+++...+. ..+. .
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~-~  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK-N  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC-c
Confidence            455555544  457777887776433 332322233457999987544 332   125778888766543322 2221 1


Q ss_pred             CEEEEEEeeCCCEEEEecCC---------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCc--EEEEe
Q 042260           80 NVMAVGFQCDGNWMYSGSED---------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGN--IRVWD  147 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~iwd  147 (174)
                         ...|+|+|+.++..+..         ..|.+.|+....... +..........|+|+++.|+..+. .+.  +.+.+
T Consensus       323 ---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        323 ---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             ---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence               23899999988776543         267777887655332 222223345789999998765443 333  44555


Q ss_pred             CC
Q 042260          148 LT  149 (174)
Q Consensus       148 ~~  149 (174)
                      +.
T Consensus       399 l~  400 (419)
T PRK04043        399 LN  400 (419)
T ss_pred             cC
Confidence            53

>smart00320 WD40 WD40 repeats

Probab=97.63  E-value=0.00031  Score=34.47  Aligned_cols=30  Identities=30%  Similarity=0.681  Sum_probs=27.2

Q ss_pred             ccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260          118 SRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus       118 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      +...|.++.++|+++.+++++.|+.+++||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456799999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.63  E-value=0.0047  Score=39.47  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      .-|+.||.|..||+|+  ..+.+..+...+ .|..+.-...+.+..+..+++|-+|+-....+.    .+ ...++.++.
T Consensus        16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~-~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWR----iK-SK~~~~~~~   87 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFK--GDEIVAEITETD-KVTSLCSLGGGRFAYALANGTVGVYDRSQRLWR----IK-SKNQVTSMA   87 (111)
T ss_pred             ceEEEecCCcEEEEEe--CCcEEEEEeccc-ceEEEEEcCCCEEEEEecCCEEEEEeCcceeee----ec-cCCCeEEEE
Confidence            3588999999999996  446777777654 577777666677777778999988886432221    11 234466666


Q ss_pred             EeeC---CC-EEEEecCCCcEE
Q 042260           86 FQCD---GN-WMYSGSEDGTVK  103 (174)
Q Consensus        86 ~~~~---~~-~l~t~~~dg~v~  103 (174)
                      +..-   |. .|++|-++|.|-
T Consensus        88 ~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEcCCCCCceEEEEEecCCeEE
Confidence            5432   22 688888888774

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.57  E-value=0.011  Score=51.39  Aligned_cols=146  Identities=16%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             CcEEEEEeeC---CCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASY---DKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +|.+||+.-.   ...|.+|. ++|-....|..    .+..|..+.|+.++.+++....+.|.+|....--+-....+..
T Consensus       267 sG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~  345 (928)
T PF04762_consen  267 SGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRF  345 (928)
T ss_pred             CCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEc
Confidence            4566777665   34577776 44544444433    3457899999999999887765569999864322211111111


Q ss_pred             C-CCCEEEEEEee-CCCEEEEecCCCcEEEEeC-------------------------------CC-----CeeEEeecc
Q 042260           77 H-TNNVMAVGFQC-DGNWMYSGSEDGTVKIWDL-------------------------------RA-----PVCQMEYES  118 (174)
Q Consensus        77 ~-~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~-------------------------------~~-----~~~~~~~~~  118 (174)
                      . ...+..+.|++ +...+...+.+|.+..+++                               +.     |-+...+..
T Consensus       346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  346 SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            1 12233356665 2333444444344433332                               11     112233455


Q ss_pred             cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ..+|++++|+++...+++-..||.|.+|....
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            67899999999988899999999999998543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00024  Score=58.80  Aligned_cols=106  Identities=13%  Similarity=0.203  Sum_probs=84.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCCeEEee
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++|.|-..|+|-++|+.++....++..|...|.++.|-....++..+.          -+.+.+-|++++..+.....+
T Consensus       438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~  517 (1062)
T KOG1912|consen  438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ  517 (1062)
T ss_pred             eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence            4689999999999999999999888888989999999977655554332          123567889988666555433


Q ss_pred             -cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe
Q 042260           76 -QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV  111 (174)
Q Consensus        76 -~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~  111 (174)
                       ....+|..+..+..+++++-.-.|.-+.+||+++..
T Consensus       518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~  554 (1062)
T KOG1912|consen  518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR  554 (1062)
T ss_pred             CCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence             345789999999999999999999999999997643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.50  E-value=0.0093  Score=38.12  Aligned_cols=90  Identities=22%  Similarity=0.315  Sum_probs=61.2

Q ss_pred             CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEE
Q 042260           47 KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV  126 (174)
Q Consensus        47 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~  126 (174)
                      +.+++++.|..||+|+-..    .+... .....+..+..... ..|+-+..+|+|-+|+-....  .....+..+.+++
T Consensus        16 ~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--WRiKSK~~~~~~~   87 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--WRIKSKNQVTSMA   87 (111)
T ss_pred             ceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee--eeeccCCCeEEEE
Confidence            4578888999999998642    23322 34577888886655 568889999999999875432  2334455566666


Q ss_pred             Ecc-CC---CEEEEeeCCCcEE
Q 042260          127 LHP-NQ---TELISGDQNGNIR  144 (174)
Q Consensus       127 ~~~-~~---~~l~s~~~d~~i~  144 (174)
                      +.. ++   ..|++|=++|.|-
T Consensus        88 ~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEcCCCCCceEEEEEecCCeEE
Confidence            543 32   3688888888764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.47  E-value=0.0022  Score=53.11  Aligned_cols=108  Identities=13%  Similarity=0.273  Sum_probs=78.7

Q ss_pred             CCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCC----C---------eEEeecCCCCEEEEEEeeCCCEEEEecCCCc
Q 042260           36 SQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQ----P---------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT  101 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~----~---------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~  101 (174)
                      ....++.|+....+++. +.||.+++..+.+....    .         -.++.+|...|.-+.|+.+...+-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            45788999987777765 46888898877543211    1         1135689999999999999889999999999


Q ss_pred             EEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260          102 VKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus       102 v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i  143 (174)
                      |.+|-+-.+......   ..++.|.+++|+.+|..+...-+||.|
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav  139 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV  139 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence            999998765432211   235678899999888877666566554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.0047  Score=49.29  Aligned_cols=140  Identities=16%  Similarity=0.221  Sum_probs=76.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC--------CCC-CeEEeec
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS--------SPQ-PVMSYDQ   76 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~~~-~~~~~~~   76 (174)
                      .+|...+.+ .|.+||+++++.++.+...  +|..+.|++++.+++...+..+.+++....        +.. .......
T Consensus       118 ~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  118 NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEE
Confidence            345555544 8999999999999999754  388999999999888777778888775432        111 1222222


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ....|.+..|..+ -+++|...  .++.  +-.+..........++.=+...|..+.|.....|+.|..+.+.....
T Consensus       195 ~~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~  266 (443)
T PF04053_consen  195 ISERIKSGCWVED-CFIYTTSN--HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL  266 (443)
T ss_dssp             E-S--SEEEEETT-EEEEE-TT--EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred             ecceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence            2567888888765 55565554  6666  33333332223345666667777777888888888888877765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.056  Score=45.79  Aligned_cols=146  Identities=12%  Similarity=0.205  Sum_probs=90.5

Q ss_pred             EEEEEeeCCCc-----EEEEECCC------Ccee--EEee---cC--CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCC
Q 042260            6 VILATASYDKT-----IKFWEAKS------GRCY--RTIQ---YP--DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSS   66 (174)
Q Consensus         6 ~~l~s~s~D~~-----v~vwd~~~------~~~~--~~~~---~~--~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~   66 (174)
                      .+|++-+.|+.     +++||++.      .++.  +.+.   .+  ..++..++++.+-..++.| .+|.|.++..+..
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            46777766655     99999753      2333  1221   12  4567788888776666655 6777777754321


Q ss_pred             CC--CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260           67 SP--QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        67 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      ..  ....-......+|+++++..+++.++-......|.+|.+....+ .... .++...+|-.+++....+++++.. .
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~  236 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F  236 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e
Confidence            11  11121223467899999998888633333445788888864332 2223 456678999999877766666544 6


Q ss_pred             EEEEeCCCCc
Q 042260          143 IRVWDLTANS  152 (174)
Q Consensus       143 i~iwd~~~~~  152 (174)
                      +.+||.....
T Consensus       237 l~fY~sd~~~  246 (933)
T KOG2114|consen  237 LYFYDSDGRG  246 (933)
T ss_pred             EEEEcCCCcc
Confidence            9999988543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.00039  Score=49.72  Aligned_cols=142  Identities=10%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      ++..-|.|+.|+=++++..+. .+....+...-..+  .-...+++++.++.+.+|.+.......-........-.+.+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~--~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV--TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeec--ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            344556677777777654332 11111111111111  124456777789999998876321111111001111122222


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-cc-CcEEEEEEccCCCEEEEe--eCCCcEEEEeCCC
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SR-AAVNTVVLHPNQTELISG--DQNGNIRVWDLTA  150 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~s~--~~d~~i~iwd~~~  150 (174)
                      .-.++.+.++++.||.||.|++...+...... +. .++........++++..+  |.|..++.|++..
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            23356688999999999999998766554333 22 445555555566666666  6677777777764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.011  Score=49.35  Aligned_cols=138  Identities=9%  Similarity=0.161  Sum_probs=90.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .++++=|..+|.|++++.... . .....|...      .-.|.+++++ .||.+-|-.+-+.+......+   ...+.+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiks  117 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKS  117 (846)
T ss_pred             cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec---CCccee
Confidence            457888999999999986543 2 222222221      4467777665 567788877766543333332   356778


Q ss_pred             EEEeeC-----CCEEEEecCCCcEEEEeCC---CCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           84 VGFQCD-----GNWMYSGSEDGTVKIWDLR---APVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        84 ~~~~~~-----~~~l~t~~~dg~v~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ++++|+     .+.+++|+.-| +.++.-+   ....+......++|.++.|  .|+++|=+..+| |++||+...+..-
T Consensus       118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceee
Confidence            888886     66799999998 7666532   2222333355788999999  567777776555 9999999887664


Q ss_pred             ec
Q 042260          156 EL  157 (174)
Q Consensus       156 ~~  157 (174)
                      ..
T Consensus       194 ~i  195 (846)
T KOG2066|consen  194 NI  195 (846)
T ss_pred             cc
Confidence            43

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.39  E-value=0.045  Score=43.40  Aligned_cols=48  Identities=13%  Similarity=0.407  Sum_probs=39.5

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcC
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN   64 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~   64 (174)
                      .|++|+.. |+.+.++.-..+.+-.+.|+.+..+++...||.+++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            48888744 6677777655578999999998888888899999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.38  E-value=0.013  Score=46.67  Aligned_cols=132  Identities=11%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee--cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA--GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN   91 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   91 (174)
                      ..+.+++++... +.....-.++|....|.|.+.-++ .+  -...+.++|++.+    +. +......-..+-|+|+++
T Consensus       255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~-~~~Pe~~rNT~~fsp~~r  328 (561)
T COG5354         255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LR-FYFPEQKRNTIFFSPHER  328 (561)
T ss_pred             ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc----eE-EecCCcccccccccCccc
Confidence            346677666332 222223356899999998655433 33  2456789999875    11 223334455667899999


Q ss_pred             EEEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee------CCCcEEEEeCCCCc
Q 042260           92 WMYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD------QNGNIRVWDLTANS  152 (174)
Q Consensus        92 ~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~  152 (174)
                      +++.++-|   |.+.+||......+..-.......-+.|+|++.++.+..      .|..|+|||+.-..
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            99987765   679999987665444222234456778999999877542      36779999998544

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.33  E-value=0.029  Score=46.34  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             CcEEEEEcCCC---CCCCeEEeecCCCCEEEEEEeeCCCEEEEe-cCCCcEEEEeCCCCe------------eEEeeccc
Q 042260           56 PHIRLFDVNSS---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSG-SEDGTVKIWDLRAPV------------CQMEYESR  119 (174)
Q Consensus        56 ~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~------------~~~~~~~~  119 (174)
                      +.+.+.|.++.   ... +..+-.-......+.++|+|++++.+ ..+.+|.+.|+.+.+            ...+....
T Consensus       296 n~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            45677776651   111 22222234667889999999986655 558899999997743            23333444


Q ss_pred             CcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          120 AAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       120 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ......+|.++++...+---|..|-.||+..
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            5556778999988777777899999999987

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.33  E-value=0.0026  Score=50.06  Aligned_cols=136  Identities=17%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC---C----CCCCeEEeecCCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS---S----SPQPVMSYDQHTN   79 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~~   79 (174)
                      =|+.|...|.|.||....++...  ......-....+.+-     ...+..-.+-|+..   .    +..+...++...+
T Consensus        15 Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g   87 (395)
T PF08596_consen   15 ELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-----SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG   87 (395)
T ss_dssp             EEEEEETTS-EEEEEEEE--------------------S-------GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred             eEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-----cccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence            47888889999999876644332  000011111111111     01112223333321   1    1234444556689


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---------cCcEEEEEEc-----cCC---CEEEEeeCCCc
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---------RAAVNTVVLH-----PNQ---TELISGDQNGN  142 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------~~~v~~~~~~-----~~~---~~l~s~~~d~~  142 (174)
                      +|++++.+ +=.+++.|..+|.+.|.|+|.+.++....-         ...+.++.|.     .++   ..+++|+..|.
T Consensus        88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            99999986 455899999999999999999998765321         2346677775     122   46788999999


Q ss_pred             EEEEeCCC
Q 042260          143 IRVWDLTA  150 (174)
Q Consensus       143 i~iwd~~~  150 (174)
                      +.+|.+..
T Consensus       167 v~~fkIlp  174 (395)
T PF08596_consen  167 VLTFKILP  174 (395)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998863

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0044  Score=50.92  Aligned_cols=104  Identities=19%  Similarity=0.326  Sum_probs=75.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQH   77 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~   77 (174)
                      ..+++-|+.-|.+.+|+..+++ .+..+.  ....+..+..++...+++++. .+.|.++.+....+......    ..|
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            4578889999999999866554 333332  344566678888877777654 55678888766433322211    236


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      ...|++++|+++++.+++|..-|.|.+-.+..
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEech
Confidence            78899999999999999999999998887765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.0053  Score=49.15  Aligned_cols=89  Identities=17%  Similarity=0.439  Sum_probs=60.0

Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260           14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD   89 (174)
Q Consensus        14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~   89 (174)
                      -.++-|||++ +..+..  ..+++=+++-|+|.|.+++.++    .|.+-+||..+.  +.+..+.+  ...+-..|+|+
T Consensus       293 PAkvtifnlr-~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~a--~~tt~~eW~Pd  365 (566)
T KOG2315|consen  293 PAKVTIFNLR-GKPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIAKFKA--ANTTVFEWSPD  365 (566)
T ss_pred             cceEEEEcCC-CCEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhcccccc--CCceEEEEcCC
Confidence            3445556544 233332  3445667888999988765443    477999999764  44444333  45666789999


Q ss_pred             CCEEEEecC------CCcEEEEeCCC
Q 042260           90 GNWMYSGSE------DGTVKIWDLRA  109 (174)
Q Consensus        90 ~~~l~t~~~------dg~v~iwd~~~  109 (174)
                      |.+|+|+..      |+.++||+...
T Consensus       366 Ge~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  366 GEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             CcEEEEEeccccEEecCCeEEEEecC
Confidence            999999864      78899999754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.022  Score=48.04  Aligned_cols=147  Identities=12%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-eEEEEEcCC-CceEEEecCC-----cEEEEEcCCC---C-CCCe-
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNP-----HIRLFDVNSS---S-PQPV-   71 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~d~-----~i~i~d~~~~---~-~~~~-   71 (174)
                      ++..++-|+.||.|.+.+ +.-+.++.++.++.. +..+..... ..+++.+.|+     .+++|+++.-   . +.+. 
T Consensus        34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            345688899999887775 233445677665544 444433333 2344445433     4799998532   1 2222 


Q ss_pred             --EEe----ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeC---CC--CeeEEeecccCcEEEEEEccCCCE-EEEeeC
Q 042260           72 --MSY----DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL---RA--PVCQMEYESRAAVNTVVLHPNQTE-LISGDQ  139 (174)
Q Consensus        72 --~~~----~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~---~~--~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~  139 (174)
                        ..+    +....+++.++.+.+-+.+|.|-.+|.|..+.=   |.  .+.......+.+|+.+++..++.. +++++ 
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-  191 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-  191 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-
Confidence              111    123567888999888999999999999988752   11  122233345789999999888776 33343 


Q ss_pred             CCcEEEEeCCCCc
Q 042260          140 NGNIRVWDLTANS  152 (174)
Q Consensus       140 d~~i~iwd~~~~~  152 (174)
                      ...|.+|.+....
T Consensus       192 t~~V~~y~l~gr~  204 (933)
T KOG2114|consen  192 TEQVMLYSLSGRT  204 (933)
T ss_pred             cceeEEEEecCCC
Confidence            4469999998544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.27  E-value=0.028  Score=44.15  Aligned_cols=147  Identities=7%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCC----------CeE-EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDS----------QVN-RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----------~v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .+..++.++.+.-+|.++|+.+-.......          .+. ..... ++.++++..++.+..+|.++++..=...  
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~--  147 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTK--  147 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCccccc--
Confidence            456677889999999999988766543320          010 11111 3455666677889999988875322111  


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEE--EEcc--CCCEEEEeeCCCcEEEEeCCCC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV--VLHP--NQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .. ..+.+.-.. .+..++.+..++.+.-+|.++.+....+....+...+  .-+|  .+..++.++.++.+...|.+++
T Consensus       148 ~~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G  225 (394)
T PRK11138        148 VA-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG  225 (394)
T ss_pred             CC-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence            11 111111011 1345666778899999999988877655432211000  0011  1235667778899999999988


Q ss_pred             cceeecC
Q 042260          152 SCSCELG  158 (174)
Q Consensus       152 ~~~~~~~  158 (174)
                      +..++.+
T Consensus       226 ~~~W~~~  232 (394)
T PRK11138        226 QLIWQQR  232 (394)
T ss_pred             hhhheec
Confidence            8776643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0029  Score=51.36  Aligned_cols=90  Identities=17%  Similarity=0.307  Sum_probs=64.3

Q ss_pred             CCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE-EEEEeeCCCEEEEecCCCcEEEEeCCCCeeE
Q 042260           36 SQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM-AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ  113 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~  113 (174)
                      ..+..+.|+|.-.+++.. .++.+-+.-++   .+.+.+.+-+..++. +++|.++|+.++-|-.||+|++.|+.++-..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            347788999987777765 45666665554   344555555556666 9999999999999999999999999886655


Q ss_pred             Ee--ecccCcEEEEEEc
Q 042260          114 ME--YESRAAVNTVVLH  128 (174)
Q Consensus       114 ~~--~~~~~~v~~~~~~  128 (174)
                      ..  +.....|.+..|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            44  3334456666664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.21  E-value=0.019  Score=45.89  Aligned_cols=132  Identities=11%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +++++. ..||...++..........     +......|.+.+.+.+.-.+..|+++.--.+........+   ..+..+
T Consensus        44 gr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~---~~~~~I  114 (443)
T PF04053_consen   44 GRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP---FSVEKI  114 (443)
T ss_dssp             SSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S---S-EEEE
T ss_pred             CCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC---cccceE
Confidence            444444 5577778887433332221     2344567777777655555677888632222111111111   123332


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      -.   |..|...+.+ .|.+||..+.+.+..+.... |..+.|+++++.|+..+.+ .+.+++.+..
T Consensus       115 f~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  115 FG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             E----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             Ec---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            22   6766666555 89999999998888777553 8999999999999988766 5777665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0016  Score=50.95  Aligned_cols=143  Identities=16%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             EEEEEeeCCCcEEEEECCC--Cce-eEEeecCCCCeEEEEEcCCCceEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            6 VILATASYDKTIKFWEAKS--GRC-YRTIQYPDSQVNRLEITPNKHYLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .+++++|.||.+|.|....  |-+ +.-+..|-..+.+++.+-++.++.+. . |..+|++|+.+-.......+..-.+.
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~  100 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF  100 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence            5789999999999997443  222 23334566667888888888777764 3 67899999876433222222111121


Q ss_pred             EEEEEEeeCC----CEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           81 VMAVGFQCDG----NWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        81 v~~~~~~~~~----~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      +.. .. +.|    ..-++.-.++.+.++|-+...+...+   -+.++|..+-+++.+..+.+....|.|.-|..+.
T Consensus       101 a~w-v~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen  101 AEW-VT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             eEE-ec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            211 11 122    12233346789999998765443222   3568999999999999999988889999999884

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.17  E-value=0.027  Score=44.26  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=86.5

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCC----C---eEEEEEcC---CCceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDS----Q---VNRLEITP---NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      ++.++.++.+...|.++|+.+-.......    .   ...+..+|   ++.+++++.++.+..+|..+++.  .  +...
T Consensus       208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--~--W~~~  283 (394)
T PRK11138        208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--V--WKRE  283 (394)
T ss_pred             EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--E--Eeec
Confidence            45567788899999998887544432110    0   01111122   44555666678888889877642  1  1111


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ........  ..+..++.++.+|.+...|..+.+.......  .....+.++  .+..|+.++.||.+...|..+++...
T Consensus       284 ~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        284 YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            11111111  2466777888899999999988765543321  111222222  35667888999999999999998887


Q ss_pred             ecCc
Q 042260          156 ELGL  159 (174)
Q Consensus       156 ~~~~  159 (174)
                      +...
T Consensus       360 ~~~~  363 (394)
T PRK11138        360 QQKV  363 (394)
T ss_pred             EEEc
Confidence            6543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.17  E-value=0.066  Score=40.84  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=80.4

Q ss_pred             CcEEEEECCCC-----ce--eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCC-CCCeEEeecCCCCEEEEEE
Q 042260           15 KTIKFWEAKSG-----RC--YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS-PQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        15 ~~v~vwd~~~~-----~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~   86 (174)
                      |.|.++++...     +.  +.... .+++|.++.-- .+. ++++.+..+.+|++...+ ......+.. ...+.++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecc-eEEEEEEec
Confidence            88999998874     21  22222 25678887655 344 555556889999998765 333332222 235555554


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCC-CeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRA-PVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                        .+++++.|.....+.++..+. ......+   .....+.++.+.++++.++.+..+|.+.++....
T Consensus       138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence              366889998888888774432 2211111   2245588888886667889999999999988873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.16  E-value=0.0027  Score=34.14  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .....|..+.|+|+...||.|+.+|.|.++.+ +.++.
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            34567999999999999999999999999998 44443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.12  E-value=0.042  Score=43.88  Aligned_cols=136  Identities=16%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe------------cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260           11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA------------GNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      .+.++++++|.+..+..+.....-...=..+.|++.|.++..-            +...+.|++++... .++.  ..-.
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~--~~~~  274 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVE--KDLK  274 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-ccee--cccc
Confidence            3456667777766555554443333233456777777654321            12346777776332 2222  1346


Q ss_pred             CCEEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCC
Q 042260           79 NNVMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTAN  151 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~  151 (174)
                      +.|...+|.|.++.|+..  -.+-.+.++|++.- ... ....+.=+.+.|+|.++.++.++-|   |.|-+||....
T Consensus       275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~-~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF-YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccceeeeecccCCceeEEecccccceeecccccc-eEE-ecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            889999999988876554  46788999999865 222 2333445778899999988876654   56888887753

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=97.10  E-value=0.04  Score=39.44  Aligned_cols=108  Identities=13%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             cCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---C---cEEEE---eCC----CC
Q 042260           44 TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---G---TVKIW---DLR----AP  110 (174)
Q Consensus        44 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g---~v~iw---d~~----~~  110 (174)
                      .+.+.++++.+...|..|++......+...+.. .+.|..+.++..|++++|--++   .   .+|+|   ...    ++
T Consensus        26 ~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   26 GGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             cCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            343455565667789999998666566666654 4889999999999999995322   2   55653   322    11


Q ss_pred             ee---------------------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260          111 VC---------------------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       111 ~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ..                     +.+.....++.+++..|....|+.|+. +.+.||-+.....
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~  167 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTI  167 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEE
Confidence            11                     111223456788999986555666654 4788888876544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.06  E-value=0.0021  Score=54.09  Aligned_cols=107  Identities=16%  Similarity=0.277  Sum_probs=80.4

Q ss_pred             EEEEEcCCCceEEEe-----cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE
Q 042260           39 NRLEITPNKHYLAAA-----GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ  113 (174)
Q Consensus        39 ~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~  113 (174)
                      +-.+|+|...+++.+     ..|.+.||- ++++++.-.+++.|   +.+++|+|..-.++.|=.-|.+.+|.....+..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            346799988877654     256677764 34555544444444   556999998778888888999999998765432


Q ss_pred             -EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          114 -MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       114 -~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                       ....++.+|.-+.|+|+|+.+.++..=|.|.+|-..
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence             223567899999999999999999999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.03  E-value=0.054  Score=41.33  Aligned_cols=128  Identities=15%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             CCcEEEEECCCCc-eeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC--CCCCCeEEeecCCCCEEEEEEee
Q 042260           14 DKTIKFWEAKSGR-CYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS--SSPQPVMSYDQHTNNVMAVGFQC   88 (174)
Q Consensus        14 D~~v~vwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~   88 (174)
                      .+.|.+|++...+ ....-.. ....+.++....  .+++.+ .-..+.++.++.  .+... ..-+.....+.++.+-.
T Consensus       106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v~~~~~l~  182 (321)
T PF03178_consen  106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWVTAAEFLV  182 (321)
T ss_dssp             TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEEEEEEEE-
T ss_pred             cCEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccEEEEEEec
Confidence            4789999998877 3322222 233566665543  344444 445677665433  21222 22233456688888886


Q ss_pred             CCCEEEEecCCCcEEEEeCCC--------C---eeEEeecccCcEEEE---EEcc--CCC------EEEEeeCCCcEE
Q 042260           89 DGNWMYSGSEDGTVKIWDLRA--------P---VCQMEYESRAAVNTV---VLHP--NQT------ELISGDQNGNIR  144 (174)
Q Consensus        89 ~~~~l~t~~~dg~v~iwd~~~--------~---~~~~~~~~~~~v~~~---~~~~--~~~------~l~s~~~d~~i~  144 (174)
                      +++.++.+..+|.+.++....        .   .....+..+..|+++   .+.|  .+.      .++.++.+|.|-
T Consensus       183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            667999999999999988752        1   223445667778887   5555  222      377788899887

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.014  Score=47.05  Aligned_cols=126  Identities=13%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec------------CCcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG------------NPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~   72 (174)
                      |.+|+|-=.-| |.+|--++-..++.+. | ..|.-+.|+|..+++++-+            ...+.|||++++....  
T Consensus       222 GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr--  296 (698)
T KOG2314|consen  222 GTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR--  296 (698)
T ss_pred             ceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc--
Confidence            34454444443 7788544444455554 3 3488899999988887632            1469999999985433  


Q ss_pred             Eeec--CCCCEE-EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEE
Q 042260           73 SYDQ--HTNNVM-AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        73 ~~~~--~~~~v~-~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s  136 (174)
                      .+..  ....+. -..|+-+++++|--.. ..|.|++..+-...-... .-..|....|+|.++.||-
T Consensus       297 sF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  297 SFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            3333  222233 4468889998886555 478888876532221111 1356888888888887763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.93  E-value=0.016  Score=50.51  Aligned_cols=120  Identities=12%  Similarity=0.219  Sum_probs=78.8

Q ss_pred             EEEEcCCCceEEEe-----cC-CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec---CCCcEEEEeCCCC
Q 042260           40 RLEITPNKHYLAAA-----GN-PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS---EDGTVKIWDLRAP  110 (174)
Q Consensus        40 ~~~~~~~~~~~~~~-----~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~  110 (174)
                      .+.|..+|.+++.+     .+ +.+++||-+ +.....  .....+.-.+++|.|.|..+++-.   +|+.|.++..+..
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~--se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST--SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc--cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            47888899888764     24 689999986 322221  112234556788999999988853   4667888876532


Q ss_pred             e---eEEeeccc-CcEEEEEEccCCCEEEE---eeCCCcEEEEeCCCCcceeecCcccc
Q 042260          111 V---CQMEYESR-AAVNTVVLHPNQTELIS---GDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus       111 ~---~~~~~~~~-~~v~~~~~~~~~~~l~s---~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      .   -...+... .+|..++|+-++..|+.   ......|++|=+.+-..-.+.++++.
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~  335 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS  335 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence            1   11112222 23899999999998887   44555699999998766555443333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.90  E-value=0.033  Score=48.68  Aligned_cols=105  Identities=15%  Similarity=0.324  Sum_probs=64.1

Q ss_pred             CCcEEEEE-----eeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCC-CCe
Q 042260            3 QPSVILAT-----ASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSP-QPV   71 (174)
Q Consensus         3 ~~~~~l~s-----~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~   71 (174)
                      .++.++|+     ...-+.++|||.+ |.. .....+ ...=..++|.|+|.++++-    .+..|.++.-+.-.- ...
T Consensus       205 gDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~  282 (1265)
T KOG1920|consen  205 GDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV  282 (1265)
T ss_pred             cCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence            35666666     3333889999977 432 222222 2223568999999888774    345688776532110 111


Q ss_pred             EEeecCCCCEEEEEEeeCCCEEEE---ecCCCcEEEEeCCC
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWMYS---GSEDGTVKIWDLRA  109 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l~t---~~~dg~v~iwd~~~  109 (174)
                      ..++....++..++|+.++..++.   ......|++|-+..
T Consensus       283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            222233344899999999998877   45555699998865

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.89  E-value=0.00043  Score=56.25  Aligned_cols=134  Identities=20%  Similarity=0.315  Sum_probs=80.9

Q ss_pred             CCCcEEEEECCCC--ceeEEeec---CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260           13 YDKTIKFWEAKSG--RCYRTIQY---PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        13 ~D~~v~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .|..++|||+.++  .+..+...   .......++|-.+.+++.+| ....+.++|++......   ....+.-+..+..
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG~tV  203 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQGITV  203 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---hhhhhhhccccee
Confidence            4677999998876  22222221   12234467777665655444 56689999997432111   1123345566666


Q ss_pred             ee-CCCEEEEecCCCcEEEEeC-CC---CeeEEeec---ccCcEEEEEEccCCCEE-EEeeC-CCcEEEEeCCC
Q 042260           87 QC-DGNWMYSGSEDGTVKIWDL-RA---PVCQMEYE---SRAAVNTVVLHPNQTEL-ISGDQ-NGNIRVWDLTA  150 (174)
Q Consensus        87 ~~-~~~~l~t~~~dg~v~iwd~-~~---~~~~~~~~---~~~~v~~~~~~~~~~~l-~s~~~-d~~i~iwd~~~  150 (174)
                      +| .++++++-. ||.+.+||. +.   +..+....   ....+..+++.|..+-+ ++... .++|+++|+..
T Consensus       204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            77 778877766 999999993 32   11111111   12348899999987654 44444 46899999984

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.79  E-value=0.086  Score=42.57  Aligned_cols=141  Identities=11%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--------ceEEEecCCcEEEEEcCCCCCCCeEE-ee
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--------HYLAAAGNPHIRLFDVNSSSPQPVMS-YD   75 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~d~~i~i~d~~~~~~~~~~~-~~   75 (174)
                      +-++..|+....+.--|++.|+.+..+..++..  -+.+.|..        ..+++-++..+.--|.+..+.+.... ..
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK  557 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK  557 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence            334455676677777889999999999887654  45666642        23555556655445655443221111 00


Q ss_pred             --cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           76 --QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        76 --~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                        .......+.+-. ...+++.+|..|.||+||.-.-.. ......+..|--+....+|..+++.+.+ .+.+-|+.
T Consensus       558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             hccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence              011223333222 345899999999999999532211 1122346678888888899888766543 67777776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.0028  Score=53.47  Aligned_cols=100  Identities=19%  Similarity=0.361  Sum_probs=72.9

Q ss_pred             cEEEEEee----CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATAS----YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s----~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ..+++.++    ..|+|-|| .++|++-+.+..+ -.+.+++|+|...+++.++ -+.+.+|.-.+.+...  ....|..
T Consensus        27 ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht--v~~th~a  102 (1416)
T KOG3617|consen   27 EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT--VVETHPA  102 (1416)
T ss_pred             CceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeee--eccCCCC
Confidence            34555554    45778888 5677765544433 2467799999877777664 5668888876553222  2346889


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLR  108 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~  108 (174)
                      .+..+.|+++|+.+.|+..-|.+.+|...
T Consensus       103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99999999999999999999999999864

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.0056  Score=52.68  Aligned_cols=69  Identities=17%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           89 DGNWMYSGSEDGTVKIWDLRAPVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        89 ~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+..++.|++.|.+...|++.-...  .......+|.+++|+.+|+.++.|-.+|-|.+||+.+++...-+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            4567899999999999888764321  12234678999999999999999999999999999997766544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.76  E-value=0.16  Score=38.54  Aligned_cols=126  Identities=12%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             CCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEec---C---CcEEEEEcCCCCCCCeEE-----eecC
Q 042260           13 YDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAG---N---PHIRLFDVNSSSPQPVMS-----YDQH   77 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~---d---~~i~i~d~~~~~~~~~~~-----~~~~   77 (174)
                      .+.++-+-|..+|+.+.....    +...+..+++.+++..+.+..   +   ..--+.-.+.++......     ...-
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL  215 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence            356677778888988777544    456799999999988776642   1   111222222222111111     1123


Q ss_pred             CCCEEEEEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260           78 TNNVMAVGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ..-+-+++++.++.+++. +-..+.+.+||..+...+..... ..+..++..+++ ++++.+..
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence            467889999999987754 55678999999998887654333 334555655555 55555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.023  Score=46.96  Aligned_cols=113  Identities=16%  Similarity=0.275  Sum_probs=80.8

Q ss_pred             CeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee---
Q 042260           37 QVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC---  112 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---  112 (174)
                      .+.-.+++....+++ ++..|-+.+|.-..+.... .+..+..+.+.....+++..++|+|+..|.|-++.++....   
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            344445555556655 4466778999887765433 22333445666777888899999999999999998865221   


Q ss_pred             --EEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          113 --QMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       113 --~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                        ....  .|+..|++++|++++..|.+|...|+|-.-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1111  2467899999999999999999999998877776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.74  E-value=0.1  Score=43.28  Aligned_cols=149  Identities=16%  Similarity=0.277  Sum_probs=85.3

Q ss_pred             cEEEEEeeCCC------cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecC------CcEEEEEcCCCCCCCe
Q 042260            5 SVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGN------PHIRLFDVNSSSPQPV   71 (174)
Q Consensus         5 ~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~   71 (174)
                      +.+++.||.++      ++..||..+++-......+..+ -.+++...+..++++|.+      ..+..||...+++...
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            55778888884      6889998887543333222222 223444444344455545      2357888888877665


Q ss_pred             EEeecCCCCEEEEEEeeCCCEEEEecCCCc-----EEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCC--
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-----VKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNG--  141 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~--  141 (174)
                      ..+...+......  .-+|...|.|+.||.     +..||.++.+....-..   +.......+  ++...+.||.++  
T Consensus       365 a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  365 APMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS  440 (571)
T ss_pred             CCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence            4444333332222  236778888888864     66777766543322212   122222232  677778887554  


Q ss_pred             ----cEEEEeCCCCcceeec
Q 042260          142 ----NIRVWDLTANSCSCEL  157 (174)
Q Consensus       142 ----~i~iwd~~~~~~~~~~  157 (174)
                          ++..||..+..+...-
T Consensus       441 ~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             cccceEEEEcCCCCceeecC
Confidence                4788999888766443

>PHA02713 hypothetical protein; Provisional

Probab=96.73  E-value=0.041  Score=45.43  Aligned_cols=145  Identities=8%  Similarity=0.032  Sum_probs=75.8

Q ss_pred             CcEEEEEeeCCC-----cEEEEECCCCceeE--EeecCCCCeEEEEEcCCCceEEEec-C--------------------
Q 042260            4 PSVILATASYDK-----TIKFWEAKSGRCYR--TIQYPDSQVNRLEITPNKHYLAAAG-N--------------------   55 (174)
Q Consensus         4 ~~~~l~s~s~D~-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~-d--------------------   55 (174)
                      ++.+.+.||.++     ++..||..+++-..  ...........+..  ++.+.+.|+ +                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            356777888764     47889987654221  11111111112222  445444332 2                    


Q ss_pred             ---CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCC-CeeEEeecc---cCcE
Q 042260           56 ---PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRA-PVCQMEYES---RAAV  122 (174)
Q Consensus        56 ---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~-~~~~~~~~~---~~~v  122 (174)
                         ..+..||..++++..+..+...+....  +..-+++..+.|+.+      ..+..||..+ .........   ....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~--~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPG--VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCc--EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence               236678887776654433322222222  223356666767654      2467888886 343322111   1223


Q ss_pred             EEEEEccCCCEEEEeeCCC--cEEEEeCCCCcce
Q 042260          123 NTVVLHPNQTELISGDQNG--NIRVWDLTANSCS  154 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~  154 (174)
                      ...++  ++...+.|+.|+  .+-.||+.+.+..
T Consensus       507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            33333  667778888888  6778888876544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.71  E-value=0.17  Score=41.11  Aligned_cols=147  Identities=11%  Similarity=0.160  Sum_probs=85.0

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCC------C-e-EEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDS------Q-V-NRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~------~-v-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +..++.|+.|.-.|.++|+.+-.+.....      . + ..+.....+.++++..++.+.-+|.++++.  +-..+....
T Consensus        64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~--~W~~~~~~~  141 (488)
T cd00216          64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ--VWKFGNNDQ  141 (488)
T ss_pred             EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE--eeeecCCCC
Confidence            55677789999999999988766543321      0 1 111222225566666788888899887743  211111111


Q ss_pred             -----CEE-EEEEeeCCCEEEEec---------CCCcEEEEeCCCCeeEEeecccC---------------------cE-
Q 042260           80 -----NVM-AVGFQCDGNWMYSGS---------EDGTVKIWDLRAPVCQMEYESRA---------------------AV-  122 (174)
Q Consensus        80 -----~v~-~~~~~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~---------------------~v-  122 (174)
                           .+. ...+. + ..++.++         .++.+.-.|..+.+....+....                     .+ 
T Consensus       142 ~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw  219 (488)
T cd00216         142 VPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW  219 (488)
T ss_pred             cCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence                 011 11111 2 3344443         36788888988877665543311                     01 


Q ss_pred             EEEEEccCCCEEEEeeCCC------------------cEEEEeCCCCcceeecC
Q 042260          123 NTVVLHPNQTELISGDQNG------------------NIRVWDLTANSCSCELG  158 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~~~~~~  158 (174)
                      ...++.+.+..|+.++.|+                  .|.-.|.++++..++..
T Consensus       220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            1345555667787777665                  68889999998887753

The alignment model contains an 8-bladed beta-propeller.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.65  E-value=0.12  Score=38.41  Aligned_cols=111  Identities=14%  Similarity=0.272  Sum_probs=69.9

Q ss_pred             EEEeeCCCcEEEEEC--C---CCceeEEeec---CCCCeEEEEEcCCCceEEEec------------CCcEEEEEcCCCC
Q 042260            8 LATASYDKTIKFWEA--K---SGRCYRTIQY---PDSQVNRLEITPNKHYLAAAG------------NPHIRLFDVNSSS   67 (174)
Q Consensus         8 l~s~s~D~~v~vwd~--~---~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~   67 (174)
                      |+.-.++|.++=|-+  .   ..+..+++..   ....|.++.++|...++..++            +..+..|-+.++.
T Consensus       112 Llvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  112 LLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS  191 (282)
T ss_pred             EEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence            445566777766654  2   2344555543   245799999999865554432            1245566553322


Q ss_pred             CCC------------------------eEEe---ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc
Q 042260           68 PQP------------------------VMSY---DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES  118 (174)
Q Consensus        68 ~~~------------------------~~~~---~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~  118 (174)
                      +-.                        ...+   ......|..+..+|+|+.+|+...+|.|.+|++.+...+..+..
T Consensus       192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            100                        0001   12346688899999999999999999999999988766655543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.64  E-value=0.17  Score=37.51  Aligned_cols=143  Identities=13%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE----------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS----------   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----------   73 (174)
                      .+..|+.|..+| +.+++.........+. +...|..+..-+.-..+..-.|+.+.++++..-.......          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence            355677888888 9999983333222222 2223888888776555555557999999986532221100          


Q ss_pred             --eecCCCCEEEEE--EeeCCCEEEEecCCCcEEEEeCCCC-----eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           74 --YDQHTNNVMAVG--FQCDGNWMYSGSEDGTVKIWDLRAP-----VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        74 --~~~~~~~v~~~~--~~~~~~~l~t~~~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                        .-.....+...+  -...+...........+.+|.....     ....++.....+.+++|.  ++.++.|..+ ...
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~  160 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFY  160 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceE
Confidence              001122333333  1122333333344448888886542     344556667889999997  5667666654 478


Q ss_pred             EEeCCCC
Q 042260          145 VWDLTAN  151 (174)
Q Consensus       145 iwd~~~~  151 (174)
                      +.|++++
T Consensus       161 ~idl~~~  167 (275)
T PF00780_consen  161 LIDLNTG  167 (275)
T ss_pred             EEecCCC
Confidence            8888854

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.59  E-value=0.037  Score=44.75  Aligned_cols=112  Identities=14%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             CeEEEEEcCCCceEEE-ec---CCcEEEEEcCCCC--CCCeEEeecCCCCEEEEEEeeCCCEEEEe---cCCCcEEEEeC
Q 042260           37 QVNRLEITPNKHYLAA-AG---NPHIRLFDVNSSS--PQPVMSYDQHTNNVMAVGFQCDGNWMYSG---SEDGTVKIWDL  107 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~-~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~t~---~~dg~v~iwd~  107 (174)
                      .|...+|-|.|.-++. ++   ...+.+|-+++..  +..+..+  .......+-|+|.|++++.+   |..|.+.++|+
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            4667888897764443 33   2357888887432  2223323  23567788999999998775   56789999998


Q ss_pred             CCCeeEEe-ecccCcEEEEEEccCCCEEEEeeCC------CcEEEEeCCC
Q 042260          108 RAPVCQME-YESRAAVNTVVLHPNQTELISGDQN------GNIRVWDLTA  150 (174)
Q Consensus       108 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~  150 (174)
                      ....+..+ ...+...+.+.|.|.|+++.++++-      ..-+||++.-
T Consensus       525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            75333222 2234557889999999999987643      3356777653

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.58  E-value=0.16  Score=42.23  Aligned_cols=95  Identities=17%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CCcEEEEECCC-----CceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCC------CC---eEEeecC
Q 042260           14 DKTIKFWEAKS-----GRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSP------QP---VMSYDQH   77 (174)
Q Consensus        14 D~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~------~~---~~~~~~~   77 (174)
                      +.+|.+.|.++     .+....+... .....+.++|++++++.+  .+..+.+.|+...+.      .+   +..-..-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            56799999887     3455555543 457899999999987665  477899999875321      11   1110011


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      ...-...+|.++|+...|---|..|-.||+..
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            23345678888888888888899999999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.53  E-value=0.1  Score=41.63  Aligned_cols=133  Identities=16%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCC--cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNP--HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ..+.++|+++++........ ..-..-.|+|++..++-  ..|+  .|.+.|+.......   +..-.+.-..-.|+|+|
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCC
Confidence            45888888887765554422 22334578998876543  2344  47777887765332   22222333366789999


Q ss_pred             CEEEEecC-CCcEEE--EeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeC-CCc--EEEEeCCCCc
Q 042260           91 NWMYSGSE-DGTVKI--WDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQ-NGN--IRVWDLTANS  152 (174)
Q Consensus        91 ~~l~t~~~-dg~v~i--wd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~  152 (174)
                      +.++-.+. .|.-.|  .|+..... ..++..... ..-.++|++..++..+. +|.  |.+.|+.++.
T Consensus       294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            98776644 455444  44544332 223333222 26678999998876553 344  6777776554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.52  E-value=0.0026  Score=53.87  Aligned_cols=125  Identities=16%  Similarity=0.224  Sum_probs=86.7

Q ss_pred             eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEE
Q 042260           27 CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVK  103 (174)
Q Consensus        27 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~  103 (174)
                      .+.++..+....++++|+... .+++++-.|.++++...++...  ..+++|...++-+.-+.+|....+.+.-.  ...
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHH
Confidence            455566667778899999754 4555667899999999888543  34679999999999888888777655433  578


Q ss_pred             EEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          104 IWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       104 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +|++.+- ...+.|   ..-.++.|+.....=+.|+......+||+++++...+
T Consensus      1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            8998751 111222   2345566766544445566656799999999876655

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.45  E-value=0.28  Score=39.83  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEE---------EEEc-CCC----ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNR---------LEIT-PNK----HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~---------~~~~-~~~----~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +|.-.|.++|+.+-.++........         .... -++    .+++++.++.+...|.++++..  -.....   .
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~--W~~~~~---~  331 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI--SARPEV---E  331 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe--eEeEee---c
Confidence            7999999999987665422111110         0000 112    1334456778888888887432  111100   0


Q ss_pred             EEEEEeeCCCEEEEe------------------cCCCcEEEEeCCCCeeEEeeccc---------CcE--EEEEEccCCC
Q 042260           82 MAVGFQCDGNWMYSG------------------SEDGTVKIWDLRAPVCQMEYESR---------AAV--NTVVLHPNQT  132 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~------------------~~dg~v~iwd~~~~~~~~~~~~~---------~~v--~~~~~~~~~~  132 (174)
                      ..++..+  ..++.+                  ..+|.+.-.|+++.+.+......         .+.  ..++.  .+.
T Consensus       332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~  407 (488)
T cd00216         332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN  407 (488)
T ss_pred             cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC
Confidence            1112222  222221                  23567777888777766554332         111  12222  557


Q ss_pred             EEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260          133 ELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus       133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      .|+.++.||.+.-+|.++++...+.+++...
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~  438 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKELWKFRTPSGI  438 (488)
T ss_pred             eEEEECCCCeEEEEECCCCceeeEEECCCCc
Confidence            7888999999999999999999887665544

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.43  E-value=0.27  Score=37.37  Aligned_cols=141  Identities=8%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC--CCCC-eEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS--SPQP-VMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~-~~~~~~~~~   79 (174)
                      .++.+++.++.-....-||.....-..--+....+|..+.|.|++.+...+..+.++.=+....  .... .........
T Consensus       154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred             CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCce
Confidence            3566666666555556676443222222223456799999999988877777777877662111  1110 110111224


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                      .+..++|.+++...+.|+....++  .....+.-...    ........+.|.+..+-++. +++|.+.-|
T Consensus       234 ~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             -EEEEEESSSS-EEEEESTT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             eeEEEEecCCCCEEEEeCCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            489999998887777776654333  33333221111    12455788888765554444 578877665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.30  E-value=0.41  Score=38.12  Aligned_cols=149  Identities=8%  Similarity=0.127  Sum_probs=67.7

Q ss_pred             CcEEEEEeeC--C----CcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEEec--------------------
Q 042260            4 PSVILATASY--D----KTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAAAG--------------------   54 (174)
Q Consensus         4 ~~~~l~s~s~--D----~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~--------------------   54 (174)
                      ++.+++|+-.  +    |-+.+.|-++.+.........   ..-.+..+.|....+++++                    
T Consensus       140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~  219 (461)
T PF05694_consen  140 DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGK  219 (461)
T ss_dssp             S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred             CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccc
Confidence            3556666433  2    237788877777666655422   2235677888655555543                    


Q ss_pred             -CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC--E-EEEecCCCcEEEE-eCCCCe----eEEeecc-------
Q 042260           55 -NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN--W-MYSGSEDGTVKIW-DLRAPV----CQMEYES-------  118 (174)
Q Consensus        55 -d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-l~t~~~dg~v~iw-d~~~~~----~~~~~~~-------  118 (174)
                       ...+.+||+.+.+......+.....-.+.+.|..+..  + |+.+.-.+.|-.| .-....    .+.++..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence             4578999998764333332222222355666654322  2 3333333333333 222221    1111111       


Q ss_pred             -----------cCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCCCc
Q 042260          119 -----------RAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTANS  152 (174)
Q Consensus       119 -----------~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~  152 (174)
                                 +.-|++|.++.++++|..... +|.||.||+..+.
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                       234799999999999987664 8999999999754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.29  E-value=0.3  Score=36.28  Aligned_cols=135  Identities=16%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec-CCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~   83 (174)
                      +.+++-||..+.++--|.++|+..-.... ..++.+-+.--.+..+.+...+.+.+.+..+++.  .-.+.. ..-++ .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~~~vk~-~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVILETVKV-R   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhh--eeeeeehhhhcc-c
Confidence            46788899999999999999987544322 2234332222123345566788899888887732  111111 11122 2


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EEEEEccCCCEEEEeeCCCcE
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d~~i  143 (174)
                      .....++..|..|+.|+....-|.++..++...+-+..+ .+-+++|-...|..+...|.+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            234568899999999999999999998888765433322 334455533334444444443

>PHA02713 hypothetical protein; Provisional

Probab=96.28  E-value=0.27  Score=40.72  Aligned_cols=148  Identities=9%  Similarity=0.063  Sum_probs=72.6

Q ss_pred             CcEEEEEeeCC------CcEEEEECCCCceeEEeecCCCCeE-EEEEcCCCceEE-EecC-----CcEEEEEcCCCCCCC
Q 042260            4 PSVILATASYD------KTIKFWEAKSGRCYRTIQYPDSQVN-RLEITPNKHYLA-AAGN-----PHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~d-----~~i~i~d~~~~~~~~   70 (174)
                      .+.+.+.||.+      .++..||..++.-...-..+..... +++.. ++++.+ +|.+     ..+..||..++++..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            35667777764      3477888776643211111111111 22222 445444 4433     237789988776654


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCCC-----------------------cEEEEeCCCCeeEEeeccc-CcEEEEE
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----------------------TVKIWDLRAPVCQMEYESR-AAVNTVV  126 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----------------------~v~iwd~~~~~~~~~~~~~-~~v~~~~  126 (174)
                      ...++........+  .-+++..+.|+.++                       .+..||.++......-... ......+
T Consensus       382 ~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~  459 (557)
T PHA02713        382 LPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV  459 (557)
T ss_pred             CCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence            43333322222222  23577777777653                       4677887765443221111 1111111


Q ss_pred             EccCCCEEEEeeCC------CcEEEEeCCC-Ccce
Q 042260          127 LHPNQTELISGDQN------GNIRVWDLTA-NSCS  154 (174)
Q Consensus       127 ~~~~~~~l~s~~~d------~~i~iwd~~~-~~~~  154 (174)
                      ..-++...+.|+.+      ..+..||.++ .+..
T Consensus       460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             EEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence            22245655666654      2367899887 5654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.025  Score=48.93  Aligned_cols=96  Identities=25%  Similarity=0.507  Sum_probs=61.7

Q ss_pred             EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEE--
Q 042260           51 AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVL--  127 (174)
Q Consensus        51 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~--  127 (174)
                      ++++.+++-..|...+ ..+...-..-.++|.+++|+.+|+.++.|-.+|.|.+||+........+ .+..+...+.+  
T Consensus       104 i~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~  182 (1206)
T KOG2079|consen  104 IGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVG  182 (1206)
T ss_pred             EEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEE
Confidence            3345567777777553 2222222334688999999999999999999999999999886655444 23334333333  


Q ss_pred             -ccCCCEEEEeeCCCcEEEEeCC
Q 042260          128 -HPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       128 -~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                       ..+...++++...|.  +|+..
T Consensus       183 ~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  183 RTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EeCCCcEEEEccCCCc--eEEEE
Confidence             233345777766664  55443

>PHA03098 kelch-like protein; Provisional

Probab=96.08  E-value=0.43  Score=39.13  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             cEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec---C----CcEEEEEcCCCCCCCe
Q 042260            5 SVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG---N----PHIRLFDVNSSSPQPV   71 (174)
Q Consensus         5 ~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~   71 (174)
                      +.+.+.||.+     .++..||..+++-...-..+.... .+++.. ++.+.+.++   +    ..+..||..++++...
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            5566777765     346778876654321111111111 112222 344444333   1    3477888877665543


Q ss_pred             EEeecCCCCEEEEEEeeCCCEEEEecCCC--------cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDG--------TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--------~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ...+........  ...+++.++.|+.+.        .+.+||..+......-..   +.....+.+  ++..++.|+.+
T Consensus       422 ~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYGGCA--IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccCceE--EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            322222222222  223566666666432        388888876544322111   111122222  56666777654


Q ss_pred             -----CcEEEEeCCCCcce
Q 042260          141 -----GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -----~~i~iwd~~~~~~~  154 (174)
                           ..+..||.++.+..
T Consensus       498 ~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        498 YEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CCcccceeEEEeCCCCEEE
Confidence                 46888998877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.05  E-value=0.11  Score=37.64  Aligned_cols=66  Identities=15%  Similarity=0.416  Sum_probs=49.5

Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEee---------------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---------------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ...++.++..-..+|.+++||+++.++....               .....|..+.+..+|..|++-+ +|....||..=
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456888999999999999999987654332               2345688889988888777654 57788888875


Q ss_pred             Cc
Q 042260          151 NS  152 (174)
Q Consensus       151 ~~  152 (174)
                      +.
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.95  E-value=0.45  Score=35.26  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             EeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC------
Q 042260           10 TASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT------   78 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------   78 (174)
                      .....++|.+|.....     +...++..+ ..+..+.|.++  .++.+..+...+.|+.++....+.......      
T Consensus       109 ~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~~~--~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~  185 (275)
T PF00780_consen  109 CVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFLGN--KICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSR  185 (275)
T ss_pred             EEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEeCC--EEEEEeCCceEEEecCCCCceEEeCccCCcchhhhc
Confidence            3444558999987653     355666555 46888888733  344343556788888866544433221111      


Q ss_pred             ----CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           79 ----NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        79 ----~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                          .++..... +++.+++.-  |..-.+-|....... ..+.-...+.++++  ..++|++.+.+ .|.+|++.+++.
T Consensus       186 ~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~l  259 (275)
T PF00780_consen  186 NSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGEL  259 (275)
T ss_pred             ccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcE
Confidence                12222222 234555532  333333444332211 23333446667777  45788877665 599999999999


Q ss_pred             eeecCcc
Q 042260          154 SCELGLQ  160 (174)
Q Consensus       154 ~~~~~~~  160 (174)
                      .+.+..+
T Consensus       260 vQ~i~~~  266 (275)
T PF00780_consen  260 VQTIPLP  266 (275)
T ss_pred             EEEEECC
Confidence            8887743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.91  E-value=0.035  Score=29.81  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=28.6

Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~  109 (174)
                      ...|..+.|+|...++|.+..+|.|.++.+..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45688999999999999999999999998853

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.90  E-value=0.43  Score=39.66  Aligned_cols=149  Identities=15%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             CcEEEEEeeCCCc-----EEEEECCCCcee--EEeecCCCCeEEEEEcCCCceEEEec-C------CcEEEEEcCCCCCC
Q 042260            4 PSVILATASYDKT-----IKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHYLAAAG-N------PHIRLFDVNSSSPQ   69 (174)
Q Consensus         4 ~~~~l~s~s~D~~-----v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~-d------~~i~i~d~~~~~~~   69 (174)
                      .+.+.|.||.||.     +-.||.++.+--  ............+.+  .+.+.+.++ +      ..+..||..++.+.
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            3567888999875     666776654422  111111111222222  455544433 2      34678998888776


Q ss_pred             CeEEeecCCCCEEEEEEeeCCCEEEEecCCCc-----EEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCC
Q 042260           70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-----VKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      ....+...+.... ++ .-++...+.|+.|+.     |..+|.++.+....-...   ..+...+.  ++...+.|+.||
T Consensus       458 ~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~  533 (571)
T KOG4441|consen  458 LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDG  533 (571)
T ss_pred             ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccC
Confidence            6555443333333 22 235677777877763     777888765544332221   22222222  456667788776


Q ss_pred             c-----EEEEeCCCCcceeecC
Q 042260          142 N-----IRVWDLTANSCSCELG  158 (174)
Q Consensus       142 ~-----i~iwd~~~~~~~~~~~  158 (174)
                      .     |..||..+.......+
T Consensus       534 ~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  534 NNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ccccceeEEcCCCCCceeeCCC
Confidence            4     7788888776554433

>PHA02790 Kelch-like protein; Provisional

Probab=95.86  E-value=0.58  Score=38.00  Aligned_cols=143  Identities=10%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             cEEEEEeeCCC-----cEEEEECCCCceeEE--eecCCCCeEEEEEcCCCceEEEec-C--CcEEEEEcCCCCCCCeEEe
Q 042260            5 SVILATASYDK-----TIKFWEAKSGRCYRT--IQYPDSQVNRLEITPNKHYLAAAG-N--PHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~~~~~   74 (174)
                      +.+++.||.++     ++..||..+++....  ...+......+.  -++.+.+.|+ +  ..+..||...+++.....+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            45677787653     477788877553221  111111112222  2455544443 2  3477888766655433333


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcE-EEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAV-NTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ...+.....  ...+|+..+.|+.++   .+..||.++...........+. ...+...++...+.|+   .+..||.++
T Consensus       350 ~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence            322222222  234677777777553   4778888765543321111111 1111223555555563   467888877


Q ss_pred             Ccce
Q 042260          151 NSCS  154 (174)
Q Consensus       151 ~~~~  154 (174)
                      .+..
T Consensus       425 ~~W~  428 (480)
T PHA02790        425 NTWT  428 (480)
T ss_pred             CcEe
Confidence            6544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.86  E-value=0.71  Score=39.40  Aligned_cols=96  Identities=13%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      .|..+..+++|.+++-.+...+.+-.+... +.....++.-...+.|=.+ +-+..+.                    ..
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r-~g~~~~~~~g~~~i~Crt~-~v~~~~~--------------------~~  143 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRR-WGKNGEFEDGKKEINCRTV-PVDERFF--------------------TS  143 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccc-cCccccccCCCcceeEEEE-Eechhhc--------------------cC
Confidence            466777888888877777777777666321 0000001111111211111 1011111                    11


Q ss_pred             cccCcEEEEEEccC---CCEEEEeeCCCcEEEEeCCCCcce
Q 042260          117 ESRAAVNTVVLHPN---QTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       117 ~~~~~v~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .....|..+.|||.   +..|+.-++|+++|+||+......
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCC
Confidence            12345667777775   367777777888888888755443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.86  E-value=0.5  Score=35.12  Aligned_cols=105  Identities=10%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             ceEE-EecCCcEEEEEcCCCCCCCeEEeecC-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EE
Q 042260           48 HYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NT  124 (174)
Q Consensus        48 ~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~  124 (174)
                      .+++ ++..+.+.--|..+++..    ++.. ..++.+-+.. -|++++-|+..|.+.+-+.+++.....+..-..| ..
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~----We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLI----WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEE----eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            3443 344566677777666321    2211 1233333333 4788999999999999999987554444333333 23


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      ..+.+++..+..|+.|++...-|.++..|+++.
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            355778999999999999999999999999884

>PHA02790 Kelch-like protein; Provisional

Probab=95.84  E-value=0.62  Score=37.80  Aligned_cols=142  Identities=10%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             CcEEEEEeeCC--CcEEEEECCCCceeEEeecCCCCeE-EEEEcCCCceEEE-ecC---CcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATASYD--KTIKFWEAKSGRCYRTIQYPDSQVN-RLEITPNKHYLAA-AGN---PHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~-~~d---~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ++.+.+.||.+  .++..||..+++-...-..+..... +++. -++.+.+. |.+   ..+..||.+++.+.....+..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            35667778764  3577888765533221111111111 1222 24454443 322   346778887766544332222


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC-----CcEEEEeC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN-----GNIRVWDL  148 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~  148 (174)
                      .+.....+  .-+++..+.|+   .+.++|.++......-..   +.....+++  ++...+.||.+     ..+..||.
T Consensus       397 ~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        397 PHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             ccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence            22222222  23566666663   577888876554322211   122233333  56677777754     35778888


Q ss_pred             CCCcc
Q 042260          149 TANSC  153 (174)
Q Consensus       149 ~~~~~  153 (174)
                      ++.+.
T Consensus       470 ~~~~W  474 (480)
T PHA02790        470 RTYSW  474 (480)
T ss_pred             CCCeE
Confidence            77654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.74  E-value=0.33  Score=32.17  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=54.4

Q ss_pred             CEEEEecCCCcEEEEeCCCCe--------eEEeecccCcEEEEEEcc---C--CCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           91 NWMYSGSEDGTVKIWDLRAPV--------CQMEYESRAAVNTVVLHP---N--QTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        91 ~~l~t~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~---~--~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      -.|+.++..|.|.|++.....        .+..+.....|.+++--+   +  ...|+.|+ ...+..||+...+..+.-
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyk   89 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYK   89 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhh
Confidence            356667777888888765321        223344556677775543   2  23455555 457999999999999888


Q ss_pred             CcccceeEEEEEe
Q 042260          158 GLQYGLRTFLFYH  170 (174)
Q Consensus       158 ~~~~~~~~~~~~~  170 (174)
                      +.+.++++.++..
T Consensus        90 e~~DGvn~i~~g~  102 (136)
T PF14781_consen   90 EVPDGVNAIVIGK  102 (136)
T ss_pred             hCccceeEEEEEe
Confidence            8899999998864

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.73  E-value=0.042  Score=39.62  Aligned_cols=101  Identities=11%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             EEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEE-EEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCEE
Q 042260            7 ILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNR-LEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNVM   82 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~-~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~   82 (174)
                      -++.|+.||.|.+|...-. +....+..-...+.. +..-.++ ...++++++.+|.|.+...+.....  ..|. ....
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--g~h~~~~~e  149 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--GQHNFESGE  149 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee--ccccCCCcc
Confidence            4778999999999987622 111111111222322 2222222 3345567888999988665432222  2344 4555


Q ss_pred             EEEEeeCCCEEEEe--cCCCcEEEEeCCC
Q 042260           83 AVGFQCDGNWMYSG--SEDGTVKIWDLRA  109 (174)
Q Consensus        83 ~~~~~~~~~~l~t~--~~dg~v~iwd~~~  109 (174)
                      ....+..+++++..  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            55556667777777  7888888888764

>PHA03098 kelch-like protein; Provisional

Probab=95.66  E-value=0.76  Score=37.68  Aligned_cols=146  Identities=10%  Similarity=0.041  Sum_probs=70.5

Q ss_pred             cEEEEEeeCCC------cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecC-----CcEEEEEcCCCCCCCe
Q 042260            5 SVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGN-----PHIRLFDVNSSSPQPV   71 (174)
Q Consensus         5 ~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d-----~~i~i~d~~~~~~~~~   71 (174)
                      +.+++.||.++      .+..||..+++-...-..+.... .+++.. ++.+.+ +|.+     ..+..||..++++...
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            45667777653      46778877655422111111111 122222 344444 4432     2366788877665443


Q ss_pred             EEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeEEeecccC--cEEEEEEccCCCEEEEeeCCC--
Q 042260           72 MSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQMEYESRA--AVNTVVLHPNQTELISGDQNG--  141 (174)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~--  141 (174)
                      ..++..+.....+  ..+++..+.|+.+      ..+..||..+.........+.  .-.+.+ ..++...+.||.+.  
T Consensus       374 ~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        374 PPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYID  450 (534)
T ss_pred             CCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCCC
Confidence            3332222222222  2356777777632      357888887654332211111  111222 23555666666432  


Q ss_pred             ------cEEEEeCCCCcce
Q 042260          142 ------NIRVWDLTANSCS  154 (174)
Q Consensus       142 ------~i~iwd~~~~~~~  154 (174)
                            .+..||..+.+..
T Consensus       451 ~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CCcccceEEEecCCCCcee
Confidence                  3888998877644

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.56  E-value=0.6  Score=38.43  Aligned_cols=65  Identities=15%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260           99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus        99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      -|.+.-+|+.+.+.........+...-.+.-.+..++.++.||.++.+|.++++.+++.++....
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~  504 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI  504 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence            46788899998887766554333211112224567778888999999999999999988766544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.44  E-value=0.27  Score=42.17  Aligned_cols=96  Identities=10%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             EEeeCCCcEEEEECCCCc--eeEEee---cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            9 ATASYDKTIKFWEAKSGR--CYRTIQ---YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         9 ~s~s~D~~v~vwd~~~~~--~~~~~~---~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.|-.+..+.-||.+-..  .+....   .......+++-+.+|.+++++.+|.||+||-...  .....+++-..+|.+
T Consensus       546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~--~AKT~lp~lG~pI~~  623 (794)
T PF08553_consen  546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK--RAKTALPGLGDPIIG  623 (794)
T ss_pred             EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch--hhhhcCCCCCCCeeE
Confidence            356667789999977532  232111   1234567888888899999999999999995321  222234555689999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDL  107 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~  107 (174)
                      +..+.+|+++++.+.. .+.+.+.
T Consensus       624 iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  624 IDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             EEecCCCcEEEEeecc-eEEEEEE
Confidence            9999999998887765 5666663

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.44  E-value=1.2  Score=37.44  Aligned_cols=105  Identities=10%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             cCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe--eCCCEEEEecCCCcEEEEeCC-------CC--e
Q 042260           44 TPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ--CDGNWMYSGSEDGTVKIWDLR-------AP--V  111 (174)
Q Consensus        44 ~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~t~~~dg~v~iwd~~-------~~--~  111 (174)
                      +..++..+.. ....+.|||.+.+.......+ ...+.|.++.|.  +++..+.+.+-.+.|.++--.       .+  .
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~  116 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA  116 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence            3344443333 345699999987643322233 235789999986  588899999999999998631       11  1


Q ss_pred             eEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          112 CQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       112 ~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+..+    ..+.+|.+..|.++|..++..+  ..+.++|-.-.
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~~  158 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWLD  158 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCcC
Confidence            22222    2346899999999998776543  46888876544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.97  Score=34.52  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCceEEEecC--CcEEEEEcCC--C---CCCCeEEeecCCCCEEEEEEeeCCCEEEEe
Q 042260           24 SGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNS--S---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSG   96 (174)
Q Consensus        24 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~i~d~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~   96 (174)
                      .+..++-+..+-..-++++|+|+++.+..+..  +.+.-|++..  .   ............+..-.++...+|++-+++
T Consensus       151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence            34444444433344578999999977666543  5566666542  1   111122222334556667777788877554


Q ss_pred             cCCC-cEEEEeCCCCeeEEeeccc-CcEEEEEEc-cCCCEEEE
Q 042260           97 SEDG-TVKIWDLRAPVCQMEYESR-AAVNTVVLH-PNQTELIS  136 (174)
Q Consensus        97 ~~dg-~v~iwd~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~s  136 (174)
                      -.+| .|..|+.. .+....+..+ ..+.+++|- |+.+.|+.
T Consensus       231 ~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         231 VWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             ccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            4444 99999998 5555555554 667777774 34455543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=1  Score=38.10  Aligned_cols=142  Identities=12%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe-EEeecCCCCEEEEEEeeCCCEEE
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV-MSYDQHTNNVMAVGFQCDGNWMY   94 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~   94 (174)
                      .|+||+.. |+.+..+.-....+-.+.|+.+..+++...++.+++|++........ ...+.....|..+.+..+|-.+.
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl  143 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL  143 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEE
Confidence            36777643 56555443333478899999999999999999999999864422221 11222233455555444444444


Q ss_pred             EecCC-------CcEEEEeCCC---------------C----eeE---------------------Eeecc-cCcEEEEE
Q 042260           95 SGSED-------GTVKIWDLRA---------------P----VCQ---------------------MEYES-RAAVNTVV  126 (174)
Q Consensus        95 t~~~d-------g~v~iwd~~~---------------~----~~~---------------------~~~~~-~~~v~~~~  126 (174)
                      +.+.+       +...+|.+..               +    .+.                     ..+.. .+.+.-+.
T Consensus       144 t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~  223 (829)
T KOG2280|consen  144 TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKIS  223 (829)
T ss_pred             ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEE
Confidence            33321       1122222211               1    000                     00111 24578889


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          127 LHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       127 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++|+.++|+-=..+|.|.+-++...++.|+++
T Consensus       224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            99999999988899999998888888777765

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.07  E-value=0.67  Score=38.69  Aligned_cols=103  Identities=9%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CeEEEEEcCCCceEEEec-------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC----------
Q 042260           37 QVNRLEITPNKHYLAAAG-------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED----------   99 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----------   99 (174)
                      .+...+++|++..++...       +..-.||-...+....... .+  .....-.|+++|+.+++.+..          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            466788899888765432       3334555543222122221 12  236777899998877776533          


Q ss_pred             --CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260          100 --GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV  145 (174)
Q Consensus       100 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  145 (174)
                        +.+.+.++.......  .....|..+.|+|+|..++... ++.|.+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence              222222333322211  2245799999999999887654 355655

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=1.3  Score=34.76  Aligned_cols=147  Identities=15%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .+.++...+..|.+.|..+....+...... ....+++++++..+..+.    +..+.+.|-.+...  ......-..+ 
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~~~~vG~~P-  162 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TATIPVGNTP-  162 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EEEEecCCCc-
Confidence            355666667889999987777776665443 467788999886655432    35566666655432  2222221223 


Q ss_pred             EEEEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEE-----eecccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCCc
Q 042260           82 MAVGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQM-----EYESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTANS  152 (174)
Q Consensus        82 ~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~  152 (174)
                      ..+++.++|+.++. -..++.+.+.|........     ..........+.+.|++..+...-.   ++.+...|..++.
T Consensus       163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence            88899999995544 4578999999977655442     1223344577889999997655433   3588888888766


Q ss_pred             ceee
Q 042260          153 CSCE  156 (174)
Q Consensus       153 ~~~~  156 (174)
                      ....
T Consensus       243 v~~~  246 (381)
T COG3391         243 VTAT  246 (381)
T ss_pred             EEEe
Confidence            5543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.02  E-value=1.2  Score=34.33  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=78.6

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEeec-CCCC--
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYDQ-HTNN--   80 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~-~~~~--   80 (174)
                      +.+.++|..+++.+..+...  ....+..+|+++.+....           .+.|.+||..+-.+.....++. ++..  
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47999999999887777632  344567889988776542           3458899987653322222222 1111  


Q ss_pred             --EEEEEEeeCCCEEEE--ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC-Ccce
Q 042260           81 --VMAVGFQCDGNWMYS--GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA-NSCS  154 (174)
Q Consensus        81 --v~~~~~~~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~-~~~~  154 (174)
                        ....+.+.++++++-  .+.-..|.+-|+...+...++..+.-..-   -|.+ ..+.+-+.||.+....+.+ ++..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEe
Confidence              112345556665443  34556677777777776665554332221   2322 3477778899988888883 4443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.83  E-value=0.68  Score=37.04  Aligned_cols=128  Identities=13%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             cEEEEEeeCCCcEEEE--ECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFW--EAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ..++++...|+...+|  |+.+++.. .+....+.-..=.|+|+|..++-..  .+  .|.+++.+...... .+...  
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~--  325 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSG--  325 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccC--
Confidence            5677888888885555  67666533 3433322223457889988655332  23  36666666554432 22222  


Q ss_pred             CCEEEEEEeeCCCEEEEecC-CCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE
Q 042260           79 NNVMAVGFQCDGNWMYSGSE-DGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  136 (174)
                      ..-..-.++|+|++|+..+. +|.  |.+.|+........+........-.+.|++..+..
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence            22226678999999888764 344  55555544332222222333334456777776553

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=0.85  Score=40.81  Aligned_cols=136  Identities=13%  Similarity=0.311  Sum_probs=81.7

Q ss_pred             eCCCcEEEEECCCCceeEEeecCCCCeEEEEE-cCC--------CceEEEecCCcEEEEEcC----CCCCCCe---EEee
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEI-TPN--------KHYLAAAGNPHIRLFDVN----SSSPQPV---MSYD   75 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~--------~~~~~~~~d~~i~i~d~~----~~~~~~~---~~~~   75 (174)
                      +.|..+.+|+.+++...+.+..-...|..+.. .|.        ..+++.+.--.+.++-+.    +......   ....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45888999999997777776654445554432 231        233443333344444432    1111111   1111


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC--------Cee-----------------EEee-cccCcEEEEEEcc
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA--------PVC-----------------QMEY-ESRAAVNTVVLHP  129 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--------~~~-----------------~~~~-~~~~~v~~~~~~~  129 (174)
                      .....|.++....+|+.|.+|-.|   .+|.+.-        .+|                 .... .+..+|..+++..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            224568888878889887777655   5555411        101                 0111 3356899999988


Q ss_pred             CCCEEEEeeCCCcEEEEeCCC
Q 042260          130 NQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       130 ~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ..+.+.+-++.|+|+.||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            778888999999999999997

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.68  E-value=0.21  Score=41.09  Aligned_cols=37  Identities=16%  Similarity=0.500  Sum_probs=28.7

Q ss_pred             cEEEEEEcc----CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          121 AVNTVVLHP----NQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       121 ~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+.++++++    +..+|++.+.|+++|+||++++.|....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            456666666    7788999999999999999999995543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.64  E-value=0.91  Score=33.57  Aligned_cols=114  Identities=11%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCceEEEecCC--cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-
Q 042260           35 DSQVNRLEITPNKHYLAAAGNP--HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-  111 (174)
Q Consensus        35 ~~~v~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-  111 (174)
                      ...+.++.|+|+...+.+..|.  .|.-++.. ++......+.+ .....++++..++.++++.-.++.+.+.++.... 
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            3458999999975544444333  34444542 33322233333 3678999998888888877678999998883211 


Q ss_pred             ---e----EEee--c--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          112 ---C----QMEY--E--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       112 ---~----~~~~--~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                         .    ...+  .  .+..+-.+++.|..+.|+.+-+....++|.++.
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence               1    1111  1  234588999999988888887777777777764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.00  E-value=2.2  Score=32.97  Aligned_cols=67  Identities=12%  Similarity=0.193  Sum_probs=46.1

Q ss_pred             cEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCcceeecCcccceeEEE
Q 042260          101 TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISG-DQNGNIRVWDLTANSCSCELGLQYGLRTFL  167 (174)
Q Consensus       101 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  167 (174)
                      .|=++|+.+.+.+..+....++.++.++.+.. .|++. ..++.+.+||..+++....+.-...-.+++
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~  338 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI  338 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence            47777888888888888777888999988665 55444 357899999999999888776444444443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.63  E-value=1.9  Score=36.72  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC-------C----c---------eeEEeecCCCCeEEEEEc--CCCceEEEecCC-cEE
Q 042260            3 QPSVILATASYDKTIKFWEAKS-------G----R---------CYRTIQYPDSQVNRLEIT--PNKHYLAAAGNP-HIR   59 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~~~~~d~-~i~   59 (174)
                      ....+|+.+..||.|.+|.+++       .    .         +...++. +..+++++++  ....+++++.+. .|.
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEE
Confidence            3456899999999999997521       1    0         1111121 3468999998  777788877654 466


Q ss_pred             EEEcCCC-CCCCeEEeecCCCCEEEEEEeeCC---C---EEEEecCCCcEEEEeCC
Q 042260           60 LFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDG---N---WMYSGSEDGTVKIWDLR  108 (174)
Q Consensus        60 i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~t~~~dg~v~iwd~~  108 (174)
                      +|-.... +.........+..+|.++.|.++.   .   .+++++-.|.+-+|++.
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            6654331 111111111356778899987643   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.55  E-value=2.2  Score=31.51  Aligned_cols=149  Identities=11%  Similarity=0.214  Sum_probs=85.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCC-CeE-----E--
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQ-PVM-----S--   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~-~~~-----~--   73 (174)
                      .+.++++....+.|.-.+. +|+.++.+.... ....++.+-.++.++++.. ++.+.++++...... ...     .  
T Consensus        33 ~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~  111 (248)
T PF06977_consen   33 TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG  111 (248)
T ss_dssp             TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--
T ss_pred             CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc
Confidence            4678888888898888886 478888887543 4578888888777777664 667888888432211 111     1  


Q ss_pred             ee-cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---CeeEEe-----ec----ccCcEEEEEEccCCCE-EEEeeC
Q 042260           74 YD-QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---PVCQME-----YE----SRAAVNTVVLHPNQTE-LISGDQ  139 (174)
Q Consensus        74 ~~-~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~~~-----~~----~~~~v~~~~~~~~~~~-l~s~~~  139 (174)
                      .. .++..+..++|++.++.++.+-+....+++.++.   ......     +.    ....+.++.++|.... ++....
T Consensus       112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e  191 (248)
T PF06977_consen  112 FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE  191 (248)
T ss_dssp             -S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT
T ss_pred             cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC
Confidence            11 2445699999999888777777777777777653   111110     01    1234789999996554 555666


Q ss_pred             CCcEEEEeCCCCcce
Q 042260          140 NGNIRVWDLTANSCS  154 (174)
Q Consensus       140 d~~i~iwd~~~~~~~  154 (174)
                      +..|...| ..++..
T Consensus       192 s~~l~~~d-~~G~~~  205 (248)
T PF06977_consen  192 SRLLLELD-RQGRVV  205 (248)
T ss_dssp             TTEEEEE--TT--EE
T ss_pred             CCeEEEEC-CCCCEE
Confidence            77788888 444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.55  E-value=0.44  Score=34.50  Aligned_cols=63  Identities=11%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEe-------e-------cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTI-------Q-------YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~   66 (174)
                      .++.|+.-..+|.+++||+++++.+..-       .       .....|..+.++.+|..++.-.++....|+..-.
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4566888888999999999988764322       1       1234567777777777777666677777776433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.37  E-value=3.4  Score=33.10  Aligned_cols=125  Identities=15%  Similarity=0.288  Sum_probs=58.0

Q ss_pred             eCCCcEEEEECCCCceeEEeecCCCC--eEEEEEc--CCCc--eEEEecCCcE-EEEEcCCCCCCC--eEEee-------
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQYPDSQ--VNRLEIT--PNKH--YLAAAGNPHI-RLFDVNSSSPQP--VMSYD-------   75 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~--~~~~--~~~~~~d~~i-~i~d~~~~~~~~--~~~~~-------   75 (174)
                      .+-.++.+||+.+.+.++++...+..  ...+.|.  |...  ++.++....| ++|.-..+++..  +....       
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence            34678999999999999999865322  3445554  4332  2323333333 333222222111  11110       


Q ss_pred             ----------cCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCC---eeEEeecc-----------------cCcEEE
Q 042260           76 ----------QHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP---VCQMEYES-----------------RAAVNT  124 (174)
Q Consensus        76 ----------~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~---~~~~~~~~-----------------~~~v~~  124 (174)
                                .-..-++.+..+.+.++|+-.+. +|.+|-||+..+   +.+....-                 ....+.
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                      11345788889999998776654 899999998653   33322111                 123478


Q ss_pred             EEEccCCCEEEE
Q 042260          125 VVLHPNQTELIS  136 (174)
Q Consensus       125 ~~~~~~~~~l~s  136 (174)
                      +..+-+|+.|..
T Consensus       379 vqlS~DGkRlYv  390 (461)
T PF05694_consen  379 VQLSLDGKRLYV  390 (461)
T ss_dssp             EEE-TTSSEEEE
T ss_pred             EEEccCCeEEEE
Confidence            888889888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.03  E-value=3.1  Score=31.71  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCc----EEEEeCCCCee
Q 042260           57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT----VKIWDLRAPVC  112 (174)
Q Consensus        57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~----v~iwd~~~~~~  112 (174)
                      .+..||+.+.++..+..+... ......+...+++..+.|+.++.    +..||.++...
T Consensus       140 ~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       140 KSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            477888887766544322211 11112222345677777776542    45788876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.83  E-value=2.1  Score=36.00  Aligned_cols=62  Identities=13%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEc--cCCCEEEEeeCCCcEEEEeC
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLH--PNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~  148 (174)
                      +..++.-+..+....+.|||.+........  .....|.++.|.  |+++.+++.|-...|.+|--
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            334444333455668999999987755443  347789999885  67888888888888888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.71  E-value=2.7  Score=33.53  Aligned_cols=83  Identities=11%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEE--E-EEccC----------------CC-EEE
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT--V-VLHPN----------------QT-ELI  135 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~--~-~~~~~----------------~~-~l~  135 (174)
                      .....+..+..+|.+++.+...+=|+|.++|+.+...+.-++.-....+  + ...+.                .- .++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3456688899999999999888889999999987654332221110000  0 00000                01 133


Q ss_pred             EeeCCCcEEEEeCCCCcceeecC
Q 042260          136 SGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      -+-.-|.|.+|.++.++++..+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEE
Confidence            46678899999999999887654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.66  E-value=1.9  Score=35.27  Aligned_cols=80  Identities=13%  Similarity=0.077  Sum_probs=55.6

Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCC---------CCeeE---Eee-------c--ccCcEEEEEEccCC---CEEE
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLR---------APVCQ---MEY-------E--SRAAVNTVVLHPNQ---TELI  135 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~---------~~~~~---~~~-------~--~~~~v~~~~~~~~~---~~l~  135 (174)
                      .|..+-.++.|..++..+.+|.+.+.=.+         ..+..   .++       .  ..-.+...+|||+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            45666778899999999999977665321         11111   111       1  11235678999975   5677


Q ss_pred             EeeCCCcEEEEeCCCCcceeecCc
Q 042260          136 SGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      .-++|..||+||+.....++..+.
T Consensus       185 iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             EEecCcEEEEEecCCcchhhccCC
Confidence            778899999999999998888653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.54  E-value=3.6  Score=31.18  Aligned_cols=149  Identities=17%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCceEEE-e-c-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC
Q 042260           23 KSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED   99 (174)
Q Consensus        23 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d   99 (174)
                      +.|+++.....+ ....++.++|....-+. + . .-...++|....+..........+--.-.-.|+++|.++++.-+|
T Consensus        56 eaGk~v~~~~lp-aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd  134 (366)
T COG3490          56 EAGKIVFATALP-ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND  134 (366)
T ss_pred             cCCceeeeeecc-cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence            456777666544 35677888886543222 2 2 224678888765432222211111112223589999999987554


Q ss_pred             -----CcEEEEeCCCCee-EEeec-ccCcEEEEEEccCCCEEEEeeC------C------------CcEEEEeCCCCcce
Q 042260          100 -----GTVKIWDLRAPVC-QMEYE-SRAAVNTVVLHPNQTELISGDQ------N------------GNIRVWDLTANSCS  154 (174)
Q Consensus       100 -----g~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~------d------------~~i~iwd~~~~~~~  154 (174)
                           |.|-+||.+.... +.++. +.-....+.+.++++.++.+..      |            -++-+-|-.++...
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li  214 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI  214 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence                 7899999875322 23332 3445577888899998775421      0            12344454555556


Q ss_pred             eecCcccceeEEEEEeec
Q 042260          155 CELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~  172 (174)
                      .+.+++....+..+=|-+
T Consensus       215 ekh~Lp~~l~~lSiRHld  232 (366)
T COG3490         215 EKHTLPASLRQLSIRHLD  232 (366)
T ss_pred             hhccCchhhhhcceeeee
Confidence            667777666666655543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.13  E-value=3.9  Score=30.54  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=83.6

Q ss_pred             CcEEEEEeeCCC--cEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDK--TIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.++-|.|.-|  .|+.+|+.+|+.......+. ..-.++....+..+..+-.++.+.+||..+-  +.+..+.. ...
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~~~~y-~~E  131 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIGTFPY-PGE  131 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEEEEE--SSS
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc--eEEEEEec-CCc
Confidence            456667776666  59999999999887777553 3345666665544555666788899999764  33333332 345


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---cc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      =..++  .+++.++.......+.++|..+.+....+.   ..   ..++.+.+. +|...|=.=....|-.-|..++.+.
T Consensus       132 GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  132 GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV  208 (264)
T ss_dssp             --EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred             ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence            66666  356666666666689999987755444332   11   235666665 3443332223335666677777655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.89  E-value=0.78  Score=24.04  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CEEEEEEeeCC---CEEEEecCCCcEEEEeCCC
Q 042260           80 NVMAVGFQCDG---NWMYSGSEDGTVKIWDLRA  109 (174)
Q Consensus        80 ~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~  109 (174)
                      .+.++.|+|.+   .+++-+-.-|.|.++|+|+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47788999744   4788888889999999995

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.72  E-value=6.8  Score=32.66  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             CeEEEEEcCCC-----ceEEEecCCcEEEEEcCCC---CCCCeEEeecCCCC---E--EEEEEeeCCCEEE-EecCCCcE
Q 042260           37 QVNRLEITPNK-----HYLAAAGNPHIRLFDVNSS---SPQPVMSYDQHTNN---V--MAVGFQCDGNWMY-SGSEDGTV  102 (174)
Q Consensus        37 ~v~~~~~~~~~-----~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~---v--~~~~~~~~~~~l~-t~~~dg~v  102 (174)
                      .|.++.|.|-+     .+++......+.+|.+-..   ..+.+....++...   +  -++.|+|....++ -...|- -
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-S  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-S  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-e
Confidence            37889999842     4666666778999998421   12222222233211   1  2445777555433 233442 2


Q ss_pred             EEEeCCC--CeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260          103 KIWDLRA--PVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN  151 (174)
Q Consensus       103 ~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~  151 (174)
                      .+.+++.  ..+...+...+.|.|.+|.++|+.|+.+ ++.=.-++||-..+
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            3445543  3334445667889999999999886543 44445789997754

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.59  E-value=2.9  Score=34.24  Aligned_cols=95  Identities=14%  Similarity=0.235  Sum_probs=61.7

Q ss_pred             EeeCCCcEEEEECCC-Cc-eeEEeecCC----CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260           10 TASYDKTIKFWEAKS-GR-CYRTIQYPD----SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus        10 s~s~D~~v~vwd~~~-~~-~~~~~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .|-.|..|.=||.+- +. .+...+.++    ....+.+-..+|.+++++.+|.||+||- .+. .....+++-...|..
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKH  476 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhh-hhhhcccccCCceee
Confidence            466677889999763 22 222222222    2345566666788888889999999997 221 222234556678999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDL  107 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~  107 (174)
                      +..+.+|++|+..+.. .+.+-++
T Consensus       477 VdvtadGKwil~Tc~t-yLlLi~t  499 (644)
T KOG2395|consen  477 VDVTADGKWILATCKT-YLLLIDT  499 (644)
T ss_pred             EEeeccCcEEEEeccc-EEEEEEE
Confidence            9999999998877654 5555554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.58  E-value=5.9  Score=31.57  Aligned_cols=54  Identities=7%  Similarity=0.191  Sum_probs=39.4

Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQT  132 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~  132 (174)
                      +++..++.+|+++++|.-..+|.+.+.+..-..+...+..  ......+.|.-++.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            4689999999999999999999999988665554444433  34556777765544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.51  E-value=1.2  Score=23.37  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             cEEEEEEccCCC---EEEEeeCCCcEEEEeCCCC
Q 042260          121 AVNTVVLHPNQT---ELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       121 ~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~  151 (174)
                      .|.++.|+|+..   .|+-+-..|.|.++|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578999998554   5555555678999999963

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.47  E-value=6.2  Score=31.60  Aligned_cols=145  Identities=10%  Similarity=0.166  Sum_probs=80.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc-----eeEEeecCCCCeEEEEEcC-----CCceEEEecCCcEEEEEcCCCC------
Q 042260            4 PSVILATASYDKTIKFWEAKSGR-----CYRTIQYPDSQVNRLEITP-----NKHYLAAAGNPHIRLFDVNSSS------   67 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~------   67 (174)
                      .+..|+.||..|.+|||+...++     .+.+.+. ..+|..+..-+     ....++.-.-..+.+|.+....      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            45679999999999999985533     2222222 34676665432     2234444445567777763211      


Q ss_pred             --CCCeEEeecCC-CCEEEEEEee----C-CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260           68 --PQPVMSYDQHT-NNVMAVGFQC----D-GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        68 --~~~~~~~~~~~-~~v~~~~~~~----~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                        ......+.++- .....+++-+    . ..+|+-=+-||.+.+++-+...-...+..---...+++.+....++++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence              11111222211 1122222222    2 23566668899999998776443332222222345667777777888888


Q ss_pred             CCcEEEEeCC
Q 042260          140 NGNIRVWDLT  149 (174)
Q Consensus       140 d~~i~iwd~~  149 (174)
                      +..+..|...
T Consensus       195 s~~l~~Yky~  204 (418)
T PF14727_consen  195 SWTLECYKYQ  204 (418)
T ss_pred             ceeEEEecHH
Confidence            8788877764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.17  E-value=0.98  Score=40.06  Aligned_cols=126  Identities=15%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             EEEeeCCCcEEEEECCCCceeEE-----ee------cCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260            8 LATASYDKTIKFWEAKSGRCYRT-----IQ------YPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~-----~~------~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      ++..+++..|..||+++-.....     +.      .......++.|+|.=  ..++...|..|++..+........ .+
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~-s~  195 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT-SF  195 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc-cc
Confidence            44556667789999875433221     11      112234567787742  233445677787766643211111 11


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-----cccCcEEEEEEccCCCEEEE
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-----ESRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s  136 (174)
                       .-....++++|++.|+.++.|-..|++.=|...-.. ...+     ....+|.+++|..+..++++
T Consensus       196 -p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  196 -PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -CcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeEEEE
Confidence             234678999999999999999999998877644321 1111     22467999999887777664

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.99  E-value=6.8  Score=31.18  Aligned_cols=30  Identities=30%  Similarity=0.606  Sum_probs=25.2

Q ss_pred             cEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          121 AVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .|..++..+..+.+.+.+++|.|.+||+..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            389999999889999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.92  E-value=8.7  Score=32.28  Aligned_cols=70  Identities=10%  Similarity=0.088  Sum_probs=42.0

Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEE---EeCCCCeeEE------eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKI---WDLRAPVCQM------EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~i---wd~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      ...+..+.|+++|+.++... ++.|.+   -.........      .......+.++.|.+++..+ .+..++...+|-+
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            45799999999999887765 466665   2222222111      11122346888999888854 5555554455555


Q ss_pred             C
Q 042260          149 T  149 (174)
Q Consensus       149 ~  149 (174)
                      .
T Consensus       525 ~  525 (591)
T PRK13616        525 N  525 (591)
T ss_pred             e
Confidence            4

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.75  E-value=0.94  Score=35.13  Aligned_cols=82  Identities=12%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeecc---------------
Q 042260           55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYES---------------  118 (174)
Q Consensus        55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~---------------  118 (174)
                      .+...++|+.++...++.   .....+....|+|+|+.++-.. ++.|.+++....... .+...               
T Consensus        22 ~~~y~i~d~~~~~~~~l~---~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE   97 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLT---PPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE   97 (353)
T ss_dssp             EEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred             ceeEEEEecCCCceEECc---CCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence            345788999876433322   2256788889999999988875 468999987655322 22211               


Q ss_pred             --cCcEEEEEEccCCCEEEEeeCC
Q 042260          119 --RAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus       119 --~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                        -..-..+-|+|+++.|+....|
T Consensus        98 Ev~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   98 EVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             HTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEEC
Confidence              0112567899999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.73  E-value=0.4  Score=37.17  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec---------------C-
Q 042260           14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ---------------H-   77 (174)
Q Consensus        14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~-   77 (174)
                      .+.+.+||+++++...-... ...+....|+|++..++-..++.|.+.+..++... .++..+               . 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeE-EeccccceeEEcCccceeccccc
Confidence            45689999998765433332 45688899999999988888888998887654221 111111               0 


Q ss_pred             CCCEEEEEEeeCCCEEEEec
Q 042260           78 TNNVMAVGFQCDGNWMYSGS   97 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~   97 (174)
                      -..-.++-|+|++++|+...
T Consensus       100 ~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEE
T ss_pred             cccccceEECCCCCEEEEEE
Confidence            12335677888888877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.60  E-value=6.9  Score=30.58  Aligned_cols=101  Identities=9%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             CeEEEEEcCCCceEEEecCCcEEEEEcCCC-----CCCCeE-Eeec----CCCCEEEEEEeeCCCEEEEecCC-------
Q 042260           37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSS-----SPQPVM-SYDQ----HTNNVMAVGFQCDGNWMYSGSED-------   99 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~-~~~~----~~~~v~~~~~~~~~~~l~t~~~d-------   99 (174)
                      ....+++.+++ ++++....-.++.|....     +...+. .+..    +......+.+.++|++.++-+..       
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~  151 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR  151 (367)
T ss_pred             CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence            45778888888 555543332233344221     111111 1211    12336688899999876654421       


Q ss_pred             ------------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee
Q 042260          100 ------------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus       100 ------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  138 (174)
                                  |.|.-+|.........-..-...+.++|+|+++.+++-.
T Consensus       152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                        334444444333222112234467899999988776543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.54  E-value=2.6  Score=34.75  Aligned_cols=36  Identities=22%  Similarity=0.533  Sum_probs=26.9

Q ss_pred             CEEEEEEee----CCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260           80 NVMAVGFQC----DGNWMYSGSEDGTVKIWDLRAPVCQME  115 (174)
Q Consensus        80 ~v~~~~~~~----~~~~l~t~~~dg~v~iwd~~~~~~~~~  115 (174)
                      .....+...    +..++++-+.|+.+|+||+.+.+++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            345555555    678999999999999999999888443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.20  E-value=6.7  Score=29.79  Aligned_cols=115  Identities=10%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             CCeEEEEEcCCCceEEEecCCcEEEEEcC-CCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee--
Q 042260           36 SQVNRLEITPNKHYLAAAGNPHIRLFDVN-SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--  112 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--  112 (174)
                      ..+.++.|+|+...+.+..+....+..+. .++......+.+ -.....+.|..++++.++--.++.+.++.+.....  
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            34889999998777666655554444443 333322233333 34566778888888888888888888877654311  


Q ss_pred             -----EEeec---c-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          113 -----QMEYE---S-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       113 -----~~~~~---~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                           ...++   . +...-.+++.|.+..|+.+-+-.-++|+.++-.
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence                 11111   1 345678999999999998888778888877743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.06  E-value=8.1  Score=30.52  Aligned_cols=110  Identities=17%  Similarity=0.288  Sum_probs=64.4

Q ss_pred             EEEEEcCCCceEEEe----cC--CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecC-----------CCc
Q 042260           39 NRLEITPNKHYLAAA----GN--PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-----------DGT  101 (174)
Q Consensus        39 ~~~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-----------dg~  101 (174)
                      ....++|++.+++-+    ++  ..++++|+++++...- .+.  ......+.|.++++.|+-...           ...
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            357889998876643    22  2489999988732111 111  112223899998776544432           224


Q ss_pred             EEEEeCCCCeeE--Eeec--ccCc-EEEEEEccCCCEEEEee-C--C-CcEEEEeCCCC
Q 042260          102 VKIWDLRAPVCQ--MEYE--SRAA-VNTVVLHPNQTELISGD-Q--N-GNIRVWDLTAN  151 (174)
Q Consensus       102 v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~~~~~~l~s~~-~--d-~~i~iwd~~~~  151 (174)
                      |..|++.++...  ..++  .... ...+..+++++.|+..+ .  + ..+.+-|....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            788888765322  2232  2333 67888999999876432 2  2 35888888774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.54  E-value=4.1  Score=30.04  Aligned_cols=89  Identities=21%  Similarity=0.345  Sum_probs=51.5

Q ss_pred             EEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecC-C--CcEEEEeCCC--CeeEEe-----ecccCcEEEEEE
Q 042260           58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-D--GTVKIWDLRA--PVCQME-----YESRAAVNTVVL  127 (174)
Q Consensus        58 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--g~v~iwd~~~--~~~~~~-----~~~~~~v~~~~~  127 (174)
                      --+||+.+++..++..  ....-+.+-.+-++|+++.+|+. |  ..+++++...  ..+...     ...+.--.+...
T Consensus        48 s~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            4689998876544322  12222334457789999999876 2  3588887643  111111     122223345667


Q ss_pred             ccCCCEEEEeeCCC-cEEEEeC
Q 042260          128 HPNQTELISGDQNG-NIRVWDL  148 (174)
Q Consensus       128 ~~~~~~l~s~~~d~-~i~iwd~  148 (174)
                      .|+|+.++.|+.+. +..+|.-
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~  147 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPP  147 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCC
Confidence            78999988887763 3455554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.34  E-value=8.2  Score=29.56  Aligned_cols=142  Identities=13%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             EEEEECCCCceeEEeec--C---CCCeEEEEEcCCCceEEEecC----------CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260           17 IKFWEAKSGRCYRTIQY--P---DSQVNRLEITPNKHYLAAAGN----------PHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus        17 v~vwd~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+++.+++..+..+..  .   ....+.....|+|.+.++.-.          ..-++|-+.... ........+...-
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~~l~~~~~~~~  165 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVVRLLDDDLTIP  165 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-CEEEeecCcEEec
Confidence            56666655544222221  1   234567788888887665322          112455554211 1122233445667


Q ss_pred             EEEEEeeCCCEEEEe-cCCCcEEEEeCCC--C----ee-EEee-cccCcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCC
Q 042260           82 MAVGFQCDGNWMYSG-SEDGTVKIWDLRA--P----VC-QMEY-ESRAAVNTVVLHPNQTELISGDQNG-NIRVWDLTAN  151 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~-~~dg~v~iwd~~~--~----~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~  151 (174)
                      ..++|+|+++.++.+ +..+.+.-+++..  .    .. ...+ ..+...-.++..-++++-+++..+| .|..|+.. +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            789999999766555 4457888887752  1    00 1111 1234455667777777765555554 89999998 7


Q ss_pred             cceeecCcc
Q 042260          152 SCSCELGLQ  160 (174)
Q Consensus       152 ~~~~~~~~~  160 (174)
                      +...+..+|
T Consensus       245 ~l~~~i~lP  253 (307)
T COG3386         245 KLLGEIKLP  253 (307)
T ss_pred             cEEEEEECC
Confidence            777776665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.96  E-value=7.6  Score=28.68  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             EEEEEcCCCceEEEecC----CcEEEEEcCCCCCCCe-EEee---cCCCCEEEEEEeeCCCEEEEecCCC-cEEEEeCCC
Q 042260           39 NRLEITPNKHYLAAAGN----PHIRLFDVNSSSPQPV-MSYD---QHTNNVMAVGFQCDGNWMYSGSEDG-TVKIWDLRA  109 (174)
Q Consensus        39 ~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~  109 (174)
                      .+-.+-++|.++.++++    ..+|+++.-.....+. ....   ....--.....-++|+.|+.|+.+. ...+|.-+.
T Consensus        70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~  149 (243)
T PF07250_consen   70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG  149 (243)
T ss_pred             cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence            33445567787776653    3478877543110111 0000   0111112223345899888877764 456665422


Q ss_pred             C--eeE-Eeecc----c---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccc
Q 042260          110 P--VCQ-MEYES----R---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYG  162 (174)
Q Consensus       110 ~--~~~-~~~~~----~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  162 (174)
                      .  ... ..+..    .   .----+...|+|+.++.+..+  -.|||..+...+.+++ ++..
T Consensus       150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCCC
Confidence            1  111 11110    0   112255677999988887654  5778999887766663 3443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.32  E-value=0.053  Score=43.42  Aligned_cols=128  Identities=15%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE--EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL--AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      ++.+..+-.+..||-. |+....... ......++|..++..+  .+-..+.+.+||+.+...+.+ .+.+ +..-.=+.
T Consensus        49 lavaca~tiv~~YD~a-gq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-E~gg-~~s~sll~  124 (615)
T KOG2247|consen   49 LAVACANTIVIYYDKA-GQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-ESGG-TSSKSLLA  124 (615)
T ss_pred             eehhhhhhHHHhhhhh-cceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-hccC-cchHHHHh
Confidence            6667777778888743 344333332 2346677777766543  334578899999976532222 1111 12222267


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCC
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      |++.+..++-+-..|.+.|++.+..+...... +..++.++++.+.+. ++.++.|
T Consensus       125 wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd  179 (615)
T KOG2247|consen  125 WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD  179 (615)
T ss_pred             hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence            88888888888889999999988765444444 556788888887654 4444444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.71  E-value=1.2  Score=38.73  Aligned_cols=137  Identities=18%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             CcEEEEECC--CCceeEEe-----ecCCCCeEEEEEcC---CCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE-
Q 042260           15 KTIKFWEAK--SGRCYRTI-----QYPDSQVNRLEITP---NKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM-   82 (174)
Q Consensus        15 ~~v~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~-   82 (174)
                      |.+.|||+.  .|+....+     ......+.-+.|.|   +...+..+ .++.+++..+.......+   ..|...+. 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~---rsHs~~~~d  229 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLF---RSHSQRVTD  229 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHH---HhcCCCccc
Confidence            567888854  34432221     11223334445544   44445444 355677665543321111   12332222 


Q ss_pred             ---------EE-EEeeCCCEEEEecCCCcEEEEeCC-----CCeeEEeecc--cCcEEEEEEccCCC---------EEEE
Q 042260           83 ---------AV-GFQCDGNWMYSGSEDGTVKIWDLR-----APVCQMEYES--RAAVNTVVLHPNQT---------ELIS  136 (174)
Q Consensus        83 ---------~~-~~~~~~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~--~~~v~~~~~~~~~~---------~l~s  136 (174)
                               .+ ..++||+.|++.+.||.++.|.+.     ...|.+.++.  +.+-.|..|+.+.+         ++++
T Consensus       230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence                     22 268899999999999999999863     3344444432  13333333554332         3455


Q ss_pred             ee-CCCcEEEEeCCCCcce
Q 042260          137 GD-QNGNIRVWDLTANSCS  154 (174)
Q Consensus       137 ~~-~d~~i~iwd~~~~~~~  154 (174)
                      ++ .+..+++|.-..=.|.
T Consensus       310 ttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cccCCcceeEeeccchhhh
Confidence            54 4667999987776666

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.53  E-value=18  Score=31.43  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE-------------EEEEcc--CCCEEEEeeC----------CCcEE
Q 042260           90 GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN-------------TVVLHP--NQTELISGDQ----------NGNIR  144 (174)
Q Consensus        90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~s~~~----------d~~i~  144 (174)
                      +..++.++.|+.+.-.|.++.+....+.....+.             .+.-.|  .+..|+.|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            4578888889999999999887776554332221             011111  2345555543          68899


Q ss_pred             EEeCCCCcceeecC
Q 042260          145 VWDLTANSCSCELG  158 (174)
Q Consensus       145 iwd~~~~~~~~~~~  158 (174)
                      -+|.++++..+++.
T Consensus       340 A~Da~TGkl~W~~~  353 (764)
T TIGR03074       340 AFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCcEeeEEe
Confidence            99999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.48  E-value=13  Score=29.60  Aligned_cols=150  Identities=10%  Similarity=0.153  Sum_probs=78.6

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecC--------CCCeEEEEEc-----CCC----ceEEEecCCcEEEEEcCC-CC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYP--------DSQVNRLEIT-----PNK----HYLAAAGNPHIRLFDVNS-SS   67 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--------~~~v~~~~~~-----~~~----~~~~~~~d~~i~i~d~~~-~~   67 (174)
                      .+++.|..+|++.|-|++....+..-...        ...++.+.|.     .++    .++++...|.+.+|.+.. ..
T Consensus        98 GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~  177 (395)
T PF08596_consen   98 GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN  177 (395)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG
T ss_pred             cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC
Confidence            37889999999999999877766553321        2346667665     222    245555678888887642 11


Q ss_pred             CCCeEE----eecCCCCEEEEE-EeeC---------------------CCEEEEecCCCcEEEEeCCCCeeEEe-ecccC
Q 042260           68 PQPVMS----YDQHTNNVMAVG-FQCD---------------------GNWMYSGSEDGTVKIWDLRAPVCQME-YESRA  120 (174)
Q Consensus        68 ~~~~~~----~~~~~~~v~~~~-~~~~---------------------~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~  120 (174)
                      -.....    ...+.+++..+. ++.+                     ..+++. ..+..+|++...+.+.... +....
T Consensus       178 g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~  256 (395)
T PF08596_consen  178 GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPF  256 (395)
T ss_dssp             G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-E
T ss_pred             CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccceeecccc
Confidence            111111    113445666555 3221                     113333 3456899998876655433 32223


Q ss_pred             cEEEEEEc-----cCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          121 AVNTVVLH-----PNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       121 ~v~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .+..+.+.     ..+..|++-..+|.|+++.+-.=+...+
T Consensus       257 ~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~  297 (395)
T PF08596_consen  257 LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS  297 (395)
T ss_dssp             EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred             ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence            34444553     2456677888999999999987554444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.43  E-value=17  Score=31.19  Aligned_cols=63  Identities=10%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             eCCCEEEEecCCCcEEEEeCCC-------C-------------eeEEeecccCcEEEEEEc--cCCCEEEEeeCCCcEEE
Q 042260           88 CDGNWMYSGSEDGTVKIWDLRA-------P-------------VCQMEYESRAAVNTVVLH--PNQTELISGDQNGNIRV  145 (174)
Q Consensus        88 ~~~~~l~t~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~i  145 (174)
                      .+...|+.+..||.|.+|.++.       .             ++-..+..+..+..++++  ...+.+|+++....|.+
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            3556789999999999997521       0             011223345678999998  77777777777777777


Q ss_pred             EeCCC
Q 042260          146 WDLTA  150 (174)
Q Consensus       146 wd~~~  150 (174)
                      +-+..
T Consensus       192 Faf~l  196 (717)
T PF08728_consen  192 FAFAL  196 (717)
T ss_pred             EEEec
Confidence            65553

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN02153 epithiospecifier protein

Probab=87.11  E-value=12  Score=28.82  Aligned_cols=54  Identities=11%  Similarity=-0.016  Sum_probs=28.5

Q ss_pred             CcEEEEeCCCCeeEEeec---cc--CcEEEEEEccCCCEEEEeeCC--------------CcEEEEeCCCCcce
Q 042260          100 GTVKIWDLRAPVCQMEYE---SR--AAVNTVVLHPNQTELISGDQN--------------GNIRVWDLTANSCS  154 (174)
Q Consensus       100 g~v~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~l~s~~~d--------------~~i~iwd~~~~~~~  154 (174)
                      ..+.+||+.+........   .+  ....++ ...++..++.|+..              ..+..+|.++....
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence            358888987655432211   01  111222 22355666777742              15778888776544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.06  E-value=2.6  Score=21.16  Aligned_cols=39  Identities=18%  Similarity=0.122  Sum_probs=24.2

Q ss_pred             CCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEE
Q 042260           89 DGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL  127 (174)
Q Consensus        89 ~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~  127 (174)
                      +++++ ++...++.|.++|..+......+........++|
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            45544 4455678999999988776665554433344443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=86.78  E-value=15  Score=29.77  Aligned_cols=145  Identities=7%  Similarity=-0.003  Sum_probs=69.4

Q ss_pred             cEEEEEeeCCC-----cEEEEECCCCceeEEeec---CCCCe-EEEEEcCCCceE-EEecC-----CcEEEEEcCCCCCC
Q 042260            5 SVILATASYDK-----TIKFWEAKSGRCYRTIQY---PDSQV-NRLEITPNKHYL-AAAGN-----PHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~---~~~~v-~~~~~~~~~~~~-~~~~d-----~~i~i~d~~~~~~~   69 (174)
                      +.+.+-|+.++     .+..||+.+.+-...-..   +.... ..+... .++++ .++.+     ..+..||+.+.++.
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            34566676653     477888876543221111   11111 122222 33443 33322     23567787665443


Q ss_pred             CeEEe---ecCCCCEEEEEEeeCCCEEEEecCC----CcEEEEeCCCCeeEEeecc------cCcEEEEEEccCCCEEEE
Q 042260           70 PVMSY---DQHTNNVMAVGFQCDGNWMYSGSED----GTVKIWDLRAPVCQMEYES------RAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        70 ~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s  136 (174)
                      .+...   ...+......  .-+++.++.++.+    ..+.++|+.+.........      +....++.  .++..++.
T Consensus       308 ~~~~~~~~~~~R~~~~~~--~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~  383 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLE--VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIF  383 (470)
T ss_pred             eCCCCCCCCCCCCCcEEE--EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEE
Confidence            22110   1111222122  2356666666654    4588999887654332111      11122222  25666777


Q ss_pred             eeCC--------------CcEEEEeCCCCcce
Q 042260          137 GDQN--------------GNIRVWDLTANSCS  154 (174)
Q Consensus       137 ~~~d--------------~~i~iwd~~~~~~~  154 (174)
                      |+.+              ..+.++|+.+.+..
T Consensus       384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             CCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            7753              24788888877644

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=86.77  E-value=14  Score=29.16  Aligned_cols=143  Identities=15%  Similarity=0.181  Sum_probs=93.3

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEE---eecCCCCEEEEEEe
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMS---YDQHTNNVMAVGFQ   87 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~   87 (174)
                      .++++-+.|..+++...+......+ ..+++.|++..+...  .++.+.+.|........ ..   ...-...-..+.+.
T Consensus       138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~  215 (381)
T COG3391         138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVD  215 (381)
T ss_pred             CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEEC
Confidence            4788888888888888776544444 889999998855443  47778888865543221 00   01112334567788


Q ss_pred             eCCCEEEEecCC---CcEEEEeCCCCeeEEe-ecccC-cEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeec
Q 042260           88 CDGNWMYSGSED---GTVKIWDLRAPVCQME-YESRA-AVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        88 ~~~~~l~t~~~d---g~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~  157 (174)
                      ++|++++.....   +.+...|......... ..... ....+..+|++..+.+.. ..+.+.+-|-.+....-..
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence            888865554333   5888888887665543 22222 456788999999887763 4478888888887665443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.71  E-value=14  Score=29.19  Aligned_cols=146  Identities=12%  Similarity=0.173  Sum_probs=75.4

Q ss_pred             EEEEEeeCCCc----EEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecC-----------CcEEEEEcCCCCCC
Q 042260            6 VILATASYDKT----IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGN-----------PHIRLFDVNSSSPQ   69 (174)
Q Consensus         6 ~~l~s~s~D~~----v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d-----------~~i~i~d~~~~~~~   69 (174)
                      .++++-+..|.    ++++|+++|+.+...-.. .....+.|.+++..+ .+..+           ..++.|.+.+....
T Consensus       137 ~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~  215 (414)
T PF02897_consen  137 RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE  215 (414)
T ss_dssp             EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG
T ss_pred             EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh
Confidence            34444444444    999999999776533111 112338999986544 44322           12677777665434


Q ss_pred             CeEEeecCCCC--EEEEEEeeCCCEEEEec-C--C-CcEEEEeCCCC-----eeEEeecccCcEEEEEEccCCCEEEEe-
Q 042260           70 PVMSYDQHTNN--VMAVGFQCDGNWMYSGS-E--D-GTVKIWDLRAP-----VCQMEYESRAAVNTVVLHPNQTELISG-  137 (174)
Q Consensus        70 ~~~~~~~~~~~--v~~~~~~~~~~~l~t~~-~--d-g~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~-  137 (174)
                      -...+......  ...+..++++++++..+ .  + ..+.+-|+...     ...........+....-+.++.+.+.. 
T Consensus       216 d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn  295 (414)
T PF02897_consen  216 DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN  295 (414)
T ss_dssp             -EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-
T ss_pred             CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC
Confidence            33445444333  56778889999866432 2  2 45788888763     222222222333332323344443332 


Q ss_pred             --eCCCcEEEEeCCCCc
Q 042260          138 --DQNGNIRVWDLTANS  152 (174)
Q Consensus       138 --~~d~~i~iwd~~~~~  152 (174)
                        ..++.|.-.++....
T Consensus       296 ~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  296 DDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             TT-TT-EEEEEETTSTS
T ss_pred             CCCCCcEEEEecccccc
Confidence              334567777777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.45  E-value=12  Score=28.26  Aligned_cols=94  Identities=13%  Similarity=0.235  Sum_probs=58.6

Q ss_pred             CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec------CCCcEEEEeCCCCeeEEeec-----ccCcEE
Q 042260           55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS------EDGTVKIWDLRAPVCQMEYE-----SRAAVN  123 (174)
Q Consensus        55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~------~dg~v~iwd~~~~~~~~~~~-----~~~~v~  123 (174)
                      ...+++||....++.....  .-.+.|..+.|..+.+.++.|.      ....+..||+........-.     -+.+|.
T Consensus        15 C~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            3468999998776654432  3457899999987777777764      46678999998765422112     135677


Q ss_pred             EEEEcc-CC-CEEEEee-CCC--cEEEEeCCC
Q 042260          124 TVVLHP-NQ-TELISGD-QNG--NIRVWDLTA  150 (174)
Q Consensus       124 ~~~~~~-~~-~~l~s~~-~d~--~i~iwd~~~  150 (174)
                      .+.+.. +. +..++|. .++  .|..||=..
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            777743 23 3444443 333  466666543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.50  E-value=5  Score=24.65  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260           96 GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        96 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      +..+|++.-||..+.+.......=.-.+.+++++++.+|+.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence            456788999999988765544444567999999999987755

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02153 epithiospecifier protein

Probab=85.03  E-value=15  Score=28.19  Aligned_cols=96  Identities=7%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             cEEEEEcCCCCCCCeEEeec---CCCCEEEEEEeeCCCEEEEecCC-----------CcEEEEeCCCCeeEEeecc----
Q 042260           57 HIRLFDVNSSSPQPVMSYDQ---HTNNVMAVGFQCDGNWMYSGSED-----------GTVKIWDLRAPVCQMEYES----  118 (174)
Q Consensus        57 ~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~----  118 (174)
                      .+.+||..+.++..+..+..   ........+...+++..+.|+.+           ..+.+||.++.........    
T Consensus       102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~  181 (341)
T PLN02153        102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF  181 (341)
T ss_pred             cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence            46788887765543322110   11111222223456677777653           2477788876544321111    


Q ss_pred             --cCcEEEEEEccCCCEEEEeeCC-------------CcEEEEeCCCCcce
Q 042260          119 --RAAVNTVVLHPNQTELISGDQN-------------GNIRVWDLTANSCS  154 (174)
Q Consensus       119 --~~~v~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~  154 (174)
                        +.......+  ++...+.|+.+             ..+.+||+.+.+..
T Consensus       182 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        182 EKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             CCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence              111122222  45554544421             35888998876544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=84.67  E-value=14  Score=27.33  Aligned_cols=110  Identities=14%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe-CCCCee-
Q 042260           37 QVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVC-  112 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd-~~~~~~-  112 (174)
                      .+...++++++..++...  ++.-.+|-...+...... .  ....+..-.|.+++...+....+...+++. ...... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            577889999887665533  444444444433222111 1  223677778888877766666666666663 222211 


Q ss_pred             EEee--ccc-CcEEEEEEccCCCEEEEee---CCCcEEEEeCC
Q 042260          113 QMEY--ESR-AAVNTVVLHPNQTELISGD---QNGNIRVWDLT  149 (174)
Q Consensus       113 ~~~~--~~~-~~v~~~~~~~~~~~l~s~~---~d~~i~iwd~~  149 (174)
                      ....  ... ..|..+.++|++..++...   .++.|.+=-+.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            1111  111 2899999999999877544   34667776655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.65  E-value=14  Score=27.36  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=56.8

Q ss_pred             EEEEEcCCCceEEE--ecCCcEEEEE--cCCCCC---CCeEEeec----CCCCEEEEEEeeCCCEEEEecCCCcEEEEeC
Q 042260           39 NRLEITPNKHYLAA--AGNPHIRLFD--VNSSSP---QPVMSYDQ----HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL  107 (174)
Q Consensus        39 ~~~~~~~~~~~~~~--~~d~~i~i~d--~~~~~~---~~~~~~~~----~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~  107 (174)
                      ++++|+.+.+.+..  +.+..+.-||  ..++..   +.+..+..    ....--.+++.-.|++.+++-+.++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            46778765554433  3455676677  444321   11222211    1111223444557899999999999999999


Q ss_pred             CCCeeEEeecc-cCcEEEEEEcc
Q 042260          108 RAPVCQMEYES-RAAVNTVVLHP  129 (174)
Q Consensus       108 ~~~~~~~~~~~-~~~v~~~~~~~  129 (174)
                      .+++...++.. ...|.+++|--
T Consensus       241 ~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecC
Confidence            99998887764 46789999953

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.11  E-value=11  Score=27.25  Aligned_cols=41  Identities=15%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             cCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCCEEEEe
Q 042260           97 SEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        97 ~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      ...+.|.+|++....  ...+|..-+.|..++++..|.+|++-
T Consensus        35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence            566789999998433  34566667889999999999999984

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.93  E-value=4.6  Score=33.14  Aligned_cols=63  Identities=19%  Similarity=0.242  Sum_probs=41.5

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcC
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN   64 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~   64 (174)
                      +-.+.++|.||.-|.||+||.-.-...-.+..-...|-.+..+.+|+.+.+.-...+-+-|++
T Consensus       570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            345668999999999999995432222223333456888888888887655444556666653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.38  E-value=4.7  Score=20.17  Aligned_cols=30  Identities=17%  Similarity=0.204  Sum_probs=23.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYP   34 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~   34 (174)
                      +.++++...+++|.++|..+++.+..+...
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            456677777899999999998888777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>smart00564 PQQ beta-propeller repeat

Probab=82.14  E-value=4  Score=19.27  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=19.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRT   30 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~   30 (174)
                      .+..++.++.+..+|.++|+.+-.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577788899999999999887643

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.07  E-value=14  Score=33.37  Aligned_cols=145  Identities=10%  Similarity=0.092  Sum_probs=86.0

Q ss_pred             EEEEeeCCCcEEEEECCC-------Cc---------eeEEeecC-CCCeEEEEEcCCCceEEE---ecCCcEEEEEcCCC
Q 042260            7 ILATASYDKTIKFWEAKS-------GR---------CYRTIQYP-DSQVNRLEITPNKHYLAA---AGNPHIRLFDVNSS   66 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~-------~~---------~~~~~~~~-~~~v~~~~~~~~~~~~~~---~~d~~i~i~d~~~~   66 (174)
                      +++.+++.+.+.++-..+       +.         +...++.+ +.++..+...++..+.+.   ..+..|..||++.-
T Consensus        55 l~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~f  134 (1405)
T KOG3630|consen   55 LFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEF  134 (1405)
T ss_pred             eEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhh
Confidence            566777777777774321       10         11222222 334566666666554322   23335789998643


Q ss_pred             CCCC---eEEeecC------CCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeE-EeecccCcEEEEEEccCCCEEE
Q 042260           67 SPQP---VMSYDQH------TNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        67 ~~~~---~~~~~~~------~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~  135 (174)
                      ....   ...+..|      .....++.|+|. ....+.+..|+.|++..+...... ..+.......+++|+|-|..++
T Consensus       135 s~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~  214 (1405)
T KOG3630|consen  135 SESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLF  214 (1405)
T ss_pred             hhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceee
Confidence            2111   1111112      234556667763 334566788999998877653322 2234556789999999999999


Q ss_pred             EeeCCCcEEEEeCCCC
Q 042260          136 SGDQNGNIRVWDLTAN  151 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~  151 (174)
                      .|-.+|++.-|...-.
T Consensus       215 iG~nnGt~vQy~P~le  230 (1405)
T KOG3630|consen  215 IGRNNGTEVQYEPSLE  230 (1405)
T ss_pred             EecCCCeEEEeecccc
Confidence            9999999988876643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.92  E-value=21  Score=27.30  Aligned_cols=142  Identities=10%  Similarity=0.119  Sum_probs=77.8

Q ss_pred             CcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEE--------------------EEcCCCCCCCeEE
Q 042260           15 KTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL--------------------FDVNSSSPQPVMS   73 (174)
Q Consensus        15 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i--------------------~d~~~~~~~~~~~   73 (174)
                      |.|-|||.+.+ +.+.++..+.-.-..+.+.+++..++... +.|+.                    .|..++......+
T Consensus       140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             ceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            55888887643 34555555544456777888888777652 22332                    2323333222222


Q ss_pred             ee--cCCCCEEEEEEeeCCCEEEEecCCCcE-----EEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEEee
Q 042260           74 YD--QHTNNVMAVGFQCDGNWMYSGSEDGTV-----KIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        74 ~~--~~~~~v~~~~~~~~~~~l~t~~~dg~v-----~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      +.  .+...+..++..++|+..+.+...|.-     .+=-.+..+....+.        ...-|-+++.+.....++..+
T Consensus       219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS  298 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS  298 (366)
T ss_pred             CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence            22  344567777777777766655443311     000001111111111        123477888887777776555


Q ss_pred             C-CCcEEEEeCCCCcceeec
Q 042260          139 Q-NGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       139 ~-d~~i~iwd~~~~~~~~~~  157 (174)
                      - .+..-+||..++..+.+-
T Consensus       299 P~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         299 PRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             CCCCeEEEEEcCCCcEEecc
Confidence            4 456789999999887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-04
2h9l_A	329	Wdr5delta23 Length = 329		1e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-09
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-08
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-05
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		8e-05
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		8e-05
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		9e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-04
3i2n_A	357	Crystal Structure Of Wd40 Repeats Protein Wdr92 Len		5e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-04

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           HT  V +V F  +G W+ S S D  +KIW       +      +  ++ V    +   L+
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 136 SGDQNGNIRVWDLTANSC 153
           S   +  +++WD+++  C
Sbjct: 85  SASDDKTLKIWDVSSGKC 102

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           HT  V +V F  +G W+ S S D  +KIW       +      +  ++ V    +   L+
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 136 SGDQNGNIRVWDLTANSC 153
           S   +  +++WD+++  C
Sbjct: 85  SASDDKTLKIWDVSSGKC 102

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 133 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           HT  V +V F  +G W+ S S D  +KIW       +      +  ++ V    +   L+
Sbjct: 18  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 136 SGDQNGNIRVWDLTANSC 153
           S   +  +++WD+++  C
Sbjct: 78  SASDDKTLKIWDVSSGKC 95

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 142 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 9   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 69  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 104

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 137 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 4   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 136 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           HT  V +V F  +G W+ S S D  +KIW       +      +  ++ V    +   L+
Sbjct: 21  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 136 SGDQNGNIRVWDLTANSC 153
           S   +  +++WD+++  C
Sbjct: 81  SASDDKTLKIWDVSSGKC 98

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 154 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 137 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 4   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 138 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 5   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 65  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 100

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 161 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 28  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 87
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 88  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 123

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +     + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 140 KTG--MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   + ++++WD +   C
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 7   SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +   + + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 159 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 26  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 85
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 121

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
           S +L +AS DKT+K W+  SG+C +T++   + V      P  + + +   +  +R++DV
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
            +     + +   H++ V AV F  DG+ + S S DG  +IWD  +  C   +  +    
Sbjct: 140 KTG--MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           V+ V   PN   +++   +  +++WD +   C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66  SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           S P PV        +   HT  V +V F  +G W+ S S D  +KIW       +     
Sbjct: 7   SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
            +  ++ V    +   L+S   +  +++WD+++  C
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNS 65
           +LA+ S D TIK W+ +   C RT+   D  V+ + I PN  H ++A+ +  I++++V +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNT 124
                V ++  H   V  V    DG  + S S D TV++W +    C+ E  E R  V  
Sbjct: 224 G--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 125 VVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCEL-GLQYGL 163
           +   P  +                     L+SG ++  I++WD++   C   L G    +
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 164 RTFLFY 169
           R  LF+
Sbjct: 342 RGVLFH 347

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
           +A+AS DKT+K W  ++G+  +T+    S V  +  +P+   +A+A +   ++L++ N  
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 211
Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
             Q + +   H+++V  V F  DG  + S S+D TVK+W+    + Q      ++VN V 
Sbjct: 212 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVA 269
Query: 127 LHPNQTELISGDQNGNIRVWD 147
             P+   + S   +  +++W+
Sbjct: 270 FRPDGQTIASASDDKTVKLWN 290

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 75  DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL 134
           + H+++V  V F  DG  + S S+D TVK+W+    + Q      ++V  V   P+   +
Sbjct: 13  EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 72
Query: 135 ISGDQNGNIRVWD 147
            S   +  +++W+
Sbjct: 73  ASASDDKTVKLWN 85

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
           I+ + S D+T+K W A++G C  T+ Y  +   R      K  ++ + +  +R++D+ + 
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
               V+    H   V  V  Q DG  + SG+ D  VK+WD     C    +         
Sbjct: 230 QCLHVLM--GHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYS 284
Query: 127 LHPNQTELISGDQNGNIRVWDLTANSC 153
           L  +   ++SG  + +IRVWD+   +C
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNC 311

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNS 65
           I A++S D  I+ W+ ++G+  ++I         L  +P+  YLA   +   + +F V S
Sbjct: 94  IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
              +   S D     ++++ +  DG ++ SG+ DG + I+D+         E  A  + +
Sbjct: 154 GKKE--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211
Query: 125 VVLHPNQTELISGDQNGNIRVWDL 148
           +   P+   L++   +G I+++D+
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAG--NPHIRLFDVN 64
           +AT S DK +K W++ +G+   T      QVN    T  + H L A G  +  ++L+D+N
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 65  SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
               +  M    HTN+V    F  D   + S S DGT+++WD+R+
Sbjct: 732 QKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAG--NPHIRLFDVN 64
           +AT S DK +K W++ +G+   T      QVN    T  + H L A G  +  ++L+D+N
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 65  SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
               +  M    HTN+V    F  D   + S S DGT+++WD+R+
Sbjct: 739 QKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 41  LEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN----------------VMAV 84
           ++ + +  YLA   N   +++ V+  S    +S D   N                 + +V
Sbjct: 70  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 85  GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNI 143
            F  DG ++ +G+ED  ++IWD+      M  +     + ++   P+  +L+SG  +  +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 144 RVWDLTANSCSCELGLQYGLRT 165
           R+WDL    CS  L ++ G+ T
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTT 211

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTI----QYPDSQVNRLEITPNK---HYLAAAGNPHIRL 60
           + +AS D+TIK W    G C  TI    +     V+ +  +PN      ++A+ +  +++
Sbjct: 487 IVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           +++++   +  ++   HT  V  V    DG+   SG +DG V +WDL         E+ +
Sbjct: 546 WNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152
            ++ +   PN+  L +  ++G I++WDL + S
Sbjct: 604 VIHALCFSPNRYWLCAATEHG-IKIWDLESKS 634

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 7   ILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
           ++ T S D++I  W+  S       R +    + VN ++   +K+ ++A+G+  I+++  
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVW-- 281
Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN 123
           N+S+ + V + + H   +  + ++     + SGS D T+++WD+    C    E    + 
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTA 150
             +   N+  ++SG  +G I+VWDL A
Sbjct: 340 RCIRFDNK-RIVSGAYDGKIKVWDLVA 365

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLAAAGNPHIR 59
           ++Q +    ++S+DKT++ W+ ++G  Y+      S+V  +  +P N+  L+A     I+
Sbjct: 84  LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGF----------QCDGNWMYSGSEDGTVKIWDLRA 109
           L+++           + H++ V  V +          Q    +  S   DG +K+W+   
Sbjct: 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203
Query: 110 PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166
            +        + VN + + PN   + +G ++  + +WD+        L L Y  R F
Sbjct: 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI--------LNLTYPQREF 252

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH---YLAAAGNPHIRLFDVN 64
           + TAS D T   W+ +SG+  ++     + V  L++ P++    +++   +    ++D+ 
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 65  SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-- 122
           S   Q V +++ H ++V +V +   G+   SGS+D T +++DLRA      Y   + +  
Sbjct: 229 SG--QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 123 -NTVVLHPNQTELISGDQNGNIRVWDLTANS 152
            ++V    +   L +G  +  I VWD+   S
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
           +A  + +  + + D + K W+ + G C +T    +S +N +   PN +  A  + +   R
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
           LFD+ +       S+D     + +V F   G  + +G +D    +WD L+A    +    
Sbjct: 263 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V+ + +  +   + +G  +  +++W+
Sbjct: 323 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
           +A  + +  + + D + K W+ + G C +T    +S +N +   PN +  A  + +   R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
           LFD+ +       S+D     + +V F   G  + +G +D    +WD L+A    +    
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V+ + +  +   + +G  +  +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
           +A  + +  + + D + K W+ + G C +T    +S +N +   PN +  A  + +   R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
           LFD+ +       S+D     + +V F   G  + +G +D    +WD L+A    +    
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V+ + +  +   + +G  +  +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
           +A  + +  + + D + K W+ + G C +T    +S +N +   PN +  A  + +   R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
           LFD+ +       S+D     + +V F   G  + +G +D    +WD L+A    +    
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V+ + +  +   + +G  +  +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
           +A  + +  + + D + K W+ + G C +T    +S +N +   PN +  A  + +   R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60  LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
           LFD+ +       S+D     + +V F   G  + +G +D    +WD L+A    +    
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
              V+ + +  +   + +G  +  +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 4   PSVILATASYDKTIKFW-----EAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPH 57
           P +IL+ AS DKTI  W     E   G   R ++     V+ + I+ +  + L+ + +  
Sbjct: 51  PDMILS-ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 58  IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--ME 115
           +RL+D+ + +      +  HT +V++V F  D   + SGS D T+K+W+    VC+  ++
Sbjct: 110 LRLWDLTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQ 166
Query: 116 YESRAA-VNTVVLHPNQTE--LISGDQNGNIRVWDL 148
            ES +  V+ V   PN +   ++S   +  ++VW+L
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 4   PSVILATASYDKTIKFW-----EAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPH 57
           P +IL+ AS DKTI  W     E   G   R ++     V+ + I+ +  + L+ + +  
Sbjct: 28  PDMILS-ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 58  IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--ME 115
           +RL+D+ + +      +  HT +V++V F  D   + SGS D T+K+W+    VC+  ++
Sbjct: 87  LRLWDLTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQ 143
Query: 116 YESRAA-VNTVVLHPNQTE--LISGDQNGNIRVWDL 148
            ES +  V+ V   PN +   ++S   +  ++VW+L
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
           + + ++ + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56  PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
             ++ +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A      
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
             ++  V ++   PN+  L +    G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
           + + ++ + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56  PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
             ++ +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A      
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
             ++  V ++   PN+  L +    G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
           + + ++ + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56  PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
             ++ +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A      
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
             ++  V ++   PN+  L +    G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
           + + ++ + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56  PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
             ++ +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A      
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
             ++  V ++   PN+  L +    G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
           + + ++ + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +
Sbjct: 111 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 56  PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
             ++ +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A      
Sbjct: 170 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
             ++  V ++   PN+  L +    G I+V+ L
Sbjct: 228 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 259

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 111 KKASMIISGSRDKTIKVWTIKGQCLATLLG 140

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGNPHIRL 60
           + + S DKTIK W  K G+C  T+   +  V+++ + PN+         ++A  +  ++ 
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           +++N    Q    +  H +N+  +    DG  + S  +DG + +W+L A        ++ 
Sbjct: 181 WNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDL 148
            V ++   PN+  L +    G I+V+ L
Sbjct: 239 EVFSLAFSPNRYWLAAATATG-IKVFSL 265

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70  PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
           PV S+  H++ V       DG +  S S D T+++WD+      Q     ++ V +V + 
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
              + +ISG ++  I+VW +     +  LG
Sbjct: 117 KKASXIISGSRDKTIKVWTIKGQCLATLLG 146

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTI--QYPDSQ-VNRLEITPNK----HYLAAAGNPHIRL 60
           L T S D+T   W+  +G+       ++P     + L ++ N      +++ + +  +RL
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 61  FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
           +D+  +S + V +Y  H  ++ +V F  DG    +GS+DGT +++D+R    Q++  +R 
Sbjct: 233 WDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNRE 290
Query: 121 ---------AVNTVVLHPNQTELISGDQNGNIRVWD 147
                     V +V    +   L +G  NG+  VWD
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 6   VILATASYDKTIKFW--EAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAG-NPHIRLF 61
            +LA+   D+ I+ W  E  S  C   +     + V ++  +P  +YLA+A  +    ++
Sbjct: 29  TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 62  DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA 121
             N    + V + + H N V +V +   GN + + S D +V +W++     + EYE  + 
Sbjct: 89  KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE---EDEYECVSV 145
Query: 122 VNT-------VVLHPNQTELISGDQNGNIRV 145
           +N+       VV HP+Q  L S   +  +++
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKL 176

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 8   LATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVN 64
           + + S D T+K W  ++     +T +  +  V  +   P      A+G  +  ++++ + 
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 65  SSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
            S+P   ++  Q    N +      D  +M + S+D T+KIWD +   C    E   + V
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
           +  V HP    +ISG ++G +++W+  +++   E  L  GL 
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 8   LATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVN 64
           + + S D T+K W  ++     +T +  +  V  +   P      A+G  +  ++++ + 
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 65  SSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
            S+P   ++  Q    N +      D  +M + S+D T+KIWD +   C    E   + V
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
           +  V HP    +ISG ++G +++W+  +++   E  L  GL 
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLFD 62
           + +   D  ++ W  K G C  T+        V+ +  +P+      ++   +  ++++D
Sbjct: 124 IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
           +  ++ + V     HTN V +V    DG+   S  +DG  ++WDL       E  + A +
Sbjct: 183 L--ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
           N +   PN+  + +  + G IR++DL       EL  ++
Sbjct: 241 NQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEH 278

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIR 59
           +P V+  + S D T+K W  ++     +T +  +  V  +   P      A+G  +  ++
Sbjct: 109 KPYVL--SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 60  LFDVNSSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           ++ +  S+P   ++  Q    N +      D  +M + S+D T+KIWD +   C    E 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 119 RAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
             + V+  V HP    +ISG ++G +++W+  +++   E  L  GL 
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 3   QPSVILATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIR 59
           +P V+  + S D T+K W  ++     +T +  +  V  +   P      A+G  +  ++
Sbjct: 109 KPYVL--SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 60  LFDVNSSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
           ++ +  S+P   ++  Q    N +      D  +M + S+D T+KIWD +   C    E 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 119 RAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
             + V+  V HP    +ISG ++G +++W+  +++   E  L  GL 
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 45  PNKHYLAAAGNPHIRLFDVN---SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101
           P +H +   G   ++++D++   + SP   +      N + +     DG  +  G E  T
Sbjct: 62  PTRH-VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 102 VKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
           + IWDL AP  +++ E   S  A   + + P+     S   +GNI VWDL
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 46  NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
           + + +  A +  IR++D  S + + ++    H   V A+ +   G  + SGS D TV++W
Sbjct: 132 DNYVITGADDKXIRVYD--SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 106 DLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
           D++   C   +E   S      +V + N   +++G ++  + VW L   S   + G ++
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 46  NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
           + + +  A +  IR++D  S + + ++    H   V A+ +   G  + SGS D TV++W
Sbjct: 132 DNYVITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 106 DLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
           D++   C   +E   S      +V + N   +++G ++  + VW L   S   + G ++
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77  HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
           H   V  V      +W + + S D TVKIWDLR    +  +      R  VN     P+ 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
             L++ DQ   IRV+  +A+   C LGL
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGL 334

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77  HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
           H   V  V      +W + + S D TVKIWDLR    +  +      R  VN     P+ 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
             L++ DQ   IRV+  +A+   C LGL
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGL 334

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77  HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
           H   V  V      +W + + S D TVKIWDLR    +  +      R  VN     P+ 
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
             L++ DQ   IRV+  +A+   C LGL
Sbjct: 310 ARLLTTDQKSEIRVY--SASQWDCPLGL 335

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 34  PDSQVNRLEITP----NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89
           PD  +  L  +P        +A +    +R ++V  S      +   HT  V+ V +  D
Sbjct: 38  PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD 97
Query: 90  GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV--VLHPNQTELISGDQNGNIRVWD 147
           G+ +++ S D T K+WDL +       +  A V T+  +  PN + +++G  +  ++ WD
Sbjct: 98  GSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYL-AAAGNPHIRL---- 60
           ILAT S D+ IK           +++Y D + ++ L+ T +K  + + A  PH  L    
Sbjct: 26  ILATGSTDRKIKL---------VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76
Query: 61  -FDVNSSSPQPVMSYDQ------------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
            FD   S      S D+            H N V  V +  DG ++ + S D +V IW+ 
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 108 RAPVCQME-----YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155
                + E      E    V  V+ HP++  L S   +  +R+W    +   C
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30  TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
           T+     +V  L   P+  +LA+ GN +  L +V  S+P      P+ ++ QH   V AV
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 85  GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
            +   Q +      G+ D  ++IW++ +  C    ++ + V +++  P+  ELISG
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP--NKHYLAAAG--NPHIRLFD 62
           +  ++S+DKT+K W+  + +      + ++ V    ++P   KH L A G   P ++L D
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET-VYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172
Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLR 108
           + S S   ++    H   ++AV +    ++ + + S D  VK+WD+R
Sbjct: 173 LKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30  TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
           T+     +V  L   P+  +LA+ GN +  L +V  S+P      P+ ++ QH   V AV
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 85  GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
            +   Q +      G+ D  ++IW++ +  C    ++ + V +++  P+  ELISG
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 338

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30  TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
           T+     +V  L   P+  +LA+ GN +  L +V  S+P      P+ ++ QH   V AV
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 85  GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
            +   Q +      G+ D  ++IW++ +  C    ++ + V +++  P+  ELISG
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 349

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 10  TASYDKTIKFWEAKSGRCYRTIQYPDSQVNR-LEITPNKHYLAAAGNPHIRLFDVNSSSP 68
           TAS DKTIK W+  + +  +T     + V R L +  + H+++ + +  I+L D ++   
Sbjct: 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTG-- 215
Query: 69  QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
             + +Y+ H + V  +    +G+ + S  ED TV+IW
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251

>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92 Length = 357

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 93  MYSGSEDGTVKIWDLRA---PVCQME---YESRAAVNTVVLHP--NQTELI--SGDQNGN 142
           + +GS DGTVK+WD R    PV  ME    E++    TV      NQ E +  +G  NG+
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 143 IRVWDLTANSCSCELGLQYGLRTFLFYHQDMT 174
           I+++DL   +   E  ++ G+ +  F  +D++
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDIS 223

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 77  HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWD---------LRAPVCQMEYESRAAVNTVV 126
           HT  V+ + +   + N + SGSED TV +W+         LR PV  +E  ++  V  V 
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIVA 138
Query: 127 LHPN-QTELISGDQNGNIRVWDLTANSCSCELG 158
            HP  Q  L+S   +  I VWD+   +    LG
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.74
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.67
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.58
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.55
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.55
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.54
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.53
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.52
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.52
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.51
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.48
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.41
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.41
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.4
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.39
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.33
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.28
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.25
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.23
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.21
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.2
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.17
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.17
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.15
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.14
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.07
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.99
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.97
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.95
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.92
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.92
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.75
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.52
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.67
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.55
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.19
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.14
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.11
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.07
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.93
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.5
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.48
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.29
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.22
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.67
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.4
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.07
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.89
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.65
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.55
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.62
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.2
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	92.59
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.37
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.3
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.15
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.46
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.18
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	89.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.65
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.39
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.16
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	84.25
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.05
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.43
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	81.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.71

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=3.2e-28  Score=181.69  Aligned_cols=168  Identities=21%  Similarity=0.378  Sum_probs=142.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.|++||++++. .....+.+|...|.
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVM  144 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEE
Confidence            4567999999999999999999999999999999999999999877655 578899999997652 33445778999999


Q ss_pred             EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +++|+| ++..|++|+.|+.|++||++.......+  .+...+..+.++|  +++.|++|+.|++|++||++++++...+
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            999998 6789999999999999999876554443  3456788999987  6789999999999999999999999888


Q ss_pred             CcccceeEEEEEeec
Q 042260          158 GLQYGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (174)
                      ..+......+.+||+
T Consensus       225 ~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPT  239 (304)
T ss_dssp             ECCSSCEEEEEECSS
T ss_pred             CCCCCCEEEEEECCC
Confidence            766667777777776

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=4.3e-28  Score=184.51  Aligned_cols=168  Identities=17%  Similarity=0.250  Sum_probs=132.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +++.+|++|+.|++|++||+++++++..+..|...|.+++|++++. ++ +++.|+.|++||+++++.........+...
T Consensus       137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  216 (344)
T 4gqb_B          137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL  216 (344)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc
Confidence            3567899999999999999999999999999999999999999764 44 456789999999988754333333455667


Q ss_pred             EEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           81 VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        81 v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +.+++|++ +++++++|+.||.|++||+++.+++.++. +...|.+++|+|++ ++|++|+.|++|++||++.+++....
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~  296 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ  296 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence            99999998 56789999999999999999888777664 67889999999987 57899999999999999998766444


Q ss_pred             CcccceeEEEEEee
Q 042260          158 GLQYGLRTFLFYHQ  171 (174)
Q Consensus       158 ~~~~~~~~~~~~~~  171 (174)
                      .+...+.. +-+||
T Consensus       297 ~H~~~V~~-v~~sp  309 (344)
T 4gqb_B          297 AHRDFVRD-ATWSP  309 (344)
T ss_dssp             CCSSCEEE-EEECS
T ss_pred             CCCCCEEE-EEEeC
Confidence            44444443 44444

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=4.8e-28  Score=187.81  Aligned_cols=166  Identities=23%  Similarity=0.422  Sum_probs=144.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+|++|+.|++|++||+.+++....+..|...|.+++|+|++.++++ +.|+.|++||+.+.  ..+..+.+|...|.
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~  196 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVS  196 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEE
Confidence            4568999999999999999999999999999999999999999887665 57889999999765  45566778999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +++|+|+++++++|+.|+.|++||+++..+..++. +...|.++.++|++..|++|+.|++|++||++++.+..++....
T Consensus       197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~  276 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR  276 (410)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence            99999999999999999999999999988877764 56789999999999999999999999999999999888876555


Q ss_pred             ceeEEEEEee
Q 042260          162 GLRTFLFYHQ  171 (174)
Q Consensus       162 ~~~~~~~~~~  171 (174)
                      ....-+.++|
T Consensus       277 ~~v~~~~~~~  286 (410)
T 1vyh_C          277 HVVECISWAP  286 (410)
T ss_dssp             SCEEEEEECC
T ss_pred             ceEEEEEEcC
Confidence            5555555554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.2e-27  Score=180.26  Aligned_cols=167  Identities=19%  Similarity=0.335  Sum_probs=142.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||+++++....+..+...+.+++|+|++.+++++ .|+.|++||++++  ..+..+..|...+
T Consensus       132 pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--~~~~~~~~h~~~v  209 (321)
T 3ow8_A          132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPI  209 (321)
T ss_dssp             TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCC
T ss_pred             CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcccCCce
Confidence            356689999999999999999999998888888889999999999877654 6889999999876  4556678899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+++|+|++++|++|+.|+.|++||++.......+. +...|.+++|+|+++.|++++.|++|++||++++.+...+...
T Consensus       210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h  289 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH  289 (321)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence            999999999999999999999999999887776664 5678999999999999999999999999999999998887543


Q ss_pred             cceeEEEEEee
Q 042260          161 YGLRTFLFYHQ  171 (174)
Q Consensus       161 ~~~~~~~~~~~  171 (174)
                      .....-+-+++
T Consensus       290 ~~~v~~v~~s~  300 (321)
T 3ow8_A          290 QDQVWGVKYNG  300 (321)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCcEEEEEECC
Confidence            33333333333

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=1.2e-27  Score=178.51  Aligned_cols=153  Identities=20%  Similarity=0.431  Sum_probs=132.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||+++++.+..+..+..+|..+.|+|++.++++ +.|+.|++||++++  ..+..+.+|...|
T Consensus        23 p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~h~~~v  100 (304)
T 2ynn_A           23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYI  100 (304)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeCCCCcE
Confidence            35678999999999999999999999999999999999999998877665 57889999999877  4566778999999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+++|+|+++++++|+.|+.|++||++.. .....+ .+...|.+++|+| ++..|++|+.|++|++||++.......+
T Consensus       101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~  179 (304)
T 2ynn_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee
Confidence            99999999999999999999999999876 333444 4677899999999 5788999999999999999877655444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=1.8e-27  Score=180.21  Aligned_cols=164  Identities=24%  Similarity=0.368  Sum_probs=140.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      .+++++.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||++++  .....+..|...+.+++
T Consensus       156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAIC  233 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEE
T ss_pred             cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCcCCEEEEE
Confidence            3789999999999999999999999999999999999999887665 56899999999876  45666788999999999


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      |+|++++|++|+.|+.|++||++.......+.+.   ..|.+++|+|+++.|++|+.|+.|++||+....+...+.....
T Consensus       234 ~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~  313 (340)
T 1got_B          234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN  313 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence            9999999999999999999999988777666543   4799999999999999999999999999999888777654444


Q ss_pred             eeEEEEEeec
Q 042260          163 LRTFLFYHQD  172 (174)
Q Consensus       163 ~~~~~~~~~~  172 (174)
                      ...-+-++++
T Consensus       314 ~v~~~~~s~d  323 (340)
T 1got_B          314 RVSCLGVTDD  323 (340)
T ss_dssp             CEEEEEECTT
T ss_pred             cEEEEEEcCC
Confidence            4444444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=181.37  Aligned_cols=164  Identities=20%  Similarity=0.305  Sum_probs=133.9

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEe----ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTI----QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .|++|+.||+|++||+++++.+...    ..|...|.+++|+|++.++++ +.|+.|++||++++  ..+..+.+|...|
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~~~~h~~~V  172 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCE
T ss_pred             eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCcCCce
Confidence            5789999999999999998765443    368889999999999887765 46889999999876  5567788999999


Q ss_pred             EEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           82 MAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        82 ~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .+++|++++ ..+++++.|+.|++||+++.+....+.   +...+.+++|+|+ +++|++|+.||+|++||++++++..+
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~  252 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS  252 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence            999999987 478999999999999999887766553   3456899999995 56788999999999999999999988


Q ss_pred             cCcccceeEEEEEeec
Q 042260          157 LGLQYGLRTFLFYHQD  172 (174)
Q Consensus       157 ~~~~~~~~~~~~~~~~  172 (174)
                      +..+...+.-+-++|+
T Consensus       253 ~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          253 SAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             EECCSSCEEEEEECSS
T ss_pred             EcCCCCCEEEEEEccC
Confidence            8765555555556654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=4.3e-27  Score=176.78  Aligned_cols=163  Identities=21%  Similarity=0.398  Sum_probs=140.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||++.   .....+.+|...+
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v  151 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWV  151 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcE
Confidence            35678999999999999999999999999999999999999998876655 5788999999964   3455677899999


Q ss_pred             EEEEEeeC------CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCD------GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~------~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .++.+.|.      +..+++++.|+.|++||+++......+ .+..+|.+++|+|+++.|++|+.||+|++||++++++.
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999884      458999999999999999988776665 46788999999999999999999999999999999988


Q ss_pred             eecCcccceeEEEE
Q 042260          155 CELGLQYGLRTFLF  168 (174)
Q Consensus       155 ~~~~~~~~~~~~~~  168 (174)
                      ..+..+..+....|
T Consensus       232 ~~~~~~~~v~~~~~  245 (319)
T 3frx_A          232 YTLSAQDEVFSLAF  245 (319)
T ss_dssp             EEEECCSCEEEEEE
T ss_pred             EEecCCCcEEEEEE
Confidence            88776655544433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=178.73  Aligned_cols=166  Identities=20%  Similarity=0.406  Sum_probs=142.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.++++++.|++|++||+++++.+..+..+...+..++|+|++.+++++ .++.+++||+++++  ....+..|...+.
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~  168 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFIL  168 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEE
Confidence            45579999999999999999999999998888889999999998877765 67899999998763  4555677888999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +++|+|++++|++|+.|+.|++||+++.+....+. +..+|.+++|+|+++.|++|+.|++|++||++...+...+....
T Consensus       169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  248 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA  248 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence            99999999999999999999999999988877775 56789999999999999999999999999999988887776444


Q ss_pred             ceeEEEEEee
Q 042260          162 GLRTFLFYHQ  171 (174)
Q Consensus       162 ~~~~~~~~~~  171 (174)
                      ....-+-++|
T Consensus       249 ~~v~~~~~sp  258 (321)
T 3ow8_A          249 SWVLNVAFCP  258 (321)
T ss_dssp             SCEEEEEECT
T ss_pred             CceEEEEECC
Confidence            4444444444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=6.6e-27  Score=178.23  Aligned_cols=167  Identities=24%  Similarity=0.335  Sum_probs=140.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++..|++++.|++|++||+++++.+..+..|...|.+++++|.  +.++ +++.|+.+++||++++  .+...+..|...
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~~~~h~~~  242 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETHESD  242 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEEECCCSSC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCCC
Confidence            3457899999999999999999999999999999999999874  4444 4567899999999887  456667889999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      |.+++|+|++..|++|+.|+.|++||++.......+..   ...+.+++|+|+++.|++|+.|++|++||+.++.+...+
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            99999999999999999999999999998776655543   246899999999999999999999999999998888777


Q ss_pred             CcccceeEEEEEeec
Q 042260          158 GLQYGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (174)
                      ........-+-++|+
T Consensus       323 ~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          323 FGHENRVSTLRVSPD  337 (354)
T ss_dssp             CCCSSCEEEEEECTT
T ss_pred             ECCCCcEEEEEECCC
Confidence            555555555555554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=5e-27  Score=182.08  Aligned_cols=167  Identities=25%  Similarity=0.460  Sum_probs=144.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++..|++|+.|++|++||+++++++..+..|...|..+.++|++.++++ +.|+.+++||++++  .....+..|...+.
T Consensus       203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h~~~v~  280 (410)
T 1vyh_C          203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREHRHVVE  280 (410)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeEecCCCceEE
Confidence            4568999999999999999999999999999989999999999887765 56889999999876  44556778999999


Q ss_pred             EEEEeeC--------------------CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260           83 AVGFQCD--------------------GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        83 ~~~~~~~--------------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      +++|+|+                    +.++++|+.|+.|++||+++..+...+. +...|.+++|+|+++.|++|+.|+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999985                    6789999999999999999988877664 667899999999999999999999


Q ss_pred             cEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          142 NIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      +|++||++++++...+........-+-+|++
T Consensus       361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  391 (410)
T 1vyh_C          361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT  391 (410)
T ss_dssp             EEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence            9999999999988887655555555666654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.5e-26  Score=171.36  Aligned_cols=167  Identities=24%  Similarity=0.428  Sum_probs=141.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||..+++....+..|...|.+++|+|++.++++ +.|+.+++||++++  ..+..+..|...+
T Consensus        33 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v  110 (312)
T 4ery_A           33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYV  110 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred             CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEEEcCCCCCE
Confidence            35668999999999999999999999999889899999999999887665 56889999999876  4456677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-c
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-L  159 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  159 (174)
                      .+++|+++++++++|+.|+.|++||+++..+...+. +..+|.+++|+|+++.|++++.|+.|++||++++++...+. .
T Consensus       111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  190 (312)
T 4ery_A          111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD  190 (312)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence            999999999999999999999999999887776664 56789999999999999999999999999999988776653 2


Q ss_pred             ccceeEEEEEee
Q 042260          160 QYGLRTFLFYHQ  171 (174)
Q Consensus       160 ~~~~~~~~~~~~  171 (174)
                      .......+.+++
T Consensus       191 ~~~~~~~~~~~~  202 (312)
T 4ery_A          191 DNPPVSFVKFSP  202 (312)
T ss_dssp             SCCCEEEEEECT
T ss_pred             CCCceEEEEECC
Confidence            223344444444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=4.3e-26  Score=172.58  Aligned_cols=169  Identities=17%  Similarity=0.319  Sum_probs=142.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC--CCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP--QPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~--~~~~~~~~~~~   79 (174)
                      +++.+|++|+.|++|++||..+++.+..+..+...|.+++|+|++.++++ +.|+.+++|++.+...  .....+.+|..
T Consensus        65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~  144 (340)
T 1got_B           65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG  144 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence            35678999999999999999999999999989889999999999887765 4688999999976532  23445678999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .+.++.|++++. +++++.|+.|++||+++......+. +...|.+++|+|+++.+++|+.|++|++||++++.+...+.
T Consensus       145 ~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          145 YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            999999988765 8999999999999999988877764 66789999999999999999999999999999998888776


Q ss_pred             cccceeEEEEEeec
Q 042260          159 LQYGLRTFLFYHQD  172 (174)
Q Consensus       159 ~~~~~~~~~~~~~~  172 (174)
                      .......-+-++|+
T Consensus       224 ~h~~~v~~v~~~p~  237 (340)
T 1got_B          224 GHESDINAICFFPN  237 (340)
T ss_dssp             CCSSCEEEEEECTT
T ss_pred             CCcCCEEEEEEcCC
Confidence            55554554555543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=2.4e-26  Score=172.73  Aligned_cols=166  Identities=22%  Similarity=0.355  Sum_probs=136.0

Q ss_pred             cEEEEEeeCCCcEEEEECCC-----CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKS-----GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      +.+|+|||.|++|++||+.+     +..+..+..|...|.+++|+|++.++++ +.|+.|++||++++  .....+.+|.
T Consensus        30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~  107 (319)
T 3frx_A           30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHK  107 (319)
T ss_dssp             TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCS
T ss_pred             ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCC
Confidence            46899999999999999864     3456778889999999999999887665 56899999999877  4456678899


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC------CEEEEeeCCCcEEEEeCCCCc
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ------TELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..|.+++|+++++++++|+.|+.|++||++.........+...|.++.+.|+.      ..+++++.|+.|++||++..+
T Consensus       108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            99999999999999999999999999999876655545677889999999854      479999999999999999988


Q ss_pred             ceeecCcccceeEEEEEeec
Q 042260          153 CSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~  172 (174)
                      +..++........-+-++|+
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTT
T ss_pred             hheeecCCCCcEEEEEEcCC
Confidence            77776544444444444443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=1.1e-26  Score=177.19  Aligned_cols=166  Identities=14%  Similarity=0.238  Sum_probs=139.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +++.+|++|+.|++|++||+++++.+..+..|...|.+++|++++.  +++++.|+.|++||+++++.........+...
T Consensus       149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~  228 (357)
T 4g56_B          149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI  228 (357)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence            3567899999999999999999999999999999999999998753  45566789999999988765554445567788


Q ss_pred             EEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           81 VMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        81 v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +.+++|+|+ +.+|++|+.|+.|++||++++.+...+. +...|.+++|+|++ ++|++|+.|++|++||++++++...+
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            999999986 5689999999999999999887776664 56789999999987 57899999999999999999888777


Q ss_pred             CcccceeEEEE
Q 042260          158 GLQYGLRTFLF  168 (174)
Q Consensus       158 ~~~~~~~~~~~  168 (174)
                      .+...+....|
T Consensus       309 ~H~~~V~~vaf  319 (357)
T 4g56_B          309 SHRDFVTGVAW  319 (357)
T ss_dssp             CCSSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            76665555444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=3.8e-26  Score=169.92  Aligned_cols=170  Identities=16%  Similarity=0.237  Sum_probs=133.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCC--CceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            3 QPSVILATASYDKTIKFWEAKS--GRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .++.+|+||+.|++|++||+.+  ++.+..+..|...|.+++|++.  +.+++ ++.|+.|++||++++.......+..|
T Consensus        19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h   98 (297)
T 2pm7_B           19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH   98 (297)
T ss_dssp             TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC
Confidence            3567899999999999999874  4667888899999999999863  55554 56789999999987755556667789


Q ss_pred             CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCe---eEEeecccCcEEEEEEccC-------------CCEEEEeeC
Q 042260           78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPV---CQMEYESRAAVNTVVLHPN-------------QTELISGDQ  139 (174)
Q Consensus        78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~-------------~~~l~s~~~  139 (174)
                      ...|.+++|+|+  +.+|++++.|+.|++||++...   ......+...|.+++|+|+             ++.|++|+.
T Consensus        99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~  178 (297)
T 2pm7_B           99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  178 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred             CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence            999999999997  8899999999999999998652   1222356778999999997             468999999


Q ss_pred             CCcEEEEeCCCCc----ceeecCcccceeEEEEEeec
Q 042260          140 NGNIRVWDLTANS----CSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       140 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~  172 (174)
                      |++|++||++.+.    +...+..+.....-+-++|+
T Consensus       179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence            9999999998766    33344433444444445553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=175.67  Aligned_cols=168  Identities=20%  Similarity=0.335  Sum_probs=133.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEE--e-ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRT--I-QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++.+|++|+.|++|++||+++++....  + ..|...|.+++|+|++.++++ +.|+.+++||+..+.......+.+|..
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~  106 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN  106 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC
Confidence            567899999999999999988764322  2 457888999999999887765 468899999998765556677889999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc--
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC--  153 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--  153 (174)
                      .|.+++|+|++++|++|+.|+.|++||++...   +...+ .+...|.+++|+|+++.|++|+.|++|++||++.+..  
T Consensus       107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~  186 (345)
T 3fm0_A          107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC  186 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence            99999999999999999999999999997642   23333 4567899999999999999999999999999988753  


Q ss_pred             eeecCcccceeEEEEEee
Q 042260          154 SCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~  171 (174)
                      ...+........-+-++|
T Consensus       187 ~~~~~~h~~~v~~l~~sp  204 (345)
T 3fm0_A          187 CATLEGHESTVWSLAFDP  204 (345)
T ss_dssp             EEEECCCSSCEEEEEECT
T ss_pred             EEEecCCCCceEEEEECC
Confidence            344443333334444444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=2.3e-26  Score=174.23  Aligned_cols=147  Identities=18%  Similarity=0.429  Sum_probs=121.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.++++|+.|++|++||+++++.+..+..|...|.+++|+|++..+++ +.|+.|++||+.............|...+.
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            4568999999999999999999999999999999999999999876654 578999999997431111111126788899


Q ss_pred             EEEEeeCC----------CEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDG----------NWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~----------~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      +++|+|++          .++++++.|+.|++||.+. .....+ .+...|.+++|+|+++.|++|+.|+.|++||++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999876          7899999999999999654 333333 56788999999999999999999999999999543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.3e-26  Score=170.20  Aligned_cols=165  Identities=23%  Similarity=0.367  Sum_probs=124.2

Q ss_pred             EEEEeeCCCcEEEEECCCC--ceeEEe-ec-CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC-----CCCeEEeec
Q 042260            7 ILATASYDKTIKFWEAKSG--RCYRTI-QY-PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS-----PQPVMSYDQ   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~-----~~~~~~~~~   76 (174)
                      +|++|+.|++|++||++++  +....+ .. |...|.+++|+|++.++++ +.|+.|++||++...     ......+.+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            7999999999999999875  344445 33 7788999999999887765 468999999985421     234456778


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC----eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP----VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      |...|.+++|+|++++|++|+.|+.|++||++..    .+...+ .+...|.+++|+|+++.|++|+.|++|++||++.+
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999999999999999999999532    344444 46778999999999999999999999999999876


Q ss_pred             --cceeecCcccceeEEEEEee
Q 042260          152 --SCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~  171 (174)
                        .+...+..+.....-+-+++
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECC
T ss_pred             CeeEEEEccCCCCcEEEEEecC
Confidence              45555543333343344444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=4.7e-26  Score=174.87  Aligned_cols=152  Identities=26%  Similarity=0.434  Sum_probs=128.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEe-----ecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTI-----QYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      +..|++|+.|++|++||+++++.+..+     ..|...|.++.+++ ++.+++ ++.|+.|++||++... .....+.+|
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h  248 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH  248 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc
Confidence            446899999999999999999988776     45677899999987 555554 5678999999997543 345667889


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------CcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------AAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ...|.+++|+|++++|++|+.|+.|++||+++......+...        ..|.+++|+|+++.|++|+.||.|++||+.
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            999999999999999999999999999999998876655321        238899999999999999999999999999


Q ss_pred             CCcceeec
Q 042260          150 ANSCSCEL  157 (174)
Q Consensus       150 ~~~~~~~~  157 (174)
                      .+++...+
T Consensus       329 ~~~~~~~~  336 (380)
T 3iz6_a          329 LAEMVLNL  336 (380)
T ss_dssp             TCCEEEEE
T ss_pred             CCceEEEE
Confidence            88877665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.8e-25  Score=166.67  Aligned_cols=154  Identities=26%  Similarity=0.522  Sum_probs=135.3

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||+++++.+..+..|...|.++.|+|++.++++ +.|+.+++||++++  .....+..|...+
T Consensus        75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v  152 (312)
T 4ery_A           75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLKTLPAHSDPV  152 (312)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--EEEEEecCCCCcE
Confidence            35678999999999999999999999999999999999999998877665 56889999999876  4456677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .+++|+++++++++++.|+.|++||+++......+  .+..++..++|+|+++.|++++.|+.|++||++.+++...+.
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence            99999999999999999999999999987766555  345679999999999999999999999999999988776654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1.6e-25  Score=169.54  Aligned_cols=165  Identities=17%  Similarity=0.272  Sum_probs=129.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      ++.+|+||+.|++|++||+.++       .....+..|...|.+++|+|++.++++ +.|+.+++||++++  .....+.
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~  115 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFV  115 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEc
Confidence            5779999999999999998653       345667788889999999999887665 56899999999876  4456678


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCC----------CEEEEeeCCCc
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQ----------TELISGDQNGN  142 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~s~~~d~~  142 (174)
                      +|...|.+++|+|++++|++++.|+.|++||+.........   .+...|.+++|+|++          ..+++++.|+.
T Consensus       116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  195 (343)
T 2xzm_R          116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR  195 (343)
T ss_dssp             CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence            89999999999999999999999999999999854433222   356779999999987          68999999999


Q ss_pred             EEEEeCCCCcceeecCcccceeEEEEEee
Q 042260          143 IRVWDLTANSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       143 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      |++||.+ ..+...+........-+-++|
T Consensus       196 i~iwd~~-~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          196 LKVWNTN-FQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             EEEEETT-TEEEEEEECCSSCEEEEEECT
T ss_pred             EEEEcCC-CceeEEEcCccccceEEEECC
Confidence            9999943 444444433333333333343

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=2.1e-25  Score=169.89  Aligned_cols=168  Identities=18%  Similarity=0.278  Sum_probs=141.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCC----CCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSS----PQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~----~~~~~~~~~~~   78 (174)
                      ++..|+|||.|++|++||..+++....+..+...|..++|+|++..++++ .|+.+++|++....    ......+..|.
T Consensus        75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~  154 (354)
T 2pbi_B           75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT  154 (354)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence            56789999999999999999999998888888889999999999887765 68889999986432    12344566899


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ..+.++.|+++++.|++++.|+.|++||+++..+...+. +...|.++.++|  +++.|++|+.||+|++||++++.+..
T Consensus       155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~  234 (354)
T 2pbi_B          155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ  234 (354)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            999999999999999999999999999999988777764 567899999988  46799999999999999999999888


Q ss_pred             ecCcccceeEEEEEee
Q 042260          156 ELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       156 ~~~~~~~~~~~~~~~~  171 (174)
                      .+........-+-++|
T Consensus       235 ~~~~h~~~v~~v~~~p  250 (354)
T 2pbi_B          235 AFETHESDVNSVRYYP  250 (354)
T ss_dssp             EECCCSSCEEEEEECT
T ss_pred             EecCCCCCeEEEEEeC
Confidence            8765544444444454

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=6.8e-26  Score=173.94  Aligned_cols=147  Identities=18%  Similarity=0.479  Sum_probs=123.4

Q ss_pred             CcEEEEEeeCCCcEEEEECC-CCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecC----
Q 042260            4 PSVILATASYDKTIKFWEAK-SGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQH----   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~----   77 (174)
                      ++.+|++|+.|++|++||++ +++.+..+..|...|.+++|+|++.++++ +.|+.+++||++++.  .+..+..+    
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~  294 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRN  294 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEeccccccc
Confidence            45689999999999999997 45778888889999999999999887665 568899999998763  23333322    


Q ss_pred             ---CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           78 ---TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        78 ---~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                         ...+.+++|+++|+++++|+.||.|++||+........+     .|...|.+++|+|++..|++|+.|++|++|++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence               234889999999999999999999999999887766554     356789999999999999999999999999998


Q ss_pred             CCc
Q 042260          150 ANS  152 (174)
Q Consensus       150 ~~~  152 (174)
                      ..+
T Consensus       375 ~~~  377 (380)
T 3iz6_a          375 GHR  377 (380)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=6.7e-25  Score=177.85  Aligned_cols=148  Identities=20%  Similarity=0.361  Sum_probs=127.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-------cCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD-------QHT   78 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~-------~~~   78 (174)
                      .|++|+.|++|++||..++++...+..|...|.+++|+|++.++++ +.|+.|++||+.+++  ....+.       +|.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~  239 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHS  239 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSS
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EeeeeccccccccccC
Confidence            6999999999999999999999999999999999999999887765 578999999998764  233332       689


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee------------------------------------------
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY------------------------------------------  116 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~------------------------------------------  116 (174)
                      ..|.+++|+|++++|++++.|+.|++||+++..+..++                                          
T Consensus       240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~  319 (611)
T 1nr0_A          240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV  319 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence            99999999999999999999999999999876544322                                          


Q ss_pred             --cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          117 --ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       117 --~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                        .|...|.+++|+|+++.|++++.|++|++||++++.+...
T Consensus       320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence              3456799999999999999999999999999998876544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=8.8e-25  Score=168.44  Aligned_cols=146  Identities=21%  Similarity=0.459  Sum_probs=123.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++..+++ +.|+.+++||+++++  ....+. +...+.
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~-~~~~v~  210 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLTLS-IEDGVT  210 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEE-CSSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--eEEEEE-cCCCcE
Confidence            4668999999999999999999999999999999999999998876654 578899999998763  333333 567799


Q ss_pred             EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ++++++ +++++++|+.|+.|++||+++......+        .+...|.+++|+|+++.|++|+.|++|++||++...
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            999998 8999999999999999999987765544        356789999999999999999999999999998643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=6.4e-25  Score=163.29  Aligned_cols=148  Identities=20%  Similarity=0.354  Sum_probs=121.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+|+||+.|++|++||+++++  .+..+..|...|.+++|+|+  +.++ +++.|+.+++||++.+.......+..|..
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence            5689999999999999998874  45666678889999999996  5555 45678999999998764333455678999


Q ss_pred             CEEEEEEeeC-------------CCEEEEecCCCcEEEEeCCCCe----eEEee-cccCcEEEEEEccCC---CEEEEee
Q 042260           80 NVMAVGFQCD-------------GNWMYSGSEDGTVKIWDLRAPV----CQMEY-ESRAAVNTVVLHPNQ---TELISGD  138 (174)
Q Consensus        80 ~v~~~~~~~~-------------~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~~---~~l~s~~  138 (174)
                      .+.+++|+|+             +++|++|+.|+.|++||++...    ....+ .|...|.+++|+|++   ..|++++
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            9999999986             5799999999999999997643    33344 467889999999985   7899999


Q ss_pred             CCCcEEEEeCCCCc
Q 042260          139 QNGNIRVWDLTANS  152 (174)
Q Consensus       139 ~d~~i~iwd~~~~~  152 (174)
                      .|++|++||++...
T Consensus       227 ~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          227 QDRTCIIWTQDNEQ  240 (297)
T ss_dssp             TTSCEEEEEESSTT
T ss_pred             CCCcEEEEEeCCCC
Confidence            99999999998743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.7e-25  Score=166.36  Aligned_cols=148  Identities=20%  Similarity=0.366  Sum_probs=119.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-------CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC--CCCeEE
Q 042260            4 PSVILATASYDKTIKFWEAKS-------GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS--PQPVMS   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~--~~~~~~   73 (174)
                      ++.+|++|+.|++|++||.+.       .+.+..+..|...|.+++|+|++.++++ +.|+.+++||++...  ..++..
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            466899999999999999853       3456677788889999999999887765 468899999995432  234556


Q ss_pred             eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee-cccCcEEEEEEccC--CCEEEEeeCCCcEEEEeC
Q 042260           74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY-ESRAAVNTVVLHPN--QTELISGDQNGNIRVWDL  148 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~  148 (174)
                      +..|...|.+++|+|++++|++|+.|+.|++||.+..  .+...+ .|...|.+++|+|+  +..|++|+.|++|++||+
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            7789999999999999999999999999999998765  444455 46788999999998  668999999999999999


Q ss_pred             CCC
Q 042260          149 TAN  151 (174)
Q Consensus       149 ~~~  151 (174)
                      +.+
T Consensus       229 ~~~  231 (330)
T 2hes_X          229 MGD  231 (330)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=7e-26  Score=172.54  Aligned_cols=168  Identities=13%  Similarity=0.143  Sum_probs=126.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC-CCeEEeec-C
Q 042260            4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQ-H   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~-~   77 (174)
                      ++.+|++++.|++|++||+++++   ....+..|...|.+++|+|++.+++ ++.|+.+++||++.++. .....+.. |
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            46789999999999999999887   5666667888999999999887655 45788999999987642 23444556 8


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC------------------CeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA------------------PVCQMEYESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      ...+.+++|++++++|++++.|+.|++||++.                  ..+...+.+...|.+++|+|+++.|++++.
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence            99999999999999999999999999999852                  334444566788999999999999999999


Q ss_pred             CCcEEEEeCCCCcc----eeecCcccceeEEEEEee
Q 042260          140 NGNIRVWDLTANSC----SCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       140 d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~  171 (174)
                      |+.|++||++++.+    ...+........-+-+++
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN  261 (377)
T ss_dssp             TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE
T ss_pred             CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC
Confidence            99999999999887    555554444444444444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=3.6e-25  Score=170.68  Aligned_cols=154  Identities=17%  Similarity=0.248  Sum_probs=131.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .++.+|++|+.|++|++||+++++....+..|...|.+++|+|++.++++ +.|+.+++||+++++  ....+..|...+
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v  184 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATV  184 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECCSSCE
T ss_pred             cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcE
Confidence            35678999999999999999999888887889899999999999876665 568899999998764  455677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc----cCcEEE---------------------EEEccCCCEEEE
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES----RAAVNT---------------------VVLHPNQTELIS  136 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~---------------------~~~~~~~~~l~s  136 (174)
                      .+++|++++++|++++.|+.|++||+++......+..    ...+.+                     ++|+|+++.|++
T Consensus       185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA  264 (420)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence            9999999999999999999999999999887766642    234444                     455788999999


Q ss_pred             eeCCCcEEEEeCCCCcceeecC
Q 042260          137 GDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      |+.||.|++||++++....++.
T Consensus       265 ~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          265 GHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC
T ss_pred             EcCCCeEEEEECCCCceeEEcc
Confidence            9999999999999988776664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=1.5e-24  Score=167.15  Aligned_cols=152  Identities=26%  Similarity=0.474  Sum_probs=129.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC------------------CCeEEEEEcCCCceEEE-ecCCcEEEEEc
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD------------------SQVNRLEITPNKHYLAA-AGNPHIRLFDV   63 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~~-~~d~~i~i~d~   63 (174)
                      +++.+|++|+ |+++++|++.+++.+..+..+.                  ..|.+++|+|++.++++ +.|+.|++||+
T Consensus        74 pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~  152 (393)
T 1erj_A           74 NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI  152 (393)
T ss_dssp             TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            3566788876 7899999999998877765432                  13889999999887765 46889999999


Q ss_pred             CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCc
Q 042260           64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGDQNGN  142 (174)
Q Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~  142 (174)
                      .++  .....+.+|...|.+++|++++++|++++.|+.|++||+++..+...+.....+.+++++| +++.|++|+.|+.
T Consensus       153 ~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~  230 (393)
T 1erj_A          153 ENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA  230 (393)
T ss_dssp             TTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSC
T ss_pred             CCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            876  4456678899999999999999999999999999999999998888888888899999999 8899999999999


Q ss_pred             EEEEeCCCCcceeec
Q 042260          143 IRVWDLTANSCSCEL  157 (174)
Q Consensus       143 i~iwd~~~~~~~~~~  157 (174)
                      |++||++++.+...+
T Consensus       231 v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          231 VRVWDSETGFLVERL  245 (393)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcEEEee
Confidence            999999988776554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=6.3e-26  Score=170.20  Aligned_cols=169  Identities=14%  Similarity=0.197  Sum_probs=130.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--Cc-eEEEecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++.+|+||+.|++|++||+++++  .+..+..|...|.+++|++.  +. +++++.|+.|++||++++.......+..|.
T Consensus        24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~  103 (316)
T 3bg1_A           24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD  103 (316)
T ss_dssp             GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence            56789999999999999998775  46778889999999999752  44 455567999999999876555566677899


Q ss_pred             CCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee---EEee-cccCcEEEEEEccC-----------------CCEEE
Q 042260           79 NNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC---QMEY-ESRAAVNTVVLHPN-----------------QTELI  135 (174)
Q Consensus        79 ~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~-----------------~~~l~  135 (174)
                      ..|.+++|+|+  +.+|++|+.|+.|++||++....   ...+ .+...|.+++|+|+                 +..|+
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence            99999999997  78999999999999999986521   1222 34567899999987                 36899


Q ss_pred             EeeCCCcEEEEeCCCC---cceeecCcccceeEEEEEeec
Q 042260          136 SGDQNGNIRVWDLTAN---SCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      +|+.|++|++||++..   .+...+..+.....-+-++|+
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence            9999999999999754   244444433344444444443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.9e-26  Score=180.37  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=124.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCce-----------eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRC-----------YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~   73 (174)
                      +.+||+++.|++|++||+.+++.           ...+..|...|.+++|++.+.+++++.|+.|++||++++. .+...
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~~~  303 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPSFY  303 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCSEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-CceEE
Confidence            56899999999999999987642           2356677889999999987766667789999999998653 33445


Q ss_pred             eecCCCCEEEE--EEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeecc--c-CcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           74 YDQHTNNVMAV--GFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYES--R-AAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        74 ~~~~~~~v~~~--~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      +..|...|.++  .|++++ .+|+||+.|++|+|||+++..+...+..  . ..|.+++|+|++..+++++.|++|++||
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd  383 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP  383 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence            67899999999  467777 8999999999999999988665444322  1 2478999999999999999999999999


Q ss_pred             CCCCcceeecC
Q 042260          148 LTANSCSCELG  158 (174)
Q Consensus       148 ~~~~~~~~~~~  158 (174)
                      ++++.+...+.
T Consensus       384 ~~~~~~~~~l~  394 (524)
T 2j04_B          384 SRAAFAVHPLV  394 (524)
T ss_dssp             TTCTTCCEEEE
T ss_pred             Ccccccceeee
Confidence            99988866553

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=3.4e-25  Score=169.01  Aligned_cols=156  Identities=21%  Similarity=0.331  Sum_probs=123.1

Q ss_pred             CCcEEEEEeeC------CCcEEEEECCCCcee----EEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe-
Q 042260            3 QPSVILATASY------DKTIKFWEAKSGRCY----RTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV-   71 (174)
Q Consensus         3 ~~~~~l~s~s~------D~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-   71 (174)
                      +++.+|++||.      |++|++|+..++...    .....|...|.+++|+|++.+++++.|+.|++||+.+++.... 
T Consensus        52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~  131 (357)
T 4g56_B           52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN  131 (357)
T ss_dssp             SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC
T ss_pred             CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE
Confidence            46789999997      788999998776542    2334567789999999999999999999999999987654332 


Q ss_pred             -EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeC
Q 042260           72 -MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDL  148 (174)
Q Consensus        72 -~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~  148 (174)
                       ....+|...|.+++|+|++++|++|+.|+.|++||+++..+...+. +...|.+++|+|++. .+++++.|++|++||+
T Consensus       132 ~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred             eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence             3345789999999999999999999999999999999998887775 567899999999875 7889999999999999


Q ss_pred             CCCcceeecC
Q 042260          149 TANSCSCELG  158 (174)
Q Consensus       149 ~~~~~~~~~~  158 (174)
                      +++++.....
T Consensus       212 ~~~~~~~~~~  221 (357)
T 4g56_B          212 RKPKPATRID  221 (357)
T ss_dssp             TSSSCBCBCC
T ss_pred             CCCceeeeee
Confidence            9887765543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=5.3e-25  Score=166.97  Aligned_cols=146  Identities=22%  Similarity=0.393  Sum_probs=124.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC-CCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP-QPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~-~~~~~~~~~~~   79 (174)
                      ++.+|++|+.|+++++||..++  +++..+..|...|.+++|+|++.++++ +.|+.+++||++.+.. .....+..|..
T Consensus        72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence            5678999999999999998776  456778889899999999999887765 5688999999976532 33455678999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe--eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV--CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.+++|+|++++|++|+.|+.|++||++...  +..++ .+...|.+++|+|+++.|++|+.|++|++||..
T Consensus       152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            99999999999999999999999999998764  23344 467889999999999999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=1.2e-24  Score=166.43  Aligned_cols=164  Identities=9%  Similarity=0.052  Sum_probs=133.2

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ   87 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~   87 (174)
                      +++++.|++|++||+++++++..+. +...|.+++|+|++.+++++.++.+++|+..+++.........|...+.+++|+
T Consensus       150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs  228 (365)
T 4h5i_A          150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFI  228 (365)
T ss_dssp             EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred             EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence            3567789999999999999988886 566799999999999999888888999998776543333445688889999999


Q ss_pred             eCCCEEEEecCCC----cEEEEeCCCCeeE----Ee-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-
Q 042260           88 CDGNWMYSGSEDG----TVKIWDLRAPVCQ----ME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-  157 (174)
Q Consensus        88 ~~~~~l~t~~~dg----~v~iwd~~~~~~~----~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  157 (174)
                      |+++.+++++.|+    .+++||+......    .. ..+..+|.+++|+|++++|++|+.|++|+|||++++++...+ 
T Consensus       229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~  308 (365)
T 4h5i_A          229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK  308 (365)
T ss_dssp             ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence            9999999999887    6888998765432    12 245678999999999999999999999999999999988874 


Q ss_pred             CcccceeEEEEEeec
Q 042260          158 GLQYGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (174)
                      ..+...+.-+-++||
T Consensus       309 ~gH~~~V~~v~fSpd  323 (365)
T 4h5i_A          309 QAHSFAITEVTISPD  323 (365)
T ss_dssp             TSSSSCEEEEEECTT
T ss_pred             CcccCCEEEEEECCC
Confidence            544555555556665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=2.6e-24  Score=176.47  Aligned_cols=166  Identities=22%  Similarity=0.370  Sum_probs=135.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      +.+|+|||.|++|++||+.++     .....+..|...|.+++|+|++.++++ +.|+.|++||+.++  .....+.+|.
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~  472 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHT  472 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCS
T ss_pred             CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCC
Confidence            468999999999999998753     345677889999999999999887765 56889999999876  4456677899


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCC--CEEEEeeCCCcEEEEeCCCCc
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ--TELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..|.+++|++++++|++|+.|+.|++||+.........    .|...|.+++|+|++  ..+++++.|++|++||++..+
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            99999999999999999999999999998765433222    345679999999986  579999999999999999988


Q ss_pred             ceeecCcccceeEEEEEeec
Q 042260          153 CSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~  172 (174)
                      +...+..+...+.-+-++++
T Consensus       553 ~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTT
T ss_pred             EEEEEcCCCCCEEEEEEeCC
Confidence            88777655555555555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=9.3e-25  Score=179.10  Aligned_cols=164  Identities=20%  Similarity=0.318  Sum_probs=136.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCe-EEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPV-MSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~   80 (174)
                      .++.+|+||+.|++|++||+.+++....+..|...|.+++|+|++..++ ++.|+.|++||......... .....|...
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence            3567899999999999999999999999999999999999999887655 45789999999864311100 011358888


Q ss_pred             EEEEEEeeCC--CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           81 VMAVGFQCDG--NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        81 v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +.+++|++++  ..+++++.|+.|++||++...+...+. |...|.+++|+|+++.|++|+.||.|++||++++++...+
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~  599 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL  599 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence            9999999976  589999999999999999887776664 6778999999999999999999999999999999988877


Q ss_pred             CcccceeEE
Q 042260          158 GLQYGLRTF  166 (174)
Q Consensus       158 ~~~~~~~~~  166 (174)
                      .....+...
T Consensus       600 ~~~~~v~~~  608 (694)
T 3dm0_A          600 EANSVIHAL  608 (694)
T ss_dssp             BCSSCEEEE
T ss_pred             cCCCcEEEE
Confidence            655544443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=4e-24  Score=159.50  Aligned_cols=148  Identities=16%  Similarity=0.307  Sum_probs=121.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC----ceeEEeecCCCCeEEEEEcC--CCceEE-EecCCcEEEEEcCCCCC-------C
Q 042260            4 PSVILATASYDKTIKFWEAKSG----RCYRTIQYPDSQVNRLEITP--NKHYLA-AAGNPHIRLFDVNSSSP-------Q   69 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~-~~~d~~i~i~d~~~~~~-------~   69 (174)
                      ++.+|++|+.|++|++||+.++    +....+..|...|.+++|+|  ++.+++ ++.|+.+++||++.+..       .
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  101 (351)
T 3f3f_A           22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN  101 (351)
T ss_dssp             SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred             CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence            5668999999999999999876    35666778889999999998  355555 56789999999987643       3


Q ss_pred             CeEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee-----------------------------------
Q 042260           70 PVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC-----------------------------------  112 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~-----------------------------------  112 (174)
                      ....+..|...+.+++|+++  ++++++++.||.|++||+++...                                   
T Consensus       102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  181 (351)
T 3f3f_A          102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS  181 (351)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred             eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence            35567789999999999999  99999999999999999864321                                   


Q ss_pred             -------------------------EEee-cccCcEEEEEEccCC----CEEEEeeCCCcEEEEeCCCC
Q 042260          113 -------------------------QMEY-ESRAAVNTVVLHPNQ----TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       113 -------------------------~~~~-~~~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~  151 (174)
                                               ...+ .+...|.+++|+|++    +.|++|+.||.|++||++.+
T Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence                                     1112 245689999999998    78999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=7.3e-24  Score=159.77  Aligned_cols=165  Identities=19%  Similarity=0.338  Sum_probs=133.2

Q ss_pred             cEEEEEeeCCCcEEEEECCC-Ccee-EEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKS-GRCY-RTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+|++|+.|++|++||+++ ++.+ ..+..|...|.+++|+|++.++++ +.|+.+++||+++++   ......|...+
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~v  130 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---AIQIAQHDAPV  130 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECSSCE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC---ceeeccccCce
Confidence            58999999999999999987 5554 677788899999999999876665 568899999998764   23355789999


Q ss_pred             EEEEE--eeCCCEEEEecCCCcEEEEeCCCCeeEEe--------------------------------------------
Q 042260           82 MAVGF--QCDGNWMYSGSEDGTVKIWDLRAPVCQME--------------------------------------------  115 (174)
Q Consensus        82 ~~~~~--~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--------------------------------------------  115 (174)
                      .+++|  ++++++|++++.||.|++||+++......                                            
T Consensus       131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  210 (368)
T 3mmy_A          131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP  210 (368)
T ss_dssp             EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCS
T ss_pred             EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccc
Confidence            99999  78899999999999999999875421100                                            


Q ss_pred             ----------------------------------------------ec-ccC------------cEEEEEEccCCCEEEE
Q 042260          116 ----------------------------------------------YE-SRA------------AVNTVVLHPNQTELIS  136 (174)
Q Consensus       116 ----------------------------------------------~~-~~~------------~v~~~~~~~~~~~l~s  136 (174)
                                                                    +. +..            +|.+++|+|+++.|++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  290 (368)
T 3mmy_A          211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT  290 (368)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEE
T ss_pred             ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEE
Confidence                                                          00 011            5999999999999999


Q ss_pred             eeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          137 GDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      |+.||.|++||++++++...+.......+-+-++|+
T Consensus       291 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  326 (368)
T 3mmy_A          291 VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN  326 (368)
T ss_dssp             EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred             EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence            999999999999999998888765666666666654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.7e-25  Score=170.37  Aligned_cols=147  Identities=12%  Similarity=0.180  Sum_probs=120.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC-CCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS-PQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~-~~~~~~~~~~~~   79 (174)
                      ++.+|++|+.|++|++||+.++  +.+..+..|...|.+++|+|++.++++ +.|+.+++||+.+++ ......+..|..
T Consensus        22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~  101 (377)
T 3dwl_C           22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR  101 (377)
T ss_dssp             SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred             CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence            5678999999999999999988  677888889899999999998876665 568899999998875 445666778999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .+.+++|++++++|++++.|+.|++||++...   +...+.  +...|.+++|+|+++.|++++.|+.|++||++.
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence            99999999999999999999999999998765   233443  678899999999999999999999999999963

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=3.2e-24  Score=165.23  Aligned_cols=151  Identities=14%  Similarity=0.223  Sum_probs=128.5

Q ss_pred             EEEEeeCCCcEEEEECCCCc----eeEEeecCCCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCCC-----CCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGR----CYRTIQYPDSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSSP-----QPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~-----~~~~~~~   75 (174)
                      ++++++.||.|++||+....    .+..+..|...|.+++|+| ++.++++ +.|+.|++||+.+++.     .+...+.
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~  128 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE  128 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence            45568999999999986542    3445667888999999999 7776665 4688999999987643     4566778


Q ss_pred             cCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           76 QHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .|...|.+++|++++ +++++++.|+.|++||+++......+   .+...|.+++|+|+++.|++++.|+.|++||++++
T Consensus       129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            899999999999998 69999999999999999998887776   36778999999999999999999999999999998


Q ss_pred             cceeec
Q 042260          152 SCSCEL  157 (174)
Q Consensus       152 ~~~~~~  157 (174)
                      ++...+
T Consensus       209 ~~~~~~  214 (402)
T 2aq5_A          209 TVVAEK  214 (402)
T ss_dssp             EEEEEE
T ss_pred             ceeeee
Confidence            887776

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.2e-24  Score=164.05  Aligned_cols=143  Identities=16%  Similarity=0.239  Sum_probs=111.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEE-------------ecCCcEEEEEcCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAA-------------AGNPHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~-------------~~d~~i~i~d~~~~~   67 (174)
                      ++.+|++||.|++|||||+++|++++++..+.   ..+..++|+|++.++++             +.|+.+++||..+++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            45689999999999999999999999997643   35677889999886632             347789999998764


Q ss_pred             CCCeEE---eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCc-EEEEEEccCCCEEEEeeCCCc
Q 042260           68 PQPVMS---YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAA-VNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        68 ~~~~~~---~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      ......   ..+|...+.+..++  +.++++|+.|++|+|||+++.++..++. +... +..++|+|+++.|++|+.|++
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            322211   13566665544443  8899999999999999999999888885 4444 446899999999999999999


Q ss_pred             EEEEeC
Q 042260          143 IRVWDL  148 (174)
Q Consensus       143 i~iwd~  148 (174)
                      ||+||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=1.2e-23  Score=157.10  Aligned_cols=163  Identities=15%  Similarity=0.333  Sum_probs=134.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCcee---EEee--cCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCY---RTIQ--YPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +++.+|++++ |++|++||+.+++..   ..+.  .+...|.+++|+|++.++++ +.++.+++||++.++......+..
T Consensus        61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            3566888888 999999999877643   3333  57788999999999876655 568899999998876555666778


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      |...+.+++|+++++++++++.||.|++||+++......+. +...|.+++|+|+++.|++++.|+.|++||++.++...
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  219 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ  219 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe
Confidence            89999999999999999999999999999999988777665 57789999999999999999999999999999988877


Q ss_pred             ecCcccceeEE
Q 042260          156 ELGLQYGLRTF  166 (174)
Q Consensus       156 ~~~~~~~~~~~  166 (174)
                      .+.....+...
T Consensus       220 ~~~~~~~v~~~  230 (337)
T 1gxr_A          220 QHDFTSQIFSL  230 (337)
T ss_dssp             EEECSSCEEEE
T ss_pred             eecCCCceEEE
Confidence            76655544443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=4.5e-25  Score=172.04  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=118.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCcee--EEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +.+||+|+.||+|+|||+.+++..  ..+..|...|.+++|+| ++.+| +++.|+.|++||++.+..........+...
T Consensus       132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  211 (435)
T 4e54_B          132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW  211 (435)
T ss_dssp             TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence            458999999999999999877654  34456888999999998 45555 456789999999976532222222233456


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCcceee
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +.+++|++++++|++|+.||.|++||++.........+...|.+++|+|+++ .+++|+.|+.|++||++..+....
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            7889999999999999999999999998654433335678899999999876 677899999999999998765433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-24  Score=163.41  Aligned_cols=167  Identities=11%  Similarity=0.109  Sum_probs=129.6

Q ss_pred             CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-------CCCCeEEe
Q 042260            2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-------SPQPVMSY   74 (174)
Q Consensus         2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~   74 (174)
                      ..++.+|++|+.||+|++||+++++.+..+.  ...|..+.++|.  +++++.|+.+++|+....       ....+...
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            3467889999999999999999999888776  345777788887  666778899999976521       11112222


Q ss_pred             -ecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           75 -DQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        75 -~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                       ..|...+.+++|+|  +++++++++.||.|++||+++..+....  .+...+.+++|+|++..|++|+.||.|++||++
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence             25668899999999  9999999999999999999988775544  334579999999999999999999999999999


Q ss_pred             CCcce-eecCc-ccceeEEEEEeec
Q 042260          150 ANSCS-CELGL-QYGLRTFLFYHQD  172 (174)
Q Consensus       150 ~~~~~-~~~~~-~~~~~~~~~~~~~  172 (174)
                      ++++. ..+.. +.....-+-++|+
T Consensus       201 ~~~~~~~~~~~~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          201 SPDQASSRFPVDEEAKIKEVKFADN  225 (343)
T ss_dssp             CTTSCCEECCCCTTSCEEEEEECTT
T ss_pred             CCCCCccEEeccCCCCEEEEEEeCC
Confidence            98877 66655 3444555555543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.4e-24  Score=160.49  Aligned_cols=170  Identities=17%  Similarity=0.250  Sum_probs=134.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      +++.+|++|+.|++|++||+.  +++.+..+..|...|.+++|+++  +.+++ ++.|+.|++||+++++......+..|
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  100 (379)
T 3jrp_A           21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH  100 (379)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence            356689999999999999987  56677788889899999999865  56555 55789999999988754456667789


Q ss_pred             CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee---EEeecccCcEEEEEEcc-------------CCCEEEEeeC
Q 042260           78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC---QMEYESRAAVNTVVLHP-------------NQTELISGDQ  139 (174)
Q Consensus        78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~  139 (174)
                      ...+.+++|+++  ++++++++.|+.|++||++....   .....+...|.+++|+|             ++..|++++.
T Consensus       101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred             CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence            999999999999  99999999999999999987632   22235678899999999             6899999999


Q ss_pred             CCcEEEEeCCCCcce----eecCcccceeEEEEEeec
Q 042260          140 NGNIRVWDLTANSCS----CELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       140 d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~  172 (174)
                      |+.|++||++.+...    ..+..+.....-+-++|+
T Consensus       181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence            999999999976543    333333333444444543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.9e-23  Score=169.38  Aligned_cols=151  Identities=18%  Similarity=0.278  Sum_probs=125.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEecCC-----cEEEEEcCCCCCCCeEEee
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAAGNP-----HIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~~   75 (174)
                      +++.+||||+.|++|+|||+.+++  ....+..|...|.+++|+|++..+++++++     .+++||.  ++  ....+.
T Consensus        69 pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~--~~~~l~  144 (611)
T 1nr0_A           69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GT--SNGNLT  144 (611)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CC--BCBCCC
T ss_pred             CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CC--Ccceec
Confidence            467799999999999999987654  345677788899999999999888765432     4666663  32  234467


Q ss_pred             cCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           76 QHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      +|...|.+++|+|++. .|++|+.|+.|++||.+..++..++. |...|.+++|+|+++.|++|+.|++|++||+.++++
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            8999999999999986 69999999999999998877776664 667899999999999999999999999999998887


Q ss_pred             eeec
Q 042260          154 SCEL  157 (174)
Q Consensus       154 ~~~~  157 (174)
                      ...+
T Consensus       225 ~~~~  228 (611)
T 1nr0_A          225 TGVF  228 (611)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            7655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=6.6e-24  Score=162.19  Aligned_cols=160  Identities=18%  Similarity=0.221  Sum_probs=125.9

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .+|++|+.|++|++||+.+++....+.  .|...|.+++|+| ++.+++ ++.|+.+++||++............|...+
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  166 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY  166 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence            689999999999999999988877765  4788999999999 555554 557899999999854222222223345789


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC----Ccceee
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA----NSCSCE  156 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~  156 (174)
                      .+++|++++++|++|+.|+.|++||++.........+...|.+++|+|+++ .+++++.|+.|++||+++    ..+...
T Consensus       167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  246 (383)
T 3ei3_B          167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE  246 (383)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence            999999999999999999999999996544333335678999999999998 899999999999999998    555555


Q ss_pred             cCcccceeE
Q 042260          157 LGLQYGLRT  165 (174)
Q Consensus       157 ~~~~~~~~~  165 (174)
                      +.+...+..
T Consensus       247 ~~~~~~v~~  255 (383)
T 3ei3_B          247 MPHEKPVNA  255 (383)
T ss_dssp             EECSSCEEE
T ss_pred             ecCCCceEE
Confidence            544443333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=5e-23  Score=153.64  Aligned_cols=149  Identities=17%  Similarity=0.315  Sum_probs=130.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+|++++.|++|++||+++++  ....+..+...+.+++|+|++.++++ +.++.+++||++++  .....+..|...
T Consensus       108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~  185 (337)
T 1gxr_A          108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDG  185 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeeecccCc
Confidence            45689999999999999999887  55667778888999999998876655 56889999999876  445567789999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +.+++|+++++++++++.|+.|++||+++......+.+..++.+++|+|+++.+++++.|+.|++||++.+...
T Consensus       186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence            99999999999999999999999999999988888888889999999999999999999999999999987654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.2e-23  Score=168.13  Aligned_cols=165  Identities=23%  Similarity=0.389  Sum_probs=133.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++++.|++|++||. +++.+..+..|...|.+++|+|++.++++ +.|+.+++||...   .....+..|...+
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~~~~v  470 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSV  470 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCCCCCE
Confidence            35668999999999999995 57888888889999999999999887765 5688999999743   3455677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+++|+|++++|++++.|+.|++||...........+...|.+++|+|+++.|++++.||.|++||. ++++...+..+.
T Consensus       471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~  549 (577)
T 2ymu_A          471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  549 (577)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence            9999999999999999999999999765433333356788999999999999999999999999996 566666665444


Q ss_pred             ceeEEEEEeec
Q 042260          162 GLRTFLFYHQD  172 (174)
Q Consensus       162 ~~~~~~~~~~~  172 (174)
                      ..+.-+-++||
T Consensus       550 ~~v~~~~fs~d  560 (577)
T 2ymu_A          550 SSVWGVAFSPD  560 (577)
T ss_dssp             SCEEEEEECTT
T ss_pred             CCEEEEEEcCC
Confidence            44444444443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=3.5e-24  Score=165.10  Aligned_cols=165  Identities=17%  Similarity=0.361  Sum_probs=130.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec---CCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ---HTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~---~~~   79 (174)
                      ++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||+++++  ....+..   +..
T Consensus       150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~  227 (420)
T 3vl1_A          150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHD  227 (420)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTC
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCC
Confidence            4668999999999999999999999999999999999999999876655 568899999998763  3334432   344


Q ss_pred             CEEEEEE---------------------eeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCC-EEE
Q 042260           80 NVMAVGF---------------------QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQT-ELI  135 (174)
Q Consensus        80 ~v~~~~~---------------------~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~  135 (174)
                      .+.++++                     +++++++++|+.||.|++||+++......+.  +...|.+++|+|+++ .|+
T Consensus       228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred             CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence            5555554                     6788999999999999999999877665553  467899999999998 999


Q ss_pred             EeeCCCcEEEEeCCCCcc-eeecCc-ccceeEEEEEe
Q 042260          136 SGDQNGNIRVWDLTANSC-SCELGL-QYGLRTFLFYH  170 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~  170 (174)
                      +|+.||.|++||++++.+ ...+.. .......++++
T Consensus       308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~  344 (420)
T 3vl1_A          308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA  344 (420)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE
T ss_pred             EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC
Confidence            999999999999998765 444432 34444444443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=5.6e-24  Score=158.71  Aligned_cols=150  Identities=23%  Similarity=0.363  Sum_probs=122.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCC---------ceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCC---
Q 042260            5 SVILATASYDKTIKFWEAKSG---------RCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQ---   69 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~---   69 (174)
                      +.+|++|+.|++|++||++++         +.+..+..|...|.+++|+|+  +.+++ ++.|+.+++||+++++..   
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence            678999999999999999887         457777788889999999998  77655 457889999998754321   


Q ss_pred             -------------------------------------------------------CeEEeecCCCCEEEEEEeeCC----
Q 042260           70 -------------------------------------------------------PVMSYDQHTNNVMAVGFQCDG----   90 (174)
Q Consensus        70 -------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~----   90 (174)
                                                                             ....+..|...+.+++|++++    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence                                                                   123345688899999999998    


Q ss_pred             CEEEEecCCCcEEEEeCCCC----------------------------------------------eeEEee-cccCcEE
Q 042260           91 NWMYSGSEDGTVKIWDLRAP----------------------------------------------VCQMEY-ESRAAVN  123 (174)
Q Consensus        91 ~~l~t~~~dg~v~iwd~~~~----------------------------------------------~~~~~~-~~~~~v~  123 (174)
                      ++|++|+.||.|++||++..                                              .....+ .+...|.
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence            89999999999999998763                                              223333 3567899


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          124 TVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      +++|+|+++.|++++.||.|++||++.+...
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            9999999999999999999999999987543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=7.9e-24  Score=169.25  Aligned_cols=140  Identities=26%  Similarity=0.488  Sum_probs=121.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.+|++++.|++|++||. +++.+..+..|...|.+++|+|++.+++++ .|+.|++||.. +  .....+.+|...|.
T Consensus       437 d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~--~~~~~~~~h~~~v~  512 (577)
T 2ymu_A          437 DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVR  512 (577)
T ss_dssp             TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S--CEEEEEECCSSCEE
T ss_pred             CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C--CEEEEEeCCCCCEE
Confidence            4668999999999999995 567888888899999999999999887764 67889999963 3  44566788999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      +++|+|++++|++++.|+.|++||...........|..+|.+++|+|+++.|++++.|++|++||
T Consensus       513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999975544333335778999999999999999999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=9.7e-24  Score=159.83  Aligned_cols=147  Identities=12%  Similarity=0.202  Sum_probs=124.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +++.+|++|+.|++|++||+.+++  .+..+..|...|.+++|+|++.++++ +.|+.+++||+++++.........|..
T Consensus        18 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~   97 (372)
T 1k8k_C           18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR   97 (372)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC
Confidence            356789999999999999999887  78888889899999999998887665 568899999997765444444567889


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee---EEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC---QMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.+++|+++++++++++.|+.|++||++....   ...+  .+...|.+++|+|+++.|++++.|+.|++||++
T Consensus        98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C           98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            999999999999999999999999999987541   2222  356789999999999999999999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=2.2e-23  Score=156.12  Aligned_cols=144  Identities=19%  Similarity=0.403  Sum_probs=119.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ..++++++.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||+++.  ..+..+. +...+..
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~-~~~~v~~  261 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLD-GGDIINA  261 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEE-CSSCEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeec-CCceEEe
Confidence            457899999999999999999999999989999999999999887765 57889999999876  3344444 4567999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +.|++++.+ ++++.|+.|++||++.......+          .+...|.+++|+|+++.|++|+.||.|++||+++++
T Consensus       262 ~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          262 LCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999987765 55667999999999987665443          245679999999999999999999999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=1.3e-23  Score=161.90  Aligned_cols=148  Identities=20%  Similarity=0.326  Sum_probs=126.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCC-ceE-EEecCCcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNK-HYL-AAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      ++.+|++|+.|++|++||+.++       +.+..+..|...|.+++|+|++ .++ +++.|+.|++||++++  .....+
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~  170 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--AAVLTL  170 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--EEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--CccEEE
Confidence            4668999999999999999887       5677888899999999999987 455 4567899999999876  445556


Q ss_pred             --ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccC-cEEEEEEccCCCEEEEe---eCCCcEEEE
Q 042260           75 --DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRA-AVNTVVLHPNQTELISG---DQNGNIRVW  146 (174)
Q Consensus        75 --~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~-~v~~~~~~~~~~~l~s~---~~d~~i~iw  146 (174)
                        ..|...+.+++|++++++|++++.|+.|++||+++......+  .+.. .+.+++|+|++..|++|   +.|+.|++|
T Consensus       171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw  250 (402)
T 2aq5_A          171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW  250 (402)
T ss_dssp             CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred             ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence              679999999999999999999999999999999998877766  2333 48999999999999998   789999999


Q ss_pred             eCCCCcc
Q 042260          147 DLTANSC  153 (174)
Q Consensus       147 d~~~~~~  153 (174)
                      |++....
T Consensus       251 d~~~~~~  257 (402)
T 2aq5_A          251 DTKHLEE  257 (402)
T ss_dssp             ETTBCSS
T ss_pred             cCccccC
Confidence            9998665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=2.2e-23  Score=162.95  Aligned_cols=164  Identities=18%  Similarity=0.294  Sum_probs=135.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +.+|++|+.|++|++||+++++.+..+..|...|.+++|++++.+++++.|+.+++||++++  .....+..|...+.++
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l  209 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCL  209 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEE
Confidence            45799999999999999999999999999999999999999886677778999999999876  4566677899999999


Q ss_pred             EEee--CCCEEEEecCCCcEEEEeCCCCeeE-----------------------Ee-ecccCcEEEEEEccCCCEEEEee
Q 042260           85 GFQC--DGNWMYSGSEDGTVKIWDLRAPVCQ-----------------------ME-YESRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        85 ~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~-----------------------~~-~~~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      ++.+  +++++++|+.|+.|++||++.....                       .. ..+...+.++  +++++.+++|+
T Consensus       210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  287 (464)
T 3v7d_B          210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS  287 (464)
T ss_dssp             EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred             EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence            9984  7789999999999999999865421                       11 2344556665  57889999999


Q ss_pred             CCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          139 QNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      .|+.|++||++++++...+..+.....-+.++++
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  321 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE  321 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence            9999999999999998887655555555555543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=1.8e-23  Score=159.85  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=127.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec---C---CCCeEEEEEcCCCceEEEe-cC---CcEEEEEcCCCCCCCeEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY---P---DSQVNRLEITPNKHYLAAA-GN---PHIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~-~d---~~i~i~d~~~~~~~~~~~   73 (174)
                      ++ ++++++.|+.|++||+++++.+..+..   |   ...+.+++|+|++.+++++ .|   +.|++||++++  ..+..
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~  273 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGS  273 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEE
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccce
Confidence            45 899999999999999999999999988   7   8899999999998877655 56   78999999876  44556


Q ss_pred             eec-------------CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-------c---------------
Q 042260           74 YDQ-------------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-------S---------------  118 (174)
Q Consensus        74 ~~~-------------~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------~---------------  118 (174)
                      +..             |...+.+++|++++++|++++.||.|++||+++......+.       +               
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          274 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence            666             89999999999999999999999999999999988777765       3               


Q ss_pred             cCcEEEEEEccCC----------CEEEEeeCCCcEEEEeCCCC
Q 042260          119 RAAVNTVVLHPNQ----------TELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       119 ~~~v~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ..+|.+++|+|++          +.|++++.||.|++||++++
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            6789999999998          79999999999999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-23  Score=157.37  Aligned_cols=148  Identities=20%  Similarity=0.366  Sum_probs=126.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+|++|+.|++|++||+++++  .+..+..+...|.+++|+|+  +.+++ ++.|+.+++||++.........+..|..
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            6789999999999999999987  66777778889999999998  66555 5578899999998876556666778999


Q ss_pred             CEEEEEEee-------------CCCEEEEecCCCcEEEEeCCCCe----eEEee-cccCcEEEEEEccC---CCEEEEee
Q 042260           80 NVMAVGFQC-------------DGNWMYSGSEDGTVKIWDLRAPV----CQMEY-ESRAAVNTVVLHPN---QTELISGD  138 (174)
Q Consensus        80 ~v~~~~~~~-------------~~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~---~~~l~s~~  138 (174)
                      .+.+++|+|             +++++++++.|+.|++||++...    ....+ .+...|.+++|+|+   ++.|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            999999999             69999999999999999997643    22333 35678999999999   89999999


Q ss_pred             CCCcEEEEeCCCCc
Q 042260          139 QNGNIRVWDLTANS  152 (174)
Q Consensus       139 ~d~~i~iwd~~~~~  152 (174)
                      .||.|++||++.+.
T Consensus       229 ~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TTSCEEEEEESSTT
T ss_pred             CCCEEEEEeCCCCC
Confidence            99999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=1e-23  Score=161.21  Aligned_cols=153  Identities=14%  Similarity=0.302  Sum_probs=129.4

Q ss_pred             CCcEE-EEEeeCCCcEEEEECCC------CceeE-----Eee-------cCCCCeEEEEEcCCCceEEE-ecCCcEEEEE
Q 042260            3 QPSVI-LATASYDKTIKFWEAKS------GRCYR-----TIQ-------YPDSQVNRLEITPNKHYLAA-AGNPHIRLFD   62 (174)
Q Consensus         3 ~~~~~-l~s~s~D~~v~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d   62 (174)
                      +++.. |++++.|+.|++||+++      ++.+.     .+.       .+...+.+++|+|++ ++++ +.|+.+++||
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            35667 99999999999999998      76665     663       367789999999998 6655 4678999999


Q ss_pred             cCCCCCCCeEEeec---C---CCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCCeeEEeec--------------cc
Q 042260           63 VNSSSPQPVMSYDQ---H---TNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAPVCQMEYE--------------SR  119 (174)
Q Consensus        63 ~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~--------------~~  119 (174)
                      +++.  ..+..+..   |   ...+.+++|++++++|++++.|   +.|++||+++......+.              +.
T Consensus       214 ~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          214 LSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             TTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             CCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            9876  45566667   8   8999999999999999999999   999999999887776664              57


Q ss_pred             CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          120 AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       120 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ..|.+++|+|+++.|++++.|+.|++||+++.++...+.
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            889999999999999999999999999999998887776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=4e-23  Score=156.43  Aligned_cols=169  Identities=14%  Similarity=0.115  Sum_probs=135.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCC--CeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQ--PVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~   78 (174)
                      ++.+|++++.|++|++||+++++.....  ..+...|.++.|+|++.++++ +.++.+++||++.....  .......|.
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  142 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  142 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence            4668999999999999999888765544  457778999999999877665 46889999999876421  122235678


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCC------------------CCeeEEee-cccCcEEEEEEccCCCEEEEeeC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLR------------------APVCQMEY-ESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      ..+.+++|+++++++++++.|+.|++||++                  .......+ .+...|.+++|+|+++.|++++.
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  222 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  222 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence            999999999999999999999999999964                  44555555 45678999999999999999999


Q ss_pred             CCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          140 NGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      |+.|++||++++++...+........-+.++++
T Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  255 (372)
T 1k8k_C          223 DSTVCLADADKKMAVATLASETLPLLAVTFITE  255 (372)
T ss_dssp             TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred             CCEEEEEECCCCceeEEEccCCCCeEEEEEecC
Confidence            999999999999888887655544444555543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=9.8e-24  Score=163.66  Aligned_cols=149  Identities=19%  Similarity=0.397  Sum_probs=119.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc-----------eeEEeecCC------------CCeEEEEEcCCC---ceEEEecCCc
Q 042260            4 PSVILATASYDKTIKFWEAKSGR-----------CYRTIQYPD------------SQVNRLEITPNK---HYLAAAGNPH   57 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~---~~~~~~~d~~   57 (174)
                      ++.+|++|+.||.|++||+.+++           ....+..|.            ..|.+++|+|++   .+++++.|+.
T Consensus        39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~  118 (447)
T 3dw8_B           39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT  118 (447)
T ss_dssp             SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence            56789999999999999998876           467777787            789999999985   4566678999


Q ss_pred             EEEEEcCCCCCC-------------------------------------CeEE-eecCCCCEEEEEEeeCCCEEEEecCC
Q 042260           58 IRLFDVNSSSPQ-------------------------------------PVMS-YDQHTNNVMAVGFQCDGNWMYSGSED   99 (174)
Q Consensus        58 i~i~d~~~~~~~-------------------------------------~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d   99 (174)
                      |++||+..+...                                     +... ...|...|.+++|++++++|++| .|
T Consensus       119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d  197 (447)
T 3dw8_B          119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DD  197 (447)
T ss_dssp             EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CS
T ss_pred             EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CC
Confidence            999998653210                                     0011 25689999999999999999999 79


Q ss_pred             CcEEEEeCCC-CeeEEe-------e-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcc
Q 042260          100 GTVKIWDLRA-PVCQME-------Y-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       100 g~v~iwd~~~-~~~~~~-------~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      +.|++||++. ..+...       + .+...|.+++|+|++ +.|++|+.||.|++||++++..
T Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999984 333332       1 456789999999998 8999999999999999998876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=5.8e-23  Score=156.47  Aligned_cols=148  Identities=16%  Similarity=0.252  Sum_probs=118.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-----------------------------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-----------------------------------   48 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------------------   48 (174)
                      ++.++++|+.|++|++||.++++.+..+.. ...|.++.++++..                                   
T Consensus        70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~  148 (355)
T 3vu4_A           70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNG  148 (355)
T ss_dssp             SSEEEEECSSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETT
T ss_pred             CCEEEEEECCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEcc
Confidence            344557889999999999999999888874 45788888876421                                   


Q ss_pred             eEE---EecCCcEEEEEcCCCCC-------------CC-eEEeecCCCCEEEEEEeeCCCEEEEecCCCc-EEEEeCCCC
Q 042260           49 YLA---AAGNPHIRLFDVNSSSP-------------QP-VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-VKIWDLRAP  110 (174)
Q Consensus        49 ~~~---~~~d~~i~i~d~~~~~~-------------~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~  110 (174)
                      .++   ++.++.|++||+++++.             .+ ...+.+|...|.+++|+|++++|++|+.|++ |++||+++.
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            111   13456778888765420             11 5567889999999999999999999999998 999999998


Q ss_pred             eeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          111 VCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       111 ~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .+...+.   +...|.+++|+|+++.|++++.|++|++||++.+.
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            8887776   77899999999999999999999999999998653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=6.8e-23  Score=153.42  Aligned_cols=160  Identities=21%  Similarity=0.323  Sum_probs=125.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc-----eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC----------
Q 042260            5 SVILATASYDKTIKFWEAKSGR-----CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP----------   68 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~----------   68 (174)
                      +.+|+|||.|++|++||+.+++     +...+..|...|.++.|+|++.++++ +.|+.+++|+......          
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence            5689999999999999987654     45667778889999999999887665 4677788887643210          


Q ss_pred             -------------------------------CCeEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260           69 -------------------------------QPVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQME  115 (174)
Q Consensus        69 -------------------------------~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~  115 (174)
                                                     ........|...+..++|.++  ..++++++.|+.|++||++.......
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence                                           001112346677888888765  45789999999999999999887766


Q ss_pred             ec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccccee
Q 042260          116 YE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR  164 (174)
Q Consensus       116 ~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  164 (174)
                      +. +..+|.+++|+|+++.|++|+.|+.|++||++..++...+.....+.
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~  260 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN  260 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE
Confidence            64 57789999999999999999999999999999998887776554443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.7e-24  Score=178.49  Aligned_cols=154  Identities=13%  Similarity=0.242  Sum_probs=124.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCcee----EEee-------cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC--
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCY----RTIQ-------YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP--   68 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--   68 (174)
                      +++.+|+||+.|++||+||+.+++..    ....       .|...|.+++|+|++.+++++ .|+.|++||+.+++.  
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            35789999999999999999887431    1111       567789999999999887765 688999999976521  


Q ss_pred             -----------------------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeC
Q 042260           69 -----------------------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL  107 (174)
Q Consensus        69 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~  107 (174)
                                                               .++..+.+|...|.+++|+|+| +||+|+.|++|++||+
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence                                                     1245677899999999999999 9999999999999999


Q ss_pred             CCCeeEEe-----e--cccCcEEEEEEc-----cCC---CEEEEeeCCCcEEEEeC---CCCcceeec
Q 042260          108 RAPVCQME-----Y--ESRAAVNTVVLH-----PNQ---TELISGDQNGNIRVWDL---TANSCSCEL  157 (174)
Q Consensus       108 ~~~~~~~~-----~--~~~~~v~~~~~~-----~~~---~~l~s~~~d~~i~iwd~---~~~~~~~~~  157 (174)
                      +.+..+..     +  .|...|.+++|+     |++   ..|++|+.|++|++||+   .++++..++
T Consensus       604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~  671 (902)
T 2oaj_A          604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL  671 (902)
T ss_dssp             TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence            98876531     2  356679999999     885   78999999999999999   677766554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=3.3e-24  Score=160.82  Aligned_cols=146  Identities=23%  Similarity=0.329  Sum_probs=118.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCC-CCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~   78 (174)
                      +.+|+||+.|++|++||+++++  ....+..|...|.+++|+|+  +.+++ ++.|+.+++||++.... .....+..|.
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT  150 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence            5689999999999999999874  56667778889999999997  55555 45788999999976531 1123345788


Q ss_pred             CCEEEEEEeeC-----------------CCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCC----CE
Q 042260           79 NNVMAVGFQCD-----------------GNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQ----TE  133 (174)
Q Consensus        79 ~~v~~~~~~~~-----------------~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~----~~  133 (174)
                      ..+.+++|+|+                 +++|++|+.|+.|++||++..   .....+ .|...|.+++|+|++    ..
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            88999999886                 478999999999999999754   334444 466789999999986    78


Q ss_pred             EEEeeCCCcEEEEeCCC
Q 042260          134 LISGDQNGNIRVWDLTA  150 (174)
Q Consensus       134 l~s~~~d~~i~iwd~~~  150 (174)
                      |++++.|++|++||++.
T Consensus       231 las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEEETTCEEEEEECSS
T ss_pred             EEEEcCCCeEEEEEccC
Confidence            99999999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=7.2e-23  Score=156.40  Aligned_cols=150  Identities=21%  Similarity=0.301  Sum_probs=127.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++.+|++++.|++|++||+++ +.+..+..+   ...|.+++|+|++.++++ +.|+.+++||++.   .....+..|..
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h~~  205 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECSSS
T ss_pred             CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccCCC
Confidence            457899999999999999985 555555443   367999999999887765 4688999999942   45666778999


Q ss_pred             CEEEEEEeeCCC-EEEEecCCCcEEEEeCCC----CeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRA----PVCQMEYESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      .+.+++|+++++ ++++++.|+.|++||+++    ..+...+.+...|.+++|+| ++..|++++.|+.|++||+++..+
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            999999999999 999999999999999987    55666677888999999999 999999999999999999998776


Q ss_pred             eeec
Q 042260          154 SCEL  157 (174)
Q Consensus       154 ~~~~  157 (174)
                      ...+
T Consensus       286 ~~~~  289 (383)
T 3ei3_B          286 PDQI  289 (383)
T ss_dssp             CSEE
T ss_pred             cccc
Confidence            5443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=2.3e-22  Score=157.15  Aligned_cols=161  Identities=25%  Similarity=0.444  Sum_probs=133.5

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC--CCceE-EEecCCcEEEEEcCCCCCCC-------------
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP--NKHYL-AAAGNPHIRLFDVNSSSPQP-------------   70 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-~~~~d~~i~i~d~~~~~~~~-------------   70 (174)
                      .|++|+.|++|++||+++++.+..+..|...|.++++++  ++.++ +++.|+.+++||++......             
T Consensus       175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            799999999999999999999999998999999999984  54554 45678999999998764321             


Q ss_pred             --------eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260           71 --------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        71 --------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                              ...+..|...+.++  +++++++++|+.|+.|++||+++..+...+. +...|.+++|+|+++.+++|+.||
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg  332 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT  332 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                    33456777777776  5679999999999999999999988877764 578899999999999999999999


Q ss_pred             cEEEEeCCCCcceeecCcccceeEEEEE
Q 042260          142 NIRVWDLTANSCSCELGLQYGLRTFLFY  169 (174)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (174)
                      .|++||++++++...+..+......+.+
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            9999999999988887655444444333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-23  Score=162.94  Aligned_cols=152  Identities=16%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-cCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD-QHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~   79 (174)
                      ++.+|++|+.|++|++||+++++.+..+..  |...|.+++|+|++.++++ +.|+.|++||++.+  .++..+. .|..
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~  258 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLIRSWSFGDHA  258 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEEBCTTCE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEEEEEecCCCC
Confidence            478999999999999999999999999987  6789999999999887665 57888999999875  3444443 5677


Q ss_pred             CEEEEEEe----eCCCEEEEecCCCcEEEEeCCCCeeEEeec---------------------------ccCcEEEEEEc
Q 042260           80 NVMAVGFQ----CDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---------------------------SRAAVNTVVLH  128 (174)
Q Consensus        80 ~v~~~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---------------------------~~~~v~~~~~~  128 (174)
                      .+.++++.    ++++++++|+.||.|++||+++..+...+.                           +...|.+++|+
T Consensus       259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            89999665    467799999999999999999887665543                           34558889999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          129 PNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       129 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                       +++.|++|+.|+.|++||++++++...+.
T Consensus       339 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          339 -NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             -TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             -CceEEEecCCCCeEEEEECCCcccceEEe
Confidence             67899999999999999999988876654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6e-23  Score=155.28  Aligned_cols=147  Identities=12%  Similarity=0.145  Sum_probs=118.4

Q ss_pred             EEEeeCCCcEEEEECC---------CCceeEEee-cCCCCeEEEEEcC--CCceEE-EecCCcEEEEEcCCCCCCCeEEe
Q 042260            8 LATASYDKTIKFWEAK---------SGRCYRTIQ-YPDSQVNRLEITP--NKHYLA-AAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      +++++.|++|++|+..         +++.+.... .+...|.+++|+|  ++.+++ ++.|+.+++||+++++.  ....
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~  165 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVH  165 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEE
Confidence            8899999999999765         455455554 4556799999999  887776 45789999999987643  3323


Q ss_pred             -ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           75 -DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        75 -~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                       ..+...+.+++|+|++.++++|+.||.|++||+++.... ..+.  |..+|.+++|+|++..|++++. +.|++||++.
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~  244 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRK  244 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCC
Confidence             345567999999999999999999999999999987765 4443  5789999999999999999994 4999999999


Q ss_pred             Ccceeec
Q 042260          151 NSCSCEL  157 (174)
Q Consensus       151 ~~~~~~~  157 (174)
                      ..+...+
T Consensus       245 ~~~~~~~  251 (343)
T 3lrv_A          245 DVGTLAY  251 (343)
T ss_dssp             STTCBSS
T ss_pred             CCcceee
Confidence            8776543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=1e-23  Score=159.05  Aligned_cols=145  Identities=17%  Similarity=0.313  Sum_probs=124.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCCCCCeEEe---ecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSSPQPVMSY---DQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~---~~~~~   79 (174)
                      +.+|++|+.|++|++||+++++.+..+..|...|.+++|+| ++.++++ +.|+.|++||++++  .....+   ..|..
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~  162 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--TLVAIFGGVEGHRD  162 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--EEEEEECSTTSCSS
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--eEEEEecccccccC
Confidence            67899999999999999999999999998999999999999 7776655 56889999999876  334444   57899


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----------------------------ccCcEEEEEEccC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----------------------------SRAAVNTVVLHPN  130 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~  130 (174)
                      .+.+++|++++++|++++.||.|++||++.......+.                             +...|.+++|+  
T Consensus       163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            99999999999999999999999999998754332221                             66789999998  


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCcc
Q 042260          131 QTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ++.+++++.|+.|++||++...+
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTC
T ss_pred             CCEEEEEecCCEEEEEeCCCccc
Confidence            67999999999999999998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.5e-22  Score=154.82  Aligned_cols=161  Identities=16%  Similarity=0.284  Sum_probs=132.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      .+++++.|++|++||+.+++....+.. +...|.+++|+|++.+++++ .|+.+++||+.++  .....+..|...+.++
T Consensus       105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCL  182 (401)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEE
T ss_pred             CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEE
Confidence            377889999999999999998877775 67789999999998877654 6889999999876  4456677899999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCC-CeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      +|  +++.+++|+.||.|++||++. ......+ .+...|.+++|+|+++.|++|+.|+.|++||++.+.....+.....
T Consensus       183 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  260 (401)
T 4aez_A          183 SW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA  260 (401)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS
T ss_pred             EE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc
Confidence            99  578999999999999999984 3334333 5678899999999999999999999999999999888877654444


Q ss_pred             eeEEEEEee
Q 042260          163 LRTFLFYHQ  171 (174)
Q Consensus       163 ~~~~~~~~~  171 (174)
                      ...-+-++|
T Consensus       261 ~v~~~~~~p  269 (401)
T 4aez_A          261 AVKAVAWCP  269 (401)
T ss_dssp             CCCEEEECT
T ss_pred             eEEEEEECC
Confidence            444444444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.1e-23  Score=164.25  Aligned_cols=151  Identities=20%  Similarity=0.316  Sum_probs=120.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC--CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+|+|||.|++|++||++++........+  ...+.+++|+|++.+++++ .|+.|++||++..   .+..+..|...
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~  252 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKK  252 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSC
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccce
Confidence            4568999999999999999876443322222  3346789999998877655 6889999999754   23446689999


Q ss_pred             EEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEe----ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           81 VMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQME----YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        81 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      |.+++|+|++. ++++|+.|+.|++||++.......    ..|..+|.+++|+|+++.|++++.|+.|++||++...+..
T Consensus       253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            99999999875 788999999999999987543322    3467789999999999999999999999999999887665


Q ss_pred             ec
Q 042260          156 EL  157 (174)
Q Consensus       156 ~~  157 (174)
                      .+
T Consensus       333 ~~  334 (435)
T 4e54_B          333 GL  334 (435)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.91  E-value=4.4e-23  Score=157.80  Aligned_cols=148  Identities=13%  Similarity=0.202  Sum_probs=117.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCCCceEEEe-cCC----cEEEEEcCCCCCCC--eEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPNKHYLAAA-GNP----HIRLFDVNSSSPQP--VMS   73 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~-~d~----~i~i~d~~~~~~~~--~~~   73 (174)
                      +++.+|++++.| .+++|+..+++.+...  ..|...+..++|+|++..++++ .++    .+++|++.......  ...
T Consensus       186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~  264 (365)
T 4h5i_A          186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ  264 (365)
T ss_dssp             TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence            457788888855 5677777777765433  3466779999999998877654 443    46788876543222  234


Q ss_pred             eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      +..|...|.+++|+|+|++||+|+.|+.|+|||+++.+++.++  .|..+|.+++|+|+++.|++|+.|++||+||+...
T Consensus       265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            5678899999999999999999999999999999999888775  36789999999999999999999999999999643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.2e-22  Score=155.13  Aligned_cols=162  Identities=19%  Similarity=0.327  Sum_probs=135.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++.+|++|+.||.|++||+++++.+..+..|...|.++.|++ ..+++++.|+.+++||++... .....+..|...+.+
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~  222 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCG  222 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEE
T ss_pred             CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeE
Confidence            566899999999999999999999999999999999999954 345556678999999998543 345567789999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCC-EEEEee--CCCcEEEEeCCCCcceeecCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQT-ELISGD--QNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ++|++++++|++|+.|+.|++||+++......+ .+...|.+++|+|++. .+++++  .|+.|++||++++.+...+..
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA  302 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            999999999999999999999999988777666 4678899999999765 555654  799999999999988877765


Q ss_pred             ccceeEEE
Q 042260          160 QYGLRTFL  167 (174)
Q Consensus       160 ~~~~~~~~  167 (174)
                      ...+....
T Consensus       303 ~~~v~~~~  310 (401)
T 4aez_A          303 GSQVTSLI  310 (401)
T ss_dssp             SSCEEEEE
T ss_pred             CCcEEEEE
Confidence            55544433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.5e-23  Score=150.85  Aligned_cols=151  Identities=22%  Similarity=0.379  Sum_probs=125.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++..+++++.|+.|++||  .++....+.. +...+..+.|+|++.+++++.++.+++||++++  ..+..+..|...+.
T Consensus       154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~  229 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--DVLRTYEGHESFVY  229 (313)
T ss_dssp             TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEE
T ss_pred             CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--hhhhhhhcCCceEE
Confidence            455789999999999999  4556666665 778899999999988777788999999999876  45666778999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +++|++++ .+++++.||.|++||+++......+. +..+|.+++|+|+++ +++++.||.|++||+++++...+.+..
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~  306 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK  306 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence            99999998 58999999999999999888776664 456899999999998 667999999999999988776655443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.7e-22  Score=158.00  Aligned_cols=154  Identities=15%  Similarity=0.187  Sum_probs=129.2

Q ss_pred             CcEE-EEEeeCCCcEEEEECC--CCceeEEee--cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCC--CeEEee
Q 042260            4 PSVI-LATASYDKTIKFWEAK--SGRCYRTIQ--YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQ--PVMSYD   75 (174)
Q Consensus         4 ~~~~-l~s~s~D~~v~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~--~~~~~~   75 (174)
                      ++.. +++|+.|++|++||+.  +++.+..+.  .+...|.+++|+|++.+++++ .++.+++|++.+....  ....+.
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~  192 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL  192 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence            3444 5999999999999998  888888776  456789999999998776654 6788999999776543  223456


Q ss_pred             cCCCCEEEEEEeeC---CCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           76 QHTNNVMAVGFQCD---GNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        76 ~~~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .|...+.+++|+|+   +++|++|+.|+.|++||+++..+...+  .+...|.+++|+ ++..|++++.|+.|++||+++
T Consensus       193 ~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            78999999999999   999999999999999999987766553  467889999999 999999999999999999999


Q ss_pred             CcceeecC
Q 042260          151 NSCSCELG  158 (174)
Q Consensus       151 ~~~~~~~~  158 (174)
                      +++...+.
T Consensus       272 ~~~~~~~~  279 (450)
T 2vdu_B          272 GKNLSTFD  279 (450)
T ss_dssp             CCEEEEEE
T ss_pred             CcEeeeec
Confidence            98876654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.7e-22  Score=149.91  Aligned_cols=161  Identities=20%  Similarity=0.396  Sum_probs=133.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC-----CcEEEEEcCCCCCC--------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN-----PHIRLFDVNSSSPQ--------   69 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-----~~i~i~d~~~~~~~--------   69 (174)
                      ++.+|++++.|++|++||+++++.+..+. +...+..+.|+|++..++++ .+     +.+++||+......        
T Consensus        85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  163 (369)
T 3zwl_B           85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE  163 (369)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence            46689999999999999999999998887 66789999999998877665 45     78999999765421        


Q ss_pred             -CeEEeecCCC--CEEEEEEeeCCCEEEEecCCCcEEEEeCCC-CeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           70 -PVMSYDQHTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        70 -~~~~~~~~~~--~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                       .......|..  .+.+++|+++++++++++.||.|++||++. ......+. +...|.+++|+|+++.|++++.|+.|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  243 (369)
T 3zwl_B          164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF  243 (369)
T ss_dssp             SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence             2233344555  899999999999999999999999999998 56555554 577899999999999999999999999


Q ss_pred             EEeCCCCcceeecCcccceeE
Q 042260          145 VWDLTANSCSCELGLQYGLRT  165 (174)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~  165 (174)
                      +||+++.++...+.....+..
T Consensus       244 v~d~~~~~~~~~~~~~~~~~~  264 (369)
T 3zwl_B          244 LVDVSTLQVLKKYETDCPLNT  264 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEE
T ss_pred             EEECCCCceeeeecCCCCcee
Confidence            999999988877764444433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.8e-23  Score=157.18  Aligned_cols=165  Identities=15%  Similarity=0.236  Sum_probs=137.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC---------------eEEEEEcCCCceEEEecCCcEEEEEcCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ---------------VNRLEITPNKHYLAAAGNPHIRLFDVNSSSP   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~   68 (174)
                      ++..|++++.|+.|++||+++++.+..+..+...               +.++.|++++.+++++.++.+++||++.+  
T Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~--  237 (425)
T 1r5m_A          160 DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK--  237 (425)
T ss_dssp             TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS--
T ss_pred             CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC--
Confidence            4668999999999999999999998888776655               88899999988888888999999999876  


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      .....+..|...+.+++|++++++|++++.|+.|++||++.......+. +...|.+++|+|++ .+++++.|+.|++||
T Consensus       238 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWS  316 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence            4455567899999999999999999999999999999999877666664 67889999999998 999999999999999


Q ss_pred             CCCCcceeecCcccceeEEEEEee
Q 042260          148 LTANSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      ++++++...+........-+-+++
T Consensus       317 ~~~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          317 LKQNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEECT
T ss_pred             CCCCcEeEecccCCccEEEEEEcC
Confidence            999888877654444444444444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=6.9e-23  Score=154.19  Aligned_cols=152  Identities=14%  Similarity=0.319  Sum_probs=125.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEE------cCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260            5 SVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEI------TPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      +.+|++|+.|++|++||+++++ .+..+..|...|.++.|      +|++.++++ +.|+.+++||++.++. +...+..
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~  158 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-PVANMEP  158 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-CSEEECC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-cceeccc
Confidence            5789999999999999999988 78888889899999955      566766554 5788999999987642 3444444


Q ss_pred             CCC----CEEEEE----EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc---CCCEEEEeeCCCcEEE
Q 042260           77 HTN----NVMAVG----FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP---NQTELISGDQNGNIRV  145 (174)
Q Consensus        77 ~~~----~v~~~~----~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~i  145 (174)
                      |..    .+.+++    |+++++++++++.|+.|++||+++........+...|.+++|+|   +++.|++++.||.|++
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence            433    788888    67899999999999999999999988877777888999999999   8999999999999999


Q ss_pred             EeCCCCcceeec
Q 042260          146 WDLTANSCSCEL  157 (174)
Q Consensus       146 wd~~~~~~~~~~  157 (174)
                      ||++.+.+...+
T Consensus       239 ~d~~~~~~~~~~  250 (357)
T 3i2n_A          239 FDMRTQHPTKGF  250 (357)
T ss_dssp             EEEEEEETTTEE
T ss_pred             EeCcCCCcccce
Confidence            999987665443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=9.6e-23  Score=158.72  Aligned_cols=167  Identities=19%  Similarity=0.264  Sum_probs=131.6

Q ss_pred             cEEEEEeeCCCcEEEEECCC----------CceeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCC----
Q 042260            5 SVILATASYDKTIKFWEAKS----------GRCYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSP----   68 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~----   68 (174)
                      +.+|++++.||+|++||+.+          .+.+..+..|...+.+++|+|.+. +++ ++.|+.|++||+.....    
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  220 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV  220 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence            67899999999999999876          566778888888999999999876 555 45688999999987432    


Q ss_pred             -CCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCCC-EEEEeeCCC
Q 042260           69 -QPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQT-ELISGDQNG  141 (174)
Q Consensus        69 -~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~  141 (174)
                       .....+..|...+.+++|++ ++..|++++.||.|++||++..   .....+ .+...|++++|+|+++ .+++|+.||
T Consensus       221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence             12345668999999999999 7889999999999999999875   344444 5678899999999887 688999999


Q ss_pred             cEEEEeCCC-CcceeecCcccceeEEEEEee
Q 042260          142 NIRVWDLTA-NSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      .|++||++. ......+........-+-++|
T Consensus       301 ~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             EEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             eEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            999999998 445555543344444444444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.9e-24  Score=169.49  Aligned_cols=144  Identities=8%  Similarity=0.059  Sum_probs=117.9

Q ss_pred             EEEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEE--EEcCCC-ceEE-EecCCcEEEEEcCCCCCCCeEEeecCC--
Q 042260            6 VILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRL--EITPNK-HYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHT--   78 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~--~~~~~~-~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~--   78 (174)
                      ..|++|+.||+|++||+++++. ...+..|...|.++  .|++++ .+++ ++.|+.+++||+++++  ....+.+|.  
T Consensus       278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~  355 (524)
T 2j04_B          278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRG  355 (524)
T ss_dssp             SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSC
T ss_pred             CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--ccccccccccc
Confidence            3799999999999999998744 45677888899998  567776 5554 5678999999998753  233344454  


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      ..+.+++|+|+++.+++++.|+.|++||++...+..++ .|...|.+++|+|+++.|++|+.||+|++||+...
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            25788999999999999999999999999987765444 57789999999999999999999999999998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.3e-22  Score=174.99  Aligned_cols=153  Identities=23%  Similarity=0.450  Sum_probs=135.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|++|++||+.+++.+..+..|...|.+++|+|++.+++++ .|+.|++||+.++  .....+..|...+
T Consensus       625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v  702 (1249)
T 3sfz_A          625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQV  702 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcE
Confidence            356789999999999999999999999999999999999999998877654 6789999999877  4566678899999


Q ss_pred             EEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           82 MAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        82 ~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+++|++  ++.++++|+.|+.|++||+++..+...+ .+...|.+++|+|+++.+++++.||.|++||++++.+...+
T Consensus       703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence            9999998  5668999999999999999998877666 46788999999999999999999999999999988766544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.3e-22  Score=150.76  Aligned_cols=166  Identities=16%  Similarity=0.273  Sum_probs=133.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.|+.|++||+.+++.+..+..|...|.+++|+|++.++++ +.|+.|++||+.+++  ....+. +...+
T Consensus        42 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~v  118 (369)
T 3zwl_B           42 KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ--CVATWK-SPVPV  118 (369)
T ss_dssp             TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEE-CSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEee-cCCCe
Confidence            35678999999999999999999999999989999999999998877665 568899999998764  344444 78899


Q ss_pred             EEEEEeeCCCEEEEecCC-----CcEEEEeCCCCee-----------E-EeecccC--cEEEEEEccCCCEEEEeeCCCc
Q 042260           82 MAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVC-----------Q-MEYESRA--AVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~-----------~-~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      .+++|+++++++++++.+     +.|++||++....           . ....+..  .+.+++|+|+++.|++++.||.
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  198 (369)
T 3zwl_B          119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK  198 (369)
T ss_dssp             EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred             EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence            999999999999999999     9999999865321           1 1112222  8999999999999999999999


Q ss_pred             EEEEeCCC-CcceeecCcccceeEEEEEee
Q 042260          143 IRVWDLTA-NSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      |++||+++ ......+........-+.+++
T Consensus       199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  228 (369)
T 3zwl_B          199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSP  228 (369)
T ss_dssp             EEEEETTTTTEEEEEEECCSSCEEEEEECT
T ss_pred             EEEEECCCCcEeEEEEecCCCceeEEEECC
Confidence            99999998 566666654444444444444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=1.3e-22  Score=152.91  Aligned_cols=148  Identities=18%  Similarity=0.280  Sum_probs=123.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCC----CceEE-EecCCcEEEEEcCCCCCCCeEEeec
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPN----KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      .+++++.++.|++||+.+++.+..+..     +...|.+++|+|+    +.+++ ++.|+.|++||+.++  .....+..
T Consensus        36 ~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~  113 (366)
T 3k26_A           36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVG  113 (366)
T ss_dssp             EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEES
T ss_pred             eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecC
Confidence            455555566999999998887766653     4467999999998    44555 557889999999876  44566778


Q ss_pred             CCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           77 HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        77 ~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      |...+.+++|++ ++++|++++.||.|++||++.......+    .+...|.+++|+|+++.|++++.||.|++||++++
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            999999999999 8999999999999999999998877776    46788999999999999999999999999999987


Q ss_pred             cceee
Q 042260          152 SCSCE  156 (174)
Q Consensus       152 ~~~~~  156 (174)
                      +....
T Consensus       194 ~~~~~  198 (366)
T 3k26_A          194 RMMNA  198 (366)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            65543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=1.2e-22  Score=168.30  Aligned_cols=154  Identities=20%  Similarity=0.424  Sum_probs=133.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|++|+.||+|++||+.+++.+..+..|...|.+++|+|++..+++ +.|+.|++||+.++  .....+..|...+
T Consensus        23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v  100 (814)
T 3mkq_A           23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYI  100 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCE
Confidence            35678999999999999999999999999999999999999999887665 46789999999876  4455677899999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .+++|++++.++++++.||.|++||++.. .....+ .+..+|.+++|+| +++.+++++.||.|++||++.+.....+.
T Consensus       101 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  180 (814)
T 3mkq_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             EEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence            99999999999999999999999999875 444444 4678899999999 78899999999999999999877666553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.8e-23  Score=157.56  Aligned_cols=144  Identities=14%  Similarity=0.167  Sum_probs=125.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++.+|++++.|+.|++||+++++.+..+..+...+.++.|+|++.+++++.|+.+++||++++  .....+..|...+.+
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN--TLLALSIVDGVPIFA  335 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT--EEEEEEECTTCCEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC--cEeEecccCCccEEE
Confidence            455899999999999999999999988888888999999999985556678899999999876  445566778899999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCe--------------------eEEeeccc--C-cEEEEEEccCCCEEEEeeCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPV--------------------CQMEYESR--A-AVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~--------------------~~~~~~~~--~-~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ++|++++++|++++.||.|++||++...                    ....+..+  . .|.+++|+|+++.|++++.|
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence            9999999999999999999999998765                    55555433  3 89999999999999999999


Q ss_pred             CcEEEEeCC
Q 042260          141 GNIRVWDLT  149 (174)
Q Consensus       141 ~~i~iwd~~  149 (174)
                      |.|++||++
T Consensus       416 g~i~iw~~~  424 (425)
T 1r5m_A          416 QEGSVVAIP  424 (425)
T ss_dssp             SCCEEEECC
T ss_pred             ceEEEEeec
Confidence            999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=1.2e-22  Score=152.32  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=128.4

Q ss_pred             cEEEEEeeCCCcEEEEECCC---------CceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-CCCCCeEEe
Q 042260            5 SVILATASYDKTIKFWEAKS---------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-SSPQPVMSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~   74 (174)
                      +..|++++.|++|++||+++         ++.+..+. +...+.+++|++++ +++++.++.+++||++. .........
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~  189 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEE  189 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeee
Confidence            45789999999999999987         77776666 67789999999987 67777889999999987 543344445


Q ss_pred             ecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCC------eeEEeec-cc---------CcEEEEEEccCCCEEEEe
Q 042260           75 DQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAP------VCQMEYE-SR---------AAVNTVVLHPNQTELISG  137 (174)
Q Consensus        75 ~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~-~~---------~~v~~~~~~~~~~~l~s~  137 (174)
                      ..|...+.+++|++ +++++++++.||.+++||++..      .....+. +.         ..|.+++|+|+++.|+++
T Consensus       190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence            56788999999999 9999999999999999999765      4444443 22         389999999999999999


Q ss_pred             eCCCcEEEEeCCCCcceeecCcc
Q 042260          138 DQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +.||.|++||++++++...+...
T Consensus       270 ~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          270 GSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCC
T ss_pred             cCCceEEEEcCccHhHhhhhhcc
Confidence            99999999999999888777643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-22  Score=168.63  Aligned_cols=170  Identities=17%  Similarity=0.242  Sum_probs=135.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .++.+|++|+.||+|++||+.  +++.+..+..|...|.+++|+++  +.+++ ++.|+.|++||+.++.......+..|
T Consensus        19 ~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h   98 (753)
T 3jro_A           19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH   98 (753)
T ss_dssp             SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC
Confidence            356789999999999999987  55677788889899999999876  66554 56789999999988754456667789


Q ss_pred             CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCe---eEEeecccCcEEEEEEcc-------------CCCEEEEeeC
Q 042260           78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPV---CQMEYESRAAVNTVVLHP-------------NQTELISGDQ  139 (174)
Q Consensus        78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~  139 (174)
                      ...+.+++|+|+  ++.+++|+.||.|++||++...   ......+...|.+++|+|             ++..+++|+.
T Consensus        99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A           99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred             CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence            999999999999  9999999999999999998762   222335678899999999             4889999999


Q ss_pred             CCcEEEEeCCCCcc----eeecCcccceeEEEEEeec
Q 042260          140 NGNIRVWDLTANSC----SCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       140 d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~  172 (174)
                      ||.|++||++.+..    ...+..+.....-+-++|+
T Consensus       179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence            99999999998743    3344433444444555544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.3e-23  Score=156.68  Aligned_cols=150  Identities=16%  Similarity=0.331  Sum_probs=127.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecC------CCCeEEEEEcCCC-ceEEE-ecCC---cEEEEEcCCCCCCCeEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPNK-HYLAA-AGNP---HIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~~~~-~~d~---~i~i~d~~~~~~~~~~~   73 (174)
                      +.+|++++.|++|++||+++++.+..+..+      ...+.+++|+|++ .++++ +.++   .|++||++... .+...
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~  256 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQT  256 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBC
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEE
Confidence            568999999999999999999998888766      6789999999986 45544 4566   89999998753 23444


Q ss_pred             ee-cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260           74 YD-QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT  149 (174)
Q Consensus        74 ~~-~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~  149 (174)
                      +. .|...+.+++|+| ++++|++++.|+.|++||+++......+. +...|.+++|+|++ ..|++++.|+.|++||++
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            55 7899999999999 89999999999999999999888776664 56789999999998 799999999999999999


Q ss_pred             CCccee
Q 042260          150 ANSCSC  155 (174)
Q Consensus       150 ~~~~~~  155 (174)
                      ......
T Consensus       337 ~~~~~~  342 (416)
T 2pm9_A          337 NLTNTL  342 (416)
T ss_dssp             CCCCSS
T ss_pred             CCCCCc
Confidence            876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=7.3e-23  Score=158.74  Aligned_cols=151  Identities=20%  Similarity=0.329  Sum_probs=121.3

Q ss_pred             EEEEEeeCCCcEEEEECCCCcee---------------------------------------EE-eecCCCCeEEEEEcC
Q 042260            6 VILATASYDKTIKFWEAKSGRCY---------------------------------------RT-IQYPDSQVNRLEITP   45 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~~   45 (174)
                      ..|++++.|++|++||+.+++..                                       .. ...|...|.+++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            47889999999999998765432                                       12 245778899999999


Q ss_pred             CCceEEEecCCcEEEEEcCCCCCCCeE-------EeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCee----E
Q 042260           46 NKHYLAAAGNPHIRLFDVNSSSPQPVM-------SYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVC----Q  113 (174)
Q Consensus        46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~----~  113 (174)
                      ++.+++++.|+.|++||++... ....       .+..|...+.+++|+|++ ++|++|+.||.|++||++....    .
T Consensus       188 ~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSADDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEECSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEeCCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            9998887788999999997432 1111       245788999999999998 9999999999999999988764    4


Q ss_pred             Eeeccc-C------------cEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecC
Q 042260          114 MEYESR-A------------AVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELG  158 (174)
Q Consensus       114 ~~~~~~-~------------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (174)
                      ..+..+ .            .|.+++|+|+++.|++++. +.|++||++. +.+...+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            444433 2            8999999999999999998 9999999997 66665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=7.6e-22  Score=153.64  Aligned_cols=144  Identities=23%  Similarity=0.406  Sum_probs=118.3

Q ss_pred             EEEEeeCCCcEEEEECCCCce-------eEEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCC-CCCeEEeec
Q 042260            7 ILATASYDKTIKFWEAKSGRC-------YRTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSS-PQPVMSYDQ   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~~   76 (174)
                      +|++|+.||+|++||+.++..       ...+..|...|.+++|+| .+.+++ ++.|+.|++||++... ......+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            799999999999999987432       345557888899999999 555554 4578999999998763 244556678


Q ss_pred             CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCC-CeeEEee-cccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRA-PVCQMEY-ESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  150 (174)
                      |...+.+++|++++. ++++|+.||.|++||++. ......+ .+...|.+++|+|+++ .|++++.|+.|++||++.
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999999999887 799999999999999987 3344444 4678899999999885 688999999999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=6.3e-22  Score=151.23  Aligned_cols=151  Identities=20%  Similarity=0.355  Sum_probs=121.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEEe--------
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMSY--------   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~--------   74 (174)
                      +.++++++.|+.|++||+++++.+..+..|...|.+++|+|++. ++ +++.|+.+++||++.... ....+        
T Consensus       156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~  234 (408)
T 4a11_B          156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKS  234 (408)
T ss_dssp             CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSC
T ss_pred             CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccc
Confidence            45899999999999999999999999988989999999999876 34 456789999999976542 12222        


Q ss_pred             -------ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-----------------------------------
Q 042260           75 -------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-----------------------------------  112 (174)
Q Consensus        75 -------~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-----------------------------------  112 (174)
                             ..|...+.+++|++++++|++++.||.|++||+++...                                   
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence                   46888999999999999999999999999999875321                                   


Q ss_pred             ------------EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          113 ------------QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       113 ------------~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                                  ...+ .+...|.+++|+|+++.|++++.||.|++||++..+....
T Consensus       315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence                        2222 2567899999999999999999999999999998876544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.9e-22  Score=145.37  Aligned_cols=160  Identities=21%  Similarity=0.343  Sum_probs=131.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeec-CCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v   81 (174)
                      +..+++++.|++|++||  .++....+..+...+..+.+.| ++..+ +++.|+.+++||..    .....+.. |...+
T Consensus       114 ~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i  187 (313)
T 3odt_A          114 DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSGIHNDVV  187 (313)
T ss_dssp             TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECSSCSSCE
T ss_pred             CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEeccCcccE
Confidence            34789999999999999  6777888888888999999987 55554 45678899999943    23444555 88999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+++|++++. +++++.||.|++||+++......+. +..+|.+++|+|++ .+++++.||.|++||++++++...+..+
T Consensus       188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          188 RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence            9999999988 9999999999999999888777664 67889999999998 5899999999999999999988887766


Q ss_pred             cceeEEEEEeec
Q 042260          161 YGLRTFLFYHQD  172 (174)
Q Consensus       161 ~~~~~~~~~~~~  172 (174)
                      .....-+.++++
T Consensus       266 ~~~i~~~~~~~~  277 (313)
T 3odt_A          266 AISIWSVDCMSN  277 (313)
T ss_dssp             SSCEEEEEECTT
T ss_pred             CceEEEEEEccC
Confidence            655555555554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.8e-23  Score=161.21  Aligned_cols=153  Identities=15%  Similarity=0.297  Sum_probs=119.7

Q ss_pred             CcEEEEEeeCCCcEEEEECC---CCceeEEeec------------CCCCeEEEE--EcCCCceEE-EecCCcEEEEEcCC
Q 042260            4 PSVILATASYDKTIKFWEAK---SGRCYRTIQY------------PDSQVNRLE--ITPNKHYLA-AAGNPHIRLFDVNS   65 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~~-~~~d~~i~i~d~~~   65 (174)
                      ++.+|++|+.|++|++||++   +++.......            +...+.++.  +++++.+++ ++.|+.|++||+++
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            46689999999999999985   5554443332            233455555  445666655 45788999999987


Q ss_pred             CCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEcc----CCCEEEEe
Q 042260           66 SSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHP----NQTELISG  137 (174)
Q Consensus        66 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~----~~~~l~s~  137 (174)
                      ++  .+..+..  |...+.+++|+++++++++|+.||.|++||++...+...+  .+..+|.+++++|    ++..|++|
T Consensus       202 ~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~  279 (437)
T 3gre_A          202 LE--RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG  279 (437)
T ss_dssp             CC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred             Ce--eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE
Confidence            64  4555555  8899999999999999999999999999999998887765  5567899996664    57789999


Q ss_pred             eCCCcEEEEeCCCCcceeecC
Q 042260          138 DQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +.||.|++||++++++...+.
T Consensus       280 ~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          280 SSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             STTEEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEEEEEcCCCcEEEEEE
Confidence            999999999999988776543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=1.5e-21  Score=151.89  Aligned_cols=154  Identities=20%  Similarity=0.366  Sum_probs=129.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-eEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP-VMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~   82 (174)
                      ++.+|++|+.||+|++||+++++.+..+..|...|.++.|++ +.+++++.|+.+++||++++.... ...+.+|...+.
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence            356899999999999999999999999998988999999975 356666789999999998764332 245678999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      ++++  +++++++|+.||.|++||+++..+...+. +...|.++.+  +++.+++|+.||.|++||++++.+...+....
T Consensus       261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  336 (435)
T 1p22_A          261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  336 (435)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence            9998  68999999999999999999988777764 5678999888  56899999999999999999999888776433


Q ss_pred             c
Q 042260          162 G  162 (174)
Q Consensus       162 ~  162 (174)
                      .
T Consensus       337 ~  337 (435)
T 1p22_A          337 E  337 (435)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.6e-22  Score=165.51  Aligned_cols=148  Identities=21%  Similarity=0.374  Sum_probs=126.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+|++|+.||+|++||+.+++  .+..+..|...|.++.|+|+  +..++ ++.|+.+++||++.+..........|..
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence            6789999999999999999887  66777778889999999997  66555 5578899999998875555666778999


Q ss_pred             CEEEEEEee-------------CCCEEEEecCCCcEEEEeCCCC----eeEEee-cccCcEEEEEEccC---CCEEEEee
Q 042260           80 NVMAVGFQC-------------DGNWMYSGSEDGTVKIWDLRAP----VCQMEY-ESRAAVNTVVLHPN---QTELISGD  138 (174)
Q Consensus        80 ~v~~~~~~~-------------~~~~l~t~~~dg~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~~~---~~~l~s~~  138 (174)
                      .+.+++|+|             +++.+++|+.||.|++||++..    .+...+ .+..+|.+++|+|+   ++.|++|+
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            999999999             5899999999999999999865    333333 45788999999999   89999999


Q ss_pred             CCCcEEEEeCCCCc
Q 042260          139 QNGNIRVWDLTANS  152 (174)
Q Consensus       139 ~d~~i~iwd~~~~~  152 (174)
                      .||.|++||++.+.
T Consensus       227 ~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          227 QDRTCIIWTQDNEQ  240 (753)
T ss_dssp             SSSCEEEEEESSSS
T ss_pred             cCCEEEEecCCCCC
Confidence            99999999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=2.1e-22  Score=155.34  Aligned_cols=169  Identities=17%  Similarity=0.137  Sum_probs=115.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCe----------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPV----------   71 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~----------   71 (174)
                      ++++|+|||.|++|||||++++..+.....+...+.+++|+|++. ++ +++.|+.|++||+++++....          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            578999999999999999998888888878888999999999764 44 456789999999987542111          


Q ss_pred             -------------EEeecCCCCEEEEEEe-eCCCEEEEecCCCcEEEEeCCCCeeEEeec-cc-----------------
Q 042260           72 -------------MSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SR-----------------  119 (174)
Q Consensus        72 -------------~~~~~~~~~v~~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~-----------------  119 (174)
                                   .....|...+.++.|. ++++.+++++.|+.+++||++.......+. +.                 
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                         1123566778888887 799999999999999999997644322211 11                 


Q ss_pred             -CcEEEEEEcc-CC-CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          120 -AAVNTVVLHP-NQ-TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       120 -~~v~~~~~~~-~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                       .......++| .+ .++++|+.||.|++||+.++.+..........++-+-+|||
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd  370 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD  370 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence             1112233444 33 35677889999999999998877654333334444555665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.4e-22  Score=152.91  Aligned_cols=155  Identities=17%  Similarity=0.302  Sum_probs=127.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCC------CC-C
Q 042260            4 PSVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSS------PQ-P   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~------~~-~   70 (174)
                      ++.+|++|+.|++|++||+.+    .+.+..+..|...|.+++|+|+ +.++++ +.|+.|++||+++.+      .. .
T Consensus        78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence            566899999999999999987    3577788888899999999997 666554 568899999998764      11 1


Q ss_pred             eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc-------cCcEEEEEEccCC-CEEEEeeCCC
Q 042260           71 VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQ-TELISGDQNG  141 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~s~~~d~  141 (174)
                      ......|...+.+++|+++ +.++++++.|+.|++||++.......+..       ...|.+++|+|++ ..+++++.|+
T Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence            1223568889999999998 78999999999999999999887776654       5789999999987 6889999998


Q ss_pred             ---cEEEEeCCCC-cceeecC
Q 042260          142 ---NIRVWDLTAN-SCSCELG  158 (174)
Q Consensus       142 ---~i~iwd~~~~-~~~~~~~  158 (174)
                         .|++||++.. .....+.
T Consensus       238 ~~~~i~~~d~~~~~~~~~~~~  258 (416)
T 2pm9_A          238 NDPSILIWDLRNANTPLQTLN  258 (416)
T ss_dssp             SSCCCCEEETTSTTSCSBCCC
T ss_pred             CCceEEEEeCCCCCCCcEEee
Confidence               9999999986 4445554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=1.3e-21  Score=147.18  Aligned_cols=163  Identities=20%  Similarity=0.338  Sum_probs=125.8

Q ss_pred             cEEEEEeeC---CCcEEEEECCCCceeEEee-cCCCCeEEEEEcCC---CceEE-EecCCcEEEEEcCCCCCCCeEEeec
Q 042260            5 SVILATASY---DKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPN---KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         5 ~~~l~s~s~---D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ..++++|+.   |++|++||+.+++...... .|...|.+++|+|+   +.+++ ++.|+.+++||+.+++ .....+..
T Consensus        31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~  109 (357)
T 3i2n_A           31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKG  109 (357)
T ss_dssp             SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECC
T ss_pred             ceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEe
Confidence            367788887   9999999999988755443 56778999999998   45554 5578999999998764 24566778


Q ss_pred             CCCCEEEEEE------eeCCCEEEEecCCCcEEEEeCCCCe-eEEeecc-----cCcEEEEE----EccCCCEEEEeeCC
Q 042260           77 HTNNVMAVGF------QCDGNWMYSGSEDGTVKIWDLRAPV-CQMEYES-----RAAVNTVV----LHPNQTELISGDQN  140 (174)
Q Consensus        77 ~~~~v~~~~~------~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~-----~~~v~~~~----~~~~~~~l~s~~~d  140 (174)
                      |...+.++.|      ++++++|++++.|+.|++||++... ....+..     ...+.+++    |+|+++.+++++.|
T Consensus       110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d  189 (357)
T 3i2n_A          110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN  189 (357)
T ss_dssp             CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred             cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence            9999999965      6789999999999999999998765 4444432     33788888    78899999999999


Q ss_pred             CcEEEEeCCCCcceeecCcccceeEEEE
Q 042260          141 GNIRVWDLTANSCSCELGLQYGLRTFLF  168 (174)
Q Consensus       141 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~  168 (174)
                      |.|++||++++++.....+...+....|
T Consensus       190 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          190 GDIKLFDLRNMALRWETNIKNGVCSLEF  217 (357)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CeEEEEECccCceeeecCCCCceEEEEc
Confidence            9999999999887666555554444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=4.5e-22  Score=164.74  Aligned_cols=168  Identities=21%  Similarity=0.379  Sum_probs=141.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++..|++|+.|++|++||+.+++.+..+..|...|.+++|+|++..+++ +.|+.+++||++++. .....+..|...+.
T Consensus        66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVM  144 (814)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEE
Confidence            4567999999999999999999999999989999999999999876655 567899999997652 33455678999999


Q ss_pred             EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      +++|+| +++.+++++.||.|++||++.......+.  +...+..++|+|  +++.+++++.||.|++||++++.+...+
T Consensus       145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (814)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            999999 88999999999999999998766554443  347899999999  8999999999999999999999888887


Q ss_pred             CcccceeEEEEEeec
Q 042260          158 GLQYGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~~~~~~~~~~~~~  172 (174)
                      ..+......+-+||+
T Consensus       225 ~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPT  239 (814)
T ss_dssp             ECCSSCEEEEEECSS
T ss_pred             cCCCCCEEEEEEcCC
Confidence            655556666666664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.5e-22  Score=169.28  Aligned_cols=149  Identities=11%  Similarity=0.189  Sum_probs=124.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCe---------EEe
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPV---------MSY   74 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~---------~~~   74 (174)
                      +.+|++++.|++|++||+++++++..+. +...|.+++|+|++.++++ +.|+.|++||++.+.....         ..+
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP  147 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence            3479999999999999999999988886 5568999999999887665 5789999999987642111         123


Q ss_pred             ecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeeccc-------------------CcEEEEEEccCCCEE
Q 042260           75 DQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------------------AAVNTVVLHPNQTEL  134 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l  134 (174)
                      ..|...|.+++|+|+ +..+++|+.|+.| +||+++..+...+..+                   ..|.+++|+|++..|
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            568889999999995 5789999999999 9999998877666432                   679999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCccee
Q 042260          135 ISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus       135 ~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ++|+.||+|++||++++++..
T Consensus       227 asgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          227 ITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EEEETTCCEEEEETTTCCEEE
T ss_pred             EEEECCCeEEEEECCCCcEEE
Confidence            999999999999999887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=1.3e-21  Score=151.70  Aligned_cols=167  Identities=17%  Similarity=0.280  Sum_probs=120.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce----eEEeecCCCCeEEEEEcCCCc-eEEE-e--cCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC----YRTIQYPDSQVNRLEITPNKH-YLAA-A--GNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~-~--~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .+..+++++.|+.+++||..+++.    +.....+...|..++|+|.+. ++++ +  .|+.|++||++++.  ....+.
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--~~~~~~  318 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVD  318 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--EEEEEE
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--cceeec
Confidence            456899999999999999987653    455566788899999999643 4433 2  47899999998773  334443


Q ss_pred             cCCCCEEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                       +...+.++.|+++++.+++++  .|+.|++||+++..++.++. |..+|.+++|+|+++.|++|+.|++|++||+....
T Consensus       319 -~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          319 -AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             -cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence             446799999999999888754  79999999999988887775 67889999999999999999999999999998765


Q ss_pred             ceeecC-cccceeEEEEEeecC
Q 042260          153 CSCELG-LQYGLRTFLFYHQDM  173 (174)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~  173 (174)
                      ...+.+ .........|.|+.+
T Consensus       398 ~~~~~~~~~~~~~~~s~~~~gi  419 (420)
T 4gga_A          398 PARRREREKASAAKSSLIHQGI  419 (420)
T ss_dssp             CC--------------------
T ss_pred             ccchhhhccCCccccccCCCCC
Confidence            554432 333344445556543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=1.1e-22  Score=156.96  Aligned_cols=151  Identities=17%  Similarity=0.266  Sum_probs=112.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeE-----EeecCCCCeEEEEEcC--------CCceEEE-ecCCcEEEEEcCCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYR-----TIQYPDSQVNRLEITP--------NKHYLAA-AGNPHIRLFDVNSSSPQ   69 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~~~-~~d~~i~i~d~~~~~~~   69 (174)
                      .+.+|++|+.|++|++||.++++...     .+..|...|++++|+|        ++.+|++ +.|+.+|+||++++  .
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~  177 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--G  177 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--E
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--c
Confidence            35679999999999999998886532     3456888999999987        5666665 57889999999765  3


Q ss_pred             CeEEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEee--------------------------cccCcE
Q 042260           70 PVMSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEY--------------------------ESRAAV  122 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~--------------------------~~~~~v  122 (174)
                      +......|...+.+++|+|++ ++|++|+.|+.|++||+++.......                          .+...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            445556788999999999976 48999999999999999875432211                          123457


Q ss_pred             EEEEEc-cCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          123 NTVVLH-PNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       123 ~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .++.|. |+++.|++++.|+++++||+...+....
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~  292 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE  292 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence            778876 7899999999999999999987655433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=2.6e-21  Score=150.76  Aligned_cols=149  Identities=22%  Similarity=0.429  Sum_probs=125.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +.+|++|+.||+|++||+.+++.+..+..|...|.++.+++ +.+++++.|+.|++||+.++  .....+..|...+.++
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCM  205 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEE
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEECCcC--cEEEEECCCCCcEEEE
Confidence            45789999999999999999999999999999999999973 35556678899999999876  4456677899999999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .++  ++.+++|+.||.|++||+++..+...+ .+...|.++.+  +++.+++|+.||.|++||++++.+..++...
T Consensus       206 ~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  278 (445)
T 2ovr_B          206 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH  278 (445)
T ss_dssp             EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred             Eec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC
Confidence            984  678999999999999999987776665 45678898888  6788999999999999999988888776533

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.89  E-value=3.5e-21  Score=149.86  Aligned_cols=152  Identities=22%  Similarity=0.400  Sum_probs=126.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ++..|++|+.|++|++||..+++.+..+..|...|.++.++ ...+++++.|+.|++||+.++  .....+..|...+.+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~  218 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLH  218 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC-CCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEE
Confidence            45679999999999999999999999999999999999983 234455567899999999877  446667789999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeE---Ee-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---ME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ++|+  +..+++|+.||.|++||+++....   .. ..+...|.++.+  +++.+++|+.||.|++||++++++...+..
T Consensus       219 l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  294 (435)
T 1p22_A          219 LRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG  294 (435)
T ss_dssp             EECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence            9996  569999999999999999876543   22 246678999998  778999999999999999999988877754


Q ss_pred             ccc
Q 042260          160 QYG  162 (174)
Q Consensus       160 ~~~  162 (174)
                      ...
T Consensus       295 ~~~  297 (435)
T 1p22_A          295 HKR  297 (435)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=2.6e-21  Score=166.80  Aligned_cols=166  Identities=20%  Similarity=0.322  Sum_probs=137.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+|++|+.|++|++||+.+++.+..+..|...|.++.|+|+  +.+++ ++.|+.+++||++++  .....+..|...
T Consensus       668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~~~~~~h~~~  745 (1249)
T 3sfz_A          668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECRNTMFGHTNS  745 (1249)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SEEEEECCCSSC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--chhheecCCCCC
Confidence            5678999999999999999999999999999999999999984  34554 456889999999876  445667789999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--------------------------------------------
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--------------------------------------------  116 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------------------------------------------  116 (174)
                      +.+++|+++++++++++.||.|++||++.......+                                            
T Consensus       746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            999999999999999999999999998765432211                                            


Q ss_pred             ------------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEee
Q 042260          117 ------------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       117 ------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (174)
                                  .+...|.+++|+|+++.+++++.|+.|++||+.++.+...+........-+-+++
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  892 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP  892 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence                        2345688999999999999999999999999999988877765555444444444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.89  E-value=1e-20  Score=151.65  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=128.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC--------ceeEEeecCCCCeEEEEEcCCCceEEEecC-----CcEEEEEcCCCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSG--------RCYRTIQYPDSQVNRLEITPNKHYLAAAGN-----PHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~   70 (174)
                      ++.+|++|+.|++|++||+.++        +....+..+...|.+++|+|++.+++++++     +.+++||  .+  ..
T Consensus        77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~--~~  152 (615)
T 1pgu_A           77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG--NS  152 (615)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC--CE
T ss_pred             CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC--Cc
Confidence            6779999999999999999755        567777778889999999999988776643     3567776  33  34


Q ss_pred             eEEeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec-ccC---cEEEEEEccC-CCEEEEeeCCCcEE
Q 042260           71 VMSYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE-SRA---AVNTVVLHPN-QTELISGDQNGNIR  144 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~---~v~~~~~~~~-~~~l~s~~~d~~i~  144 (174)
                      ...+..|...+.+++|+++++ .+++++.|+.|++||++.......+. +..   .|.+++|+|+ ++.|++++.|+.|+
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence            566778999999999999998 89999999999999999988877775 455   7999999999 99999999999999


Q ss_pred             EEeCCCCcceeec
Q 042260          145 VWDLTANSCSCEL  157 (174)
Q Consensus       145 iwd~~~~~~~~~~  157 (174)
                      +||+++++....+
T Consensus       233 vwd~~~~~~~~~~  245 (615)
T 1pgu_A          233 CFDGKSGEFLKYI  245 (615)
T ss_dssp             EEETTTCCEEEEC
T ss_pred             EEECCCCCEeEEe
Confidence            9999999888877

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=6.5e-21  Score=143.83  Aligned_cols=165  Identities=10%  Similarity=0.092  Sum_probs=120.0

Q ss_pred             CcEEEEEee--CCCcEEEEEC-CCCceeEEeecCCCCeEEEEEcC---CCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260            4 PSVILATAS--YDKTIKFWEA-KSGRCYRTIQYPDSQVNRLEITP---NKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s--~D~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      .++++.+++  .|++|++|++ .+|+.+.+...|...+..++|++   ++.++++ +.|+.|||||+.+++  .+.++..
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g  221 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHI  221 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEEC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcC
Confidence            355555633  6999999998 55888888888888888899988   5566665 679999999999874  4555554


Q ss_pred             C---CCCEEEEEEeeCCCEE------------EEecCCCcEEEEeCCCCeeEEee------cccCcEEEEEEccCCCEEE
Q 042260           77 H---TNNVMAVGFQCDGNWM------------YSGSEDGTVKIWDLRAPVCQMEY------ESRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        77 ~---~~~v~~~~~~~~~~~l------------~t~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~  135 (174)
                      |   ...+.+++|+|+|+++            ++|+.|+++++||..+.++...+      .+...+.+..+  ++..++
T Consensus       222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lA  299 (356)
T 2w18_A          222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAA  299 (356)
T ss_dssp             CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEE
T ss_pred             CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEE
Confidence            3   3467788999999876            66889999999999988776543      12223333333  467899


Q ss_pred             EeeCCCcEEEEeCCCCcceeecC-cccceeEEEEEeec
Q 042260          136 SGDQNGNIRVWDLTANSCSCELG-LQYGLRTFLFYHQD  172 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  172 (174)
                      +|+.|++|+|||++++++..+++ +...+.+.+-+|||
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            99999999999999999999986 33445556667775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=9.6e-21  Score=147.57  Aligned_cols=146  Identities=23%  Similarity=0.507  Sum_probs=122.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +..+++|+.|++|++||+++++.+..+..|...|.++.++ ...+++++.|+.+++||++++  .....+..|...+.++
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGM  325 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTC--CEEEEECCCCSCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCC--CEEEEEcCCcccEEEE
Confidence            4568899999999999999999998888888889999882 234455567899999999876  4456677888888887


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+  +++++++|+.||.|++||+++......+.    +..+|.+++++  ++.|++|+.||.|++||+++++....+
T Consensus       326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            76  47799999999999999999888777765    56789999995  589999999999999999999887766

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.8e-21  Score=149.30  Aligned_cols=162  Identities=11%  Similarity=0.094  Sum_probs=129.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeE----EeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEE-e
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYR----TIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMS-Y   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~-~   74 (174)
                      ++..|++|+.|+.+++|++.+++...    .+..|...|.+++|+|+   +.++++ +.|+.|++||++++.  .+.. .
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~  237 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVDKWL  237 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eeeeee
Confidence            46689999999999999998877554    66778889999999998   866654 568899999998764  3333 4


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--------------------------cCcEEEEEEc
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--------------------------RAAVNTVVLH  128 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~~  128 (174)
                      .+|...+.+++|+ ++++|++++.|+.|++||+++..+...+..                          ...|.+++++
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            5789999999999 999999999999999999998876655532                          2468999999


Q ss_pred             cCCCEEEEee-CCCcEEEEeC--CCC---cceeecCcccceeEEEE
Q 042260          129 PNQTELISGD-QNGNIRVWDL--TAN---SCSCELGLQYGLRTFLF  168 (174)
Q Consensus       129 ~~~~~l~s~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~~~~  168 (174)
                      |+++.|++++ .|+.|++||+  ..+   .....+..+..+..+.|
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~  362 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSA  362 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEe
Confidence            9999999988 8999999999  554   44555555544554444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.88  E-value=1.3e-21  Score=146.68  Aligned_cols=144  Identities=13%  Similarity=0.129  Sum_probs=121.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEc-CCCCCCCeEEeec-
Q 042260            4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDV-NSSSPQPVMSYDQ-   76 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~-~~~~~~~~~~~~~-   76 (174)
                      ++.+|++++.|++|++||+.+++   .......+...|.+++|+|++. +++ ++.|+.|++||+ ..+.   ...+.. 
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~   98 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS---FQALTNN   98 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS---EEECBSC
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc---eEecccc
Confidence            45679999999999999998877   3445557888999999999888 555 456889999999 7653   355667 


Q ss_pred             -CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---------CeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           77 -HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---------PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        77 -~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                       |...+.+++|++ ++.+++++.|+.|++||++.         ..+...+.+...|.+++|+|++  +++++.|+.|++|
T Consensus        99 ~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~  175 (342)
T 1yfq_A           99 EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWF  175 (342)
T ss_dssp             CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEE
T ss_pred             CCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEE
Confidence             999999999999 99999999999999999987         6656666678899999999877  9999999999999


Q ss_pred             eCCC-Ccc
Q 042260          147 DLTA-NSC  153 (174)
Q Consensus       147 d~~~-~~~  153 (174)
                      |++. ...
T Consensus       176 d~~~~~~~  183 (342)
T 1yfq_A          176 RLPLCEDD  183 (342)
T ss_dssp             ESSCCTTC
T ss_pred             ECCccccc
Confidence            9998 554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.1e-21  Score=154.81  Aligned_cols=158  Identities=13%  Similarity=0.140  Sum_probs=123.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-----CeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCC-----Ce
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-----QVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQ-----PV   71 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~-----~~   71 (174)
                      +++..||+++.||+|++||.++  ++..+. |..     .+.+++|+|++.+++++ .|+.|++||+.++...     .+
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l  171 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE  171 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence            4677899999999999999654  555555 544     49999999999988765 6889999999876431     23


Q ss_pred             EEe----ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---Eee--cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260           72 MSY----DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---MEY--ESRAAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        72 ~~~----~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      ..+    .+|...|.+++|+|+|  +++++.|+.|++||+......   .++  .+...|.+++|+  ++.|++++ +++
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t  246 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY  246 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE
T ss_pred             eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe
Confidence            443    5677899999999999  888999999999999876632   333  355789999999  58888887 699


Q ss_pred             EEEEeCCCCcc-eeecCcccceeEEEE
Q 042260          143 IRVWDLTANSC-SCELGLQYGLRTFLF  168 (174)
Q Consensus       143 i~iwd~~~~~~-~~~~~~~~~~~~~~~  168 (174)
                      |++||+..+.. .....++..+....|
T Consensus       247 IkLWd~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          247 VHKIDLKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             EEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred             EEEEECCCCeEEEEEcCCCceEEEEEe
Confidence            99999998877 666666666655544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=9.6e-21  Score=140.47  Aligned_cols=144  Identities=19%  Similarity=0.331  Sum_probs=115.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce----eEEeecCCCCeEEEEEcCCCc-eEE--E-ecCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC----YRTIQYPDSQVNRLEITPNKH-YLA--A-AGNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~--~-~~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .+.+|++++.|++|++||+++++.    ......+...|..+.+.|.+. ++.  + +.++.+++||.+...   .....
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~  237 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAV  237 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEE
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---ccccc
Confidence            456799999999999999988764    233445667899999998654 322  2 246789999997653   22334


Q ss_pred             cCCCCEEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .+...+..+.+.++++.++++  +.|+.|++||+++.+++.++. |..+|.+++|+|+++.|++|+.||+|++||+..
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            567889999999999887764  489999999999988887775 678999999999999999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.88  E-value=4.5e-21  Score=144.47  Aligned_cols=147  Identities=22%  Similarity=0.323  Sum_probs=123.1

Q ss_pred             EEECCCCceeEEeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEE
Q 042260           19 FWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY   94 (174)
Q Consensus        19 vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   94 (174)
                      .|+....+.+..+..|...|.+++|+|+   +.++++ +.|+.|++||+.+........+..|...|.+++|++++++|+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            3445556667777889999999999998   466554 568899999998744344356778999999999999999999


Q ss_pred             EecCCCcEEEEeCCCCeeEEeecccCcEEEEEE--ccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeE
Q 042260           95 SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL--HPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRT  165 (174)
Q Consensus        95 t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  165 (174)
                      +++.||.|++||+++........+..+|.+++|  +|+++.|++++.||.|++||++++++...+..+.....
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  175 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC  175 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred             EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence            999999999999999888877788899999999  89999999999999999999999888877765554433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=1.3e-20  Score=143.99  Aligned_cols=149  Identities=19%  Similarity=0.420  Sum_probs=122.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---ceE-EEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---HYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++.+|++++.|++|++||+.+++....+. +...+..+.+.+.+   .++ +++.++.+++||+++++  ....+..|..
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~  187 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQ  187 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCS
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCC
Confidence            45579999999999999999999888877 45678999998854   244 45578899999998763  4556778999


Q ss_pred             CEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe-eEEe----------------ecccCcEEEEEEccCCCEEEEeeCCC
Q 042260           80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV-CQME----------------YESRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~-~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      .+.+++|+++++ .+++++.||.|++||++... +...                ..+...|.+++|+|+++.|++++.||
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence            999999999988 59999999999999998654 2222                23567899999999999999999999


Q ss_pred             cEEEEeCCCCccee
Q 042260          142 NIRVWDLTANSCSC  155 (174)
Q Consensus       142 ~i~iwd~~~~~~~~  155 (174)
                      .|++||++++....
T Consensus       268 ~i~vwd~~~~~~~~  281 (408)
T 4a11_B          268 RMRLWNSSNGENTL  281 (408)
T ss_dssp             CEEEEETTTCCBCC
T ss_pred             eEEEEECCCCccce
Confidence            99999999876543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=2.3e-20  Score=144.72  Aligned_cols=165  Identities=20%  Similarity=0.384  Sum_probs=133.4

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +++.+|++|+.|++|++||+++++.+..+..|...+.++.+++. .+++++.|+.+++||..... .....+..|...+.
T Consensus       157 pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~  234 (420)
T 4gga_A          157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVC  234 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEE
T ss_pred             CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccc-eeeEEeccccccee
Confidence            45678999999999999999999999999999989998888642 33445678899999997653 34556788999999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCee-----EEeecccCcEEEEEEccCCC-EEEE--eeCCCcEEEEeCCCCcce
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-----QMEYESRAAVNTVVLHPNQT-ELIS--GDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~l~s--~~~d~~i~iwd~~~~~~~  154 (174)
                      .+.+.++++++++++.|+.+++||......     .....+...|.+++|+|.+. .+++  |+.|++|++||++++.+.
T Consensus       235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred             eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence            999999999999999999999999976432     22235667899999999765 4444  457999999999999988


Q ss_pred             eecCcccceeEEEEE
Q 042260          155 CELGLQYGLRTFLFY  169 (174)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (174)
                      ..+.....+...++.
T Consensus       315 ~~~~~~~~v~~~~~~  329 (420)
T 4gga_A          315 SAVDAHSQVCSILWS  329 (420)
T ss_dssp             EEEECSSCEEEEEEE
T ss_pred             eeeccccceeeeeec
Confidence            887766666665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.88  E-value=3.1e-21  Score=146.88  Aligned_cols=140  Identities=10%  Similarity=0.130  Sum_probs=112.6

Q ss_pred             eeCCCcEEEEECCCCc----------------eeEEeecCCCCeEEEEEcCCCceEEE-ecCCc-EEEEEcCCCCCCCeE
Q 042260           11 ASYDKTIKFWEAKSGR----------------CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPH-IRLFDVNSSSPQPVM   72 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~-i~i~d~~~~~~~~~~   72 (174)
                      |+.||+|++||+++++                ++..+..|...|.+++|+|++.++++ +.|+. +++||++++  ..+.
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~  232 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--VLVR  232 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--CEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEE
Confidence            7999999999999865                26778889999999999999987765 46887 999999877  3455


Q ss_pred             Eee-c-CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE----------------------eec--ccCcEEEEE
Q 042260           73 SYD-Q-HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM----------------------EYE--SRAAVNTVV  126 (174)
Q Consensus        73 ~~~-~-~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----------------------~~~--~~~~v~~~~  126 (174)
                      .+. + |...|.+++|+|++++|++++.|+.|++||++......                      .+.  ...+...++
T Consensus       233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (355)
T 3vu4_A          233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA  312 (355)
T ss_dssp             EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred             EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence            565 4 89999999999999999999999999999997542110                      011  112236789


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          127 LHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       127 ~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      |+|+++.|++++.||.+++|++..+.
T Consensus       313 ~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          313 WISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            99999999999999999999998644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=3.7e-20  Score=148.47  Aligned_cols=146  Identities=10%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260           24 SGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV  102 (174)
Q Consensus        24 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v  102 (174)
                      +++.+..+. +...+.+++++ ...+++++. ++.+++||+..+.... ..+..|...+.+++|++++++|++++.||.|
T Consensus       436 ~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  512 (615)
T 1pgu_A          436 TGDIIKSVR-LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKI  512 (615)
T ss_dssp             TCCEEEEEE-CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCceeeecc-cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeE
Confidence            455555554 55678999998 333444556 8899999997753221 4456788999999999999999999999999


Q ss_pred             EEEeCCCCeeEEeec--ccCcEEEEEEcc----------CCCEEEEeeCCCcEEEEeCCCC-cceeecCcccceeEEEEE
Q 042260          103 KIWDLRAPVCQMEYE--SRAAVNTVVLHP----------NQTELISGDQNGNIRVWDLTAN-SCSCELGLQYGLRTFLFY  169 (174)
Q Consensus       103 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~----------~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  169 (174)
                      ++||+++......+.  +...|.+++|+|          +++.|++++.||.|++||++++ ++...+..+.....-+-+
T Consensus       513 ~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~  592 (615)
T 1pgu_A          513 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW  592 (615)
T ss_dssp             EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE
T ss_pred             EEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEE
Confidence            999999988877765  778999999999          9999999999999999999987 677776644454444555


Q ss_pred             eec
Q 042260          170 HQD  172 (174)
Q Consensus       170 ~~~  172 (174)
                      +++
T Consensus       593 s~~  595 (615)
T 1pgu_A          593 ETP  595 (615)
T ss_dssp             EET
T ss_pred             cCC
Confidence            554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=1e-19  Score=139.06  Aligned_cols=155  Identities=12%  Similarity=0.169  Sum_probs=127.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.++++++.|++|++||+++++.+..+..+. .+.+++|+|++..+ +++ .++.|++||+.+++  ....+..+ ..+.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--~~~~~~~~-~~v~   77 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAG-SSPQ   77 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECS-SSEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--EEEEEECC-CCcc
Confidence            4678999999999999999999998887664 58999999998765 444 68899999998764  33444444 4899


Q ss_pred             EEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           83 AVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        83 ~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +++|+++++++ ++++.++.|++||+.+......+.....+.+++|+|+++.+ ++++.|+.|++||++++++...+...
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            99999999977 45667899999999998888777777889999999999977 67888999999999998877766544


Q ss_pred             cce
Q 042260          161 YGL  163 (174)
Q Consensus       161 ~~~  163 (174)
                      ..+
T Consensus       158 ~~~  160 (391)
T 1l0q_A          158 RSP  160 (391)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.87  E-value=1.4e-19  Score=134.19  Aligned_cols=170  Identities=19%  Similarity=0.342  Sum_probs=130.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-----------------------------------------CCeEEE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-----------------------------------------SQVNRL   41 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-----------------------------------------~~v~~~   41 (174)
                      +++.+|++|+.|++|++||+++++.+..+..|.                                         ..+..+
T Consensus        77 ~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (318)
T 4ggc_A           77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  156 (318)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence            356789999999999999999887766554432                                         345566


Q ss_pred             EEcCCCceEEE-ecCCcEEEEEcCCCCCC--CeEEeecCCCCEEEEEEeeCCC---EEEEecCCCcEEEEeCCCCeeEEe
Q 042260           42 EITPNKHYLAA-AGNPHIRLFDVNSSSPQ--PVMSYDQHTNNVMAVGFQCDGN---WMYSGSEDGTVKIWDLRAPVCQME  115 (174)
Q Consensus        42 ~~~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~  115 (174)
                      .+.+.+.++++ +.|+.+++||+++++..  .......+...+..+.+.+.+.   .+++++.++.|++||.+.......
T Consensus       157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~  236 (318)
T 4ggc_A          157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  236 (318)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence            66776666554 56889999999876432  2344556778899999988655   345778899999999998887777


Q ss_pred             ecccCcEEEEEEccCCCEEEEe--eCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260          116 YESRAAVNTVVLHPNQTELISG--DQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (174)
                      ..+...+..+.++|+++.++++  +.|+.|++||++++++..++..+...+.-+-+||+
T Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd  295 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  295 (318)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            7788889999999999887764  47999999999999999988765566555666664

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.3e-20  Score=150.32  Aligned_cols=142  Identities=14%  Similarity=0.117  Sum_probs=119.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce-------eEEe----ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-C
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC-------YRTI----QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-P   70 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~   70 (174)
                      +++++|++|+.||+|++||+.++..       +.++    ..|...|.+++|+|++ +++++.|+.+++||+..+... .
T Consensus       139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~  217 (588)
T 2j04_A          139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPV  217 (588)
T ss_dssp             SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccc
Confidence            4678999999999999999998753       5666    3456789999999999 778888999999999876532 2


Q ss_pred             eEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEE--ccCCCEEEEeeCCCcEEEE
Q 042260           71 VMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVL--HPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        71 ~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iw  146 (174)
                      ...+ ..|+..|.+++|+  ++.+++++ ++.|++||+..... ...+.+...+.+++|  +|++..++++.+||+ ++|
T Consensus       218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            2334 4788999999998  68999987 69999999998877 454578889999999  999999999999999 999


Q ss_pred             eCC
Q 042260          147 DLT  149 (174)
Q Consensus       147 d~~  149 (174)
                      ...
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.85  E-value=6.3e-19  Score=134.64  Aligned_cols=154  Identities=10%  Similarity=0.176  Sum_probs=125.8

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      .++++++.|++|++||+.+++.+..+..+. .+.+++|+|++..++ ++ .++.|++||+.+++  ....+. +...+.+
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~  120 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLG  120 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEE
T ss_pred             EEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcce
Confidence            455888899999999999999988887665 799999999988654 44 46889999998763  333333 3457899


Q ss_pred             EEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           84 VGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        84 ~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      ++|+++++.+ ++++.|+.|++||+++......+.....+.+++|+|+++.+ ++++.++.|++||++++++...+....
T Consensus       121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  200 (391)
T 1l0q_A          121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence            9999999977 78899999999999998888777777788999999999887 577789999999999988776665444


Q ss_pred             ce
Q 042260          162 GL  163 (174)
Q Consensus       162 ~~  163 (174)
                      .+
T Consensus       201 ~~  202 (391)
T 1l0q_A          201 AP  202 (391)
T ss_dssp             EE
T ss_pred             Cc
Confidence            33

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.85  E-value=2.4e-19  Score=138.67  Aligned_cols=158  Identities=10%  Similarity=0.111  Sum_probs=129.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEE-----eecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRT-----IQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .+.++++++.|++|++||+.+++....     +..|...+.+++|++++.+++++ .++.+++||++++  .....+..|
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~  210 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLT  210 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECS
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCC
Confidence            567889999999999999999988763     33566789999999988877665 6789999999876  344556678


Q ss_pred             CCCEEEEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee--------CCCcEEEEeC
Q 042260           78 TNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD--------QNGNIRVWDL  148 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~d~~i~iwd~  148 (174)
                      ...+.+++|+++++.+ ++++.|+.|++||+++......+.....+.+++++|+++.+++++        .|+.|++||+
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            8899999999999977 566689999999999988887777777899999999999998887        5889999999


Q ss_pred             CCCcceeecCcccce
Q 042260          149 TANSCSCELGLQYGL  163 (174)
Q Consensus       149 ~~~~~~~~~~~~~~~  163 (174)
                      ++++..........+
T Consensus       291 ~~~~~~~~~~~~~~~  305 (433)
T 3bws_A          291 DKEKLIDTIGPPGNK  305 (433)
T ss_dssp             TTTEEEEEEEEEECE
T ss_pred             CCCcEEeeccCCCCc
Confidence            988776655443333

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=1.6e-18  Score=134.07  Aligned_cols=159  Identities=12%  Similarity=0.141  Sum_probs=129.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++.++++++.|++|++||+++++.+..+..+...+..++|+|++..+ +++ .++.|++||+++++  ....+.. ...+
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~  256 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLP  256 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-CSEE
T ss_pred             CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-CCCc
Confidence            56789999999999999999999998888888889999999988765 444 57899999998763  3333333 4568


Q ss_pred             EEEEEeeCCCEEEEec--------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCc
Q 042260           82 MAVGFQCDGNWMYSGS--------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  152 (174)
                      .+++|+++++.+++++        .|+.|++||+++........+...+..++|+|+++.+ ++++.|+.|++||+++++
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            9999999999999887        5889999999988877776666788999999999755 566889999999999888


Q ss_pred             ceeecCcccceeE
Q 042260          153 CSCELGLQYGLRT  165 (174)
Q Consensus       153 ~~~~~~~~~~~~~  165 (174)
                      ....+.....+..
T Consensus       337 ~~~~~~~~~~~~~  349 (433)
T 3bws_A          337 VQKSIPVFDKPNT  349 (433)
T ss_dssp             EEEEEECSSSEEE
T ss_pred             EEEEecCCCCCCe
Confidence            7766655444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.3e-19  Score=140.31  Aligned_cols=144  Identities=16%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCC----------ceeEEe-----ecCCCCeEEEEEcCCCceEE----Ee-cCCcEEEEEcC
Q 042260            5 SVILATASYDKTIKFWEAKSG----------RCYRTI-----QYPDSQVNRLEITPNKHYLA----AA-GNPHIRLFDVN   64 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~~~----~~-~d~~i~i~d~~   64 (174)
                      +.++++++.|+ +++|+...-          ..+...     ..+...|.+++|+|++.+++    ++ .|+.|++||++
T Consensus        48 ~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~  126 (434)
T 2oit_A           48 YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR  126 (434)
T ss_dssp             TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc
Confidence            45678888887 899874311          011110     12345699999999998877    43 47789999986


Q ss_pred             CC-----CC-CC---eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCCCE
Q 042260           65 SS-----SP-QP---VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQTE  133 (174)
Q Consensus        65 ~~-----~~-~~---~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~  133 (174)
                      +.     +. .+   ...+.+|...|.+++|+|+ +++|++++.||.|++||+++...... ..+...|.+++|+|+++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~  206 (434)
T 2oit_A          127 TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ  206 (434)
T ss_dssp             HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSC
T ss_pred             ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCE
Confidence            53     11 11   2334568899999999997 88999999999999999998755433 345778999999999999


Q ss_pred             EEEeeCCCcEEEEeCC
Q 042260          134 LISGDQNGNIRVWDLT  149 (174)
Q Consensus       134 l~s~~~d~~i~iwd~~  149 (174)
                      |++|+.||+|++||++
T Consensus       207 lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          207 LAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEETTSCEEEECTT
T ss_pred             EEEEcCCCcEEEEccC
Confidence            9999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=3.2e-18  Score=133.81  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=109.6

Q ss_pred             CcEEEE----EeeCCCcEEEEECCCC--------ce---eEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCC
Q 042260            4 PSVILA----TASYDKTIKFWEAKSG--------RC---YRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~----s~s~D~~v~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~   66 (174)
                      ++.+|+    +|+.|++|++||++++        +.   +..+..|...|.+++|+|+ +.+++ ++.|+.+++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            355677    8999999999998765        22   3344457788999999997 56555 567899999999876


Q ss_pred             CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEE-e
Q 042260           67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELIS-G  137 (174)
Q Consensus        67 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s-~  137 (174)
                        ........|...+.+++|+++|++|++|+.||.|++||++. .....+.        +...|.++.|+++..++++ .
T Consensus       183 --~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          183 --VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             --EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             --cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence              33444556888999999999999999999999999999983 3232221        1137899999998887754 3


Q ss_pred             eCCC------cEEEEeCCCC
Q 042260          138 DQNG------NIRVWDLTAN  151 (174)
Q Consensus       138 ~~d~------~i~iwd~~~~  151 (174)
                      ..||      .+++||++..
T Consensus       260 ~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCCT
T ss_pred             cCCCccCCCCceEEEEeccC
Confidence            3443      3999999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.74  E-value=1.6e-15  Score=117.80  Aligned_cols=135  Identities=11%  Similarity=0.112  Sum_probs=105.6

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC---CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN---PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG   90 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (174)
                      ++|++||+.+ .....+..+...+..++|+|++..++.+ .+   ..|++||+.+++.   ..+..+...+.+++|+|+|
T Consensus       159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---~~l~~~~~~~~~~~~spdg  234 (415)
T 2hqs_A          159 YELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDG  234 (415)
T ss_dssp             EEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTS
T ss_pred             ceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---EEeecCCCcccCEEEcCCC
Confidence            7999999974 5566677777889999999999877654 34   3799999987643   2345677889999999999


Q ss_pred             CEEE-EecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcc
Q 042260           91 NWMY-SGSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANSC  153 (174)
Q Consensus        91 ~~l~-t~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~  153 (174)
                      +.|+ +++.|+.  |++||+++........+...+.+++|+|+++.|++++. ++  .|.+||+..+..
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            9877 6766655  99999988766544456678999999999999888775 45  577789887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.73  E-value=1.7e-15  Score=117.64  Aligned_cols=148  Identities=13%  Similarity=0.085  Sum_probs=113.7

Q ss_pred             CCcEEEEEeeCCC---cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cC--CcEEEEEcCCCCCCCeEEee
Q 042260            3 QPSVILATASYDK---TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GN--PHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         3 ~~~~~l~s~s~D~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d--~~i~i~d~~~~~~~~~~~~~   75 (174)
                      +++..|++++.|+   +|++||+++++.. .+..+...+..++|+|++..++ ++ .+  ..|++||+.+++.   ..+.
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~  263 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVT  263 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EECC
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE---EeCc
Confidence            3566788888885   9999999998875 4555667899999999998665 43 33  3489999987642   3455


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCC
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLT  149 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~  149 (174)
                      .|...+..++|+|+|+.|+.++. ++  .|.+||+.+........+...+.+++|+|+++.|++++.+   ..|++||+.
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            67788999999999999888876 44  6777798876644333445678899999999999887764   589999999


Q ss_pred             CCcce
Q 042260          150 ANSCS  154 (174)
Q Consensus       150 ~~~~~  154 (174)
                      ++.+.
T Consensus       344 ~~~~~  348 (415)
T 2hqs_A          344 TGGVQ  348 (415)
T ss_dssp             TCCEE
T ss_pred             CCCEE
Confidence            87653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=1.1e-15  Score=114.20  Aligned_cols=151  Identities=13%  Similarity=0.249  Sum_probs=108.1

Q ss_pred             CCCCcEEEEEeeCCCcEEEEECC-CCc--eeEEeecCCCCeEEEEEcCCCceEEEe-cC-CcEEEEEcC--CCCCCCeEE
Q 042260            1 MAQPSVILATASYDKTIKFWEAK-SGR--CYRTIQYPDSQVNRLEITPNKHYLAAA-GN-PHIRLFDVN--SSSPQPVMS   73 (174)
Q Consensus         1 ~~~~~~~l~s~s~D~~v~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-~~i~i~d~~--~~~~~~~~~   73 (174)
                      |.....++++++.|+.|++||+. +++  .+..+ .+...+..++|+|++..++.+ .+ +.+++|++.  ++.......
T Consensus         1 ~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            1 MSLKQTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             -CCEEEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCceEEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence            44445566666889999999985 342  23333 355678889999998865544 43 789999997  443333333


Q ss_pred             eecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeC---CCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeC
Q 042260           74 YDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDL---RAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDL  148 (174)
Q Consensus        74 ~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~  148 (174)
                      +..+ ..+..++|++++++++.++ .++.|.+||+   ........+.....+.+++|+|+++.+++++ .++.|++||+
T Consensus        80 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           80 SALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             EECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            4433 3788999999999776555 5889999999   4334444555556789999999999888776 7899999999


Q ss_pred             CC-Ccc
Q 042260          149 TA-NSC  153 (174)
Q Consensus       149 ~~-~~~  153 (174)
                      .+ ++.
T Consensus       159 ~~~~~~  164 (343)
T 1ri6_A          159 SDDGHL  164 (343)
T ss_dssp             CTTSCE
T ss_pred             cCCCce
Confidence            87 543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=9.5e-15  Score=109.03  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=114.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      .+.++++++.+++|++||.++++....+..+...+ .++|+|++..+ +++ .++.+.+||+.+++.. ......+....
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~   86 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQEGQSSM   86 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEEECSSCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecccCCCCc
Confidence            45678999999999999999999988887665566 99999998744 444 3678999999877531 33344454544


Q ss_pred             EEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCc-EEEEeCCCCcc
Q 042260           82 MAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGN-IRVWDLTANSC  153 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~-i~iwd~~~~~~  153 (174)
                      .+++|++++++++++..++   .|.+||+.+......+.....+..++|+|+++.++++ ..++. |.+|++.....
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~  163 (331)
T 3u4y_A           87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV  163 (331)
T ss_dssp             CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred             cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence            4499999999999655553   8999999988887777777778999999999866554 55578 99999986443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=1.4e-15  Score=113.29  Aligned_cols=150  Identities=9%  Similarity=0.122  Sum_probs=115.4

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCC--CeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeec---CC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDS--QVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQ---HT   78 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~---~~   78 (174)
                      .++++++.+++|++||..+++.+..+.....  .+..++|+|++..+ ++. .++.|.+||+.+++.........   +.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5789999999999999999998888875432  47889999998644 443 46789999998764322222111   11


Q ss_pred             CCEEEEEEeeCCCEEEEec------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           79 NNVMAVGFQCDGNWMYSGS------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                      ..+..++|++++++++.++            .++.|.+||+.+......+.....+..++|+|+++.|+++  ++.|.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            2566789999999888886            5799999999988777666666678889999999988877  6789999


Q ss_pred             eCCCCcceeec
Q 042260          147 DLTANSCSCEL  157 (174)
Q Consensus       147 d~~~~~~~~~~  157 (174)
                      |+.+++....+
T Consensus       160 d~~~~~~~~~~  170 (337)
T 1pby_B          160 DPEAGTLVEDK  170 (337)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCcEeeee
Confidence            99988766544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.67  E-value=3.6e-16  Score=128.21  Aligned_cols=153  Identities=14%  Similarity=0.163  Sum_probs=113.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC---CeEEEEEcCCCceEEEecC----------CcEEEEEcCCCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS---QVNRLEITPNKHYLAAAGN----------PHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~   70 (174)
                      ++.++++ +.|++|++||+.+++....+..+..   .+..++|+|++..++.+.+          +.+.+||+.+++...
T Consensus        27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  105 (723)
T 1xfd_A           27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS  105 (723)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred             CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe
Confidence            4555655 7899999999999988777765543   3899999999997766532          678899998875422


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCc------------------EEEEEEccCC
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAA------------------VNTVVLHPNQ  131 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~------------------v~~~~~~~~~  131 (174)
                      +.....|...+..++|+|+|+.|+.++. +.|++||+.+......... ...                  +.+++|+|++
T Consensus       106 l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg  184 (723)
T 1xfd_A          106 LDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG  184 (723)
T ss_dssp             CCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred             ccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence            2222334445888999999999999886 7999999987655433322 222                  3789999999


Q ss_pred             CEEEEeeCCC----------------------------------cEEEEeCCCCcceeecC
Q 042260          132 TELISGDQNG----------------------------------NIRVWDLTANSCSCELG  158 (174)
Q Consensus       132 ~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~  158 (174)
                      +.|++++.|+                                  .|++||+.++.+..++.
T Consensus       185 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence            9999877543                                  79999999887654443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=1.7e-14  Score=107.31  Aligned_cols=144  Identities=8%  Similarity=0.111  Sum_probs=110.5

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe---------------------
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV---------------------   71 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~---------------------   71 (174)
                      .++.|++||+.+++.+..+.. ...+..+.|+|++..++.+ ++.+.+||+.+++....                     
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  190 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence            579999999999888877765 3457788999998866655 67899999865421100                     


Q ss_pred             -------------------------------EEe------------ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260           72 -------------------------------MSY------------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR  108 (174)
Q Consensus        72 -------------------------------~~~------------~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~  108 (174)
                                                     ..+            ..+...+..++|++++++++++  ++.|.+||+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~  268 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE  268 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence                                           000            1112234568999999998888  7899999999


Q ss_pred             CCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260          109 APVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +.+....+.....+.+++|+|+++.|++++.++.|++||+++++...++..+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            8887776666667889999999999988888999999999998887776544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.66  E-value=4.5e-14  Score=105.92  Aligned_cols=152  Identities=11%  Similarity=0.127  Sum_probs=117.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCC---------eEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ---------VNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~   72 (174)
                      +.++++...++.|.+||.++++.+..+..+...         +..+.|+|++..++.+   .++.+.+||..+++  ...
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~  178 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKT  178 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEE
Confidence            346777888899999999999988887764322         6889999988755443   26679999998763  333


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-----cCcEEEEEEccCCCEEEEeeC-CCcEEEE
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-----RAAVNTVVLHPNQTELISGDQ-NGNIRVW  146 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-d~~i~iw  146 (174)
                      .+..+...+..++|+++++.++.++.++.+.+||+.+......+..     ...+..++++|+++.++.++. ++.|.+|
T Consensus       179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred             EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence            3443445578899999999999999999999999998877665542     345788999999998776654 5899999


Q ss_pred             eCCCCcceeecC
Q 042260          147 DLTANSCSCELG  158 (174)
Q Consensus       147 d~~~~~~~~~~~  158 (174)
                      |+.+++....+.
T Consensus       259 d~~~~~~~~~~~  270 (353)
T 3vgz_A          259 DTRNGNILAKVA  270 (353)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEEEEEE
Confidence            999888776554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.66  E-value=5.2e-15  Score=121.73  Aligned_cols=135  Identities=8%  Similarity=0.053  Sum_probs=104.4

Q ss_pred             CCcEEEEEeeC-CC-----cEEEEECCCCceeEEeecCCC------------------------CeEEEEEcCCCceEEE
Q 042260            3 QPSVILATASY-DK-----TIKFWEAKSGRCYRTIQYPDS------------------------QVNRLEITPNKHYLAA   52 (174)
Q Consensus         3 ~~~~~l~s~s~-D~-----~v~vwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~   52 (174)
                      .+++.|++++. |+     +|++||+.+++....+..+..                        .+..++|+|++..++.
T Consensus        46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~  125 (741)
T 2ecf_A           46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF  125 (741)
T ss_dssp             TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred             cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence            35677888888 88     899999999987766654322                        2778999999998887


Q ss_pred             ecCCcEEEEEcCCC---CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-Cc-------
Q 042260           53 AGNPHIRLFDVNSS---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-AA-------  121 (174)
Q Consensus        53 ~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~-------  121 (174)
                      +.++.+++||+.++   ...   .+..+...+..++|+|+|++|+.++. +.|++||+.+.......... ..       
T Consensus       126 ~~~~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~  201 (741)
T 2ecf_A          126 PLGGELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAE  201 (741)
T ss_dssp             EETTEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred             EeCCcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccc
Confidence            76789999999876   332   23456778999999999999999875 58999999887654432222 21       


Q ss_pred             ---------EEEEEEccCCCEEEEeeCCC
Q 042260          122 ---------VNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus       122 ---------v~~~~~~~~~~~l~s~~~d~  141 (174)
                               +..++|+|+++.|++++.|+
T Consensus       202 ~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          202 FVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             HHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             eeeeeccccccceEECCCCCEEEEEEEcC
Confidence                     47799999999999887665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.66  E-value=4.2e-14  Score=113.45  Aligned_cols=147  Identities=12%  Similarity=0.165  Sum_probs=117.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc--CCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV--NSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~--~~~~~~~~~~~~~~~~~   80 (174)
                      .+.++++++.|++|.+||..+++.+..+..... +..++++|++.++++ +.++.|++||+  .+.  ..+..+. +...
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~g~~  223 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-IGIE  223 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-CCSE
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-cCCC
Confidence            467899999999999999999999998875433 889999999887654 56788999999  544  3344444 3456


Q ss_pred             EEEEEEee----CCCEEEEecC-CCcEEEEeCCCCeeEEeecc------------cCcEEEEEEccCCCE-EEEeeCCCc
Q 042260           81 VMAVGFQC----DGNWMYSGSE-DGTVKIWDLRAPVCQMEYES------------RAAVNTVVLHPNQTE-LISGDQNGN  142 (174)
Q Consensus        81 v~~~~~~~----~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~-l~s~~~d~~  142 (174)
                      ...++|+|    +|+++++++. ++.|.+||..+.+++..+..            ...+..+.++|++.. +++...++.
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~  303 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  303 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence            89999999    9999998884 89999999998877665532            236889999997765 556778999


Q ss_pred             EEEEeCCCCcce
Q 042260          143 IRVWDLTANSCS  154 (174)
Q Consensus       143 i~iwd~~~~~~~  154 (174)
                      |.+||+.+....
T Consensus       304 i~vvd~~~~~~l  315 (543)
T 1nir_A          304 VLLVNYKDIDNL  315 (543)
T ss_dssp             EEEEECTTSSSC
T ss_pred             EEEEEecCCCcc
Confidence            999999876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=7.6e-15  Score=106.93  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=103.2

Q ss_pred             EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-CCCCCeEEeecC-CCCEEEEEEe
Q 042260           10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH-TNNVMAVGFQ   87 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-~~~v~~~~~~   87 (174)
                      +++.|++|++||+.+++..... .+...+.++.|+|++..++.+.++.+++||+.+ ++..  .....+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW-QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--KVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE-EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCceeeec-cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--EeccccccccccceEEC
Confidence            4578999999999988766444 466789999999999988888889999999987 6432  223333 3678889999


Q ss_pred             eCCCEEEEec--CCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           88 CDGNWMYSGS--EDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        88 ~~~~~l~t~~--~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      ++++++++++  .++..+||.+  .... ...+.....+..++|+|+++.|+ +++.++.+++|++..
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            9999999998  3455555554  4443 23344445689999999999877 777899999999753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.65  E-value=1.7e-14  Score=115.71  Aligned_cols=153  Identities=13%  Similarity=0.139  Sum_probs=117.9

Q ss_pred             CCcEEEEEeeCCCcEEEEEC--CCCceeEEeecCCCCeEEEEEcC----CCceEEEe--cCCcEEEEEcCCCCCCCeEEe
Q 042260            3 QPSVILATASYDKTIKFWEA--KSGRCYRTIQYPDSQVNRLEITP----NKHYLAAA--GNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      .++++|++++.|++|++||+  .+++.+..+.. ...+..++|+|    ++.+++++  .++.+.+||..+.+.  +...
T Consensus       188 pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i  264 (543)
T 1nir_A          188 ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIV  264 (543)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEE
T ss_pred             CCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceee
Confidence            46778999999999999999  88888888874 44678999999    88876654  478999999877643  3333


Q ss_pred             ec----------C-CCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEE--eecccCcEEEEEEccCCCEEEEee-C
Q 042260           75 DQ----------H-TNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQM--EYESRAAVNTVVLHPNQTELISGD-Q  139 (174)
Q Consensus        75 ~~----------~-~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~-~  139 (174)
                      ..          | ...+..+.+++++. ++++...++.|.+||........  .+.....+.+++|+|+++++++++ .
T Consensus       265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG
T ss_pred             cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC
Confidence            22          2 23688999998654 67788899999999998754322  445556678899999999876554 5


Q ss_pred             CCcEEEEeCCCCcceeecC
Q 042260          140 NGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~~  158 (174)
                      +++|.+||..++++...+.
T Consensus       345 ~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          345 SNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             GTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEECCCCeEEEeec
Confidence            8899999999998876654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=3.2e-14  Score=103.56  Aligned_cols=152  Identities=12%  Similarity=0.088  Sum_probs=106.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-CceeEEeecC-CCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYP-DSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++..|++++ ++.|++||+.+ ++.......+ ...+..+.|+|++..++.+.   ++..++|.++..... ...+.. .
T Consensus        52 dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~  128 (297)
T 2ojh_A           52 DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-N  128 (297)
T ss_dssp             TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-S
T ss_pred             CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-C
Confidence            456777776 88999999998 8776655544 35678899999998776654   235566655332212 222223 3


Q ss_pred             CCEEEEEEeeCCCEEE-EecCCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCC-CCcc
Q 042260           79 NNVMAVGFQCDGNWMY-SGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLT-ANSC  153 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~  153 (174)
                      ..+..++|+++++.++ +++.++.+++|++  ..........+...+.+++|+|+++.|+.++ .++.+++|++. ....
T Consensus       129 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~  208 (297)
T 2ojh_A          129 LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS  208 (297)
T ss_dssp             SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence            4488899999999877 7888999999995  3444433345567899999999999887665 58999999987 4444


Q ss_pred             eeecC
Q 042260          154 SCELG  158 (174)
Q Consensus       154 ~~~~~  158 (174)
                      ...+.
T Consensus       209 ~~~~~  213 (297)
T 2ojh_A          209 VERIT  213 (297)
T ss_dssp             EEECC
T ss_pred             cEEEe
Confidence            44443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=7.5e-15  Score=109.93  Aligned_cols=151  Identities=11%  Similarity=0.158  Sum_probs=112.1

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecC--
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQH--   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~--   77 (174)
                      ..+.++++++.+++|++||+.+++.+..+..+. ..+..++|+|++..+ ++. .++.|.+||+.+++.  .......  
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~~~   86 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSV   86 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcccc
Confidence            457789999999999999999999888877543 247789999998754 333 567899999987632  2222221  


Q ss_pred             ----CCCEEEEEEeeCCCEEEEecCC------------CcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEee
Q 042260           78 ----TNNVMAVGFQCDGNWMYSGSED------------GTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        78 ----~~~v~~~~~~~~~~~l~t~~~d------------g~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~  138 (174)
                          ...+..++|+++|+++++++.+            +.|.+||+.+.   .....+.....+.+++|+|+++ +++++
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~  165 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG  165 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc
Confidence                1236788999999999998865            89999999863   2233444555688999999999 66554


Q ss_pred             CCCcEEEEeCCCCcceeecC
Q 042260          139 QNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       139 ~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .  .|.+||+.+++....+.
T Consensus       166 ~--~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          166 P--DIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             S--SEEEECTTTCCEEEEEC
T ss_pred             C--cEEEEeCCCCceecccc
Confidence            3  49999999887765554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.62  E-value=2e-13  Score=102.42  Aligned_cols=157  Identities=11%  Similarity=0.114  Sum_probs=114.8

Q ss_pred             EEEEe-eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEe--ecCCCCEE
Q 042260            7 ILATA-SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSY--DQHTNNVM   82 (174)
Q Consensus         7 ~l~s~-s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~   82 (174)
                      +++++ +.++.|.+||.++++.+..+..+...+..+.|+|++..++ +..++.+.+||..+++.......  ..+...+.
T Consensus       155 l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 3vgz_A          155 VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFI  234 (353)
T ss_dssp             EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEE
T ss_pred             EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccc
Confidence            44444 4588999999999998888875555678899999887554 45678899999987643222211  12455678


Q ss_pred             EEEEeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeecCcc
Q 042260           83 AVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+++++++++++.++ .++.|.+||+.+.+....+....+ ..++|+|+++.++.+. .++.|.+||..+++....+...
T Consensus       235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence            899999999766655 459999999998877666654443 5689999999766554 6899999999998877666554


Q ss_pred             ccee
Q 042260          161 YGLR  164 (174)
Q Consensus       161 ~~~~  164 (174)
                      ..+.
T Consensus       314 ~~~~  317 (353)
T 3vgz_A          314 THPN  317 (353)
T ss_dssp             SEEE
T ss_pred             CCCC
Confidence            4443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=3.6e-13  Score=100.44  Aligned_cols=155  Identities=10%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             CcE-EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCceEEEecCC----cEEEEEcCCCCCCCeEEeecC
Q 042260            4 PSV-ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNP----HIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         4 ~~~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      ++. +++++..++.|++||.++++. ...+..+..+..+++|+|++..++++.+.    .+++||+.+++.  ..... .
T Consensus        50 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~-~  126 (331)
T 3u4y_A           50 DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIP-I  126 (331)
T ss_dssp             SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEE-C
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEE-C
Confidence            344 555666699999999999987 66666665555559999999877765433    799999987643  33333 3


Q ss_pred             CCCEEEEEEeeCCCEE-EEecCCCc-EEEEeCCCCeeE-----EeecccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCC
Q 042260           78 TNNVMAVGFQCDGNWM-YSGSEDGT-VKIWDLRAPVCQ-----MEYESRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLT  149 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l-~t~~~dg~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~  149 (174)
                      ......++|+|+|+++ +++..++. +.+|++......     ........+..++|+|+++.++. +..++.|++||++
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            3557899999999854 55566688 999998753221     22234456899999999996654 4468899999999


Q ss_pred             CCcc---eeecCccc
Q 042260          150 ANSC---SCELGLQY  161 (174)
Q Consensus       150 ~~~~---~~~~~~~~  161 (174)
                      +++.   ...++...
T Consensus       207 ~~~~~~~~~~~~~~~  221 (331)
T 3u4y_A          207 NPENITLLNAVGTNN  221 (331)
T ss_dssp             STTSCEEEEEEECSS
T ss_pred             CCcccceeeeccCCC
Confidence            8887   65554433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.59  E-value=7.4e-13  Score=98.67  Aligned_cols=145  Identities=12%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             cEEEEEee-CCCcEEEEECCC-CceeE----Eeec-CCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCC--CCCCCeEE
Q 042260            5 SVILATAS-YDKTIKFWEAKS-GRCYR----TIQY-PDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNS--SSPQPVMS   73 (174)
Q Consensus         5 ~~~l~s~s-~D~~v~vwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~--~~~~~~~~   73 (174)
                      +..+++++ .|+.|++||+.+ ++...    .... ....+..++|+|++..+ +++ .++.+++|++..  +.......
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~  219 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT  219 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence            43444444 899999999987 65432    2232 23468889999998855 444 577899999954  32221222


Q ss_pred             eec---C---CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCC----CCeeEEeecccCcEEEEEEccCCCEEEEee-CCC
Q 042260           74 YDQ---H---TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLR----APVCQMEYESRAAVNTVVLHPNQTELISGD-QNG  141 (174)
Q Consensus        74 ~~~---~---~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~  141 (174)
                      ...   .   ...+..++|++++++++ ++..++.|.+||+.    .......+.....+..++|+|+++.|++++ .++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC
Confidence            211   1   23566899999998776 56689999999998    233334444444588999999999888777 589


Q ss_pred             cEEEEeCC
Q 042260          142 NIRVWDLT  149 (174)
Q Consensus       142 ~i~iwd~~  149 (174)
                      .|.+|++.
T Consensus       300 ~v~v~~~d  307 (343)
T 1ri6_A          300 HISVYEIV  307 (343)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999655

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.58  E-value=3.9e-13  Score=100.53  Aligned_cols=149  Identities=13%  Similarity=0.162  Sum_probs=105.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCC------CCeEEEEEcCCCceEEEec-------------CCcEEEEEcCCC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPD------SQVNRLEITPNKHYLAAAG-------------NPHIRLFDVNSS   66 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~-------------d~~i~i~d~~~~   66 (174)
                      .++++++.++.|.+||+.+++.+..+..+.      ..+..++|+|++..++.+.             ++.+.+||+.++
T Consensus        56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence            456777789999999999998887776432      2267899999988766553             378999999774


Q ss_pred             CCC-CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------------------
Q 042260           67 SPQ-PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------------------  119 (174)
Q Consensus        67 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------------------  119 (174)
                      +.. ...... +...+.+++|+++++ ++.++.  .|.+||+.+.+....+...                          
T Consensus       136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             GGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             cccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            322 222233 334688889999999 555544  4999999876655443221                          


Q ss_pred             -------------------------------------------CcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCccee
Q 042260          120 -------------------------------------------AAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus       120 -------------------------------------------~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                                                                 ..+..++++| +++.++++  ++.|.+||+++++...
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       1345677789 99988887  7899999999887765


Q ss_pred             ecCcc
Q 042260          156 ELGLQ  160 (174)
Q Consensus       156 ~~~~~  160 (174)
                      .+...
T Consensus       290 ~~~~~  294 (349)
T 1jmx_B          290 AANLD  294 (349)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            55433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.55  E-value=2.1e-14  Score=117.96  Aligned_cols=132  Identities=9%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC---CeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS---QVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~   70 (174)
                      ++.+++++ .|++|++||+.+++....+..+..   .+..++|+|++..++.+.          ++.+++||+.+++...
T Consensus        26 dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           26 GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            45555554 699999999999988766654432   388999999999776543          4789999998764310


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cc-cCcE-----------------EEEEEccCC
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ES-RAAV-----------------NTVVLHPNQ  131 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~-~~~v-----------------~~~~~~~~~  131 (174)
                      ...+   ...+..++|+|+|+.|+.+. ++.|++||+.+....... .. ...+                 .+++|+|++
T Consensus       105 ~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG  180 (719)
T 1z68_A          105 GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG  180 (719)
T ss_dssp             SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS
T ss_pred             ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC
Confidence            0111   24578899999999999885 779999999876543221 11 1112                 489999999


Q ss_pred             CEEEEeeCC
Q 042260          132 TELISGDQN  140 (174)
Q Consensus       132 ~~l~s~~~d  140 (174)
                      +.|++++.|
T Consensus       181 ~~la~~~~d  189 (719)
T 1z68_A          181 KFLAYAEFN  189 (719)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEC
Confidence            999988755

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.55  E-value=1.3e-13  Score=110.86  Aligned_cols=140  Identities=9%  Similarity=0.040  Sum_probs=104.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC----CcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN----PHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d----~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      .++++++.|+ +.+||+.+++.......+.   ....|+|+|..++.+ .+    ..|++||+.+++..   .+..|...
T Consensus       124 ~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~---~l~~~~~~  196 (582)
T 3o4h_A          124 VVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR---VFDSGEGS  196 (582)
T ss_dssp             EEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE---EECCSSCE
T ss_pred             EEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce---EeecCCCc
Confidence            3556666555 5599999887655544332   788999999988743 33    56899999877543   34567788


Q ss_pred             EEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeecccCcEEEEE--------EccCCCEEEEeeCCCcEEEEeCCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVV--------LHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      +...+|+|+|+.|+++..++  .|++||+.+........+...+..++        |+|++..+++++.|+++++|++  
T Consensus       197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--  274 (582)
T 3o4h_A          197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--  274 (582)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred             cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence            99999999999999888888  89999998876652223333444445        9999988889999999999999  


Q ss_pred             Ccce
Q 042260          151 NSCS  154 (174)
Q Consensus       151 ~~~~  154 (174)
                      +++.
T Consensus       275 g~~~  278 (582)
T 3o4h_A          275 GERV  278 (582)
T ss_dssp             TEEE
T ss_pred             CCee
Confidence            5443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.55  E-value=6.6e-14  Score=115.14  Aligned_cols=148  Identities=10%  Similarity=0.064  Sum_probs=110.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC--
Q 042260            4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN--   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--   79 (174)
                      +++.|++++. ++|++||+.+++  ....+..+...+..+.|+|++..++.+.++.|++||+.+++...+  ...+..  
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~--~~~~~~~~  195 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL--TADGSTTI  195 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC--CCCCCSSE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe--ccCCccce
Confidence            5667777775 899999999873  344455566779999999999988877788999999977532211  111222  


Q ss_pred             --------------CEEEEEEeeCCCEEEEecCCC---------------------------------cEEEEeCCC-Ce
Q 042260           80 --------------NVMAVGFQCDGNWMYSGSEDG---------------------------------TVKIWDLRA-PV  111 (174)
Q Consensus        80 --------------~v~~~~~~~~~~~l~t~~~dg---------------------------------~v~iwd~~~-~~  111 (174)
                                    .+..+.|+|+|++|++++.|+                                 .|.+||+.+ ..
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~  275 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ  275 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred             eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence                          146789999999999987765                                 789999987 66


Q ss_pred             eEEee---cccCcEEEEEEccCCCEEEEeeC-----CCcEEEEeCCCCccee
Q 042260          112 CQMEY---ESRAAVNTVVLHPNQTELISGDQ-----NGNIRVWDLTANSCSC  155 (174)
Q Consensus       112 ~~~~~---~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~  155 (174)
                      .....   .+...+..++| |+++.|+.++.     +..|++||+.++++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence            54332   24567899999 99999886653     5679999999887553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.54  E-value=2.8e-13  Score=110.93  Aligned_cols=142  Identities=11%  Similarity=0.108  Sum_probs=107.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-----CCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-----SSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~   79 (174)
                      +.++++  .|+++++||+.+++..... .+...+..++|+|++..++.+.++.|++||+.+     ++...+.  ..+..
T Consensus        93 ~~~~~~--~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~--~~~~~  167 (706)
T 2z3z_A           93 GLVVLF--TQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVT--IDGTE  167 (706)
T ss_dssp             TEEEEE--ETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESC--SCCBT
T ss_pred             CeEEEE--ECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEec--cCCCC
Confidence            444444  3599999999988765443 345568889999999988888889999999987     5432211  12222


Q ss_pred             C--------------EEEEEEeeCCCEEEEec---------------------------------CCCcEEEEeCCCCee
Q 042260           80 N--------------VMAVGFQCDGNWMYSGS---------------------------------EDGTVKIWDLRAPVC  112 (174)
Q Consensus        80 ~--------------v~~~~~~~~~~~l~t~~---------------------------------~dg~v~iwd~~~~~~  112 (174)
                      .              +.++.|+|+|++|++++                                 .+..|.+||+.+...
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            2              47899999999999987                                 457899999998775


Q ss_pred             EEee---cccCcEEEEEEccCCCEEEEeeCCC-----cEEEEeCCCC
Q 042260          113 QMEY---ESRAAVNTVVLHPNQTELISGDQNG-----NIRVWDLTAN  151 (174)
Q Consensus       113 ~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~  151 (174)
                      ....   .+...+..++|+|+++.|++++.++     .|++||+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            4433   2345689999999999999887765     8999999987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.53  E-value=2.1e-12  Score=97.10  Aligned_cols=151  Identities=12%  Similarity=0.165  Sum_probs=102.0

Q ss_pred             CcEEEEEeeCCCcEEEEECC-CCcee--EEeecC-CCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCC--CCCCCeEEee
Q 042260            4 PSVILATASYDKTIKFWEAK-SGRCY--RTIQYP-DSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNS--SSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~--~~~~~~~~~~   75 (174)
                      ++.++++...++.|++||+. +++..  ..+..+ ......++|+|++.+++. . .++.+++|++..  ++........
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  230 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK  230 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence            44577778889999999998 55432  222222 335788999999985443 3 567899999874  3222222222


Q ss_pred             cCC------CCEEEEEEeeCCCEE-EEecCCCcEEEEeCCC---CeeEEeecc-cCcEEEEEEccCCCEEEEeeC-CCcE
Q 042260           76 QHT------NNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRA---PVCQMEYES-RAAVNTVVLHPNQTELISGDQ-NGNI  143 (174)
Q Consensus        76 ~~~------~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i  143 (174)
                      ...      ..+..++|+|+|+++ ++...++.|.+||+..   ......+.. ...+..++|+|+++.|++++. ++.|
T Consensus       231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  310 (347)
T 3hfq_A          231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA  310 (347)
T ss_dssp             SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred             ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence            222      348889999999977 5666789999999872   233333332 445789999999998887775 4899


Q ss_pred             EEEeC--CCCcce
Q 042260          144 RVWDL--TANSCS  154 (174)
Q Consensus       144 ~iwd~--~~~~~~  154 (174)
                      .+|++  ++++..
T Consensus       311 ~v~~~d~~tg~l~  323 (347)
T 3hfq_A          311 TLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEECTTTCCEE
T ss_pred             EEEEEeCCCCeEE
Confidence            99955  445433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.52  E-value=1.3e-13  Score=113.07  Aligned_cols=150  Identities=10%  Similarity=0.063  Sum_probs=108.2

Q ss_pred             CCcEEEEEeeCC---------CcEEEEECCCCceeEEeec---CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC
Q 042260            3 QPSVILATASYD---------KTIKFWEAKSGRCYRTIQY---PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP   70 (174)
Q Consensus         3 ~~~~~l~s~s~D---------~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~   70 (174)
                      .+++.|++++.+         +.+++||+.+++. ..+..   +...+..++|+|++..++.+.++.|++||+.+++...
T Consensus        70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~  148 (723)
T 1xfd_A           70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR  148 (723)
T ss_dssp             TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred             CCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEE
Confidence            356678888764         7788999998876 23322   2334788999999998887777899999998764332


Q ss_pred             eEEeecCCC------------------CEEEEEEeeCCCEEEEecCCC--------------------------------
Q 042260           71 VMSYDQHTN------------------NVMAVGFQCDGNWMYSGSEDG--------------------------------  100 (174)
Q Consensus        71 ~~~~~~~~~------------------~v~~~~~~~~~~~l~t~~~dg--------------------------------  100 (174)
                      +  ...+..                  .+..++|+|+|+.|++++.|+                                
T Consensus       149 ~--~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          149 V--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             E--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             E--ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            2  222222                  237899999999999987553                                


Q ss_pred             --cEEEEeCCCCeeEEeecc-------cCcEEEEEEccCCCEEEEeeC----CCcEEEEeCCCCccee
Q 042260          101 --TVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQTELISGDQ----NGNIRVWDLTANSCSC  155 (174)
Q Consensus       101 --~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~  155 (174)
                        .|++||+.+......+..       ...+..++|+|+++.+++.+.    +..|++||+.++++..
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence              799999987764333332       456889999999998876543    3579999999887543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.52  E-value=1.4e-13  Score=112.81  Aligned_cols=154  Identities=8%  Similarity=0.116  Sum_probs=108.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCC-----CceeEEeecCCCC--------------eEEEEEcCCCceEEEec----------
Q 042260            4 PSVILATASYDKTIKFWEAKS-----GRCYRTIQYPDSQ--------------VNRLEITPNKHYLAAAG----------   54 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~----------   54 (174)
                      +++.|+.+ .|+.|++||+.+     ++.......+...              +..+.|+|++..++.+.          
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~  209 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP  209 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence            45567774 689999999998     7765544333322              47899999998776542          


Q ss_pred             ------------------------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC-----cEEEE
Q 042260           55 ------------------------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----TVKIW  105 (174)
Q Consensus        55 ------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iw  105 (174)
                                              +..+++||+.+++...+.....|...+..++|+|+|+.|++++.++     .|++|
T Consensus       210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence                                    2468999998764322221124566789999999999999887765     89999


Q ss_pred             eCCCC-eeEEeec--ccC---cEEEEEEcc--CCCEEEEeeCCCcEEEEeCC-CCcceeecC
Q 042260          106 DLRAP-VCQMEYE--SRA---AVNTVVLHP--NQTELISGDQNGNIRVWDLT-ANSCSCELG  158 (174)
Q Consensus       106 d~~~~-~~~~~~~--~~~---~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  158 (174)
                      |+.+. .......  ...   .+..++|+|  ++++++++..|+.+++|++. ++....++.
T Consensus       290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            99887 4333221  111   246789999  99999999899999999887 455444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.51  E-value=3.4e-12  Score=95.98  Aligned_cols=147  Identities=14%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             CcEEEEEee-CCCcEEEEECC-CCc--eeEEeecC---------CCCeEEEEEcCCCceEEEe-cCCcEEEEEcC-CCCC
Q 042260            4 PSVILATAS-YDKTIKFWEAK-SGR--CYRTIQYP---------DSQVNRLEITPNKHYLAAA-GNPHIRLFDVN-SSSP   68 (174)
Q Consensus         4 ~~~~l~s~s-~D~~v~vwd~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~   68 (174)
                      ++..|++++ .++++++||+. ++.  .+..+...         ...+..++|+|++.++++. .++.+++|++. .+..
T Consensus        96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence            345555655 78999999985 333  23333221         1247889999998855554 46789999998 3332


Q ss_pred             CCeEEeecC-CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCC--CeeE--Eeecc-c------CcEEEEEEccCCCEEE
Q 042260           69 QPVMSYDQH-TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRA--PVCQ--MEYES-R------AAVNTVVLHPNQTELI  135 (174)
Q Consensus        69 ~~~~~~~~~-~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~--~~~~--~~~~~-~------~~v~~~~~~~~~~~l~  135 (174)
                      ........+ ......++|+|+|++++ ++..++.+.+|++..  ....  ..... .      ..+..++|+|+++.|+
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence            222222222 23677899999999554 467789999999874  3321  11111 1      4588999999999874


Q ss_pred             -EeeCCCcEEEEeCCC
Q 042260          136 -SGDQNGNIRVWDLTA  150 (174)
Q Consensus       136 -s~~~d~~i~iwd~~~  150 (174)
                       +...++.|.+||+..
T Consensus       256 v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEETTTEEEEEEECG
T ss_pred             EEeCCCCEEEEEEECC
Confidence             555688999999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.50  E-value=6.5e-13  Score=113.52  Aligned_cols=143  Identities=13%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEEe-cCCcEE-EEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAAA-GNPHIR-LFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~d~~i~-i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++..|+.++ ++.+++|+..+++... +..+.. .+..+.|+ ++..++.+ .+..+. +||+..+..   ..+..|...
T Consensus       307 dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~---~~l~~~~~~  380 (1045)
T 1k32_A          307 DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA---EKFEENLGN  380 (1045)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---EECCCCCCS
T ss_pred             CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---eEecCCccc
Confidence            455666766 7899999998876543 444555 78899999 87766554 444566 778876532   223367788


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC----------cEEEEeCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG----------NIRVWDLT  149 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~----------~i~iwd~~  149 (174)
                      +..++|+|+|++|++++.++.|++||+.+....... .+...+.+++|+|+++.|++++.++          .|++||+.
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            999999999999999999999999999987766555 5566789999999999998877644          89999999


Q ss_pred             CCc
Q 042260          150 ANS  152 (174)
Q Consensus       150 ~~~  152 (174)
                      .++
T Consensus       461 ~g~  463 (1045)
T 1k32_A          461 GRK  463 (1045)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.48  E-value=8.6e-12  Score=94.31  Aligned_cols=148  Identities=11%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             EEEEeeCCCcEEEEECCCCce------e------EEee-cCCCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCCCCCCCe
Q 042260            7 ILATASYDKTIKFWEAKSGRC------Y------RTIQ-YPDSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNSSSPQPV   71 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~------~------~~~~-~~~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~~~~~~~   71 (174)
                      +++++..++.|++|++.....      +      .... ........++|+|++.+++. . .++.+.+||+.++.....
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            556666689999998765431      1      1222 23455788999999986544 4 478899999986533222


Q ss_pred             EEee---cCCCCEEEEEEeeCCCEEEEecC--CCcEEEEeCC--CCe--eEEeecccCcEEEEEEccCCCEEEEee-CCC
Q 042260           72 MSYD---QHTNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLR--APV--CQMEYESRAAVNTVVLHPNQTELISGD-QNG  141 (174)
Q Consensus        72 ~~~~---~~~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~  141 (174)
                      ....   .+......++|+|+|++++.+..  ++.|.+|++.  ...  ....+.....+..++|+|+++.|++++ .++
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence            2222   22345679999999998866555  4899999985  223  233333345678999999999888877 578


Q ss_pred             cEEEEeCC--CCcce
Q 042260          142 NIRVWDLT--ANSCS  154 (174)
Q Consensus       142 ~i~iwd~~--~~~~~  154 (174)
                      .|.+|++.  +++..
T Consensus       329 ~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          329 VIQIFERDQATGLLT  343 (361)
T ss_dssp             EEEEEEECTTTCCEE
T ss_pred             CEEEEEEECCCCcEe
Confidence            89996554  45433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.48  E-value=2e-12  Score=110.49  Aligned_cols=144  Identities=8%  Similarity=0.098  Sum_probs=112.5

Q ss_pred             CcEEEEEeeCCCcEE-EEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            4 PSVILATASYDKTIK-FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      ++..|+.++.+..+. +||+.+++... +..+...+..++|+|++..++. +.++.+++||+.+++.  ......|...+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v  423 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMI  423 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCC
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCc
Confidence            456777888888888 99988776543 3356677999999999987765 4567899999987743  33344678888


Q ss_pred             EEEEEeeCCCEEEEecCCC----------cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           82 MAVGFQCDGNWMYSGSEDG----------TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg----------~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ..++|+|+|+++++++.++          .|++||+.+........+...+..++|+|+++.|+.++.++..+.|+...
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            9999999999998887654          89999999877443334566788999999999999999888888887653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=1.9e-11  Score=90.09  Aligned_cols=152  Identities=11%  Similarity=0.038  Sum_probs=117.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC-CCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH-TNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~   80 (174)
                      .++++|++++.|+.|.+||.++|+.+..+..+. ..+.++.+.|++.+++ +.++.+..||. +++  .+..+..+ ...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~~~~~~~   78 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIAAPAGCE   78 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEECCTTCE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEcCCCCcc
Confidence            467899999999999999999999998888664 4688899999999888 55777999998 553  34444443 246


Q ss_pred             EEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeecc-------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           81 VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +.++.+.++|+.+++.+. ++.+..+|.. .+.+..+..       ......+.+.++++.+++...++.|..||.+ ++
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            778889999999999887 7788888864 444433321       1234456788999999999999999999998 88


Q ss_pred             ceeecCcc
Q 042260          153 CSCELGLQ  160 (174)
Q Consensus       153 ~~~~~~~~  160 (174)
                      .++++..+
T Consensus       157 ~~w~~~~~  164 (276)
T 3no2_A          157 LLNSVKLS  164 (276)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            88777543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.41  E-value=5.1e-11  Score=90.58  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             CCCcEEEEECC-CCceeEEee----cCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcC-CCCCCCeEEee--cCCCCEE
Q 042260           13 YDKTIKFWEAK-SGRCYRTIQ----YPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVN-SSSPQPVMSYD--QHTNNVM   82 (174)
Q Consensus        13 ~D~~v~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~-~~~~~~~~~~~--~~~~~v~   82 (174)
                      .++++++|++. +|+....+.    .+...+..++|+|++..++.+  +++.|++||+. +++........  .+.....
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            69999999987 466544433    134568999999999866554  46789999997 55433222232  2346688


Q ss_pred             EEEEeeCCCEEEEecC-CCcEEEEeCC--CCeeEE------eeccc----C-------cEEEEE-EccCCCEEEEeeCC-
Q 042260           83 AVGFQCDGNWMYSGSE-DGTVKIWDLR--APVCQM------EYESR----A-------AVNTVV-LHPNQTELISGDQN-  140 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~-dg~v~iwd~~--~~~~~~------~~~~~----~-------~v~~~~-~~~~~~~l~s~~~d-  140 (174)
                      .++|+|+|++++.++. ++.|.+|++.  +.....      .+...    .       .+..++ |+|+++.|+++..+ 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999998877664 7899999765  333221      11111    2       488999 99999988766542 


Q ss_pred             C-----cEEEEeCC-CCc
Q 042260          141 G-----NIRVWDLT-ANS  152 (174)
Q Consensus       141 ~-----~i~iwd~~-~~~  152 (174)
                      .     .|.+|++. +++
T Consensus       277 ~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             STTSCCEEEEEEECTTSC
T ss_pred             CCCCCCeEEEEEECCCCC
Confidence            2     89999996 444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.41  E-value=4.6e-11  Score=90.31  Aligned_cols=143  Identities=15%  Similarity=0.266  Sum_probs=95.4

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEe----ec----------CCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCC--
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTI----QY----------PDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSP--   68 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~----~~----------~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~--   68 (174)
                      ++++...++++.+|++.....+..+    ..          +...+..++|+|++..++ +. +++.+++|++.....  
T Consensus       112 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~  191 (361)
T 3scy_A          112 IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD  191 (361)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence            4455557899999998754332111    11          112357899999998554 33 467899999876532  


Q ss_pred             --C-Ce------EEeecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCCeeE--Eeec----ccCcEEEEEEccCCC
Q 042260           69 --Q-PV------MSYDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQ--MEYE----SRAAVNTVVLHPNQT  132 (174)
Q Consensus        69 --~-~~------~~~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~--~~~~----~~~~v~~~~~~~~~~  132 (174)
                        . ..      .....+......++|+|+|++++.++ .++.|.+||+......  ....    ....+..++|+|+++
T Consensus       192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~  271 (361)
T 3scy_A          192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK  271 (361)
T ss_dssp             TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred             cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence              1 11      11122345678899999999876666 6899999999865432  2121    123468999999999


Q ss_pred             EEEEeeC--CCcEEEEeCC
Q 042260          133 ELISGDQ--NGNIRVWDLT  149 (174)
Q Consensus       133 ~l~s~~~--d~~i~iwd~~  149 (174)
                      .|+++..  ++.|.+|++.
T Consensus       272 ~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          272 YLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEECSSSCEEEEEEEC
T ss_pred             EEEEECCCCCCEEEEEEEc
Confidence            8876655  4889999996

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.40  E-value=6.9e-13  Score=108.89  Aligned_cols=149  Identities=14%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             CcEEEEEeeC---------CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASY---------DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~---------D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      +++.|+.++.         |++|++||+.+++.+..... ...+..++|+|+|..++.+.++.|++||+.+++...+ ..
T Consensus        70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l-~~  147 (719)
T 1z68_A           70 DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-TF  147 (719)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEEC-CC
T ss_pred             CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEE-ec
Confidence            5667777766         78999999999876321111 2357889999999988887889999999987643221 11


Q ss_pred             ecCCCCE-----------------EEEEEeeCCCEEEEecCCC----------------------------------cEE
Q 042260           75 DQHTNNV-----------------MAVGFQCDGNWMYSGSEDG----------------------------------TVK  103 (174)
Q Consensus        75 ~~~~~~v-----------------~~~~~~~~~~~l~t~~~dg----------------------------------~v~  103 (174)
                      .++...+                 .+++|+|+|+.|++++.|.                                  .|+
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~  227 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF  227 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence            2232222                 4799999999999987652                                  788


Q ss_pred             EEeCCCCeeE--Eee-------cccCcEEEEEEccCCCEEEEeeCC----CcEEEEe----CCCCcce
Q 042260          104 IWDLRAPVCQ--MEY-------ESRAAVNTVVLHPNQTELISGDQN----GNIRVWD----LTANSCS  154 (174)
Q Consensus       104 iwd~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~  154 (174)
                      +||+.+....  ..+       .+...+..++|+|++..+++....    ..|.+||    +.++++.
T Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            9999876542  111       234568999999998766664322    2488899    7665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.39  E-value=5.9e-12  Score=101.18  Aligned_cols=144  Identities=10%  Similarity=0.056  Sum_probs=95.3

Q ss_pred             CcEEEEEeeC-CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCC--CCCCCeEEeec
Q 042260            4 PSVILATASY-DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNS--SSPQPVMSYDQ   76 (174)
Q Consensus         4 ~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~--~~~~~~~~~~~   76 (174)
                      +++.||.++. |++++||++.+++..+....+...+....|+|+ .+++++.    +...++|.+..  .....  .+..
T Consensus        32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~  108 (582)
T 3o4h_A           32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEA  108 (582)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTT
T ss_pred             CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--cccC
Confidence            4566777776 999999998766554433333357889999998 6665443    34567776644  22221  2222


Q ss_pred             CCCCEEEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC----CcEEEEeCCC
Q 042260           77 HTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN----GNIRVWDLTA  150 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~  150 (174)
                      . ......+|+++|+  .+++++.+ .+.+||+.+...........  .+++|+|+|+.|++++.+    +.|++||+.+
T Consensus       109 ~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          109 V-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             S-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             C-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            2 2234567888775  45555555 45599998876554433333  889999999999987776    7799999998


Q ss_pred             Ccce
Q 042260          151 NSCS  154 (174)
Q Consensus       151 ~~~~  154 (174)
                      +...
T Consensus       185 g~~~  188 (582)
T 3o4h_A          185 GGLR  188 (582)
T ss_dssp             CCCE
T ss_pred             CCce
Confidence            7654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.38  E-value=1.1e-11  Score=102.48  Aligned_cols=131  Identities=14%  Similarity=0.151  Sum_probs=94.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-----eEEEEEcCCCceEEEecC----------CcEEEEEcCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-----VNRLEITPNKHYLAAAGN----------PHIRLFDVNSSS   67 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~   67 (174)
                      +++.+++++  |++|++||+.++++...+..+...     .....|+|++..++.+.+          +.+.+||+.+++
T Consensus        26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~  103 (740)
T 4a5s_A           26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (740)
T ss_dssp             SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence            356778776  999999999999987766655322     244789999987765543          456799998875


Q ss_pred             CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-eeccc-CcE-----------------EEEEEc
Q 042260           68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EYESR-AAV-----------------NTVVLH  128 (174)
Q Consensus        68 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~-~~v-----------------~~~~~~  128 (174)
                      ...   +..+...+...+|+|+|+.||.+. |+.|++||+.+..... +.... ..+                 ..+.|+
T Consensus       104 ~~~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS  179 (740)
T 4a5s_A          104 LIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (740)
T ss_dssp             ECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             EEE---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC
Confidence            433   335667899999999999999884 6799999997755332 22111 112                 348899


Q ss_pred             cCCCEEEEeeC
Q 042260          129 PNQTELISGDQ  139 (174)
Q Consensus       129 ~~~~~l~s~~~  139 (174)
                      |+++.|+.++.
T Consensus       180 pDg~~la~~~~  190 (740)
T 4a5s_A          180 PNGTFLAYAQF  190 (740)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            99999987653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=3.3e-11  Score=92.75  Aligned_cols=136  Identities=11%  Similarity=0.023  Sum_probs=99.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc-----------eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeE
Q 042260            4 PSVILATASYDKTIKFWEAKSGR-----------CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~   72 (174)
                      ...++++|+.|+ +++|+++...           ....+. ... |..++|  ++..++.+.++.+++||.++..  ...
T Consensus        48 ~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~--~~~  120 (388)
T 1xip_A           48 SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVSTRNALYSLDLEELS--EFR  120 (388)
T ss_dssp             TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEEESSEEEEEESSSTT--CEE
T ss_pred             CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhh--ccC
Confidence            345788888885 6779865433           112233 344 999999  6666666688899999997754  223


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ....+...+..+.+.+.  .++.++.||.+.+||+.......   ....|.+++|+|+|  ++.|..||++++|+.....
T Consensus       121 ~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          121 TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred             ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence            34456677777766543  38889999999999998765432   35689999999999  7789999999999888776


Q ss_pred             c
Q 042260          153 C  153 (174)
Q Consensus       153 ~  153 (174)
                      +
T Consensus       194 ~  194 (388)
T 1xip_A          194 M  194 (388)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.33  E-value=4.5e-10  Score=82.17  Aligned_cols=141  Identities=11%  Similarity=0.200  Sum_probs=102.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeec--CC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQ--HT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~--~~   78 (174)
                      ++.++++...++.|.+||.. ++.+..+..  +...+..+++++++.++++. .++.|++||....   .+..+..  +.
T Consensus       131 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~  206 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGIT  206 (286)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTS
T ss_pred             CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---EEEEEccCCcc
Confidence            45678888888999999964 566555542  23458899999988876664 5778999997432   2333322  23


Q ss_pred             CCEEEEEEeeCCCEEEEecCCC-cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDG-TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .....++++++|+++++...++ .|.+||.... ....+..   ...+.+++++|+++.+++ +.|+.|++|++..
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            5788999999999999988886 9999997543 3333322   234789999999986666 5789999999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.33  E-value=3e-10  Score=84.78  Aligned_cols=147  Identities=10%  Similarity=0.079  Sum_probs=102.9

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C----CcEEEEEcCCCCCCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N----PHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ++.+++++..++.|.+||.++++.......+...+..+++++++.++++.. +    +.|.+||..++..........+.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            456777888899999999988876554434556799999999988777654 3    47999998766433121111234


Q ss_pred             CCEEEEEEeeCCCEEEEecC------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSE------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      ..+..++++++|+++++...      .+.|..+|...............++.++++|+++.++ +.+.++.|.+||+..
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            56889999999998887764      3556666665544332223334578999999998654 455678999999964

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=7.9e-11  Score=89.53  Aligned_cols=145  Identities=13%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             CcEEEEEeeCCCcEEEEECC-CCceeEEeecC-CCCeEEEEEcCCCce--EEEe--------------cCCcEEEEEcCC
Q 042260            4 PSVILATASYDKTIKFWEAK-SGRCYRTIQYP-DSQVNRLEITPNKHY--LAAA--------------GNPHIRLFDVNS   65 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--~~~~--------------~d~~i~i~d~~~   65 (174)
                      ++++|++++.+ +|.+||+. +++........ ......++++|++..  ++++              .++.+++|++..
T Consensus        50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~  128 (365)
T 1jof_A           50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE  128 (365)
T ss_dssp             TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred             CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence            45677888888 99999987 77664433211 123556889999883  4333              467899999974


Q ss_pred             -CCCCCeEE-ee-cCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCC-CCeeE--Eeec---ccCcEEEEEEccCCCEEE
Q 042260           66 -SSPQPVMS-YD-QHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLR-APVCQ--MEYE---SRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        66 -~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~-~~~~~--~~~~---~~~~v~~~~~~~~~~~l~  135 (174)
                       ++...... +. .+...+..++|+|+|++++++. .++.|++||+. +.+..  ..+.   +...+..++|+|+++.++
T Consensus       129 ~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~  208 (365)
T 1jof_A          129 TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence             32211111 11 2456799999999999887665 46799999997 55432  2222   245689999999999988


Q ss_pred             EeeC-CCcEEEEeCC
Q 042260          136 SGDQ-NGNIRVWDLT  149 (174)
Q Consensus       136 s~~~-d~~i~iwd~~  149 (174)
                      +++. ++.|.+|++.
T Consensus       209 v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          209 ALMEAGNRICEYVID  223 (365)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCeEEEEEEe
Confidence            7765 6889999876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.32  E-value=1e-09  Score=82.27  Aligned_cols=141  Identities=13%  Similarity=0.183  Sum_probs=102.8

Q ss_pred             CcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe---------ecCCCCEEE
Q 042260           15 KTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY---------DQHTNNVMA   83 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---------~~~~~~v~~   83 (174)
                      ++|.+||..+++.+..+.. .-.....+++++++.++++. .++.|+.||..... ..+..+         ..+......
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcE
Confidence            4799999998888765542 22467899999998876664 56789999975431 123333         234457889


Q ss_pred             EEEee-CCCEEEEec-CCCcEEEEeCCCCeeEEeeccc-----------CcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260           84 VGFQC-DGNWMYSGS-EDGTVKIWDLRAPVCQMEYESR-----------AAVNTVVLHPN-QTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        84 ~~~~~-~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~  149 (174)
                      +++++ +++++++.+ .++.|++||.. ......+...           ..+..++++|+ +..+++...++.|++||..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999 899999987 69999999954 4444444211           23789999998 6767777788999999999


Q ss_pred             CCcceeec
Q 042260          150 ANSCSCEL  157 (174)
Q Consensus       150 ~~~~~~~~  157 (174)
                      +++....+
T Consensus       227 ~G~~~~~~  234 (329)
T 3fvz_A          227 TKEFVREI  234 (329)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            77777665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=1.7e-10  Score=86.65  Aligned_cols=147  Identities=14%  Similarity=0.187  Sum_probs=104.9

Q ss_pred             CcEEEEEee-CCCcEEEEECCCCceeEEeecCC----------CCeEEEEEcCC-CceEEEe-cCCcEEEEEcCCCCCCC
Q 042260            4 PSVILATAS-YDKTIKFWEAKSGRCYRTIQYPD----------SQVNRLEITPN-KHYLAAA-GNPHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s~s-~D~~v~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~   70 (174)
                      .+.++++.+ .++.|++|| .+|+.+..+....          .....++++|+ +.++++. .++.|++||..+++...
T Consensus       154 ~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             TCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence            466777776 689999999 5677666653221          23788999997 6665554 57789999998654322


Q ss_pred             eEEeecCCCCEEEEEEee------CCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCC
Q 042260           71 VMSYDQHTNNVMAVGFQC------DGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~------~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ......+...+..+++.|      +++..++...+..|++||..+......+.    +...+..++++|++..+++...+
T Consensus       233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence            222234456677888887      44444445556799999998888777663    33558999999999878888889


Q ss_pred             CcEEEEeCCCC
Q 042260          141 GNIRVWDLTAN  151 (174)
Q Consensus       141 ~~i~iwd~~~~  151 (174)
                      +.|++|++...
T Consensus       313 ~~I~~~~~~~~  323 (329)
T 3fvz_A          313 NTVWKFTLTEK  323 (329)
T ss_dssp             CCEEEEEEEEC
T ss_pred             CEEEEEeCCcc
Confidence            99999998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.28  E-value=6.2e-11  Score=98.02  Aligned_cols=147  Identities=7%  Similarity=0.025  Sum_probs=103.1

Q ss_pred             CcEEEEEeeCC---------CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASYD---------KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~D---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      +++.|+.++.+         +.+.+||+++++... +..+...+...+|+|+|..++...++.|++||+.++.... .+.
T Consensus        72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~  149 (740)
T 4a5s_A           72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITW  149 (740)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCS
T ss_pred             CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcC
Confidence            56677777776         556799999987653 4445567899999999998888788999999997765322 222


Q ss_pred             ecCCCCE-----------------EEEEEeeCCCEEEEecCCC------------------------------------c
Q 042260           75 DQHTNNV-----------------MAVGFQCDGNWMYSGSEDG------------------------------------T  101 (174)
Q Consensus        75 ~~~~~~v-----------------~~~~~~~~~~~l~t~~~dg------------------------------------~  101 (174)
                      .++...+                 ..+.|+|+|+.|+.++.|.                                    .
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            2332222                 3588999999999875321                                    4


Q ss_pred             EEEEeCCC---C---eeEEeec------ccCcEEEEEEccCCCEEEEee----CCCcEEEEeCCCCc
Q 042260          102 VKIWDLRA---P---VCQMEYE------SRAAVNTVVLHPNQTELISGD----QNGNIRVWDLTANS  152 (174)
Q Consensus       102 v~iwd~~~---~---~~~~~~~------~~~~v~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~  152 (174)
                      +++||+.+   .   .......      +...+..++|+|+++.++...    .+..|++||+.++.
T Consensus       230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            78899887   5   3222111      345588999999999665442    23469999999876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.26  E-value=3.9e-10  Score=85.62  Aligned_cols=146  Identities=8%  Similarity=0.028  Sum_probs=101.4

Q ss_pred             CcEEEEEeeC-CCc--EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASY-DKT--IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~-D~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +++.|+.++. ++.  |.+||+.+++.......+...+....|+|++..++.+ .+..+++||+.+++...+  ...+..
T Consensus        46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--~~~~~~  123 (388)
T 3pe7_A           46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--YQVPAE  123 (388)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTT
T ss_pred             CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--eechhh
Confidence            4666666665 674  8888999888776665555445567899999876654 566899999988754333  333444


Q ss_pred             CEEEEE--EeeCCCEEEE----------------------ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEE
Q 042260           80 NVMAVG--FQCDGNWMYS----------------------GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTEL  134 (174)
Q Consensus        80 ~v~~~~--~~~~~~~l~t----------------------~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  134 (174)
                      .+....  ++++++.++.                      ...+..|.+||+.+............+..+.|+| +++.|
T Consensus       124 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l  203 (388)
T 3pe7_A          124 WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTV  203 (388)
T ss_dssp             EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred             cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEE
Confidence            443333  4788888774                      2345789999998876655555566789999999 99988


Q ss_pred             EEeeCC------CcEEEEeCCCC
Q 042260          135 ISGDQN------GNIRVWDLTAN  151 (174)
Q Consensus       135 ~s~~~d------~~i~iwd~~~~  151 (174)
                      +..+.+      ..|.++|....
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          204 AFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             EEEECSCTTTSSCSEEEEETTSC
T ss_pred             EEEEecCCCCCcceEEEEeCCCC
Confidence            766543      36788887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.25  E-value=2.3e-09  Score=78.41  Aligned_cols=147  Identities=13%  Similarity=0.176  Sum_probs=105.5

Q ss_pred             CcEEEEEeeC-CCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEee--cCC
Q 042260            4 PSVILATASY-DKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYD--QHT   78 (174)
Q Consensus         4 ~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~   78 (174)
                      ++.++++... ++.|++|| .+++.+..+.. +...+..+++++++.++++. .++.|.+||....   ....+.  .+.
T Consensus        88 ~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~  163 (286)
T 1q7f_A           88 SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHL  163 (286)
T ss_dssp             TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTC
T ss_pred             CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCcc
Confidence            4566666643 88999999 56777666643 23468899999998877664 4678999996432   222232  344


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCCcce
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNG-NIRVWDLTANSCS  154 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~  154 (174)
                      .....++++++|+.+++...++.|++||.... ....+...   ..+..++++|+++.+++...++ .|.+||.. +...
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~  241 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI  241 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE
Confidence            56889999999998888888999999998654 33344322   5689999999998888877775 99999964 4444


Q ss_pred             ee
Q 042260          155 CE  156 (174)
Q Consensus       155 ~~  156 (174)
                      ..
T Consensus       242 ~~  243 (286)
T 1q7f_A          242 SA  243 (286)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.23  E-value=7.7e-10  Score=84.02  Aligned_cols=147  Identities=10%  Similarity=-0.047  Sum_probs=102.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEE--EEcCCCceEEEe-----------------------cCCcE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRL--EITPNKHYLAAA-----------------------GNPHI   58 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-----------------------~d~~i   58 (174)
                      +++.|+.++.++.|++||+.+++.......+...+...  .+++++..+++.                       .+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            56678888889999999999998776666555544333  347888777632                       23468


Q ss_pred             EEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCC------CcEEEEeCCCCeeEEeeccc--CcEEEEEEcc
Q 042260           59 RLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSED------GTVKIWDLRAPVCQMEYESR--AAVNTVVLHP  129 (174)
Q Consensus        59 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~  129 (174)
                      .+||+.+++...   +..+...+..+.|+| +|+.|+..+.+      ..|.++|.............  ..+...+|+|
T Consensus       171 ~~~d~~~g~~~~---l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          171 MRVDLKTGESTV---ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP  247 (388)
T ss_dssp             EEEETTTCCEEE---EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT
T ss_pred             EEEECCCCceEE---eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC
Confidence            899998764332   334556789999999 99988877653      37888887655433322322  3577889999


Q ss_pred             CCCEEEEeeC-CC----cEEEEeCCCCcc
Q 042260          130 NQTELISGDQ-NG----NIRVWDLTANSC  153 (174)
Q Consensus       130 ~~~~l~s~~~-d~----~i~iwd~~~~~~  153 (174)
                      +++.|+..+. ++    .|.+||+.+++.
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            9997765432 22    399999998763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.21  E-value=2.7e-09  Score=80.11  Aligned_cols=152  Identities=5%  Similarity=-0.075  Sum_probs=110.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC----
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT----   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~----   78 (174)
                      .+.+.++...+++|.+||.++++.+..+.. ......+++++++.++++. .++.|.+||..+.+..  .......    
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i~~g~~~~~  129 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYIECPDMDME  129 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEEECTTCCTT
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEEEcCCcccc
Confidence            356777888889999999999999888853 3568889998888766665 6788999999876432  2222211    


Q ss_pred             -CCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC----------CcEEEE
Q 042260           79 -NNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN----------GNIRVW  146 (174)
Q Consensus        79 -~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------~~i~iw  146 (174)
                       .....+++ .+++.+++.. .++.|.++|+.+.....++........++++|+++.+++...+          +.|.++
T Consensus       130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence             13445666 4555566554 4889999999998877776665667889999999877666544          789999


Q ss_pred             eCCCCcceeecCc
Q 042260          147 DLTANSCSCELGL  159 (174)
Q Consensus       147 d~~~~~~~~~~~~  159 (174)
                      |..+.+....+..
T Consensus       209 d~~t~~v~~~~~~  221 (328)
T 3dsm_A          209 DAETFTVEKQFKF  221 (328)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECCCCeEEEEEec
Confidence            9998876655543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.20  E-value=2.6e-10  Score=92.72  Aligned_cols=144  Identities=8%  Similarity=0.012  Sum_probs=97.0

Q ss_pred             cEEEEEe--eCCCcEEEEECCCCceeEEeecCCCCeE---------EEEEc--CCCce-EEEecC--CcEEEEEcC--C-
Q 042260            5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVN---------RLEIT--PNKHY-LAAAGN--PHIRLFDVN--S-   65 (174)
Q Consensus         5 ~~~l~s~--s~D~~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~~d--~~i~i~d~~--~-   65 (174)
                      ..++++.  +.++..+||....+.....+..+...+.         ...|+  |++.. ++.+.+  ..|.++++.  . 
T Consensus        35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~  114 (662)
T 3azo_A           35 EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG  114 (662)
T ss_dssp             EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred             eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence            3345555  5688999998654444555554544444         44454  88877 665554  345555554  1 


Q ss_pred             CCCCCeEEeec-----CCCCEEEEEEeeCCCEEEEecCC----------CcEEEEeCCC------CeeEEee-cccCcEE
Q 042260           66 SSPQPVMSYDQ-----HTNNVMAVGFQCDGNWMYSGSED----------GTVKIWDLRA------PVCQMEY-ESRAAVN  123 (174)
Q Consensus        66 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d----------g~v~iwd~~~------~~~~~~~-~~~~~v~  123 (174)
                      +..   ..+..     |...+..++|+|+|+.|+.++.+          ..|.+||+..      ....... .....+.
T Consensus       115 ~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~  191 (662)
T 3azo_A          115 AVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT  191 (662)
T ss_dssp             CCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC
T ss_pred             CCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc
Confidence            322   22223     55678899999999999998877          5899999987      5544333 3456678


Q ss_pred             EEEEccCCCEEEEeeCC--------CcEEEEeCC-CC
Q 042260          124 TVVLHPNQTELISGDQN--------GNIRVWDLT-AN  151 (174)
Q Consensus       124 ~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~  151 (174)
                      .++|+|+++.|+.++.+        ..|.+||+. ++
T Consensus       192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            89999999999877754        379999998 45

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.18  E-value=2.9e-09  Score=79.98  Aligned_cols=161  Identities=10%  Similarity=0.105  Sum_probs=116.6

Q ss_pred             cEEEEEee-CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C----------CcEEEEEcCCCCCCCeE
Q 042260            5 SVILATAS-YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N----------PHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s-~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----------~~i~i~d~~~~~~~~~~   72 (174)
                      +.++++.. .+++|.++|+++++.+..+.... ....+.+++++.++++.. +          +.+.++|..+.+.  ..
T Consensus       141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~  217 (328)
T 3dsm_A          141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EK  217 (328)
T ss_dssp             TEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EE
T ss_pred             CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--EE
Confidence            44555554 58899999999998888776543 456788999888776653 2          5799999876642  22


Q ss_pred             EeecC-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-ee-cc-cCcEEEEEEcc-CCCEEEEe----eCCCcE
Q 042260           73 SYDQH-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EY-ES-RAAVNTVVLHP-NQTELISG----DQNGNI  143 (174)
Q Consensus        73 ~~~~~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~~~-~~~~l~s~----~~d~~i  143 (174)
                      .+... ......++++++++.++.+..  .|.+||..+.+... .+ .. ...+..++++| ++...++.    ..++.|
T Consensus       218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            22221 236789999999998887655  89999998765431 11 11 35688999999 45555555    568899


Q ss_pred             EEEeCCCCcceeecCcccceeEEEEEee
Q 042260          144 RVWDLTANSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      .+||.. ++...+++....+..+.|=|+
T Consensus       296 ~v~d~~-g~~~~~i~~G~~P~~~~~~~~  322 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFYVGIIPGAFCWKLE  322 (328)
T ss_dssp             EEECTT-CCEEEEEEEEESEEEEEEECC
T ss_pred             EEECCC-CCEEEEEEeccCcceEEEecc
Confidence            999998 888888888888888888665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.17  E-value=2.8e-09  Score=78.40  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe-e-cCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY-D-QHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~-~-~~~~~v~   82 (174)
                      .+++++..++.|..||..++  ...+..+...+.++++++++.++++.. ++.|.+||..+++....... . .....+.
T Consensus        41 ~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  118 (296)
T 3e5z_A           41 AVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN  118 (296)
T ss_dssp             EEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred             EEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence            37888999999999999877  566666667789999999998877664 57899999876643322111 1 1123456


Q ss_pred             EEEEeeCCCEEEE----ec-------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260           83 AVGFQCDGNWMYS----GS-------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV  145 (174)
Q Consensus        83 ~~~~~~~~~~l~t----~~-------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  145 (174)
                      .++++++|+++++    |.             ..+.|..+|.. ............++.++|+|+++.+++.+.++.|.+
T Consensus       119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~  197 (296)
T 3e5z_A          119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR  197 (296)
T ss_dssp             CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence            7889999999887    33             13456666655 333333344456789999999998877777889999


Q ss_pred             EeCC
Q 042260          146 WDLT  149 (174)
Q Consensus       146 wd~~  149 (174)
                      ||+.
T Consensus       198 ~~~~  201 (296)
T 3e5z_A          198 YCLN  201 (296)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9997

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.17  E-value=1e-09  Score=89.24  Aligned_cols=151  Identities=7%  Similarity=0.022  Sum_probs=101.5

Q ss_pred             CcEEEEEeeCC----------CcEEEEECCC------CceeEEee-cCCCCeEEEEEcCCCceEEE-ecC--------Cc
Q 042260            4 PSVILATASYD----------KTIKFWEAKS------GRCYRTIQ-YPDSQVNRLEITPNKHYLAA-AGN--------PH   57 (174)
Q Consensus         4 ~~~~l~s~s~D----------~~v~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~-~~d--------~~   57 (174)
                      +++.|+.++.|          .+|++||+.+      ++.. .+. .+...+..+.|+|++..++. +.+        ..
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            45567777776          5899999988      5543 333 34456778899999987764 433        36


Q ss_pred             EEEEEcC-CCCC-CCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeecccC---------cEEE
Q 042260           58 IRLFDVN-SSSP-QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYESRA---------AVNT  124 (174)
Q Consensus        58 i~i~d~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~---------~v~~  124 (174)
                      |.+||+. ++.. ........+...+..+.|+++|++++++..++  .|.+||+.............         .+..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            8999997 3411 11222234567899999999999888888888  56666665554433222211         1567


Q ss_pred             EEEccCCCEEEEeeCCCcEEEE--eCCCCcceeec
Q 042260          125 VVLHPNQTELISGDQNGNIRVW--DLTANSCSCEL  157 (174)
Q Consensus       125 ~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~  157 (174)
                      ++|+|++..++++.. +.++||  |+..+. ..++
T Consensus       299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            889999999999988 999999  544443 3343

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.16  E-value=1.5e-08  Score=77.19  Aligned_cols=83  Identities=16%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             EEEeeCCCEEEEecC-----------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC-
Q 042260           84 VGFQCDGNWMYSGSE-----------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN-  151 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  151 (174)
                      ++++++++.++.+..           ++.|.+||+.+.+.+.++..+. +..++|+|+++.|+++.. ++|.+||..++ 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~  336 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE  336 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence            578888777665432           3489999999999888877666 999999999999988876 89999999999 


Q ss_pred             -cceeec-CcccceeEEEE
Q 042260          152 -SCSCEL-GLQYGLRTFLF  168 (174)
Q Consensus       152 -~~~~~~-~~~~~~~~~~~  168 (174)
                       +...++ .....+..+.+
T Consensus       337 l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          337 PKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             CEEEEEETTSCSSEEEEEE
T ss_pred             ceeeEEeccCCCCcEEEEe
Confidence             888775 55666666654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.15  E-value=1.1e-09  Score=84.38  Aligned_cols=122  Identities=15%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +..|+++ .++.|++||+.+.........+...+..+.+.+.+ +++...|+.+.+||+..+...      .+...|.++
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~------~~~~~Vs~v  168 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTK------QLAQNVTSF  168 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEE------EEEESEEEE
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCccc------cccCCceEE
Confidence            3466677 88999999988766555555566678777666543 566678999999999865421      144689999


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCee--EEee------c----ccCcEEEEEEccCCCEEEE
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEY------E----SRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~l~s  136 (174)
                      +|+++|  ++.|..||.+++|+.....+  ..++      .    +...|.++.|.+++.++++
T Consensus       169 ~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          169 DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999  67899999999999887665  4444      2    4577999999999988876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=4.2e-09  Score=76.09  Aligned_cols=148  Identities=7%  Similarity=-0.017  Sum_probs=104.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.++++...++.|.+|+..+.............+.++++++++.++++. .++.|.+||......  ......+.....
T Consensus       118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~  195 (270)
T 1rwi_B          118 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPW  195 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEE
T ss_pred             CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--EeecccCCCCce
Confidence            45567777778889999766544332222222356789999988776654 467899999865421  111122336688


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      ++++.++|+.+++...++.|.+||........... ....+.+++++|+++.+++...++.|+++++..++.
T Consensus       196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            99999999888888889999999987654333222 225689999999999888888899999999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.14  E-value=5.7e-09  Score=76.75  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=109.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEee----
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYD----   75 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~----   75 (174)
                      .++.+++  +.++.|..||. +|+.+..+..+ ...+.++.+.+++.++++..  ++.+..+|. .++......+.    
T Consensus        46 pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~  121 (276)
T 3no2_A           46 KAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE  121 (276)
T ss_dssp             TTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred             CCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence            3566777  45778999998 79988888764 34678888999998877653  334444453 23211111111    


Q ss_pred             cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      .+......+...++|+++++...++.|..||.. .+.+.++.....+.++...++++.+++++.++.|..+|..+++.++
T Consensus       122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred             cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence            111233445678899999999999999999998 7777777766666778889999999998888899999999999888


Q ss_pred             ecC
Q 042260          156 ELG  158 (174)
Q Consensus       156 ~~~  158 (174)
                      ++.
T Consensus       201 ~~~  203 (276)
T 3no2_A          201 RVN  203 (276)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=7e-08  Score=77.79  Aligned_cols=151  Identities=10%  Similarity=0.081  Sum_probs=107.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.++++...+++|.++|..+++.+..+... ..+..+.++|++.++. ++.++.+.+||+.......+..... ......
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~  244 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS  244 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence            467888899999999999999999888754 3577899999988755 4567789999996222233333333 234678


Q ss_pred             EEEe----eCCCEEEEecC-CCcEEEEeCCCCeeEEeecc----------------------------------------
Q 042260           84 VGFQ----CDGNWMYSGSE-DGTVKIWDLRAPVCQMEYES----------------------------------------  118 (174)
Q Consensus        84 ~~~~----~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~----------------------------------------  118 (174)
                      ++++    |+|++++.+.. ++.+.++|..+.+.+..+..                                        
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            8999    69998777654 58999999876554433211                                        


Q ss_pred             ----------------cCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeec
Q 042260          119 ----------------RAAVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       119 ----------------~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~  157 (174)
                                      .....++.|+|++++++++. .++.|.++|..+++.....
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence                            01123567899999877655 4678999999988765443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.07  E-value=1.6e-09  Score=82.28  Aligned_cols=148  Identities=6%  Similarity=-0.079  Sum_probs=97.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEE-------------------EEEcCCCceEEE------ecCCcE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNR-------------------LEITPNKHYLAA------AGNPHI   58 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~------~~d~~i   58 (174)
                      +++.|+.++.++.|++||+.+++.......+......                   ..++|++..++.      ..+..+
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            5667888888889999999988765555433332222                   234565554332      234468


Q ss_pred             EEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCC------CcEEEEeCCCCeeEEeecc--cCcEEEEEEcc
Q 042260           59 RLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSED------GTVKIWDLRAPVCQMEYES--RAAVNTVVLHP  129 (174)
Q Consensus        59 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~  129 (174)
                      .+||+.+++...+   ..+...+..+.|+| +++.|+..+.+      ..|.+||+...........  ...+..++|+|
T Consensus       171 ~~~d~~~g~~~~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          171 IKVDIETGELEVI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEETTTCCEEEE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             EEEECCCCcEEee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            8999977643322   24567788999999 78876665543      4688889876543322222  23578899999


Q ss_pred             CCCEEEEeeCC-----CcEEEEeCCCCcce
Q 042260          130 NQTELISGDQN-----GNIRVWDLTANSCS  154 (174)
Q Consensus       130 ~~~~l~s~~~d-----~~i~iwd~~~~~~~  154 (174)
                      +++.|+.++.+     +.|.+||+.+++..
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLENE  277 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCeE
Confidence            99987766543     44999999877543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.05  E-value=2.8e-08  Score=73.00  Aligned_cols=161  Identities=9%  Similarity=0.059  Sum_probs=104.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEe----c-----------C-CcEEEEEc
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAA----G-----------N-PHIRLFDV   63 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~----~-----------d-~~i~i~d~   63 (174)
                      ++.++++...++.|.+||.++++........    ...+..++++|++.++++.    .           + +.-.+|.+
T Consensus        79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence            4667777777789999999888754332211    1245679999999887752    1           0 12245555


Q ss_pred             CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-CCee---EEee-cccCcEEEEEEccCCCEEEEee
Q 042260           64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-APVC---QMEY-ESRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~---~~~~-~~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      ....  .......+......++|+++++.+++.+.++.|.+||+. ....   ...+ .....+..+++.++++..++. 
T Consensus       159 ~~~g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          159 APDG--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             CTTS--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred             CCCC--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence            4331  223334456677899999999988888889999999986 3332   1222 123446789999999866655 


Q ss_pred             CCCcEEEEeCCCCcceeecCcccceeEEEEE
Q 042260          139 QNGNIRVWDLTANSCSCELGLQYGLRTFLFY  169 (174)
Q Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (174)
                       ++.|.+||.+ +.....+..+..+....|.
T Consensus       236 -~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~  264 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRVLTPQTTSNLCFG  264 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEEECSSCCCEEEEE
T ss_pred             -CCeEEEECCC-CCEEEEEECCCCceeEEEE
Confidence             7889999987 5555555443334444443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.05  E-value=2.3e-09  Score=88.12  Aligned_cols=147  Identities=11%  Similarity=0.064  Sum_probs=94.1

Q ss_pred             CcEEEE-----EeeCCCcEEEEECCCCcee-EEeecCCCCeEEEEEcCCCceEEE-ecCCc-------------EEEEEc
Q 042260            4 PSVILA-----TASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAA-AGNPH-------------IRLFDV   63 (174)
Q Consensus         4 ~~~~l~-----s~s~D~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~-------------i~i~d~   63 (174)
                      +++.||     +|+.+.+|++||+.+|+.+ .. .........++|+|++..++. +.+..             |++|++
T Consensus       131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l  209 (695)
T 2bkl_A          131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL  209 (695)
T ss_dssp             TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred             CCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence            455565     5556678999999998865 21 112222267899999876554 44443             999999


Q ss_pred             CCCCCCCeEEee--cCCCCEEEEEEeeCCCEEEEecCCC----cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260           64 NSSSPQPVMSYD--QHTNNVMAVGFQCDGNWMYSGSEDG----TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        64 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      .++.......+.  .+...+..+.|+++|++|+.++.++    .|.+||...............+....+ +++..++..
T Consensus       210 ~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s  288 (695)
T 2bkl_A          210 GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLT  288 (695)
T ss_dssp             TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEE
T ss_pred             CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEE
Confidence            876533233333  3446788999999999988877666    677777654433332333334455555 555544443


Q ss_pred             e---CCCcEEEEeCCCCc
Q 042260          138 D---QNGNIRVWDLTANS  152 (174)
Q Consensus       138 ~---~d~~i~iwd~~~~~  152 (174)
                      .   .++.|.+||+.++.
T Consensus       289 ~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             CTTCTTCEEEEEBTTBCS
T ss_pred             CCCCCCCEEEEEeCCCCC
Confidence            3   25789999998764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.04  E-value=2.5e-08  Score=71.95  Aligned_cols=148  Identities=7%  Similarity=-0.018  Sum_probs=99.3

Q ss_pred             CcEEEE-EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee-cCCCCE
Q 042260            4 PSVILA-TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD-QHTNNV   81 (174)
Q Consensus         4 ~~~~l~-s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v   81 (174)
                      ++.+++ +.+.++.|.+||..++............+.++++++++.++++..++.|..||......   ..+. ......
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~---~~~~~~~~~~p  110 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---TVLPFDGLNYP  110 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---EECCCCSCSSE
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE---eeeecCCcCCC
Confidence            455666 55778899999876554322111222457789999988877665577899999765422   1121 223568


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ..+++.++|+.+++...++.|.+||..+....... .....+..++++|+++.+++...++.|..||.......
T Consensus       111 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          111 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             cceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence            89999999998888888899999987654433221 22245788999999987777767789999998876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.02  E-value=6.4e-09  Score=79.20  Aligned_cols=133  Identities=9%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEeecC----
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYDQH----   77 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~----   77 (174)
                      .|++|.+||..+++.+..+.....+  .++++|++..++.+.           ++.|.+||..+.+.  .......    
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCcccc
Confidence            4789999999999988887765443  899999998776552           45699999876533  2222221    


Q ss_pred             --CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC
Q 042260           78 --TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        78 --~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~  150 (174)
                        ......++++++|++++.+..  ++.|.+||+.+.+...+ +..... ..+.+.|++ ..+++.+.||.+..|++..
T Consensus       105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence              234567899999999988763  68999999999887766 554332 335567765 5677788889998888864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.01  E-value=1.7e-08  Score=83.03  Aligned_cols=147  Identities=10%  Similarity=0.045  Sum_probs=95.1

Q ss_pred             CcEEEEEeeC-CC----cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCc----------------EEEE
Q 042260            4 PSVILATASY-DK----TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPH----------------IRLF   61 (174)
Q Consensus         4 ~~~~l~s~s~-D~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~----------------i~i~   61 (174)
                      +++.|+.++. +|    +|++||+.+|+.......+ ..+..++|+|++..|+ ++.+..                |++|
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~  213 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence            4455554433 33    8999999999876543222 2366799999987655 444433                8999


Q ss_pred             EcCCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecC-----CCcEEEEeCCC------C--eeEEeecccCcEEEEE
Q 042260           62 DVNSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSE-----DGTVKIWDLRA------P--VCQMEYESRAAVNTVV  126 (174)
Q Consensus        62 d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~------~--~~~~~~~~~~~v~~~~  126 (174)
                      ++.++.......+..  +...+..+.|+++|++|+..+.     +..|.+||+..      +  .......+...+.. .
T Consensus       214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~  292 (710)
T 2xdw_A          214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y  292 (710)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred             ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence            997764332333333  3455788999999999887764     67899999875      3  22222223333333 4


Q ss_pred             EccCCCEEEEeeC----CCcEEEEeCCCCc
Q 042260          127 LHPNQTELISGDQ----NGNIRVWDLTANS  152 (174)
Q Consensus       127 ~~~~~~~l~s~~~----d~~i~iwd~~~~~  152 (174)
                      ++|++..|+..+.    ++.|.+||+.++.
T Consensus       293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            7788887765543    3369999998763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.99  E-value=3.5e-11  Score=92.08  Aligned_cols=145  Identities=13%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC-EE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN-VM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~-v~   82 (174)
                      +..+++++.|+.|+.||.++|+.+..+..  ..+....+..++.++++ +.|+.++.||..+++..  ..+..+... +.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~--w~~~~~~~~~~~   84 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL--TKLPFTIPELVQ   84 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS--EECSCCHHHHHT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee--eeeeccCccccc
Confidence            34688899999999999999999877765  33444334445545544 57889999999776432  222211110 00


Q ss_pred             -EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           83 -AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        83 -~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                       ...+ ..+..+++++.|+.++.||.++.+....+.....   ..++|++..|++++.|+.|+.||.++++..++.
T Consensus        85 ~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           85 ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             0001 1345678888999999999998877665544332   345667888999999999999999998876654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.97  E-value=5.8e-08  Score=72.30  Aligned_cols=139  Identities=11%  Similarity=0.058  Sum_probs=97.4

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      +++.+.++.++.|   .++....+..+...+.+++|++++.++++. .++.|.+||..+++....  ...+...+.++++
T Consensus        20 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~i~~   94 (333)
T 2dg1_A           20 AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FVSHKANPAAIKI   94 (333)
T ss_dssp             SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECSSSSEEEEEE
T ss_pred             eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--eeCCCCCcceEEE
Confidence            3444667788888   445566666555667899999998877654 567899999876643222  2235577999999


Q ss_pred             eeCCCEEEEecCC----CcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCC
Q 042260           87 QCDGNWMYSGSED----GTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTAN  151 (174)
Q Consensus        87 ~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~  151 (174)
                      +++++++++...+    +.|.+||.........+.   ....+++++++|+++.+++...      .+.|..+|...+
T Consensus        95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A           95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence            9999988887766    789999988765442222   3356899999999987776543      245666665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.95  E-value=2e-08  Score=75.11  Aligned_cols=117  Identities=17%  Similarity=0.223  Sum_probs=80.4

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C---Cc--EEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N---PH--IRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d---~~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .++.|.+||+.+++... +    ..+....|+|++..++... +   +.  |.+||+.+++...+.  . +.. +..+.|
T Consensus        41 ~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~--~-~~~-~~~~~w  111 (347)
T 2gop_A           41 YENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL--E-AKN-IRSLEW  111 (347)
T ss_dssp             EEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE--E-ESE-EEEEEE
T ss_pred             ccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE--c-CCC-ccceeE
Confidence            36779999998876533 2    3578899999998765432 2   33  677787665322222  2 223 889999


Q ss_pred             eeCCCEEEEecCC---------------------------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260           87 QCDGNWMYSGSED---------------------------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        87 ~~~~~~l~t~~~d---------------------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      +|+|+.|+.++.+                           ..|.+||+.+......+... .+..++|+|++ .++++..
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEEC
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEec
Confidence            9999988887632                           57999999887652223223 77889999999 7777654


Q ss_pred             C
Q 042260          140 N  140 (174)
Q Consensus       140 d  140 (174)
                      +
T Consensus       190 ~  190 (347)
T 2gop_A          190 R  190 (347)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.93  E-value=4.2e-07  Score=74.79  Aligned_cols=153  Identities=7%  Similarity=0.038  Sum_probs=98.4

Q ss_pred             CcEEEEEeeCCCc----------------EEEEECCCCce--eEEeec--CCCCeEEEEEcCCCceEEEe-c-----CCc
Q 042260            4 PSVILATASYDKT----------------IKFWEAKSGRC--YRTIQY--PDSQVNRLEITPNKHYLAAA-G-----NPH   57 (174)
Q Consensus         4 ~~~~l~s~s~D~~----------------v~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~-~-----d~~   57 (174)
                      +++.|+.++.|+.                |++|++.+++.  ...+..  +...+....|+|++..++.. .     +..
T Consensus       181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence            5566777777766                99999988763  222222  23447789999999876543 2     457


Q ss_pred             EEEEEcCC------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC----CcEEEEeCCCCe---eEEeeccc--CcE
Q 042260           58 IRLFDVNS------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED----GTVKIWDLRAPV---CQMEYESR--AAV  122 (174)
Q Consensus        58 i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~~~---~~~~~~~~--~~v  122 (174)
                      +.+||+.+      +.. ....+..+...+.. .++++|+.|+..+.+    +.|.+||+..+.   ......+.  ..+
T Consensus       261 l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  338 (710)
T 2xdw_A          261 LWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (710)
T ss_dssp             EEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred             EEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence            89999875      321 23334445444444 477888877665543    369999998753   12222332  367


Q ss_pred             EEEEEccCCCEEEEeeCCCc--EEEEeCCCCcceeecC
Q 042260          123 NTVVLHPNQTELISGDQNGN--IRVWDLTANSCSCELG  158 (174)
Q Consensus       123 ~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~  158 (174)
                      ..+.+.+++..+++...|+.  |.+||+.++....++.
T Consensus       339 ~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence            88899877778888888885  6667876666555544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.92  E-value=2.8e-08  Score=75.32  Aligned_cols=137  Identities=8%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEE-EecC------CcEEEEEcCCCCCCCeEEeecC-CCCEE
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLA-AAGN------PHIRLFDVNSSSPQPVMSYDQH-TNNVM   82 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d------~~i~i~d~~~~~~~~~~~~~~~-~~~v~   82 (174)
                      ..+..|++||+.+++..... .+...+..+.|+| ++..++ .+.+      ..|.+||+..+....+.  ... ...+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~  241 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--EHAEGESCT  241 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--CCCTTEEEE
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--ccCCCcccc
Confidence            35567999999988765444 3455688999999 666443 3322      35778887654322221  111 23577


Q ss_pred             EEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEee----------------CC
Q 042260           83 AVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGD----------------QN  140 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------------~d  140 (174)
                      .+.|+|+|+.|+..+.+     +.|.+||+.+.......... ... ..|+| +++.++.++                .+
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            88999999987776543     44999999876543322222 233 88999 999887654                24


Q ss_pred             CcEEEEeCCCCcc
Q 042260          141 GNIRVWDLTANSC  153 (174)
Q Consensus       141 ~~i~iwd~~~~~~  153 (174)
                      ..|.+||+..+..
T Consensus       320 ~~i~~~d~~~~~~  332 (396)
T 3c5m_A          320 PFLYVLNTKAKSA  332 (396)
T ss_dssp             CEEEEEETTTTBC
T ss_pred             CcEEEEecccCce
Confidence            6799999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.92  E-value=7.6e-08  Score=71.92  Aligned_cols=124  Identities=10%  Similarity=0.099  Sum_probs=80.6

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC------C-cEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN------P-HIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d------~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      ..|++||+.+++.+..+.. . .+..+.|+|++ +++++ .+      . ...+|.+.+++.   ..+..+ ..+...  
T Consensus       152 ~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~l~~~-~~~~~~--  222 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EKMFEK-VSFYAV--  222 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EEEEEE-ESEEEE--
T ss_pred             ceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EEeccC-cceeeE--
Confidence            5799999998877455544 3 68889999999 65554 22      1 445665543322   222223 444444  


Q ss_pred             eeCCCEEEEecCC--------CcEEEEeCCCCeeEEee-cccCcEEE-EEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           87 QCDGNWMYSGSED--------GTVKIWDLRAPVCQMEY-ESRAAVNT-VVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        87 ~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~-~~~~~v~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +|+|+.|+.++.+        ..|.+||  +....... .+...+.. +.|+ ++ .+++++.++.++|| +.++.
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence            8999988877644        3688888  33333222 23456775 8999 77 88888999999999 87544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.84  E-value=8.1e-08  Score=79.47  Aligned_cols=145  Identities=17%  Similarity=0.120  Sum_probs=90.5

Q ss_pred             CcEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCC--------------cEEEEEc
Q 042260            4 PSVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNP--------------HIRLFDV   63 (174)
Q Consensus         4 ~~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~--------------~i~i~d~   63 (174)
                      +++.|+.++.+     .+|++||+.+|+.+.... +...+..++|+|+ ..+ ++..+.              .|++|++
T Consensus       173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL  250 (741)
T ss_dssp             TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence            44455544433     459999999998765321 2222356889999 644 444333              3888898


Q ss_pred             CCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCC-----cEEEEeCCCC--e-eEEeecccCcEEEEEEccCCCE
Q 042260           64 NSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDG-----TVKIWDLRAP--V-CQMEYESRAAVNTVVLHPNQTE  133 (174)
Q Consensus        64 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~~~~~~~  133 (174)
                      .++.......+..  +...+..+.|+++|++|+..+.++     .|.+||+.++  . ..........+.... .|++..
T Consensus       251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence            7654322333333  223588999999999888776543     8999999765  3 222222333333333 478887


Q ss_pred             EEEeeC----CCcEEEEeCCCC
Q 042260          134 LISGDQ----NGNIRVWDLTAN  151 (174)
Q Consensus       134 l~s~~~----d~~i~iwd~~~~  151 (174)
                      |+..+.    ++.|.+||+..+
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSS
T ss_pred             EEEEECCCCCCCEEEEEeCCCC
Confidence            776654    445999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.83  E-value=4.3e-06  Score=60.69  Aligned_cols=145  Identities=10%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+.++...++.|..||.. ++.. .+.  .....+..+++++++.++++.. ++.+..||.. ++. ...........
T Consensus        25 ~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~  100 (299)
T 2z2n_A           25 KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSA  100 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCC
T ss_pred             CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCC
Confidence            45566666667889999988 5433 332  2345688999999888777654 6678888875 221 11112223457


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      +..+++.++++..++...++.|..||........... ....+..+++.++++..++...++.|..||. +++.
T Consensus       101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  173 (299)
T 2z2n_A          101 PYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI  173 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence            8899999999988888888999999984332222222 2356899999999987777766788999998 5443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=5.1e-10  Score=85.60  Aligned_cols=152  Identities=8%  Similarity=0.050  Sum_probs=80.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEE-EEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNR-LEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.++++++.|+.|+.||.++|+.+..+..+.. .+.. ..+..++.+++++.++.++.||..+++..  ..+..+.    
T Consensus        49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~--w~~~~~~----  122 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ--QTLSSAF----  122 (369)
T ss_dssp             -CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred             CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE--EEecCCC----
Confidence            34677888999999999999987665543211 1100 01112344555566788999999887532  2222221    


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC---CEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ---TELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ...+.+++..++.++.|+.|+.||.++.+....+.... ....++.++.   ..+++++.||.|..||.++++..++..+
T Consensus       123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             ----------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            12344578889999999999999998876554433211 1222333322   5677888999999999999998887664


Q ss_pred             ccce
Q 042260          160 QYGL  163 (174)
Q Consensus       160 ~~~~  163 (174)
                      ...+
T Consensus       202 ~~pv  205 (369)
T 2hz6_A          202 ASPV  205 (369)
T ss_dssp             SSCE
T ss_pred             CCce
Confidence            4433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.79  E-value=3.1e-06  Score=62.36  Aligned_cols=161  Identities=12%  Similarity=0.114  Sum_probs=103.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEe-c---------CCcEEEEEcCCCCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAA-G---------NPHIRLFDVNSSSPQP   70 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~-~---------d~~i~i~d~~~~~~~~   70 (174)
                      +.++++ . +..|.+||.++++.......    ....++.+.++|++.++++. .         .....+|.+.....  
T Consensus        65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--  140 (297)
T 3g4e_A           65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--  140 (297)
T ss_dssp             SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--
T ss_pred             CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--
Confidence            444443 3 55789999887765332221    12347889999999877654 2         13356776654321  


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCC--CCeeE-----Eeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLR--APVCQ-----MEYE-SRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      .............++|+++++.+ ++.+.++.|..||+.  .....     ..+. ....+..+++.++++..++...++
T Consensus       141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence            22222333456789999999865 666778899999873  33221     1121 234678999999998777777778


Q ss_pred             cEEEEeCCCCcceeecCcc-cceeEEEEE
Q 042260          142 NIRVWDLTANSCSCELGLQ-YGLRTFLFY  169 (174)
Q Consensus       142 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~  169 (174)
                      .|..||..+++....+..+ ..+....|.
T Consensus       221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            8999999988888777666 344444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.78  E-value=1.5e-06  Score=64.09  Aligned_cols=143  Identities=10%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNV   81 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v   81 (174)
                      .+.++++...++.|..||..+++. ..+. ....+..+++++++.++++. +..+.+||..+++...+.....  ....+
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  100 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRF  100 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCC
Confidence            466788888899999999987765 3333 34568999999999877665 5679999987764333222111  12347


Q ss_pred             EEEEEeeCCCEEEEecCC---------CcEEEEeCCC-CeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260           82 MAVGFQCDGNWMYSGSED---------GTVKIWDLRA-PVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT  149 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~  149 (174)
                      ..+++.++|++.++...+         ..-.+|.+.. .............+.++|+|+++.|+ +.+.++.|..||+.
T Consensus       101 ~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          101 NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence            788999999977765321         2234444432 22222223334568999999998764 55567889999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.76  E-value=8.7e-06  Score=59.05  Aligned_cols=143  Identities=8%  Similarity=0.008  Sum_probs=98.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+.++...++.|..||.. ++. ..+.  .....+..+.+.+++.++++. .++.+..||. +++.. ..........
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~  142 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSY  142 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC
T ss_pred             CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCC
Confidence            45566776768889999876 332 2332  234468899999988877665 4677888987 43222 1122233456


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-ec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-YE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +..+++.++++..++...++.|..||. ....... .. ....+..+++.++++..++...++.|..||. ++.
T Consensus       143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            889999999998888888889999999 4443321 22 2346889999999887776666788999999 544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.76  E-value=1e-06  Score=64.75  Aligned_cols=135  Identities=9%  Similarity=0.148  Sum_probs=88.7

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEc----CCCce-EEE-ecCCcEEEEEcC-CCCCC---CeEEeecCC-CCEEE
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEIT----PNKHY-LAA-AGNPHIRLFDVN-SSSPQ---PVMSYDQHT-NNVMA   83 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~~~-~~d~~i~i~d~~-~~~~~---~~~~~~~~~-~~v~~   83 (174)
                      +.|..||.. ++...... .......++++    +++.. +++ ..++.|.+||.. .+...   ....+..+. .....
T Consensus       153 ~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          153 GSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence            456777665 54433222 22346788899    88754 344 356789999975 22211   111222232 55778


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN  151 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~  151 (174)
                      ++++++|++.++...++.|..||.++......+.. ...+.+++++|+++.|. +...++.|..|++...
T Consensus       231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            89999999988888888999999985444333433 36789999999998554 4455678999998853

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.75  E-value=3e-07  Score=67.63  Aligned_cols=143  Identities=9%  Similarity=0.077  Sum_probs=95.5

Q ss_pred             CcEEEEE-------eeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCC
Q 042260            4 PSVILAT-------ASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQP   70 (174)
Q Consensus         4 ~~~~l~s-------~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~   70 (174)
                      ++.++++       +..++.|..||..+++... +..     +...+..+.++++ +.++++.....+..||.. ++...
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~  105 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEE  105 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEE
Confidence            3556666       6778999999988776542 222     2346889999998 877776655578889987 43221


Q ss_pred             e-EEe--ecCCCCEEEEEEeeCCCEEEEecCC---------------CcEEEEeCCCCeeEEeecccCcEEEEEEc----
Q 042260           71 V-MSY--DQHTNNVMAVGFQCDGNWMYSGSED---------------GTVKIWDLRAPVCQMEYESRAAVNTVVLH----  128 (174)
Q Consensus        71 ~-~~~--~~~~~~v~~~~~~~~~~~l~t~~~d---------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~----  128 (174)
                      . ...  ......+..+++.++|+..++...+               +.|..||.. .............+.++++    
T Consensus       106 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTT
T ss_pred             EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccC
Confidence            1 110  0112347789999999988877655               567777765 3333323333456889999    


Q ss_pred             cCCCEEEE-eeCCCcEEEEeCC
Q 042260          129 PNQTELIS-GDQNGNIRVWDLT  149 (174)
Q Consensus       129 ~~~~~l~s-~~~d~~i~iwd~~  149 (174)
                      |+++.+.. ...++.|.+||+.
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEECC
Confidence            98876554 4567899999986

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.75  E-value=1.6e-06  Score=64.87  Aligned_cols=140  Identities=11%  Similarity=0.031  Sum_probs=94.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~   82 (174)
                      +.++++...++.|..||.++++.. .+.. ...+.++.+++++.++++. ...+.+||..+++...+.....  ....+.
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~  137 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSN  137 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence            567788888899999998877543 3332 3568899999999888776 4458999987764332211111  123578


Q ss_pred             EEEEeeCCCEEEEecC------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260           83 AVGFQCDGNWMYSGSE------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT  149 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~  149 (174)
                      .+.++++|++.++...      .+.|..+|  ..............+.++|+|+++.+. +.+.++.|.+||+.
T Consensus       138 ~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          138 DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            8999999997776542      24555555  343332222234568999999998765 44557889999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.73  E-value=1.4e-05  Score=57.98  Aligned_cols=141  Identities=11%  Similarity=0.091  Sum_probs=98.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+.++...++.|.+||.. ++... +..  ....+..+.+.+++.++++.. ++.+..+|.. ++.. ..........
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~  105 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSG  105 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC
T ss_pred             CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCC
Confidence            45567777678899999987 55432 322  235688999999888776654 5678888876 4321 1222223467


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      +..+++.++++..++...++.|..+|.. .... .... ....+..+++.++++..++...++.|..+|..
T Consensus       106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  175 (300)
T 2qc5_A          106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT  175 (300)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             CccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            8899999999998888878899999987 3333 2222 23568999999999966666667889999983

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.72  E-value=3.2e-06  Score=68.18  Aligned_cols=145  Identities=11%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEc----CCCceEEEe--cCCcEEEEEcCCCCCCCeEEe
Q 042260            3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEIT----PNKHYLAAA--GNPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~   74 (174)
                      .+++++.+++.|+.|.+||+.  +++.+..+.... ....++++    |++++++.+  .++.+.++|..+.+.......
T Consensus       206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~  284 (567)
T 1qks_A          206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  284 (567)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence            356778888999999999995  788888777543 46789999    688766544  467899999765432111100


Q ss_pred             ec--------------------C---------------------------------CCCEEEEEEeeCCCEEEEe-cCCC
Q 042260           75 DQ--------------------H---------------------------------TNNVMAVGFQCDGNWMYSG-SEDG  100 (174)
Q Consensus        75 ~~--------------------~---------------------------------~~~v~~~~~~~~~~~l~t~-~~dg  100 (174)
                      ..                    |                                 ........|++++++++.+ ..++
T Consensus       285 ~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn  364 (567)
T 1qks_A          285 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN  364 (567)
T ss_dssp             CEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             cccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC
Confidence            00                    0                                 0122355788999986554 4678


Q ss_pred             cEEEEeCCCCeeEEeecc-c------CcEEEEEEccCCCEE-EEee-CCCcEEEEeCCC
Q 042260          101 TVKIWDLRAPVCQMEYES-R------AAVNTVVLHPNQTEL-ISGD-QNGNIRVWDLTA  150 (174)
Q Consensus       101 ~v~iwd~~~~~~~~~~~~-~------~~v~~~~~~~~~~~l-~s~~-~d~~i~iwd~~~  150 (174)
                      .|.++|+.+.+....... .      ..++  .++|++..+ +++. .+++|.++|..+
T Consensus       365 ~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          365 KLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             eEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            999999998876655433 1      1222  267875554 4443 468999999987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.66  E-value=2.4e-06  Score=70.17  Aligned_cols=142  Identities=8%  Similarity=-0.056  Sum_probs=89.8

Q ss_pred             CCcEEEEEeeCCCc-------------EEEEECCCCce--eEEee--cCCCCeEEEEEcCCCceEEE-ecCC----cEEE
Q 042260            3 QPSVILATASYDKT-------------IKFWEAKSGRC--YRTIQ--YPDSQVNRLEITPNKHYLAA-AGNP----HIRL   60 (174)
Q Consensus         3 ~~~~~l~s~s~D~~-------------v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~-~~d~----~i~i   60 (174)
                      .+++.|+.++.|..             |++|++.+++.  ...+.  .+...+..+.|+|++..++. +.++    .+.+
T Consensus       177 pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          177 PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence            35667888888776             99999998763  22222  23346788999999886654 3333    4555


Q ss_pred             EEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec---CCCcEEEEeCCCCee---EEeecc--cCcEEEEEEccCCC
Q 042260           61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS---EDGTVKIWDLRAPVC---QMEYES--RAAVNTVVLHPNQT  132 (174)
Q Consensus        61 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~  132 (174)
                      ++..++..   ..+..+...+....+ ++|++++.+.   .++.|.+||+.++..   ...+.+  ...+..++++ ++.
T Consensus       257 ~~~~~~~~---~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~  331 (695)
T 2bkl_A          257 KRPGEKDF---RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH  331 (695)
T ss_dssp             ECTTCSSC---EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred             EcCCCCce---EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence            55443322   223334445555555 5666444444   357899999976542   222222  4457888887 667


Q ss_pred             EEEEeeCCCcEEEEeCC
Q 042260          133 ELISGDQNGNIRVWDLT  149 (174)
Q Consensus       133 ~l~s~~~d~~i~iwd~~  149 (174)
                      .+++...|+..+||.+.
T Consensus       332 lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          332 LSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEEe
Confidence            78888899988888665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.66  E-value=3.1e-05  Score=56.14  Aligned_cols=142  Identities=11%  Similarity=0.010  Sum_probs=96.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+.++...++.|..||.. ++.. .+..  ....+..+.+.+++.++++.. ++.+..+|.. ++.. ..........
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~  147 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSY  147 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC
T ss_pred             CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCC
Confidence            35566666667889999987 5542 3322  235688999998888776654 6678888875 3222 1222223456


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ...+++.++++..++...++.|..+|.......... .....+..+++.++++..++...++.|..||..
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            889999999998888877889999998433222211 123468899999998877766667789999983

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.66  E-value=1.8e-06  Score=66.31  Aligned_cols=142  Identities=11%  Similarity=0.090  Sum_probs=96.2

Q ss_pred             cEEEEEeeC----CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCC
Q 042260            5 SVILATASY----DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~----D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~   69 (174)
                      ..++++-..    +++|.+.|..+++.+..+.....+ . +.++|+++.+..+.           ++.+.+||..+.+..
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~  122 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT  122 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence            344555443    679999999999999988865554 4 99999988665432           457999999876432


Q ss_pred             CeEEeec-C----CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCc
Q 042260           70 PVMSYDQ-H----TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGN  142 (174)
Q Consensus        70 ~~~~~~~-~----~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  142 (174)
                      ....... .    ......++++++|++++.+..  ++.|.++|+.+.+.+.++.....  ...+....+.+++.+.||.
T Consensus       123 ~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          123 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSC
T ss_pred             EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCC
Confidence            2221111 0    123556889999998887653  68999999999988877754332  1222223345667777888


Q ss_pred             EEEEeCCC
Q 042260          143 IRVWDLTA  150 (174)
Q Consensus       143 i~iwd~~~  150 (174)
                      +...++.+
T Consensus       201 ~~~v~~~~  208 (386)
T 3sjl_D          201 LAKVAFGT  208 (386)
T ss_dssp             EEEEECCS
T ss_pred             EEEEECCC
Confidence            88888775

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.65  E-value=2.1e-06  Score=63.42  Aligned_cols=142  Identities=12%  Similarity=0.160  Sum_probs=95.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-eec-CCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-YDQ-HTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-~~~-~~~~v~   82 (174)
                      .+++++..++.|..|+. +++ ...+..+...+..+.+++++.++++. .++.|..|+.. ++...+.. ... ....+.
T Consensus        58 ~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             EEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred             EEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence            47888888999999987 444 34455555678999999999877765 34678888875 33221111 111 113456


Q ss_pred             EEEEeeCCCEEEE----ecC-------------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC-----
Q 042260           83 AVGFQCDGNWMYS----GSE-------------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN-----  140 (174)
Q Consensus        83 ~~~~~~~~~~l~t----~~~-------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----  140 (174)
                      .+++.++|+..+|    |..             .+.|..+|..+....... .....+.++|+|+++.|+.+...     
T Consensus       135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~  213 (305)
T 3dr2_A          135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHG  213 (305)
T ss_dssp             CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred             CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence            7889999998887    332             256777887554433322 33456889999999977766554     


Q ss_pred             -CcEEEEeCCCC
Q 042260          141 -GNIRVWDLTAN  151 (174)
Q Consensus       141 -~~i~iwd~~~~  151 (174)
                       +.|..||+...
T Consensus       214 ~~~i~~~~~~~~  225 (305)
T 3dr2_A          214 SVEITAFAWRDG  225 (305)
T ss_dssp             CCEEEEEEEETT
T ss_pred             CCEEEEEEecCC
Confidence             68999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.64  E-value=6.7e-06  Score=59.84  Aligned_cols=148  Identities=5%  Similarity=-0.065  Sum_probs=100.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+.+..+.+.++.|+++|+++++.+..+ .... ...++....+..++++..++.+.+||..+.+.  +..+... ..-.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~~ti~~~-~eGw  139 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--ERTTRYS-GEGW  139 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--EEEEECS-SCCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--EEEEeCC-Ccee
Confidence            3577889999999999999999998887 4432 23556666554444445678899999987643  3333322 2223


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .++  ++++.++.+..++.|.++|..+.+...++.-.      ..++.+.+. ++...+..-.+..|.+-|.++++....
T Consensus       140 GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          140 GLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             CEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             EEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence            333  46777777667889999999987776655431      245777776 565444443577899999999988755


Q ss_pred             cC
Q 042260          157 LG  158 (174)
Q Consensus       157 ~~  158 (174)
                      +.
T Consensus       217 Id  218 (268)
T 3nok_A          217 ID  218 (268)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.63  E-value=2.3e-05  Score=59.84  Aligned_cols=160  Identities=8%  Similarity=0.026  Sum_probs=99.3

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEee-----cCCCCe-EEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeec---
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQ-----YPDSQV-NRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ---   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---   76 (174)
                      .+++.+.|+++.++|. +++......     ....++ ....+.+. +.++..+..+.+.+.|...........+..   
T Consensus       179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~  257 (373)
T 2mad_H          179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence            3455667788888888 666553222     111111 12233333 333444455677788876543221111111   


Q ss_pred             -------CCCCEEEEEEeeCCCEEEEecC----------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEee
Q 042260           77 -------HTNNVMAVGFQCDGNWMYSGSE----------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD  138 (174)
Q Consensus        77 -------~~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~  138 (174)
                             .......++++++++.++....          ++.|.+.|+.+.+.+.++........++|+|+++ .++++.
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence                   0122334678888887666543          3579999999998888887777789999999999 677766


Q ss_pred             -CCCcEEEEeCCCCcceee-cCcccceeEEE
Q 042260          139 -QNGNIRVWDLTANSCSCE-LGLQYGLRTFL  167 (174)
Q Consensus       139 -~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~  167 (174)
                       .++.|.++|..+.+.... ......+..++
T Consensus       338 ~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~  368 (373)
T 2mad_H          338 AGTEVLHIYDAGAGDQDQSTVELGSGPQVLS  368 (373)
T ss_pred             CCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence             488999999999988877 44444444443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.60  E-value=5.5e-06  Score=64.09  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             cEEEEEeeCCC--cEEEEECCCCceeEEe----ecCCCCeEEEEEcC-CCceEEEecCCcEEEEEcCCCCCCCeEE--ee
Q 042260            5 SVILATASYDK--TIKFWEAKSGRCYRTI----QYPDSQVNRLEITP-NKHYLAAAGNPHIRLFDVNSSSPQPVMS--YD   75 (174)
Q Consensus         5 ~~~l~s~s~D~--~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~   75 (174)
                      +..|+.+..++  .|.+++..++.....+    ......+.+++++| ++.++++..++.|+.||..++.......  ..
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            34566666655  7888887766543333    21334577899999 5666665556779999987653211110  11


Q ss_pred             cCCCCE--EEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeeccc---------------CcEEEEEEccCCCEEEEe
Q 042260           76 QHTNNV--MAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---------------AAVNTVVLHPNQTELISG  137 (174)
Q Consensus        76 ~~~~~v--~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~s~  137 (174)
                      ......  ..+++++ ++.++++...++.|+.||...... ......               .....++++|+++..++-
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            111112  3899999 577777778889999999875422 111111               347899999999977777


Q ss_pred             e-CCCcEEEEeCCCCc
Q 042260          138 D-QNGNIRVWDLTANS  152 (174)
Q Consensus       138 ~-~d~~i~iwd~~~~~  152 (174)
                      . .++.|+.||+.++.
T Consensus       341 ~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TTTTCEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCE
Confidence            7 78899999977664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.57  E-value=7.2e-05  Score=55.79  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=93.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEecC-----CcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAGN-----PHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~   74 (174)
                      ++.++++. .+ .|.+||.++++........    ...+..+.+++++.++++..+     ....+|.+.+++   ...+
T Consensus       100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~---~~~~  174 (326)
T 2ghs_A          100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---VTKL  174 (326)
T ss_dssp             TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---EEEE
T ss_pred             CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---EEEe
Confidence            45555544 34 4999999887754322211    235788999999887765431     223444443332   1122


Q ss_pred             ecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCC--CC-e-----eEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           75 DQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLR--AP-V-----CQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~-~-----~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                      .........++|+++++.+ ++.+.++.|.+||+.  +. .     ....+. ....+..+++.++++..++...++.|.
T Consensus       175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            2233456788999999865 555667899999985  33 2     111221 234568899999998777666677899


Q ss_pred             EEeCCCCcceeecCccc
Q 042260          145 VWDLTANSCSCELGLQY  161 (174)
Q Consensus       145 iwd~~~~~~~~~~~~~~  161 (174)
                      .||. +++....+..+.
T Consensus       255 ~~d~-~g~~~~~i~~~~  270 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPG  270 (326)
T ss_dssp             EECT-TCCEEEEEECSC
T ss_pred             EECC-CCCEEEEEECCC
Confidence            9998 455555554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.55  E-value=3.5e-06  Score=69.43  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      +|.++.||+++.+....+....++..-.+...+..|+.|+.|+.++.||.++++.++++.++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence            378999999999887776655544444556678899999999999999999999998876553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.53  E-value=3e-05  Score=59.25  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=90.4

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEee--cC---CC
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYD--QH---TN   79 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~--~~---~~   79 (174)
                      +|.++|..+++.+..+.....+  .+.++|+++.+..+.           ++.+.++|..+.+........  ..   ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8999999999988877654433  899999998776652           466899998765322211111  00   12


Q ss_pred             CEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCcce
Q 042260           80 NVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ....+.++|+|++++.+..  ++.|.++| .+.+...+ +.....   +.+.|+++ .+++.+.||.+..+|. ++...
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence            3457899999999888764  57899999 98877766 544332   34556553 4556677888999988 65544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.52  E-value=4.9e-06  Score=64.37  Aligned_cols=144  Identities=8%  Similarity=0.069  Sum_probs=93.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCC--cEEEEEcCCCCCCCeEEe----ec
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNP--HIRLFDVNSSSPQPVMSY----DQ   76 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~--~i~i~d~~~~~~~~~~~~----~~   76 (174)
                      ++.++++...++.|+.||..+++........ .... ++|++++..++.+ .++  .+..++...+..  ....    ..
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~  216 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGST  216 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTT
T ss_pred             CCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--eEEeeeccch
Confidence            4667888888899999999887665444432 2234 8899988765554 333  677788754422  1122    11


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe----ecccC---cEEEEEEccC-CCEEEEeeCCCcEEEEeC
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME----YESRA---AVNTVVLHPN-QTELISGDQNGNIRVWDL  148 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~----~~~~~---~v~~~~~~~~-~~~l~s~~~d~~i~iwd~  148 (174)
                      ......++++++++..|+.+..++.|+.||.........    .....   +.+.++++|+ +..+++-..++.|+.||.
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            345677889998544555577788999999986653322    11111   1238999995 555566667888999997


Q ss_pred             CCC
Q 042260          149 TAN  151 (174)
Q Consensus       149 ~~~  151 (174)
                      ...
T Consensus       297 ~g~  299 (409)
T 3hrp_A          297 DGE  299 (409)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.52  E-value=1.3e-05  Score=58.27  Aligned_cols=149  Identities=9%  Similarity=0.060  Sum_probs=98.0

Q ss_pred             CcEEEEEeeCCC--cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+..+++.+|  +|+.+|+++|+.+..+...... -.++....+..++++..++.+.++|..+.+.  +..+....  
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~--~~ti~~~~--  127 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ--VRSFNYDG--  127 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE--EEEEECSS--
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE--EEEEECCC--
Confidence            356778888776  8999999999999888765432 2456555443334444577899999987643  33333221  


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---c---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---R---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                       ...+..++++.++.+..++.|.++|..+.+...++.-   .   ..++.+.+. ++...+..-.+..|.+.|.++++..
T Consensus       128 -eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          128 -EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             -CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred             -CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence             2223335666666665678899999998776655432   1   335667776 5654444435778999999999887


Q ss_pred             eecC
Q 042260          155 CELG  158 (174)
Q Consensus       155 ~~~~  158 (174)
                      ..+.
T Consensus       206 ~~Id  209 (262)
T 3nol_A          206 GIID  209 (262)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.50  E-value=4.4e-06  Score=64.18  Aligned_cols=128  Identities=9%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             CCCceEEEecCCcEEEEEcCCCCCCCeEEee---------c-CCCCEEEEEEeeCCCEEEEecC----------CCcEEE
Q 042260           45 PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---------Q-HTNNVMAVGFQCDGNWMYSGSE----------DGTVKI  104 (174)
Q Consensus        45 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---------~-~~~~v~~~~~~~~~~~l~t~~~----------dg~v~i  104 (174)
                      +++.++..+.++.+.+.|..+..........         + .......++++++++.++-...          .+.|-+
T Consensus       236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            4555555555677888887654322111111         0 0112224566777776655432          357999


Q ss_pred             EeCCCCeeEEeecccCcEEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260          105 WDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISG-DQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM  173 (174)
Q Consensus       105 wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (174)
                      .|+++.+.+.++....++..++++|+++ .|++. ..++.|.++|..+.+...++..+.+..++++- +||
T Consensus       316 iD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s-~d~  385 (386)
T 3sjl_D          316 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT-ADM  385 (386)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEE-CCC
T ss_pred             EECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEEC-CcC
Confidence            9999999988888777899999999986 66654 45889999999999999999999999988774 345

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.44  E-value=4.8e-05  Score=55.52  Aligned_cols=149  Identities=11%  Similarity=0.076  Sum_probs=97.9

Q ss_pred             cEEEEEeeC--CCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            5 SVILATASY--DKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~--D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +.+.++.+.  +++|++.|+.+++.+..+..... ....+.+..+ .+.++ -.++.+.++|..+.+.  +..+......
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-~lyv~t~~~~~v~viD~~t~~v--~~~i~~g~~~  108 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-KLYQVVWLKNIGFIYDRRTLSN--IKNFTHQMKD  108 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-EEEEEETTCSEEEEEETTTTEE--EEEEECCSSS
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-EEEEEEecCCEEEEEECCCCcE--EEEEECCCCC
Confidence            566666654  67899999999999988865432 3445666543 33333 3577899999987643  3333221111


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                        .....++|+.++.+..++.+.+.|..+.+....+.-.      ..++.+.+. ++...+..-.++.|.+-|..+++..
T Consensus       109 --g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          109 --GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             --CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred             --eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence              2334556776666667889999999987766555422      136788887 5644444445779999999999887


Q ss_pred             eecCc
Q 042260          155 CELGL  159 (174)
Q Consensus       155 ~~~~~  159 (174)
                      ..+.+
T Consensus       186 ~~I~~  190 (266)
T 2iwa_A          186 GWILL  190 (266)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.42  E-value=5.7e-05  Score=62.50  Aligned_cols=140  Identities=9%  Similarity=0.104  Sum_probs=84.2

Q ss_pred             EEEEECCCCce--eEEeecCC--CCeEEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260           17 IKFWEAKSGRC--YRTIQYPD--SQVNRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus        17 v~vwd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      |++|++.+++.  ...+....  ..+..+.|+|++..++. +.+     ..+.+||+.++.......+..+........ 
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-  323 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-  323 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-
Confidence            89999987763  22233222  34788999999976553 332     368999987651110222333333344433 


Q ss_pred             eeCCCEEEEecCC----CcEEEEeCCCC--eeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC-CCcceeecC
Q 042260           87 QCDGNWMYSGSED----GTVKIWDLRAP--VCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT-ANSCSCELG  158 (174)
Q Consensus        87 ~~~~~~l~t~~~d----g~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  158 (174)
                      .++|+.|+..+.+    +.|.+||+..+  .....+. ....+..+.+. ++..+++...|+..+||.+. ++....++.
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~  402 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS  402 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence            4788887776653    45999999874  3333333 33446677776 55677888889987777665 344444433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.41  E-value=4.4e-05  Score=57.72  Aligned_cols=146  Identities=6%  Similarity=0.056  Sum_probs=93.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC---------CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP---------DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .+..++.++.|..+|.++|+.+-.....         ...+.......++.+++++.++.+..+|..+++..  -.....
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~--W~~~~~  132 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA--WQTKVA  132 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEECS
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE--EEEeCC
Confidence            4667778899999999999987666542         12233322223556677777888999999877432  222221


Q ss_pred             CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE------EEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN------TVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .........  .+..++.++.++.+..+|.++.+....+....++.      ....  .+..++.++.++.+..+|.+++
T Consensus       133 ~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          133 GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTC
T ss_pred             CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCC
Confidence            111111111  24577778889999999998887766554433221      1122  2456778888999999999999


Q ss_pred             cceeecC
Q 042260          152 SCSCELG  158 (174)
Q Consensus       152 ~~~~~~~  158 (174)
                      +..++..
T Consensus       209 ~~~w~~~  215 (376)
T 3q7m_A          209 QMIWQQR  215 (376)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            8876654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.41  E-value=1.1e-05  Score=60.55  Aligned_cols=147  Identities=10%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             CcEEEEEeeC-----CCcEEEEECCCCceeEEeecC------CCCeEEEEEcCC-CceEEE-e---cCCcEEEEEcCCCC
Q 042260            4 PSVILATASY-----DKTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPN-KHYLAA-A---GNPHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~-----D~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~~~~-~---~d~~i~i~d~~~~~   67 (174)
                      ++.+.++-..     ++.|.+||+++++.+..+..+      ......+++++. +.++++ .   .++.|.+||+.+++
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            3555555433     578999999999877766543      134688999875 444343 3   46789999987553


Q ss_pred             CCCeEEeecC-----------------------------CCCEEEEEEeeCCCEEEEecCCC-cEEEEeCC---CCee--
Q 042260           68 PQPVMSYDQH-----------------------------TNNVMAVGFQCDGNWMYSGSEDG-TVKIWDLR---APVC--  112 (174)
Q Consensus        68 ~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~---~~~~--  112 (174)
                      ..  .....|                             ......++++++++.++.+..++ .+..++..   ....  
T Consensus       157 ~~--r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~  234 (343)
T 2qe8_A          157 AA--RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD  234 (343)
T ss_dssp             EE--EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred             EE--EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence            21  111110                             12357899999999888776665 44433321   1100  


Q ss_pred             ------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          113 ------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       113 ------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                            ............++++++++..++...++.|..||.++++
T Consensus       235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             HHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             hhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence                  0111122345678999999988888888999999994443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.41  E-value=7e-06  Score=67.50  Aligned_cols=140  Identities=9%  Similarity=0.093  Sum_probs=83.4

Q ss_pred             eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCC-------------cEEEEEcCCCCCCCeEEeec
Q 042260           11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNP-------------HIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-------------~i~i~d~~~~~~~~~~~~~~   76 (174)
                      |+.+.+|++||+++|+.+.... +......++|+ ++..| .+..+.             .|++|++.++.......+..
T Consensus       151 G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~  228 (693)
T 3iuj_A          151 GSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA  228 (693)
T ss_dssp             SCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred             CCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence            4444679999999998654321 11113457788 77644 444442             38889987664333333332


Q ss_pred             ---CCCCEEEEEEeeCCCEEEEec----CCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCEE-EEeeC---CCcE
Q 042260           77 ---HTNNVMAVGFQCDGNWMYSGS----EDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTEL-ISGDQ---NGNI  143 (174)
Q Consensus        77 ---~~~~v~~~~~~~~~~~l~t~~----~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~---d~~i  143 (174)
                         +......+.++++|++++...    .+..+.++|+..+  ............... +.+++..| +....   ++.|
T Consensus       229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l  307 (693)
T 3iuj_A          229 IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRL  307 (693)
T ss_dssp             SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred             CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEE
Confidence               334578889999999875432    2358999998765  222222222333333 45555544 44433   3679


Q ss_pred             EEEeCCCCcc
Q 042260          144 RVWDLTANSC  153 (174)
Q Consensus       144 ~iwd~~~~~~  153 (174)
                      ..+|+.++.+
T Consensus       308 ~~~d~~~~~~  317 (693)
T 3iuj_A          308 VTVDAANPGP  317 (693)
T ss_dssp             EEEETTSCCG
T ss_pred             EEEeCCCCCc
Confidence            9999987654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=7e-05  Score=53.84  Aligned_cols=148  Identities=10%  Similarity=0.078  Sum_probs=96.0

Q ss_pred             cEEEEEeeCCC--cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+..+.+.+|  +|+.+|+++|+.+..+...... -.++....+..+.++..++.+.++|..+.+.  +..+... ..-
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~--~~ti~~~-~~G  107 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP--RARFRYP-GEG  107 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE--EEEEECS-SCC
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE--EEEEeCC-CCc
Confidence            56777777764  8999999999999988765432 2455555433334444578899999987643  3333322 222


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ..++  .+++.++.+..++.|.++|..+.+...++.-.      ..++.+.+. ++...+..-.+..|.+.|.++++...
T Consensus       108 wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          108 WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence            3443  45565555556889999999987766555431      345667765 55544444356689999999998775


Q ss_pred             ecC
Q 042260          156 ELG  158 (174)
Q Consensus       156 ~~~  158 (174)
                      .+.
T Consensus       185 ~id  187 (243)
T 3mbr_X          185 WID  187 (243)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.36  E-value=2.6e-05  Score=60.95  Aligned_cols=144  Identities=15%  Similarity=0.206  Sum_probs=95.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCC----ceeEEee-------cCCCCeEEEEEcCCCceEEEecC------CcEEEEEcCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSG----RCYRTIQ-------YPDSQVNRLEITPNKHYLAAAGN------PHIRLFDVNSSS   67 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~   67 (174)
                      ..+++++..+.+|.++|+.+.    +.+..+.       .....-..+...|++.+++..++      +.+.+.|..+.+
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            467889999999999998755    4455552       11123456778899844444444      578899987764


Q ss_pred             CCCeEEeecC--C-CCEEEEEEeeCCCEEEEec-------------------CCCcEEEEeCCCCeeEEeeccc---CcE
Q 042260           68 PQPVMSYDQH--T-NNVMAVGFQCDGNWMYSGS-------------------EDGTVKIWDLRAPVCQMEYESR---AAV  122 (174)
Q Consensus        68 ~~~~~~~~~~--~-~~v~~~~~~~~~~~l~t~~-------------------~dg~v~iwd~~~~~~~~~~~~~---~~v  122 (174)
                      .  +..+...  . ..--.+.|+++++.+++..                   .+.+|.+||+.+.+...++...   ...
T Consensus       176 v--~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P  253 (462)
T 2ece_A          176 P--LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMA  253 (462)
T ss_dssp             E--EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred             E--EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcc
Confidence            3  3333211  1 1122467799999988885                   3689999999988776666553   344


Q ss_pred             EEEEE--ccCCCEEEEeeC------CCcEEEEeCCC
Q 042260          123 NTVVL--HPNQTELISGDQ------NGNIRVWDLTA  150 (174)
Q Consensus       123 ~~~~~--~~~~~~l~s~~~------d~~i~iwd~~~  150 (174)
                      ..+.|  +|+++.+.++++      +++|.+|....
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence            55555  999998877664      55776655543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.34  E-value=1.9e-05  Score=61.64  Aligned_cols=142  Identities=10%  Similarity=0.053  Sum_probs=94.3

Q ss_pred             EEEEeeCC------CcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEEec--------------------CCc
Q 042260            7 ILATASYD------KTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAAAG--------------------NPH   57 (174)
Q Consensus         7 ~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~--------------------d~~   57 (174)
                      +++++..+      +.+.+.|.++++.+..+....   ..-..+.|+|++..++++.                    ++.
T Consensus       150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            66776666      789999999999998886432   2234688899888777663                    678


Q ss_pred             EEEEEcCCCCCCCeEEeecC--CCCEEEEEE--eeCCCEEEEec------CCCcEEEEeCCCCeeE--Ee--ecc-----
Q 042260           58 IRLFDVNSSSPQPVMSYDQH--TNNVMAVGF--QCDGNWMYSGS------EDGTVKIWDLRAPVCQ--ME--YES-----  118 (174)
Q Consensus        58 i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~l~t~~------~dg~v~iwd~~~~~~~--~~--~~~-----  118 (174)
                      |.+||+.+.+  ....+...  ......+.|  +|++++.+.++      .+++|.+|........  ..  ...     
T Consensus       230 V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~  307 (462)
T 2ece_A          230 IHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG  307 (462)
T ss_dssp             EEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred             EEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence            9999998752  23333321  123445555  88999877666      4567766554332110  00  000     


Q ss_pred             ------------cCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCC
Q 042260          119 ------------RAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTA  150 (174)
Q Consensus       119 ------------~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~  150 (174)
                                  ...+..+.++|++++|.++.. .+.|.++|+..
T Consensus       308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                        234688999999999887654 67899999973

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.32  E-value=5.1e-05  Score=59.08  Aligned_cols=139  Identities=11%  Similarity=0.068  Sum_probs=91.4

Q ss_pred             cEEEEEeeCC----CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-----------cCCcEEEEEcCCCCCC
Q 042260            5 SVILATASYD----KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-----------GNPHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~d~~i~i~d~~~~~~~   69 (174)
                      ..+.++...+    ++|.+.|..+++.+..+.....+  .+.++|+++.+..+           .++.|.++|..+.+..
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            4455665544    79999999999999999876655  89999998865543           2457999999876432


Q ss_pred             CeEEeecC-----CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEeecccCcEEEEEEccCC-CEEEEeeCCC
Q 042260           70 PVMSYDQH-----TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ-TELISGDQNG  141 (174)
Q Consensus        70 ~~~~~~~~-----~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~  141 (174)
                      ........     ......+.++++|++++.+..  ++.|.+.|+.+.+.+.++.....   ....|.+ +.+++.+.||
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTS
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCC
Confidence            22222100     123456789999999888764  57899999999888776654332   1222322 3334444555


Q ss_pred             cEEEEeC
Q 042260          142 NIRVWDL  148 (174)
Q Consensus       142 ~i~iwd~  148 (174)
                      .+...+.
T Consensus       240 ~~~~V~~  246 (426)
T 3c75_H          240 SLARVDF  246 (426)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEEC
Confidence            5555555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.29  E-value=3.8e-05  Score=56.62  Aligned_cols=157  Identities=10%  Similarity=0.067  Sum_probs=91.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec-C---CCCeEEEEEcCCCceEEE----ec--------------CCcEEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-P---DSQVNRLEITPNKHYLAA----AG--------------NPHIRLF   61 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~~~----~~--------------d~~i~i~   61 (174)
                      ++.++++...++.|..|+.. ++...-... .   ...++.+.+++++.++++    +.              .+.|..+
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            45556555556789999875 543221111 1   124667999999988774    11              1345666


Q ss_pred             EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeE--Eee-c-ccCcEEEEEEccCC
Q 042260           62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQ--MEY-E-SRAAVNTVVLHPNQ  131 (174)
Q Consensus        62 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~--~~~-~-~~~~v~~~~~~~~~  131 (174)
                      |..+++...+   . .......++|+++++.++.+...      +.|..||+......  ..+ . ....+..+++.+++
T Consensus       175 d~~~g~~~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G  250 (305)
T 3dr2_A          175 PPDGSPLQRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG  250 (305)
T ss_dssp             CSSSCCCEEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred             cCCCCcEEEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC
Confidence            6555543322   1 33456789999999976666554      78999998654311  111 1 12334678899999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEE
Q 042260          132 TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF  168 (174)
Q Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  168 (174)
                      +. .+++.+ .|.+||.. +.....+..+..+....|
T Consensus       251 ~l-wv~~~~-gv~~~~~~-g~~~~~~~~~~~~~~~~f  284 (305)
T 3dr2_A          251 WL-WSSSGT-GVCVFDSD-GQLLGHIPTPGTASNCTF  284 (305)
T ss_dssp             CE-EECCSS-EEEEECTT-SCEEEEEECSSCCCEEEE
T ss_pred             CE-EEecCC-cEEEECCC-CCEEEEEECCCceeEEEE
Confidence            84 444444 49999984 444444444433433333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.28  E-value=2.4e-05  Score=64.37  Aligned_cols=146  Identities=14%  Similarity=0.151  Sum_probs=95.9

Q ss_pred             cEEEEECCCCceeEEeecCCC---------CeEEEEEcCCC---c-eEEEecCCcEEEEEcCCCCCCCeEEeec------
Q 042260           16 TIKFWEAKSGRCYRTIQYPDS---------QVNRLEITPNK---H-YLAAAGNPHIRLFDVNSSSPQPVMSYDQ------   76 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~------   76 (174)
                      +|..+|.++|+.+-.++....         ...-+....++   . ++.+..++.+.++|.++++..-...+..      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999998877654211         11112222244   3 3444567889999998875321111100      


Q ss_pred             --CCCC-E------------------------EEEEEeeCCCEEEEecC-------------------------------
Q 042260           77 --HTNN-V------------------------MAVGFQCDGNWMYSGSE-------------------------------   98 (174)
Q Consensus        77 --~~~~-v------------------------~~~~~~~~~~~l~t~~~-------------------------------   98 (174)
                        ..+. +                        ..++++++...++....                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence              0000 0                        14577887777766432                               


Q ss_pred             ------------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           99 ------------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        99 ------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                                  .|.|..||+.+.+....+....++....+...+..++.++.|+.++.||.++++.+.++.++.
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence                        278999999999888777665555555566678888889999999999999999998876554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.23  E-value=0.00013  Score=53.16  Aligned_cols=144  Identities=5%  Similarity=-0.030  Sum_probs=97.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeec---CCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQ---HTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~   80 (174)
                      +.+.++.-.++.+.++|..+.+.+..+......-..+.  +++. ++++-+++.+.+.|..+.+.........   ....
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~  153 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR  153 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence            45666777889999999999999988875411223344  3444 4444466789999987754322222211   1124


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEE-EeeCCCcEEE
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELI-SGDQNGNIRV  145 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~-s~~~d~~i~i  145 (174)
                      ...+.+. +++..+....++.|.+-|..+.++...+...              ...+.++++|+++.++ ++.....+..
T Consensus       154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            6677777 6766666667889999999999887776542              2569999999987655 5556778888


Q ss_pred             EeCCCC
Q 042260          146 WDLTAN  151 (174)
Q Consensus       146 wd~~~~  151 (174)
                      -++...
T Consensus       233 i~l~~~  238 (266)
T 2iwa_A          233 IKLHLV  238 (266)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            887754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.19  E-value=0.00029  Score=54.83  Aligned_cols=88  Identities=10%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             EEEeeCCCEEEEec----------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEee-CCCcEEEEeCCCC
Q 042260           84 VGFQCDGNWMYSGS----------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD-QNGNIRVWDLTAN  151 (174)
Q Consensus        84 ~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~  151 (174)
                      ++++++++.++...          .++.|.+.|+.+.+.+.++........++|+|+++ .+++.. .++.|.++|..+.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            57788877655543          13579999999999888887767789999999998 888777 4899999999999


Q ss_pred             cceeec-CcccceeEEEEEeecC
Q 042260          152 SCSCEL-GLQYGLRTFLFYHQDM  173 (174)
Q Consensus       152 ~~~~~~-~~~~~~~~~~~~~~~~  173 (174)
                      +...++ +......  +...+||
T Consensus       404 kvv~tI~~vG~~P~--~i~~~~~  424 (426)
T 3c75_H          404 EELRSVDQLGRGPQ--IITTHDM  424 (426)
T ss_dssp             CEEEEECCCSSSCC--EEECCCC
T ss_pred             CEEEEecCCCCCCc--EEEcCCC
Confidence            988776 4443333  3333455

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.00027  Score=53.00  Aligned_cols=147  Identities=15%  Similarity=0.222  Sum_probs=99.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCC--------CCeEEEEE---cCCCceEEEec--------------CCcE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD--------SQVNRLEI---TPNKHYLAAAG--------------NPHI   58 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~~~~~~--------------d~~i   58 (174)
                      .+.++++.-..++|..||...+..... ....        ..+.++.+   .|.+.+++...              +..+
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v  102 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF  102 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred             CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence            466777888999999999876543332 2211        13578999   67877766432              4568


Q ss_pred             EEEEcC---CCCCCCeEEeecC-----------CCCEEEEEEeeCCCEEEEecCC-CcEEEEeCCCCeeEEee-cc----
Q 042260           59 RLFDVN---SSSPQPVMSYDQH-----------TNNVMAVGFQCDGNWMYSGSED-GTVKIWDLRAPVCQMEY-ES----  118 (174)
Q Consensus        59 ~i~d~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~-~~----  118 (174)
                      ..+|+.   +++......+...           ......++..++|+..++++.. +.|...|.........+ ..    
T Consensus       103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~  182 (334)
T 2p9w_A          103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGG  182 (334)
T ss_dssp             EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSS
T ss_pred             EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcc
Confidence            889998   5644333333211           1247788899999999998888 77777776544222111 11    


Q ss_pred             -cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       119 -~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                       ....+.|+++|++..|++...++.+.-+|++..
T Consensus       183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence             123679999999998887766999999999854

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.17  E-value=0.00013  Score=55.07  Aligned_cols=145  Identities=16%  Similarity=0.215  Sum_probs=92.9

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCC----eEE---EEEcC---CCceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ----VNR---LEITP---NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~----v~~---~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      .++.+..++.+..+|.++|+.+.........    +..   +...|   ++.+++++.++.+..+|..+++.  ..  ..
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--~w--~~  265 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--MW--KR  265 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--EE--EE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--Ee--ec
Confidence            4667888999999999999887666532110    000   00111   35556666678899999987742  22  22


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-c-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-S-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      ..........  .+..++.++.++.+..+|.++.+...... . ...+.....  .+..|+.++.+|.+..+|.++++..
T Consensus       266 ~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          266 ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            2233333333  46677888889999999999887665544 1 112222222  3467888889999999999999887


Q ss_pred             eecCc
Q 042260          155 CELGL  159 (174)
Q Consensus       155 ~~~~~  159 (174)
                      .+.+.
T Consensus       342 ~~~~~  346 (376)
T 3q7m_A          342 AQQKV  346 (376)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            76554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.09  E-value=0.00016  Score=53.16  Aligned_cols=140  Identities=9%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+..++.++.+..+|.+ ++.......+...+..+...+++.+++++.++.+..+|.. ++  ....+......+.++..
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASI  184 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEE
Confidence            35567778899999988 7776666555445566667777887777777889999986 42  22233333444555666


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      .+++...+.+   +.+..+| .+......+.. ...+.++...+++. |..++.++.+..+|. ++....+
T Consensus       185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~  249 (330)
T 3hxj_A          185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR  249 (330)
T ss_dssp             CTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE
T ss_pred             cCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE
Confidence            6677755544   7899999 55554444433 34567777777665 555667777888874 3443333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.08  E-value=0.00047  Score=56.66  Aligned_cols=132  Identities=11%  Similarity=0.168  Sum_probs=78.6

Q ss_pred             cEEEEECCCCce--eEEeec---CCCCeEEEEEcCCCceEEEe-c----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260           16 TIKFWEAKSGRC--YRTIQY---PDSQVNRLEITPNKHYLAAA-G----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus        16 ~v~vwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      .|++|++.+++.  ...+..   +......+.++|++..++.. .    ...+.++|+.++... ...+..+....... 
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTVQGDLDADVSL-  286 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-
Confidence            499999887653  222222   23346788999999866432 1    247899998765322 22333444444444 


Q ss_pred             EeeCCCEEE-EecCC---CcEEEEeCCCCee---EEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCC
Q 042260           86 FQCDGNWMY-SGSED---GTVKIWDLRAPVC---QMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTAN  151 (174)
Q Consensus        86 ~~~~~~~l~-t~~~d---g~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~  151 (174)
                      ++++++.|+ .+..+   +.|..+|+..+..   .....+...+.  .++++++.|+.... ++  .|++||+..+
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            555555444 44333   6799999987543   22223333333  78888887766544 44  6899998744

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.07  E-value=8.1e-05  Score=55.87  Aligned_cols=138  Identities=7%  Similarity=0.055  Sum_probs=85.5

Q ss_pred             cEEEEEee---CCCcEEEEECCCCceeEEeecC-----------------------------CCCeEEEEEcCCCceEEE
Q 042260            5 SVILATAS---YDKTIKFWEAKSGRCYRTIQYP-----------------------------DSQVNRLEITPNKHYLAA   52 (174)
Q Consensus         5 ~~~l~s~s---~D~~v~vwd~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~~~~   52 (174)
                      +.+.++-+   .++.|.+||+.+++..+.+..+                             ...+..++++|++..+..
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~  211 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYL  211 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEE
T ss_pred             CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEE
Confidence            45666765   7889999999887765543221                             013578999999875554


Q ss_pred             e-cCCcEEEEEcCC-----CCCC-----CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--c
Q 042260           53 A-GNPHIRLFDVNS-----SSPQ-----PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--R  119 (174)
Q Consensus        53 ~-~d~~i~i~d~~~-----~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~  119 (174)
                      + ..+. ++|.+..     +...     ......++......++++++|+.+++...++.|.+||............  -
T Consensus       212 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          212 SPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             EESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred             EeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence            4 3332 4454421     1100     0001112334556788999999999999999999999944443222222  3


Q ss_pred             CcEEEEEEccCCCEEEEeeCCCcE
Q 042260          120 AAVNTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus       120 ~~v~~~~~~~~~~~l~s~~~d~~i  143 (174)
                      ..+.++++.+++..+++.+..+.+
T Consensus       291 ~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECCGGGS
T ss_pred             ecCCeeEECCCCcEEEEeCccccc
Confidence            457899999988877776554433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.06  E-value=0.00039  Score=50.46  Aligned_cols=132  Identities=14%  Similarity=0.197  Sum_probs=87.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v   81 (174)
                      ..+.+..-.++.+.+||.++.+.+.++.... .-..++.. .+.++.+.+++.+.++|..+.+..........   ...+
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            3455566678999999999999999998643 22344432 23444444566788888876543222222111   1334


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-------------CcEEEEEEccCCCEEEEeeC
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------------AAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~s~~~  139 (174)
                      ..+.+. +|+..+..-.+..|.+.|.++.++...+...             ...+.||++|++..|+..+.
T Consensus       175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            456665 6776666667889999999999887666431             24699999998887766553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.03  E-value=0.00056  Score=50.65  Aligned_cols=145  Identities=10%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecC--------------------CCCeEEEEEcC-CCceEEEecCCcEEEEEc
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYP--------------------DSQVNRLEITP-NKHYLAAAGNPHIRLFDV   63 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~   63 (174)
                      +.++.++..++.|..||..+++.. .+...                    .....++++.+ ++.++++.....+..+|.
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~  108 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS  108 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence            445677788889999987765432 22210                    12467899997 777776655555777886


Q ss_pred             CCCCCCCeEEe-e-cCCCCEEEEEEee-CCCEEEEecC-----------------CCcEEEEeCCCCeeEEeecccCcEE
Q 042260           64 NSSSPQPVMSY-D-QHTNNVMAVGFQC-DGNWMYSGSE-----------------DGTVKIWDLRAPVCQMEYESRAAVN  123 (174)
Q Consensus        64 ~~~~~~~~~~~-~-~~~~~v~~~~~~~-~~~~l~t~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~v~  123 (174)
                      .++....+... . ........+++.+ +|+..++...                 ++.|..+|............-...+
T Consensus       109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  188 (322)
T 2fp8_A          109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPG  188 (322)
T ss_dssp             TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCC
T ss_pred             CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCc
Confidence            54432222111 1 1123467888998 8987777543                 3678888887655433222223457


Q ss_pred             EEEEccCCCEEEEe-eCCCcEEEEeCCC
Q 042260          124 TVVLHPNQTELISG-DQNGNIRVWDLTA  150 (174)
Q Consensus       124 ~~~~~~~~~~l~s~-~~d~~i~iwd~~~  150 (174)
                      .++++|+++.|..+ +.++.|..+|+..
T Consensus       189 gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          189 GAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            89999999866544 5667899999875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.03  E-value=0.00053  Score=49.90  Aligned_cols=130  Identities=10%  Similarity=0.078  Sum_probs=86.3

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v~   82 (174)
                      .+.+..-.++.+.+||.++.+.+.++..... -+.++.. .+.++.+.+++.+.++|..+.+.........+   ...+.
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence            4555666789999999999999999986432 3455543 23444454577888888877643322222222   12455


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEEEee
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~  138 (174)
                      .+.|. +|+..+..-.+..|.+-|.++.++...+...              ...+.||++|++..|+..+
T Consensus       185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            66766 6766666656889999999999887665432              3569999999766655443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.03  E-value=0.00028  Score=57.97  Aligned_cols=64  Identities=13%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+|.|.-||+.+.+.........+.....+...+..|+.++.|+.++.||.++++...++.++.
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence            3488999999999887666554444433444577889999999999999999999998876544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.02  E-value=0.00015  Score=53.35  Aligned_cols=141  Identities=11%  Similarity=0.119  Sum_probs=88.5

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ   87 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~   87 (174)
                      +..++.++.|..+|.+ ++....+......+..+...+++.+.+++  +.+..+| .+++  ...........+.++...
T Consensus       150 l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~  223 (330)
T 3hxj_A          150 IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRPAIS  223 (330)
T ss_dssp             EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCCEEC
T ss_pred             EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc--EEEEEccCCcceeceEEC
Confidence            5567778999999988 87776666555556677777777776666  7788888 4442  223333333456666776


Q ss_pred             eCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           88 CDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        88 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++|+. ..++.++.+..+|... .....+... ..+..+.+.+++ .|..++.++.|..+|. +++......
T Consensus       224 ~~g~l-~v~t~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          224 EDGTI-YVTSLDGHLYAINPDG-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             TTSCE-EEEETTTEEEEECTTS-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             CCCeE-EEEcCCCeEEEECCCC-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence            66654 4455677788888543 333333322 223345555444 5667778888999996 555554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.99  E-value=7.3e-05  Score=57.12  Aligned_cols=137  Identities=12%  Similarity=-0.016  Sum_probs=90.7

Q ss_pred             CcEEEEEeeCCC----cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCC
Q 042260            4 PSVILATASYDK----TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSP   68 (174)
Q Consensus         4 ~~~~l~s~s~D~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~   68 (174)
                      +..+.++-..+.    +|.+.|..+++.+..+.....+  .+.++|+++.+..+.           ++.+.+||..+.+.
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            356677776666    8889999999999999876665  799999987665542           56799999988754


Q ss_pred             CCeEEeecC-------CCCEEEEEEeeCCCEEEEecC--CCcEEE--EeCCCCeeEEeecccCcEEEEEEccCCC-EEEE
Q 042260           69 QPVMSYDQH-------TNNVMAVGFQCDGNWMYSGSE--DGTVKI--WDLRAPVCQMEYESRAAVNTVVLHPNQT-ELIS  136 (174)
Q Consensus        69 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~t~~~--dg~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  136 (174)
                        .......       ......++++|+|++++.+..  +..+.+  +|..+   ..++.....   ..+.|++. .+++
T Consensus       109 --v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~  180 (368)
T 1mda_H          109 --IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYL  180 (368)
T ss_dssp             --EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEEC
T ss_pred             --EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEE
Confidence              3333221       123557889999998887754  467888  99977   233322111   12234332 3445


Q ss_pred             eeCCCcEEEEeCCC
Q 042260          137 GDQNGNIRVWDLTA  150 (174)
Q Consensus       137 ~~~d~~i~iwd~~~  150 (174)
                      .+.|+.+...|+.+
T Consensus       181 ~~~dg~~~~vd~~~  194 (368)
T 1mda_H          181 GSCPASLAASDLAA  194 (368)
T ss_dssp             CCCTTSCEEEECCS
T ss_pred             EcCCCCEEEEECcc
Confidence            55677777777765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.99  E-value=0.00027  Score=58.13  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=95.9

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC-C----CCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP-D----SQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++.++.|+.|..+|.++|+.+-.+... +    ..+...-.-..+.++++..      ++.++.+|..+++.  +-.+.
T Consensus       130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--~W~~~  207 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER--KWRWF  207 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE--EEEec
Confidence            4667788999999999999998777654 2    1121100011345555443      57799999988743  21111


Q ss_pred             cCC--------------------------------CCEEEEEEeeCCCEEEEecCCC-------------------cEEE
Q 042260           76 QHT--------------------------------NNVMAVGFQCDGNWMYSGSEDG-------------------TVKI  104 (174)
Q Consensus        76 ~~~--------------------------------~~v~~~~~~~~~~~l~t~~~dg-------------------~v~i  104 (174)
                      ...                                .....+++++++..++.+..++                   .|..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            110                                0112467778888888777654                   4999


Q ss_pred             EeCCCCeeEEeeccc----------CcEEEEEEccCC---CEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          105 WDLRAPVCQMEYESR----------AAVNTVVLHPNQ---TELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       105 wd~~~~~~~~~~~~~----------~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +|.++.+....++..          ....-+....++   ..|+.++.+|.+.++|.++++.....+
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            999998877665421          112222233366   578889999999999999998876643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.97  E-value=0.00013  Score=55.79  Aligned_cols=84  Identities=5%  Similarity=0.014  Sum_probs=63.6

Q ss_pred             EEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCE-EEEee-CCCcEEEEeCCCCc
Q 042260           84 VGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTE-LISGD-QNGNIRVWDLTANS  152 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~-~d~~i~iwd~~~~~  152 (174)
                      ++++++++.++.+..         ++.+.++|+.+.+.+.++........++++|+++. +++.. .++.|.++|+.+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            578999887665422         23566999999888877776667899999999985 45555 48999999999999


Q ss_pred             ceeecCcccceeEEE
Q 042260          153 CSCELGLQYGLRTFL  167 (174)
Q Consensus       153 ~~~~~~~~~~~~~~~  167 (174)
                      ...++......-.+.
T Consensus       349 vv~~I~vg~~P~~i~  363 (368)
T 1mda_H          349 DQSSVELDKGPESLS  363 (368)
T ss_dssp             EEEECCCCSCCCEEE
T ss_pred             EEEEEECCCCCCEEE
Confidence            888876555554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.96  E-value=0.00051  Score=56.62  Aligned_cols=148  Identities=14%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC-C-CCeEEEEEcC---CCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP-D-SQVNRLEITP---NKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++.++.|+.|..+|.++|+.+-.+... + .....+...|   ++.++++..      ++.+..||.++++.  +-.+.
T Consensus       123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~  200 (689)
T 1yiq_A          123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE--AWRFY  200 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred             EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE--EEEec
Confidence            4677888999999999999988766542 1 1111111112   455555432      46789999988742  21111


Q ss_pred             c-------------------------------CCCCEEEEEEeeCCCEEEEecCCCc-------------------EEEE
Q 042260           76 Q-------------------------------HTNNVMAVGFQCDGNWMYSGSEDGT-------------------VKIW  105 (174)
Q Consensus        76 ~-------------------------------~~~~v~~~~~~~~~~~l~t~~~dg~-------------------v~iw  105 (174)
                      .                               ....-...+++++.+.++.+..++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            0                               0001124677888888888887763                   9999


Q ss_pred             eCCCCeeEEeeccc----------CcEEEEEEccCCC---EEEEeeCCCcEEEEeCCCCcceee
Q 042260          106 DLRAPVCQMEYESR----------AAVNTVVLHPNQT---ELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       106 d~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      |.++.+....+...          .++.-.....++.   .|+.++.+|.+..+|.++++.+..
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            99998877665421          1221112222454   688899999999999999987744

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.95  E-value=0.0022  Score=46.01  Aligned_cols=131  Identities=10%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v   81 (174)
                      .++....-.++.+.+||.++.+.+.++..... -+.++.. .+.++++-+++.|.++|..+.+.........+   ...+
T Consensus        75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l  152 (243)
T 3mbr_X           75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL  152 (243)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence            45566677789999999999999999986543 3455543 23455555677788888877643322222211   1344


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEEEee
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~  138 (174)
                      ..+.+. +|+..+..-.+..|.+-|.++.++...+...              ...+.|+++|++..|+..+
T Consensus       153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            556654 6666666656779999999998887665421              3569999999877766554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.78  E-value=0.0035  Score=50.59  Aligned_cols=142  Identities=15%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEE-c-CCCceEEEec-------------------CCcEEEEEcC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEI-T-PNKHYLAAAG-------------------NPHIRLFDVN   64 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~~~-------------------d~~i~i~d~~   64 (174)
                      ++++...+..|.+-|+.+.++...+..+ ......+++ + |++.++..+.                   ++.+.+.|..
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            4566666778999999999988755543 244778887 4 7777665542                   2356777877


Q ss_pred             CCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--------------------------------------cEEEEe
Q 042260           65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--------------------------------------TVKIWD  106 (174)
Q Consensus        65 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--------------------------------------~v~iwd  106 (174)
                      +.+.  .....-- ..-..++.+++|+++++.+.+.                                      .|.+.|
T Consensus       184 t~~v--~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID  260 (595)
T 1fwx_A          184 KWEV--AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  260 (595)
T ss_dssp             TTEE--EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             CCeE--EEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence            6432  2222211 2345566788899888877543                                      467777


Q ss_pred             CCC--Cee-EEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCC
Q 042260          107 LRA--PVC-QMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTAN  151 (174)
Q Consensus       107 ~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~  151 (174)
                      .++  ... ...+........+.++|+++++++++ .+.+|.++|+.+.
T Consensus       261 ~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          261 GRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             CSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             CcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            776  333 33444445567889999999876554 5789999999965

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.76  E-value=0.0021  Score=51.98  Aligned_cols=66  Identities=14%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260           98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus        98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      .+|.+.-||+.+.+.........++..-.+...+..|+.|+.|+.++.||.++++.+++++++...
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~  529 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI  529 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence            368899999999887765544333322222235678888999999999999999999887665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.69  E-value=0.0023  Score=51.60  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=47.1

Q ss_pred             CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+|.+..||+.+.+....+....++....+...+..|+.++.|+.++.+|.++++.+.++.+..
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence            3578999999988877666544433333333356778889999999999999999998876443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.67  E-value=0.00085  Score=54.12  Aligned_cols=137  Identities=11%  Similarity=0.097  Sum_probs=90.7

Q ss_pred             eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C-----------------------------------
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N-----------------------------------   55 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d-----------------------------------   55 (174)
                      -+++.+-+.|.++.+.+..+.... .-..++++|+++++..+. +                                   
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            345679999999888877776543 345677888877654432 1                                   


Q ss_pred             ---CcEEEEEcCCCCCCC-eEEeecCCCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCCCe------------eEEeecc
Q 042260           56 ---PHIRLFDVNSSSPQP-VMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPV------------CQMEYES  118 (174)
Q Consensus        56 ---~~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~------------~~~~~~~  118 (174)
                         +.+.+.|.++.+... ...... .....++.++|+|++++ ++..+..|.++|+.+..            ...+...
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             eEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence               135566665411111 111211 24566788999999655 45568899999998642            3444555


Q ss_pred             cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ......++|+|++....+.--|++|..||+.+
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            67789999999994334555689999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.62  E-value=0.0086  Score=42.88  Aligned_cols=150  Identities=10%  Similarity=0.015  Sum_probs=89.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEec---CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +.+.++-...+.|.+++...................++++|+ +.++++..   .+.|..+++......  .........
T Consensus        91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~--~~~~~~~~~  168 (267)
T 1npe_A           91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILAQDNLGL  168 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE--EEECTTCSC
T ss_pred             CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE--EEEECCCCC
Confidence            455666666778888887643222112222245688999995 54444432   356777777543211  111223356


Q ss_pred             EEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCCcceeecC
Q 042260           81 VMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        81 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ...++++++++ ..++-...+.|..+|..................+++.  +..|. +...++.|..+|..+++....+.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            78899998765 4566667789999999754333222222334566653  44454 44456789999999888776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.62  E-value=0.0034  Score=51.52  Aligned_cols=147  Identities=13%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCC----CeEE-EEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDS----QVNR-LEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      .++.++.|+.|..+|.++|+.+-.+.....    .+.. -.+. .+.++++..      ++.+..+|.++++.  +-.+.
T Consensus       119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~  195 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKL--AWRFY  195 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcE--EEEec
Confidence            466778899999999999998877664211    1111 0111 344554432      36788889887742  21111


Q ss_pred             c---C----------------------------CCCEEEEEEeeCCCEEEEecCCC-------------------cEEEE
Q 042260           76 Q---H----------------------------TNNVMAVGFQCDGNWMYSGSEDG-------------------TVKIW  105 (174)
Q Consensus        76 ~---~----------------------------~~~v~~~~~~~~~~~l~t~~~dg-------------------~v~iw  105 (174)
                      .   .                            .......++.+....++.+..++                   .|.-+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1   0                            00112356777778888887765                   39999


Q ss_pred             eCCCCeeEEeeccc----------CcEEEEEEccCCC---EEEEeeCCCcEEEEeCCCCcceee
Q 042260          106 DLRAPVCQMEYESR----------AAVNTVVLHPNQT---ELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       106 d~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      |.++.+....+...          .++.-..+..+++   .|+.++.+|.+..+|.++++....
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence            99998877666431          2222222223554   588899999999999999987743

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.016  Score=44.91  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEec-CC---cEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260           10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG-NP---HIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      .+...+.|+.+|++++... .+.........+++++++. ++++.. ++   ...+|....+.......+. .......+
T Consensus       154 v~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~gi  231 (430)
T 3tc9_A          154 LVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGA  231 (430)
T ss_dssp             EEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCE
T ss_pred             EEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEE
Confidence            3333377888888765533 3333444578899999887 444432 11   1222222333332222222 12345677


Q ss_pred             EEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCC
Q 042260           85 GFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTA  150 (174)
Q Consensus        85 ~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~  150 (174)
                      ++.+ ++.++++-..++.|..+|..........  ........++++|+++.| ++-..+..|..++...
T Consensus       232 avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          232 ETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            8888 7888888878889999999876542222  222346899999999955 4555677899887663

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.55  E-value=0.0088  Score=48.55  Aligned_cols=64  Identities=14%  Similarity=0.125  Sum_probs=46.4

Q ss_pred             CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260           98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY  161 (174)
Q Consensus        98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  161 (174)
                      .+|.+.-||+.+.+.........+...-.+...+..|+.++.|+.++.+|.++++.+++.+++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~  514 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence            4578999999998877665433332221222356778889999999999999999998876554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.48  E-value=0.014  Score=41.79  Aligned_cols=145  Identities=7%  Similarity=0.016  Sum_probs=88.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-ceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-HYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.+.++-..++.|..++..++.....+...-.....+++++.+ .++++. ..+.|..+++......  ...........
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~~~~~~P~  125 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLFDTGLVNPR  125 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSSEE
T ss_pred             CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEEECCCCCcc
Confidence            4566666677888888877654332222222457889999864 444443 4567888888643221  11222225678


Q ss_pred             EEEEeeCCCE-EEEecC--CCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDGNW-MYSGSE--DGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~~~-l~t~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~  151 (174)
                      .+++++++.. +++...  .+.|..+++......... ..-...+.++++|++..|. +-...+.|..+|+...
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence            8999986554 444433  468888887643322111 2224578999999876665 4445678999998753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.44  E-value=0.0011  Score=54.13  Aligned_cols=150  Identities=12%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             CcEEEEEeeCCC-----------cEEEEECCCCcee--EEeecC-CCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCC
Q 042260            4 PSVILATASYDK-----------TIKFWEAKSGRCY--RTIQYP-DSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~D~-----------~v~vwd~~~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~   67 (174)
                      ++++++.||.+.           .+.+||..+++..  ...... .....+.++..++.+++.++  +..+.+||..+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            567888887654           5889998887642  222222 22334566677777776654  3469999987765


Q ss_pred             CCCeEEeecCCCCEEEEEEeeCCCEEEEec-CC-----CcEEEEeCCCCeeEEeec-----ccCcEEEEEEccCCCEEEE
Q 042260           68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGS-ED-----GTVKIWDLRAPVCQMEYE-----SRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        68 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-----g~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s  136 (174)
                      +.....+...+.. .+++..++++.++.|+ .+     ..+.+||..+......-.     ....-...++..++...+.
T Consensus       277 W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~  355 (656)
T 1k3i_A          277 WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  355 (656)
T ss_dssp             EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence            4433222222222 3344456889989888 44     569999998765433210     0000000122234444455


Q ss_pred             eeCC---------CcEEEEeCCCCcce
Q 042260          137 GDQN---------GNIRVWDLTANSCS  154 (174)
Q Consensus       137 ~~~d---------~~i~iwd~~~~~~~  154 (174)
                      |+.+         ..+..||.......
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~  382 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDV  382 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ECCCCcEEEecCccceeeeecCCccee
Confidence            5444         35678888876533

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.26  E-value=0.031  Score=41.14  Aligned_cols=132  Identities=10%  Similarity=0.023  Sum_probs=74.9

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCE
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNW   92 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   92 (174)
                      +.|..||..+++...... .-.....+++++++..+ ++ ...+.|..+++..........+..... ...+++.++|++
T Consensus       165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            456666655544322111 11235678999987644 33 345779999987532211222211223 677888899987


Q ss_pred             EEEecC----------CCcEEEEeCCCCeeEEeeccc-----CcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           93 MYSGSE----------DGTVKIWDLRAPVCQMEYESR-----AAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        93 l~t~~~----------dg~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      .++...          .+.|..+|.. ......+...     ..+..+++ .++...++...++.|..+++..
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            777644          4678888875 3333333321     23555555 4555556655677899998764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.24  E-value=0.0031  Score=50.80  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=44.6

Q ss_pred             CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE--EEEEccCCCE
Q 042260           56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN--TVVLHPNQTE  133 (174)
Q Consensus        56 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~  133 (174)
                      +.+..||+.+++.  .-.++.. ..+........+..++.++.|+.++.+|.++.+....+.....+.  .+.+..+++.
T Consensus       444 g~l~a~D~~tG~~--~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          444 GQIRAFDLTTGKA--KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCE--EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEECCCCCE--EEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            4677788776642  2222211 112222223346677779999999999999998887776443321  2234456665


Q ss_pred             EE
Q 042260          134 LI  135 (174)
Q Consensus       134 l~  135 (174)
                      ++
T Consensus       521 yv  522 (571)
T 2ad6_A          521 YI  522 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.19  E-value=0.007  Score=48.91  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEE--EEEccCCCE
Q 042260           56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT--VVLHPNQTE  133 (174)
Q Consensus        56 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~  133 (174)
                      +.+..||+.+++.  +-..... .....-...-.+..++.|+.|+.++.||.++.+.+..+.....+.+  +.+..+++.
T Consensus       466 G~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          466 GSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEECCCCCE--EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            4577788777642  1111111 1111111122466788899999999999999998877766544432  455567764


Q ss_pred             E
Q 042260          134 L  134 (174)
Q Consensus       134 l  134 (174)
                      .
T Consensus       543 Y  543 (582)
T 1flg_A          543 Y  543 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.19  E-value=0.046  Score=41.66  Aligned_cols=165  Identities=8%  Similarity=-0.008  Sum_probs=93.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN-PHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d-~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+.++-...+.|.+.++........+...-....+++++|.+..+..+  +. +.|..++.....  ............
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~P  248 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWP  248 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSCE
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCCCCe
Confidence            3444555555666666655433222222222456889999865544333  33 557777765432  222222234457


Q ss_pred             EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ..++++++ +++.++-+..+.|..+|+.......... .......+++ ..+..+.+...++.|..+|..++.....+..
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            88999964 5555666677889999986533222222 2234577777 4455556666678899999766665544432


Q ss_pred             c-cceeEEEEEeec
Q 042260          160 Q-YGLRTFLFYHQD  172 (174)
Q Consensus       160 ~-~~~~~~~~~~~~  172 (174)
                      + ..+....++|+.
T Consensus       328 ~~~~p~gi~v~~~~  341 (386)
T 3v65_B          328 KLHFPMDIHTLHPQ  341 (386)
T ss_dssp             SCSCCCCEEEESGG
T ss_pred             CCCCCceEEEEchh
Confidence            2 334556667754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.14  E-value=0.056  Score=42.01  Aligned_cols=141  Identities=11%  Similarity=0.167  Sum_probs=88.8

Q ss_pred             CcEEEEEeeCCCcEEEE--------ECCCCceeEEeecC----CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-
Q 042260            4 PSVILATASYDKTIKFW--------EAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP-   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vw--------d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-   70 (174)
                      .+++++++.++..+.++        ++..+..-+.++.+    -..+..+..+|+|.+++..++..+.+..+..+.... 
T Consensus        22 s~R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           22 SPRYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             CCEEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC
T ss_pred             CCcEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCc
Confidence            34555566655555554        33333223333333    125778999999999999999999999987432111 


Q ss_pred             ---------eEEeec------CCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCC--eeEEeecc----------cC
Q 042260           71 ---------VMSYDQ------HTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAP--VCQMEYES----------RA  120 (174)
Q Consensus        71 ---------~~~~~~------~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~----------~~  120 (174)
                               ...+.-      ....|..+.|+|   ++..|+.=..|+.||+||+...  ++. .+..          ..
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~  180 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN  180 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence                     112222      246799999998   4567888889999999999751  111 1211          14


Q ss_pred             cEEEEEEccCCCEEEEe--eCCCcEEE
Q 042260          121 AVNTVVLHPNQTELISG--DQNGNIRV  145 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~--~~d~~i~i  145 (174)
                      .|.+++|..++-.|...  +.+|.|.-
T Consensus       181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          181 DITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            67888998876666553  36676643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.13  E-value=0.083  Score=43.96  Aligned_cols=143  Identities=12%  Similarity=0.148  Sum_probs=91.3

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeec-------CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe------
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQY-------PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY------   74 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------   74 (174)
                      |-.|..++-|..|+..++... .+..       ....|.++...+++.+.++..++.+..|+..++........      
T Consensus       323 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  401 (795)
T 4a2l_A          323 MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESAR  401 (795)
T ss_dssp             EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------
T ss_pred             EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence            334555566788876654322 1211       23458899888888888888777899999866532211100      


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .-....|.++...++++.+..|+.++-+..+|.++........     ....|.++...++++..+. +. +.+.+||..
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~  479 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPE  479 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETT
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCC
Confidence            0123568888888888845666776779999988765433211     2356899998887775554 44 458899987


Q ss_pred             CCcc
Q 042260          150 ANSC  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      +++.
T Consensus       480 ~~~~  483 (795)
T 4a2l_A          480 QRSF  483 (795)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.11  E-value=0.082  Score=43.97  Aligned_cols=139  Identities=6%  Similarity=0.036  Sum_probs=88.7

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEee----cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe----ecCCC
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQ----YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY----DQHTN   79 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~   79 (174)
                      |-.|..++-|..||.++++...-..    .+...|.++...+++.+.++.. ..+.+||..++........    .....
T Consensus       420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCc
Confidence            4456666668999988776432211    1234688888888888877766 5688899866532211100    11235


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+.++...++|+..+.+.  +-+..||..+...  .+.        ....|.++...++++..++ +.+ .+..||..+.
T Consensus       499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDK  572 (795)
T ss_dssp             CEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCC
Confidence            688888888888666554  4588888776554  221        1346899998888886554 344 5888998776


Q ss_pred             cc
Q 042260          152 SC  153 (174)
Q Consensus       152 ~~  153 (174)
                      +.
T Consensus       573 ~~  574 (795)
T 4a2l_A          573 QI  574 (795)
T ss_dssp             EE
T ss_pred             cE
Confidence            53

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.10  E-value=0.0061  Score=50.65  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             cEEEEECCCC-ceeEE-eecCCCCeEEEEEcCCCceE-EEecC-----CcEEEEEcCCCCCCCeEEeec-CCCCEEEEEE
Q 042260           16 TIKFWEAKSG-RCYRT-IQYPDSQVNRLEITPNKHYL-AAAGN-----PHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVGF   86 (174)
Q Consensus        16 ~v~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~   86 (174)
                      +|+++|+.+| +.+.. +.   .....+.|+|++..| .+..+     ..|..+++.++.......+.. .......+.|
T Consensus       202 ~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  278 (751)
T 2xe4_A          202 TIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK  278 (751)
T ss_dssp             EEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred             EEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence            5999999988 63211 11   113457899988644 44433     246777776553222333332 2234667889


Q ss_pred             eeCCCEEEEecC---CCcEEEEeCCCC--ee--EEee-cccCcEEEEEEccCCCEEEEeeCC----CcEEEEeCCC
Q 042260           87 QCDGNWMYSGSE---DGTVKIWDLRAP--VC--QMEY-ESRAAVNTVVLHPNQTELISGDQN----GNIRVWDLTA  150 (174)
Q Consensus        87 ~~~~~~l~t~~~---dg~v~iwd~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~  150 (174)
                      +++|++|+..+.   ...|.++|+..+  ..  .... .......+..|+..+.+++....+    ..|..+|+.+
T Consensus       279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            999998776552   446888898764  22  1111 122344555544444444444333    3577777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.07  E-value=0.011  Score=49.02  Aligned_cols=111  Identities=13%  Similarity=0.105  Sum_probs=70.6

Q ss_pred             CeEEEEEc-CCCceEEEec----C--CcEEEEEcCCC-CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEE
Q 042260           37 QVNRLEIT-PNKHYLAAAG----N--PHIRLFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVK  103 (174)
Q Consensus        37 ~v~~~~~~-~~~~~~~~~~----d--~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~  103 (174)
                      .+....|+ |++..++-+.    +  ..|+++|+.++ +.... .+..   ....+.|+++++.|+-...|     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            46778999 9998766332    1  24999999876 52111 1111   13467899999877766654     2588


Q ss_pred             EEeCCCCee--EEee--cccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCC
Q 042260          104 IWDLRAPVC--QMEY--ESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTAN  151 (174)
Q Consensus       104 iwd~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~  151 (174)
                      ++++.+...  ...+  ........+.++|+++.|+..+.   ...|.++|+..+
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            888876531  1222  22234567899999998775442   345888999865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.07  E-value=0.059  Score=40.79  Aligned_cols=139  Identities=12%  Similarity=0.242  Sum_probs=91.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC----Cc---eEEEe--c--CCcEEEEEcCCCCCCCeEEee
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN----KH---YLAAA--G--NPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~~~~~--~--d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      ++++....+-+.+||+ +|+.++.+..  ..++.+..-|.    +.   +++++  .  ++.+++|++..... .+....
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~  117 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT  117 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence            4666677788999999 7888888753  45777666552    21   33333  3  56799998743211 122221


Q ss_pred             -------cCCCCEEEEEE--ee-CCC-EEEEecCCCcEEEEeCC-------CCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260           76 -------QHTNNVMAVGF--QC-DGN-WMYSGSEDGTVKIWDLR-------APVCQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        76 -------~~~~~v~~~~~--~~-~~~-~l~t~~~dg~v~iwd~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                             .....+-.+++  ++ .++ +++....+|.+..|++.       +.+.+.++.....+-.++..+....|+.+
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence                   11144556666  44 344 57777788999999983       33456677777889999999988899999


Q ss_pred             eCCCcEEEEeCC
Q 042260          138 DQNGNIRVWDLT  149 (174)
Q Consensus       138 ~~d~~i~iwd~~  149 (174)
                      -++..|-.+|.+
T Consensus       198 eEd~GIw~~da~  209 (355)
T 3amr_A          198 EEDEAIWKFSAE  209 (355)
T ss_dssp             ETTTEEEEEECS
T ss_pred             cccceEEEEeCC
Confidence            998666555544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.06  E-value=0.036  Score=44.99  Aligned_cols=147  Identities=13%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEeecCCC----CeEE-EEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeec
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTIQYPDS----QVNR-LEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQ   76 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~   76 (174)
                      ++.++.|+.|..+|.++|+.+-.......    .+.. -.+. ++.+++++.      ++.|+.+|.++++.  +-.+..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~--~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQ--VWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCE--EEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcE--EEEEcC
Confidence            66778899999999999998766653321    1211 0111 345555442      67899999887742  211111


Q ss_pred             CCCC-------------------------------------E-EEEEEeeCCCEEEEecCC----------------CcE
Q 042260           77 HTNN-------------------------------------V-MAVGFQCDGNWMYSGSED----------------GTV  102 (174)
Q Consensus        77 ~~~~-------------------------------------v-~~~~~~~~~~~l~t~~~d----------------g~v  102 (174)
                      ....                                     + ...++.+....++.+..+                +.|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            1000                                     0 123455566666666554                378


Q ss_pred             EEEeCCCCeeEEeeccc-----------CcEEEEEEc-cCC---CEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          103 KIWDLRAPVCQMEYESR-----------AAVNTVVLH-PNQ---TELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       103 ~iwd~~~~~~~~~~~~~-----------~~v~~~~~~-~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .-+|.++.+....++..           .++. +... .++   ..++.++.+|.+...|.++++...+.+
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            99999998877665432           1222 1221 356   456778899999999999998876653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.05  E-value=0.034  Score=45.40  Aligned_cols=115  Identities=9%  Similarity=0.079  Sum_probs=74.0

Q ss_pred             EEEEcC-CCceEEEec-CC-----------cEEEEEcCCCCCCCeEEeecCC-CCEEEEEEeeCCCEEEEecC-CCcEEE
Q 042260           40 RLEITP-NKHYLAAAG-NP-----------HIRLFDVNSSSPQPVMSYDQHT-NNVMAVGFQCDGNWMYSGSE-DGTVKI  104 (174)
Q Consensus        40 ~~~~~~-~~~~~~~~~-d~-----------~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~~-dg~v~i  104 (174)
                      ..++.+ ++++++.++ +.           .+.+||..++++..+..+...+ ....+.++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            445555 666655442 11           4788999888776665544333 23445667788999999884 568999


Q ss_pred             EeCCCCeeEEeecc--cCcEEEEEEccCCCEEEEee-CC-----CcEEEEeCCCCcce
Q 042260          105 WDLRAPVCQMEYES--RAAVNTVVLHPNQTELISGD-QN-----GNIRVWDLTANSCS  154 (174)
Q Consensus       105 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~  154 (174)
                      ||..+......-..  ...-.+++..++++.++.|+ .+     ..+.+||..+....
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            99887654332211  11123456667888888888 34     46999999887644

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.04  E-value=0.037  Score=40.24  Aligned_cols=145  Identities=10%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec--------CCcEEEEEcCCCCCCC
Q 042260            5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG--------NPHIRLFDVNSSSPQP   70 (174)
Q Consensus         5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~   70 (174)
                      +.+++.|+.++     .+.+||+.+++-...-..+.... ..++.. ++.+++.++        ...+.+||..+..+..
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            45677777654     47788887664322211111111 122222 344444332        2347889987765543


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCC-
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNG-  141 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~-  141 (174)
                      +..+...+.....+.  .+++.++.|+.+     ..+.+||+.+......-..   +.....+.+  ++..++.|+.++ 
T Consensus       188 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~  263 (302)
T 2xn4_A          188 IAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGS  263 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             CCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCC
Confidence            322222222222222  357777777654     3688999987654332211   111222222  567777777653 


Q ss_pred             ----cEEEEeCCCCcce
Q 042260          142 ----NIRVWDLTANSCS  154 (174)
Q Consensus       142 ----~i~iwd~~~~~~~  154 (174)
                          .+.+||+++.+..
T Consensus       264 ~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          264 CNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             SBCCCEEEEETTTTEEE
T ss_pred             cccccEEEEcCCCCeEE
Confidence                4899999987644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.03  E-value=0.039  Score=40.05  Aligned_cols=145  Identities=11%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~   72 (174)
                      +.+++.|+.++     .+.+||+.+++-...-..+.... ..+... ++.+++. +.+     ..+..||..+..+..+.
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            55677777543     58888887765332222221111 122222 4454443 322     45788998776554332


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC----
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN----  140 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d----  140 (174)
                      .+...+.....+.  .+++.++.|+.+     ..+.+||+.+......-..   ......+.+  ++..++.|+.+    
T Consensus       192 ~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~  267 (301)
T 2vpj_A          192 PMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSL  267 (301)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred             CCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcc
Confidence            2222222222222  356777777654     4689999987654432211   111222233  56677777765    


Q ss_pred             -CcEEEEeCCCCcce
Q 042260          141 -GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -~~i~iwd~~~~~~~  154 (174)
                       ..+..||+++.+..
T Consensus       268 ~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          268 LSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEEEEETTTTEEE
T ss_pred             cccEEEEcCCCCeEE
Confidence             35788999887644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.97  E-value=0.085  Score=40.94  Aligned_cols=141  Identities=12%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC----Cc-EEEEEcCCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN----PH-IRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d----~~-i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +.+.++-.. +.|+.+|..+++..... ........+++++++.++++...    .. +...+.. .......... ...
T Consensus       153 g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~  228 (433)
T 4hw6_A          153 DDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLC-NAR  228 (433)
T ss_dssp             CEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEE-ECS
T ss_pred             CEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccccc-ccC
Confidence            444444333 77888888766544332 23345789999999886555431    11 2222322 2221111111 234


Q ss_pred             CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEee--cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260           80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QMEY--ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT  149 (174)
Q Consensus        80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~  149 (174)
                      ....+++.+ ++++.++-..++.|+.+|...... ...+  ........++++|+++.|. +-..+..|+.+|+.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            456677888 777777777888999999875544 1111  1122235799999998554 55557789998865

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.93  E-value=0.034  Score=40.52  Aligned_cols=146  Identities=9%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             CcEEEEEeeCC------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec----------CCcEEEEEcCCC
Q 042260            4 PSVILATASYD------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG----------NPHIRLFDVNSS   66 (174)
Q Consensus         4 ~~~~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~   66 (174)
                      .+.+++.|+.+      ..+.+||..+++-...-..+.... ..+... ++.+++.++          ...+.+||..+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            35677777766      458889988765322211111111 122222 444444332          244788998776


Q ss_pred             CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEee
Q 042260           67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        67 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~  138 (174)
                      .+..+..+...+.....+.  .+++.++.|+.+     ..+.+||+.+......-..   ......+.+  ++..++.|+
T Consensus       180 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  255 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG  255 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred             eEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence            5543332222222222222  266777777654     3688999887654322111   122233333  566777777


Q ss_pred             CC-----CcEEEEeCCCCcce
Q 042260          139 QN-----GNIRVWDLTANSCS  154 (174)
Q Consensus       139 ~d-----~~i~iwd~~~~~~~  154 (174)
                      .+     ..+..||+++.+..
T Consensus       256 ~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTEEE
T ss_pred             cCCCeeeeeEEEEcCCCCeEE
Confidence            54     45899999987654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.86  E-value=0.075  Score=38.55  Aligned_cols=145  Identities=12%  Similarity=0.165  Sum_probs=78.1

Q ss_pred             cEEEEEeeCC-----CcEEEEECCCCc---eeEEeecCCCCe-EEEEEcCCCceEEEec------CCcEEEEEcCCCCCC
Q 042260            5 SVILATASYD-----KTIKFWEAKSGR---CYRTIQYPDSQV-NRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~D-----~~v~vwd~~~~~---~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~   69 (174)
                      +.+++.|+.+     ..+.+||..+++   -...-..+.... ..+... ++.+++.++      ...+.+||..+.++.
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            5677777765     458899987765   222111111111 122222 445544432      235788898777655


Q ss_pred             CeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCC-
Q 042260           70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQN-  140 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d-  140 (174)
                      .+......+.....+.  .+++.++.|+.+     ..+.++|+.+......-...   .....+.+  ++..++.|+.+ 
T Consensus       142 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  217 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG  217 (301)
T ss_dssp             EEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             ECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence            4433332222222222  367777777654     46889998876544322111   11222232  56677777764 


Q ss_pred             ----CcEEEEeCCCCcce
Q 042260          141 ----GNIRVWDLTANSCS  154 (174)
Q Consensus       141 ----~~i~iwd~~~~~~~  154 (174)
                          ..+.+||+++.+..
T Consensus       218 ~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             SSBCCCEEEEETTTTEEE
T ss_pred             CcccceEEEEeCCCCcEE
Confidence                45899999887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.85  E-value=0.052  Score=42.19  Aligned_cols=105  Identities=12%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             CCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-----------
Q 042260           45 PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-----------  111 (174)
Q Consensus        45 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------  111 (174)
                      .++.-++...++.+|.-++..+..-..+..+.  .-..+..+..+++|+++|..+.. .|.|-.+..+.           
T Consensus        30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence            34455555557889988887543111222221  12257789999999999887554 78888876221           


Q ss_pred             -eEEeec-------ccCcEEEEEEccCC---CEEEEeeCCCcEEEEeCCC
Q 042260          112 -CQMEYE-------SRAAVNTVVLHPNQ---TELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       112 -~~~~~~-------~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~  150 (174)
                       ....+.       .+.+|..+.|||-+   ..|++-..|+.||+||+..
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence             112222       24679999999954   5789999999999999997

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.73  E-value=0.045  Score=40.16  Aligned_cols=146  Identities=9%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             cEEEEEeeCC--------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-Eec-C-----CcEEEEEcCCCCC
Q 042260            5 SVILATASYD--------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAG-N-----PHIRLFDVNSSSP   68 (174)
Q Consensus         5 ~~~l~s~s~D--------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~-d-----~~i~i~d~~~~~~   68 (174)
                      +.+++.||.+        ..+.+||..+++-...-..+.... ..+... ++.+++ ++. +     ..+.+||..+.++
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            4566677743        458889988764322111111111 122222 344444 333 1     3578899877654


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCC-----cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ..+..+...+.....+.  .+++.++.|+.++     .+.+||+.+......-..   +.....+.+  ++..++.|+.+
T Consensus       178 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          178 KELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             EECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence            43332222222222222  3667777776654     588899887654432211   111222233  55666777653


Q ss_pred             C--------------cEEEEeCCCCccee
Q 042260          141 G--------------NIRVWDLTANSCSC  155 (174)
Q Consensus       141 ~--------------~i~iwd~~~~~~~~  155 (174)
                      +              .+..||+++.+...
T Consensus       254 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          254 TLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccCcCCccccccccCcEEEecCCCChhhh
Confidence            2              37789998876543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.68  E-value=0.12  Score=38.37  Aligned_cols=164  Identities=10%  Similarity=0.034  Sum_probs=90.6

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+.++-...+.|.++++........+...-.....+++.|.+. ++.+- + .+.|...+......  ............
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~l~~Pn  169 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYWPN  169 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSCEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--EEEEECCCCCcc
Confidence            3444545556677777654322222222334567888988544 44433 2 35576677653321  111222334567


Q ss_pred             EEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           83 AVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        83 ~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      .+++++++ ++.++-+..+.|..+|+.......... .......+++. .+..+.+-...+.|..+|..+++....+..+
T Consensus       170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~  248 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSD  248 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred             EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence            89999754 455666677899999986432222122 23345677774 3444556556788999999877654443221


Q ss_pred             -cceeEEEEEeec
Q 042260          161 -YGLRTFLFYHQD  172 (174)
Q Consensus       161 -~~~~~~~~~~~~  172 (174)
                       ..+....+||+.
T Consensus       249 ~~~P~~i~v~~~~  261 (318)
T 3sov_A          249 IFSPMDIHAFSQQ  261 (318)
T ss_dssp             CSSCCCEEEECGG
T ss_pred             CCCCcEEEEeccc
Confidence             233445566653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.65  E-value=0.15  Score=39.11  Aligned_cols=164  Identities=12%  Similarity=0.027  Sum_probs=93.8

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+.++-...+.|.+.++........+...-.....++++|.+..+ .+- + .+.|...++.....  ............
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--~~~~~~~l~~P~  249 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPN  249 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--EEEECSSCSCEE
T ss_pred             ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--EEEEECCCCceE
Confidence            344455555666666665443333333233447789999854444 333 2 35677777754322  222223345678


Q ss_pred             EEEEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .+++++.+.. .++-...+.|...|+...........   -.....+++ ..+..+.+-...+.|..+|..+++....+.
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            8999976554 45556678899999875432222221   233456666 344555566667889999987776655543


Q ss_pred             c-ccceeEEEEEeec
Q 042260          159 L-QYGLRTFLFYHQD  172 (174)
Q Consensus       159 ~-~~~~~~~~~~~~~  172 (174)
                      . ...+....+||+-
T Consensus       329 ~~~~~p~~i~v~~~~  343 (400)
T 3p5b_L          329 ENLLSPEDMVLFHNL  343 (400)
T ss_dssp             CSCSCEEEEEEESGG
T ss_pred             cCCCCCceEEEEeec
Confidence            2 2345667777753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.63  E-value=0.1  Score=43.28  Aligned_cols=141  Identities=11%  Similarity=0.030  Sum_probs=84.2

Q ss_pred             EEeeCCCcEEEEECCCCceeEEe---ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260            9 ATASYDKTIKFWEAKSGRCYRTI---QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG   85 (174)
Q Consensus         9 ~s~s~D~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~   85 (174)
                      -.|..++-|..||..++....-.   ......|.++...+++.+.++..++.+..+|..+++.............|.++.
T Consensus       377 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~  456 (781)
T 3v9f_A          377 WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY  456 (781)
T ss_dssp             EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE
Confidence            34454455788887654332111   123356888888888888887766678888876543211100011235688888


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-c-----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-S-----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ..++++..+.. . +-+..+|..+........ .     ...|.++...++++..+ |+.++.+..||...++
T Consensus       457 ~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          457 EDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             ECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred             ECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence            77777655544 4 458888887654332221 1     35689999888877554 4554458888887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.55  E-value=0.15  Score=38.16  Aligned_cols=144  Identities=6%  Similarity=-0.007  Sum_probs=81.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.+..+-...+.|..++..++.....+........++++.+. +.+..+ ...+.|.+.++.....  ............
T Consensus        85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~  162 (349)
T 3v64_C           85 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPR  162 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEE
T ss_pred             cEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcc
Confidence            334444444555666665544322222222223467788764 333333 3456788888765422  222233345678


Q ss_pred             EEEEeeCC-CEEEEecCC-CcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCCC
Q 042260           83 AVGFQCDG-NWMYSGSED-GTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLTA  150 (174)
Q Consensus        83 ~~~~~~~~-~~l~t~~~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~  150 (174)
                      .+++.|.+ .++++-..+ +.|...++.......... .-...+.++++|.+..|.. -+..+.|..+|+..
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            89999754 455555555 788888887543222222 2245789999987666554 44567899999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.52  E-value=0.02  Score=47.31  Aligned_cols=163  Identities=13%  Similarity=0.063  Sum_probs=87.1

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .++++-...+.|.+.++........+.........++++|.+. ++.+. +. +.|..+++...... .+ .........
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l-~~~~l~~Pn  543 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-VTENIQWPN  543 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE-SCSSCSSCC
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE-EeCCCCCcc
Confidence            3444545566777777664433222222223456788888544 33332 22 45666665432211 11 112234456


Q ss_pred             EEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .++++++ ++++++-+..+.|..+|+...........   ......+++..+ ..+.+....+.|..+|..+++....+.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            7889875 55667777788999999865322221111   122344555433 445555667889999988776655543


Q ss_pred             cc-cceeEEEEEee
Q 042260          159 LQ-YGLRTFLFYHQ  171 (174)
Q Consensus       159 ~~-~~~~~~~~~~~  171 (174)
                      .+ ..+....++|+
T Consensus       623 ~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          623 ENLLSPEDMVLFHQ  636 (699)
T ss_dssp             TTCSSCCCCCBCSS
T ss_pred             cCCCCCcEEEEeCc
Confidence            32 23344445554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.50  E-value=0.11  Score=37.89  Aligned_cols=145  Identities=10%  Similarity=0.136  Sum_probs=75.6

Q ss_pred             cEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~   72 (174)
                      +.+++.|+.+     ..+.+||..+++-...-..+.... ..+... ++.+++. +.+     ..+.+||..+.++..+.
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  200 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence            4566666654     357888887754322211111111 122222 4444443 322     45788998776544332


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC----
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN----  140 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d----  140 (174)
                      .+...+.....+.+  +++.++.|+.+     ..+.+||+.+.........   +.....+.+  ++..++.|+.+    
T Consensus       201 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~  276 (308)
T 1zgk_A          201 AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTF  276 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCB
T ss_pred             CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcc
Confidence            22222222222222  67777777654     5689999987654432111   111222222  56677777754    


Q ss_pred             -CcEEEEeCCCCcce
Q 042260          141 -GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -~~i~iwd~~~~~~~  154 (174)
                       ..+.+||+++.+..
T Consensus       277 ~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          277 LDSVECYDPDTDTWS  291 (308)
T ss_dssp             CCEEEEEETTTTEEE
T ss_pred             cceEEEEcCCCCEEe
Confidence             35889999887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.48  E-value=0.17  Score=37.88  Aligned_cols=165  Identities=8%  Similarity=-0.004  Sum_probs=92.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+.++-...+.|.+.+.........+...-....+++++|.+..+ .+- +. +.|...+.......  ..........
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~~~~~P  205 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIADTHLFWP  205 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESCCSSCSCE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEEECCCCCc
Confidence            3445555556677777765433222222223456889999855443 332 33 55777776543221  1112233457


Q ss_pred             EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ..++++++ +++.++-...+.|..+|+.......... .-.....+++ ..+....+-...+.|...|..++.....+..
T Consensus       206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence            88999975 4455666667889999987533222121 2234577777 3455555666677898888666654444321


Q ss_pred             -ccceeEEEEEeec
Q 042260          160 -QYGLRTFLFYHQD  172 (174)
Q Consensus       160 -~~~~~~~~~~~~~  172 (174)
                       ...+....++|+.
T Consensus       285 ~~~~p~gi~v~~~~  298 (349)
T 3v64_C          285 KLHFPMDIHTLHPQ  298 (349)
T ss_dssp             SCSCCCCEEEECGG
T ss_pred             CCCCCceEEEEccc
Confidence             2234456667753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.44  E-value=0.12  Score=37.76  Aligned_cols=145  Identities=10%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             cEEEEEeeC----C-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec------CCcEEEEEcCCCCC
Q 042260            5 SVILATASY----D-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG------NPHIRLFDVNSSSP   68 (174)
Q Consensus         5 ~~~l~s~s~----D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~   68 (174)
                      +.+++.||.    +     ..+.+||..+++-...-..+.... ..++.. ++.+++.++      ...+.+||..+.++
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            456666765    2     458888887764322111111111 122222 445444432      24578889877654


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      ..+..+...+.....+.+  +++.++.|+.+     ..+.++|+.+......-..   +.....+.+  ++..++.|+.+
T Consensus       150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  225 (308)
T 1zgk_A          150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD  225 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence            333222222222223222  66777777654     4588899887654322111   111223333  56677777654


Q ss_pred             -----CcEEEEeCCCCcce
Q 042260          141 -----GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -----~~i~iwd~~~~~~~  154 (174)
                           ..+.+||+.+.+..
T Consensus       226 ~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          226 GQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             SSSBCCCEEEEETTTTEEE
T ss_pred             CCCccceEEEEeCCCCcEE
Confidence                 45899999887644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.43  E-value=0.17  Score=37.25  Aligned_cols=165  Identities=12%  Similarity=0.032  Sum_probs=92.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+.++-..++.|.+.|.........+........+++++|.+. ++.+. +. +.|...+..... . ...........
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~-~~~~~~~~~~P  166 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I-YSLVTENIQWP  166 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E-EEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-e-EEEEECCCCCc
Confidence            34455555566777777664333222222334578899998544 44443 22 567767764321 1 11112234567


Q ss_pred             EEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260           82 MAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus        82 ~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      ..++++++++ ..++-+..+.|..+|+..........   .-.....+++. .+..+.+-..++.|..+|..+++....+
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            7899997655 45556667899999987532221111   12345677774 4555556666788999998776544443


Q ss_pred             Ccc-cceeEEEEEeec
Q 042260          158 GLQ-YGLRTFLFYHQD  172 (174)
Q Consensus       158 ~~~-~~~~~~~~~~~~  172 (174)
                      ... ..+....++|+.
T Consensus       246 ~~~~~~p~~i~v~~~~  261 (316)
T 1ijq_A          246 AENLLSPEDMVLFHNL  261 (316)
T ss_dssp             ECSCSCCCCEEEESGG
T ss_pred             ecCCCCceEEEEeccc
Confidence            211 234445566643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.35  Score=40.09  Aligned_cols=140  Identities=11%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             EeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEE
Q 042260           10 TASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAV   84 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~   84 (174)
                      .|..++-+..+|.++++...-..  .....|.++...+++.+.++.. +.+..+|..++.........   .....+.++
T Consensus       422 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  500 (781)
T 3v9f_A          422 FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI  500 (781)
T ss_dssp             EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred             EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence            35555567888877665332211  1235688888888888877765 67888998765443222111   013568888


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      ...++|+..+....+| +..+|.+.........    ....|.++...++++..++ +.+|-|..||..+++
T Consensus       501 ~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          501 AQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD  570 (781)
T ss_dssp             EECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred             EEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence            8888887655544344 7778887655432211    1346889998888876554 445544888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.35  E-value=0.14  Score=37.21  Aligned_cols=145  Identities=15%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCce-EEEecC-----CcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHY-LAAAGN-----PHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~-~~~~~d-----~~i~i~d~~~~~~~~~~   72 (174)
                      +.+++.||.++     .+.+||..+++-...-..+.... ..++.. ++.+ ++++.+     ..+.+||..+.++..+.
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            55777777653     58888987765322211111111 122222 3444 444433     23678888776544332


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCC-------CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC--
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSED-------GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN--  140 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d--  140 (174)
                      .+...+.....+.  .+++.++.|+.+       ..+.+||+.+......-..   ......+.+  ++..++.|+.+  
T Consensus       141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  216 (302)
T 2xn4_A          141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGP  216 (302)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSS
T ss_pred             CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCC
Confidence            2222222222222  356677776542       3588999887654432111   111222232  56677777754  


Q ss_pred             ---CcEEEEeCCCCcce
Q 042260          141 ---GNIRVWDLTANSCS  154 (174)
Q Consensus       141 ---~~i~iwd~~~~~~~  154 (174)
                         ..+.+||+++....
T Consensus       217 ~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          217 LVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             SBCCCEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCCEe
Confidence               35889999887644

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.34  E-value=0.17  Score=36.40  Aligned_cols=147  Identities=9%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC-CCeEEe------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP-QPVMSY------   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-~~~~~~------   74 (174)
                      .+.+.+....++.|...|.. ++.++.+... .....++++.+++.++++. .++.+.++++..... ......      
T Consensus        38 ~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~  116 (255)
T 3qqz_A           38 SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQE  116 (255)
T ss_dssp             TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred             CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccc
Confidence            45677777788889999988 8888877543 2457888898888876665 456788888765432 111111      


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEeec-------ccCcEEEEEEccCCCEE-EEeeCCCc
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEYE-------SRAAVNTVVLHPNQTEL-ISGDQNGN  142 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l-~s~~~d~~  142 (174)
                      ...+....+++|++.++.|+++.+.....+|.++.    ........       ....+.+++++|....+ +....++.
T Consensus       117 ~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~  196 (255)
T 3qqz_A          117 SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA  196 (255)
T ss_dssp             CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence            12345579999999887777776665555655531    11111100       12346899999966554 44555667


Q ss_pred             EEEEeCCCC
Q 042260          143 IRVWDLTAN  151 (174)
Q Consensus       143 i~iwd~~~~  151 (174)
                      +..+|.+-.
T Consensus       197 L~~~d~~g~  205 (255)
T 3qqz_A          197 LQEVTLVGE  205 (255)
T ss_dssp             EEEECTTCC
T ss_pred             EEEEcCCCC
Confidence            777886643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.33  E-value=0.25  Score=38.24  Aligned_cols=144  Identities=10%  Similarity=0.032  Sum_probs=84.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEe-ecC-CCCeEEEEEcCCCce-EEE-ecCCcEEEEEcCC--CCCCCeEEeec--
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTI-QYP-DSQVNRLEITPNKHY-LAA-AGNPHIRLFDVNS--SSPQPVMSYDQ--   76 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~-~~~-~~d~~i~i~d~~~--~~~~~~~~~~~--   76 (174)
                      +.+.++-..++.|+.+|..++.....+ ... ...-..++++|++.. .++ ...+.|+.++...  +.......+.+  
T Consensus       240 G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~  319 (433)
T 4hw6_A          240 GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH  319 (433)
T ss_dssp             CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred             CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence            445556666778888888766652222 221 122346999999873 333 3456788877653  21111111111  


Q ss_pred             -------------CCCCEEEEEE---------eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc----------------
Q 042260           77 -------------HTNNVMAVGF---------QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES----------------  118 (174)
Q Consensus        77 -------------~~~~v~~~~~---------~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~----------------  118 (174)
                                   .-.....+++         .+++++.++-...+.|+.++.. .........                
T Consensus       320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~  398 (433)
T 4hw6_A          320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQ  398 (433)
T ss_dssp             TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTT
T ss_pred             CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccc
Confidence                         1133567888         6777888888888899999864 332221111                


Q ss_pred             --cCcEEEEEEc-cCCCEEEEeeCCCcEEEEeCC
Q 042260          119 --RAAVNTVVLH-PNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       119 --~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~  149 (174)
                        -.....+++. +++.++++-..+..|+..+++
T Consensus       399 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          399 ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence              0236789999 566666665667788887764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.29  E-value=0.24  Score=37.61  Aligned_cols=144  Identities=6%  Similarity=-0.002  Sum_probs=81.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.++.+-...+.|..++..++.....+........++++.+. +.+..+ ...+.|.+.++....  .............
T Consensus       128 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~P~  205 (386)
T 3v65_B          128 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPR  205 (386)
T ss_dssp             TEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--CEEEECSSCSCEE
T ss_pred             CeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--eEEeecCCCCCCc
Confidence            344555555566666666544322222222223456777764 333333 345667777775432  2222233345678


Q ss_pred             EEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           83 AVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        83 ~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      .+++.|.+. ++++-..+ +.|...++.......... .-...+.++++|++..|. +-+..+.|..+|+..
T Consensus       206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            899987555 44554444 788888887543322222 233478999998666655 445567899999874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.25  E-value=0.32  Score=38.54  Aligned_cols=144  Identities=10%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEE-------cCCCc-eEEEecCC-------cEEEEEcCC-
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEI-------TPNKH-YLAAAGNP-------HIRLFDVNS-   65 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~-~~~~~~d~-------~i~i~d~~~-   65 (174)
                      +.++++-...+.|++.|.+++....-....   -.....++|       ++++. ++++...+       .+.+.+... 
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            345555554567888888876654333322   124788999       88887 45544322       245555333 


Q ss_pred             CCCCC-e--EEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCC-------CCee--------------EEeecccC
Q 042260           66 SSPQP-V--MSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLR-------APVC--------------QMEYESRA  120 (174)
Q Consensus        66 ~~~~~-~--~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~-------~~~~--------------~~~~~~~~  120 (174)
                      +.... .  ..+.. -.....++.++ ++.++++-..++.|..+|+.       ....              ........
T Consensus       232 G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          232 GTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             SCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             Cceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence            22221 0  11111 12345667788 56667778888899999987       3332              11222234


Q ss_pred             cEEEEEEccCCCEE-EEeeCCCcEEEEeCC
Q 042260          121 AVNTVVLHPNQTEL-ISGDQNGNIRVWDLT  149 (174)
Q Consensus       121 ~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~  149 (174)
                      ....++++|+++.| ++-+.+..|+.+|..
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            46799999999954 455567788886654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.22  E-value=0.097  Score=38.97  Aligned_cols=141  Identities=9%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             CcEEEEECCCCceeEEeecCCC-Ce-EEEEEcCCCceE-EEec------CCcEEEEEc--CCCCCCCeEEeecCCCCEEE
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDS-QV-NRLEITPNKHYL-AAAG------NPHIRLFDV--NSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~~-~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~   83 (174)
                      ..+.+||..+.+-...-..+.. .. .++... ++.++ +++.      ...+..||+  .+..+..+..+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4788999887653322222211 12 233333 34444 4332      234667776  44333322222112221121


Q ss_pred             EEEeeCCCEEEEecCC----------------------CcEEEEeCCCCeeEEe--ecc-cCcEEEEEEccCCCEEEEee
Q 042260           84 VGFQCDGNWMYSGSED----------------------GTVKIWDLRAPVCQME--YES-RAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~d----------------------g~v~iwd~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~s~~  138 (174)
                      .+...+++.++.|+.+                      ..+.+||+.+......  ... +....++.  .++..++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence            2233466777777632                      2577889876543322  111 11122222  3667777787


Q ss_pred             CCC------cEEEEeCCCCcceeecC
Q 042260          139 QNG------NIRVWDLTANSCSCELG  158 (174)
Q Consensus       139 ~d~------~i~iwd~~~~~~~~~~~  158 (174)
                      .++      .|.+++++.++...+-+
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            543      36667998888776644

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.11  E-value=0.2  Score=36.04  Aligned_cols=113  Identities=10%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             CCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260           35 DSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC  112 (174)
Q Consensus        35 ~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~  112 (174)
                      ...+.+++++|++..+.+ . .++.|...|.. ++......+.+ ......+++.+++.++++.-.++.+.++++.....
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            346899999987554443 3 34456666665 33222222222 35788999988888877766778888888754321


Q ss_pred             ---EEee--c-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260          113 ---QMEY--E-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       113 ---~~~~--~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                         ....  .     .+...-.++++|.++.|.++.+.....+|.+.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence               1111  1     23346899999998887777665555555554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.08  E-value=0.53  Score=39.52  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=91.0

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+.++-...+.|.+.++........+...-....+++++|.+. ++.+- +. ..|...++....  .............
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~  561 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPN  561 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEEEeCCCCCce
Confidence            4555656667777777664433222332334578899998644 44433 23 557777775432  2222233345688


Q ss_pred             EEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-
Q 042260           83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-  157 (174)
Q Consensus        83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  157 (174)
                      .+++.+.+. +.++-...+.|...|+...........   -.....|++. .+.+..+-...+.|...|..+++....+ 
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            899986544 455556667899999865433222221   1234566663 2344445556778888887776544333 


Q ss_pred             CcccceeEEEEEee
Q 042260          158 GLQYGLRTFLFYHQ  171 (174)
Q Consensus       158 ~~~~~~~~~~~~~~  171 (174)
                      .....+....+||+
T Consensus       641 ~~l~~P~~i~v~h~  654 (791)
T 3m0c_C          641 ENLLSPEDMVLFHN  654 (791)
T ss_dssp             CSCSCCCCEEEESG
T ss_pred             cCCCCceeEeeecc
Confidence            12223445566775

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.03  E-value=0.15  Score=37.39  Aligned_cols=145  Identities=12%  Similarity=0.166  Sum_probs=73.3

Q ss_pred             cEEEEEeeCC-------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec-------CCcEEEEEcCCCCCC
Q 042260            5 SVILATASYD-------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG-------NPHIRLFDVNSSSPQ   69 (174)
Q Consensus         5 ~~~l~s~s~D-------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~   69 (174)
                      +.+++.||.+       ..+.+||..+.+-...-..+.... ..+.. .++.+++.++       ...+.+||..+.++.
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            4566777764       347888887754332211121111 12222 2445444332       134788998876554


Q ss_pred             CeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC-
Q 042260           70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN-  140 (174)
Q Consensus        70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d-  140 (174)
                      .+......+.....+.  .+++.++.|+.+     ..+.+||+.+......-..   +.....+.+  ++..++.|+.+ 
T Consensus       189 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (318)
T 2woz_A          189 DLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAM  264 (318)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCC
T ss_pred             ECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeec
Confidence            3322222222222222  356777777643     3577889877554322111   111222222  55666777653 


Q ss_pred             -------------CcEEEEeCCCCcce
Q 042260          141 -------------GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -------------~~i~iwd~~~~~~~  154 (174)
                                   ..+..||+++.+..
T Consensus       265 ~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          265 IQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             BC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             cCCCCceeccceeeeEEEEeCCCCEeh
Confidence                         35788998887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.97  E-value=0.29  Score=35.60  Aligned_cols=142  Identities=12%  Similarity=0.063  Sum_probs=81.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCc--EEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPH--IRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.++++-..++.|..||..+ +....+.. ......+++.+++.++++.. ...  +..+|..+++...+.... ....
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~  118 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIF  118 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSC
T ss_pred             CCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-Cccc
Confidence            345666666778888888764 33333332 34678899999888766553 223  555666655433222211 1122


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-e----------cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-Y----------ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDL  148 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~  148 (174)
                      ...++..+.+..+++...++.|..+|......... .          ..-...+.+  +|++..|. +-..++.|..+|+
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~  196 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV  196 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence            33444444555566666788999999875421110 0          011234555  77777655 4455778999998


Q ss_pred             CC
Q 042260          149 TA  150 (174)
Q Consensus       149 ~~  150 (174)
                      ..
T Consensus       197 ~~  198 (306)
T 2p4o_A          197 DS  198 (306)
T ss_dssp             CT
T ss_pred             CC
Confidence            75

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.93  E-value=0.3  Score=35.41  Aligned_cols=145  Identities=12%  Similarity=0.136  Sum_probs=75.9

Q ss_pred             cEEEEEeeCC----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecC------CcEEEEEcCCCCCCCeE
Q 042260            5 SVILATASYD----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGN------PHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d------~~i~i~d~~~~~~~~~~   72 (174)
                      +.+++.||.+    ..+.+||..+++-...-..+.... ..+... ++.+++ ++.+      ..+.+||..+..+..+.
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            5567777765    668889988765332222221111 122222 444444 4332      34788898776544332


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCC
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      .+...+.....+.  .+++.++.|+.         -..+.+||+.+......-...   .....+.+  ++..++.|+.+
T Consensus       135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  210 (306)
T 3ii7_A          135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN  210 (306)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence            2222222222222  36677777653         345889999876543322211   11222222  56667777654


Q ss_pred             -----CcEEEEeCCCCcce
Q 042260          141 -----GNIRVWDLTANSCS  154 (174)
Q Consensus       141 -----~~i~iwd~~~~~~~  154 (174)
                           ..+..||+.+.+..
T Consensus       211 ~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEE
T ss_pred             CCCCCceEEEeeCCCCcEE
Confidence                 35889999887544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.67  E-value=0.43  Score=35.26  Aligned_cols=140  Identities=8%  Similarity=0.039  Sum_probs=68.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-CCCCeEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-SPQPVMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~   78 (174)
                      ++..++ ++.++.| +.....|+....+..    ....+..+.+.+ +..++.+..+.+.. .-..+ ..........+.
T Consensus        46 ~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~  121 (327)
T 2xbg_A           46 RHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLP  121 (327)
T ss_dssp             SSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCS
T ss_pred             CCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCC
Confidence            344555 4556754 333344444333322    234578888876 45555554554332 22111 111111111122


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      ..+..+.+.++++.++.+...+..+-.|-...-..........+..+++.|++..++.+...+..+.+|
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            456677777777766666433333444432211111122345688899999888777664443344444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.52  E-value=0.5  Score=34.93  Aligned_cols=111  Identities=9%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-CCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260           35 DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-SPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC  112 (174)
Q Consensus        35 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~  112 (174)
                      ...+..+.+.+++.+++.+.++.++..+...+ ....+... -.....+..+.+.+++..++.+. ++.+ ++.....+.
T Consensus       204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t  281 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT  281 (327)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS
T ss_pred             CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc
Confidence            44678888888888777776776666532111 11111100 01123578888887777666655 5655 344443332


Q ss_pred             EEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260          113 QMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus       113 ~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      -....    ....+.++.+.+++ .+++++.+|.|.-++-
T Consensus       282 W~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          282 WQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             CEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             cEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            22222    13457788887544 4666778888777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.42  E-value=0.5  Score=34.35  Aligned_cols=122  Identities=11%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             CceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--c
Q 042260           25 GRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--T  101 (174)
Q Consensus        25 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~  101 (174)
                      .+.+..+... .....+++++++.++++. .++.|..+|.... .  ..... .......+++.++|+++++.....  .
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~--~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q--QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E--EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e--EEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            3344445332 457789999988876665 5677888886542 1  11122 235688899999999777664432  4


Q ss_pred             EEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          102 VKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       102 v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      |..+|..+........  .......++..+.+..+++-..++.|..+|...+
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            6667766655432222  2223455555555554555545788888887653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.40  E-value=1  Score=37.81  Aligned_cols=144  Identities=9%  Similarity=-0.050  Sum_probs=80.8

Q ss_pred             EEEEEeeCCCcEEEEECCCC----ceeEEeecCCCCeEEEEEcCCCceEE-E-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            6 VILATASYDKTIKFWEAKSG----RCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      .++++-...+.|+.+++...    .....+...-....++++.+.+..|. + ...+.|.+.++.....  .........
T Consensus       437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~  514 (791)
T 3m0c_C          437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGS  514 (791)
T ss_dssp             EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTC
T ss_pred             eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCC
Confidence            34444444555555555432    11111221223456788876553333 3 3566788888864422  222223445


Q ss_pred             CEEEEEEeeCCC-EEEEecC-CCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCDGN-WMYSGSE-DGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~~~-~l~t~~~-dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~  151 (174)
                      ....+++.+.+. ++++-.. .+.|...++........... -...+.|++.+.+..|..+ .....|...|+.-.
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            688999998644 4455433 36888888876543333332 2467899999877666554 44567999998743

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.07  E-value=0.69  Score=33.97  Aligned_cols=144  Identities=10%  Similarity=-0.015  Sum_probs=82.3

Q ss_pred             cEEEEEeeCCCcEEEEECCC---CceeEEe-ecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKS---GRCYRTI-QYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      +.+..+-..++.|..+++.+   +.....+ ...-....++++.+. +.+..+ ...+.|.+.++.....  ........
T Consensus        42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~  119 (316)
T 1ijq_A           42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENG  119 (316)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTT
T ss_pred             CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--EEEEECCC
Confidence            45566666667777777665   1222222 112134567888764 444333 4567788888864321  11122234


Q ss_pred             CCEEEEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~  150 (174)
                      .....+++.|.+. .+++.... +.|...++......... ..-...+.++++|++..|.. -+..+.|..+|+..
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            5678899987555 44444333 68888887643322211 22345789999987766654 44567899999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.02  E-value=0.82  Score=34.56  Aligned_cols=136  Identities=8%  Similarity=0.066  Sum_probs=80.1

Q ss_pred             CCCcEEEEECCCCc-eeEEee--c-----CCCCeEEEEEcC--CCc--eEEE-ec--CCcEEEEEcCCCCC--CCeEEee
Q 042260           13 YDKTIKFWEAKSGR-CYRTIQ--Y-----PDSQVNRLEITP--NKH--YLAA-AG--NPHIRLFDVNSSSP--QPVMSYD   75 (174)
Q Consensus        13 ~D~~v~vwd~~~~~-~~~~~~--~-----~~~~v~~~~~~~--~~~--~~~~-~~--d~~i~i~d~~~~~~--~~~~~~~   75 (174)
                      .+|.|.++|.++.. ....+.  .     ......++.+.+  ++.  ++++ ..  +..+.+|++.....  ..+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987421 122222  1     123466777654  332  3333 22  45677887755322  2222233


Q ss_pred             cC-CCCEEEEEEeeCCCEEEEec-----------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260           76 QH-TNNVMAVGFQCDGNWMYSGS-----------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus        76 ~~-~~~v~~~~~~~~~~~l~t~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  137 (174)
                      +. ......+.+.++|.+.++..                 ..|.+.-+|..  .+......-...+.++|+|+++.|..+
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence            22 34578889999999888764                 12455556653  222222333457999999999877654


Q ss_pred             -eCCCcEEEEeCCC
Q 042260          138 -DQNGNIRVWDLTA  150 (174)
Q Consensus       138 -~~d~~i~iwd~~~  150 (174)
                       +..+.|..||+..
T Consensus       239 dt~~~~I~~~~~~~  252 (355)
T 3sre_A          239 ELLAHKIHVYEKHA  252 (355)
T ss_dssp             EGGGTEEEEEEECT
T ss_pred             eCCCCeEEEEEECC
Confidence             4567899999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.89  E-value=0.98  Score=34.84  Aligned_cols=145  Identities=8%  Similarity=0.028  Sum_probs=81.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCce-EEEe-cCCcEEEEEcCCC--CCCCeEEeecC-
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHY-LAAA-GNPHIRLFDVNSS--SPQPVMSYDQH-   77 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~-~d~~i~i~d~~~~--~~~~~~~~~~~-   77 (174)
                      .+.++++-..++.|..++..++......... ......++++|++.. +++. ..+.|..++....  .......+.+. 
T Consensus       237 ~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~  316 (430)
T 3tc9_A          237 NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ  316 (430)
T ss_dssp             TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC
Confidence            3456666666778888888766542222222 234678999999874 3333 4667888776432  11001111110 


Q ss_pred             --------------CCCEE-EEEEe--------eCCCEEEEecCCCcEEEEeCCCCeeEEeecc---------c------
Q 042260           78 --------------TNNVM-AVGFQ--------CDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---------R------  119 (174)
Q Consensus        78 --------------~~~v~-~~~~~--------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------~------  119 (174)
                                    -..-. .+...        +++.+.++-...+.|+.+|.. .........         .      
T Consensus       317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~  395 (430)
T 3tc9_A          317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQE  395 (430)
T ss_dssp             TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTT
T ss_pred             CCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhh
Confidence                          11122 34442        346677777777889998843 333222211         0      


Q ss_pred             ---CcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260          120 ---AAVNTVVLHPN-QTELISGDQNGNIRVWDLT  149 (174)
Q Consensus       120 ---~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~  149 (174)
                         .....+++.|+ +.++++-..+..|+..+++
T Consensus       396 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          396 ARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence               14789999994 5555565567778887764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.88  E-value=0.35  Score=39.82  Aligned_cols=150  Identities=13%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             CcEEEEEeeCCC------cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecCC--cEEEEEcCCCCCCCeEE
Q 042260            4 PSVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGNP--HIRLFDVNSSSPQPVMS   73 (174)
Q Consensus         4 ~~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d~--~i~i~d~~~~~~~~~~~   73 (174)
                      ++.+++.||.++      .+.+||..+.+-...-..+.... .+++.-.++.+++ ++.+.  .+.+||..+..+..+..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            456777777643      47888887754322111111111 2233322455444 44222  68899988765443322


Q ss_pred             ---eecCCCCEEEEEEeeC-CCEEEEecC--C-----CcEEEEeCCCCe------eEEeec----ccCcEEEEEEccCCC
Q 042260           74 ---YDQHTNNVMAVGFQCD-GNWMYSGSE--D-----GTVKIWDLRAPV------CQMEYE----SRAAVNTVVLHPNQT  132 (174)
Q Consensus        74 ---~~~~~~~v~~~~~~~~-~~~l~t~~~--d-----g~v~iwd~~~~~------~~~~~~----~~~~v~~~~~~~~~~  132 (174)
                         ....+....++.+..+ ++.++.|+.  +     ..+..||+.+..      ......    .+.....+ ...++.
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~  609 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRK  609 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCE
Confidence               1222233333444444 667777765  2     358889987655      221111    11122222 333366


Q ss_pred             EEEEeeCC--------CcEEEEeCCCCcce
Q 042260          133 ELISGDQN--------GNIRVWDLTANSCS  154 (174)
Q Consensus       133 ~l~s~~~d--------~~i~iwd~~~~~~~  154 (174)
                      .++.|+.+        ..|.+||+.+....
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            77777642        45999999987654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.65  E-value=0.87  Score=33.12  Aligned_cols=143  Identities=10%  Similarity=0.038  Sum_probs=73.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceE-EEec----C-------CcEEEEEcCCCCCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYL-AAAG----N-------PHIRLFDVNSSSPQP   70 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~~~~----d-------~~i~i~d~~~~~~~~   70 (174)
                      ..+++.|+  ..+..||..+++-.. ...  +...........++.++ +++.    +       ..+..||..+.++..
T Consensus         5 ~~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            5 DLIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             eEEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            44566677  579999998876432 222  21223333333344544 4442    1       125678887665433


Q ss_pred             eEEeecCCCCEEEEEEeeCCCEEEEecCC--------CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeC
Q 042260           71 VMSYDQHTNNVMAVGFQCDGNWMYSGSED--------GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      +..++..+.....+.  -+++.++.|+.+        ..+.++|..+......-..   +.....+.  .++..++.|+.
T Consensus        82 ~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~  157 (315)
T 4asc_A           82 MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGK  157 (315)
T ss_dssp             CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCC
Confidence            222221111112222  256677777632        4588899887654322111   11122222  35666677765


Q ss_pred             -C-----CcEEEEeCCCCcce
Q 042260          140 -N-----GNIRVWDLTANSCS  154 (174)
Q Consensus       140 -d-----~~i~iwd~~~~~~~  154 (174)
                       +     ..+..||+.+.+..
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~  178 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWK  178 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEE
T ss_pred             CCCCcccceEEEEeCCCCeEE
Confidence             2     35899999887544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.65  E-value=1.5  Score=35.70  Aligned_cols=164  Identities=10%  Similarity=0.005  Sum_probs=87.3

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+.++-...+.|.+.++........+...-....+++++|. +.++.+-.  ...|...++.....  ...........
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~~P  173 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYWP  173 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSSE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--EEEEeCCCCCC
Confidence            445556666677777776643322222222234567888886 44444432  23455555543322  22222234567


Q ss_pred             EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ..+++++. ++..++-...+.|...|+.......... .......+++..+ ....+-..++.|...|..+++....+..
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~  252 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS  252 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence            88999875 4455555667789999887543222111 1122345666544 4444555677899999887765433321


Q ss_pred             -ccceeEEEEEee
Q 042260          160 -QYGLRTFLFYHQ  171 (174)
Q Consensus       160 -~~~~~~~~~~~~  171 (174)
                       ...+....+||+
T Consensus       253 ~~~~p~~i~v~~~  265 (619)
T 3s94_A          253 DIFSPMDIHAFSQ  265 (619)
T ss_dssp             CCCCCSEEEECCG
T ss_pred             CCCCCcEEEEEcc
Confidence             123445556775

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.55  E-value=2.1  Score=37.51  Aligned_cols=131  Identities=8%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             cEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC-----
Q 042260           16 TIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD-----   89 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----   89 (174)
                      .|++.+...+..+..+..+. ..|...+.+.. .++++ .++.+..+.+..++...... ..-...+.++++.+.     
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-~vvva-~g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNSS-QVVVA-VGRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECSS-EEEEE-ETTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTT
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-EEEEE-ECCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcc
Confidence            36666665555565665442 34666666543 33333 35667777775443222222 123567999998753     


Q ss_pred             -CCEEEEecC-CCcEEEEeCCCCeeEEeecc--cCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCC
Q 042260           90 -GNWMYSGSE-DGTVKIWDLRAPVCQMEYES--RAAVNTVVLHP--NQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        90 -~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~  149 (174)
                       ..+++-|.. |++++|+++...........  ...+.++.+..  ...+|..|-.||.+.-+.+.
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence             368888886 99999999987554433322  23445554432  34568889999987665554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.48  E-value=0.95  Score=37.28  Aligned_cols=147  Identities=12%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             cEEEEEeeCC----CcEEEEECCCCceeEEe-e-----cCCCCe-EEEEEcC-CCceEEEec-C------CcEEEEEcCC
Q 042260            5 SVILATASYD----KTIKFWEAKSGRCYRTI-Q-----YPDSQV-NRLEITP-NKHYLAAAG-N------PHIRLFDVNS   65 (174)
Q Consensus         5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~-~-----~~~~~v-~~~~~~~-~~~~~~~~~-d------~~i~i~d~~~   65 (174)
                      +.+++.||.+    ..+.+||..+++-...- .     .+.... .+++..+ ++.+++.++ +      ..+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            4566777754    46888998776533222 1     111111 2333332 445444332 2      2467888877


Q ss_pred             CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeec------ccCcEEEEEEccC-CCEEEE
Q 042260           66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYE------SRAAVNTVVLHPN-QTELIS  136 (174)
Q Consensus        66 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~s  136 (174)
                      ..+.....+...+.....+. ..+++.++.|+.++  .+.+||..+........      ......++++..+ +..++.
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~-~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACS-LPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEE-CTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCcccceEEE-EcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            65443332222222222222 23788888887654  69999998765443221      1112233455544 556677


Q ss_pred             eeC--C-----CcEEEEeCCCCc
Q 042260          137 GDQ--N-----GNIRVWDLTANS  152 (174)
Q Consensus       137 ~~~--d-----~~i~iwd~~~~~  152 (174)
                      |+.  +     ..+..||+.+..
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCcCCCCCeeeCcEEEEEccCCc
Confidence            765  2     358899999877

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.37  E-value=0.3  Score=40.33  Aligned_cols=144  Identities=10%  Similarity=-0.033  Sum_probs=74.6

Q ss_pred             cEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      +.++++-...+.|+.+++.+    ......+...-.....+++.+. +.++++ ...+.|.+.++.....  ........
T Consensus       418 ~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~--~~l~~~~~  495 (699)
T 1n7d_A          418 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFREQG  495 (699)
T ss_dssp             TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE--EEECCCSS
T ss_pred             CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce--EEEEeCCC
Confidence            33444444556666666654    1111111111112446777743 344433 3456788888764321  11112222


Q ss_pred             CCEEEEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCC
Q 042260           79 NNVMAVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTA  150 (174)
Q Consensus        79 ~~v~~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~  150 (174)
                      .....+++.+.+. ++++-... +.|...++......... ..-...+.|+++|++..| ++-+..+.|..+|+..
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            4456778887544 44444333 67888777543221111 112345789999876555 4445567899999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.04  E-value=1.5  Score=33.42  Aligned_cols=113  Identities=9%  Similarity=-0.041  Sum_probs=69.4

Q ss_pred             CCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC-EEEEecC-CCcEEEEeCCCCe
Q 042260           36 SQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN-WMYSGSE-DGTVKIWDLRAPV  111 (174)
Q Consensus        36 ~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~-dg~v~iwd~~~~~  111 (174)
                      ....++++.+. +.+..+ ...+.|.+.++....  ..............+++.|.+. ++++-.. .+.|...++....
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            34667888763 444333 345678888876442  2222233445678899998554 4444422 4788888887543


Q ss_pred             eEEeecc-cCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCC
Q 042260          112 CQMEYES-RAAVNTVVLHPNQTELISG-DQNGNIRVWDLTA  150 (174)
Q Consensus       112 ~~~~~~~-~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~  150 (174)
                      ....... -...+.++++|.+..|..+ +....|...|+..
T Consensus       237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            3222222 2467999999877766554 4567899999874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.03  E-value=1.7  Score=34.07  Aligned_cols=150  Identities=14%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC----CCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT----NNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~v   81 (174)
                      ++||--. ..++.+||+++.+.+.++...+.-+.--..++.  .++-..+..+..|++.. ...+...++.|.    .+|
T Consensus        78 ~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT~taVyHWsi~~-~s~P~kvFdR~~~L~~~QI  153 (494)
T 1bpo_A           78 KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQI  153 (494)
T ss_dssp             SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEECSSEEEEEESSS-SCCCEEEEECCGGGTTCEE
T ss_pred             cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEcCCeeEEecccC-CCCchhheecchhcccceE
Confidence            3444433 678999999999988888876654444444443  33333456788888865 334555555442    345


Q ss_pred             EEEEEeeCCCEEEEec-------CCCcEEEEeCCCCeeE-----------------------------------------
Q 042260           82 MAVGFQCDGNWMYSGS-------EDGTVKIWDLRAPVCQ-----------------------------------------  113 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~~-----------------------------------------  113 (174)
                      ..-..+++.++++-.+       -.|.+-+|..++...+                                         
T Consensus       154 InY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei  233 (494)
T 1bpo_A          154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV  233 (494)
T ss_dssp             EEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred             EEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence            5445555555544322       1244555554432110                                         


Q ss_pred             --------------Eee--cc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260          114 --------------MEY--ES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus       114 --------------~~~--~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                                    ...  ..   ..-..++.+++....+..-+.-|.|.+||++++.|.+.-+-
T Consensus       234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence                          000  00   11234556666666777778889999999999999987653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.62  E-value=2.5  Score=34.46  Aligned_cols=145  Identities=9%  Similarity=-0.009  Sum_probs=83.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      +.+..+-..++.|..+++........+...-....++++.+.+. +..+ ...+.|.+.++.....  ............
T Consensus        49 ~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~l~~~~l~~P~  126 (628)
T 4a0p_A           49 NRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QVLVWKDLDSPR  126 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--EEEECSSCCCEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EEEEeCCCCCcc
Confidence            44455555556666666554322222222223456788876443 3333 3456788888865422  122223445678


Q ss_pred             EEEEeeC-CCEEEEe-cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260           83 AVGFQCD-GNWMYSG-SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~-~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~  151 (174)
                      ++++.|. |.+++|- +..+.|...++...........-...+.+++++.+..|..+ ...+.|...|+...
T Consensus       127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            9999974 5555554 23567877777654433333344567999999977666544 45678999998753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.43  E-value=0.65  Score=34.90  Aligned_cols=113  Identities=13%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEc---CCCceEEE--ecCCcEEEEEcCCCCCCCeEEeec--
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEIT---PNKHYLAA--AGNPHIRLFDVNSSSPQPVMSYDQ--   76 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~---~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~--   76 (174)
                      +.+++.++.||.|.-.|.++|+..-.++... .++....-.   .++..++.  ..|+.+..++..++..+  ..+..  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc
Confidence            4578899999999999999999887776541 222221100   12233433  36888888887665211  11111  


Q ss_pred             --CCCCEEE--------EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc
Q 042260           77 --HTNNVMA--------VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR  119 (174)
Q Consensus        77 --~~~~v~~--------~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~  119 (174)
                        ...++..        ..-...+..+++|+.+|.+.-.|+++++.+..+...
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence              1111221        000114567899999999999999999988877643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.25  E-value=2.5  Score=33.46  Aligned_cols=152  Identities=10%  Similarity=0.037  Sum_probs=87.5

Q ss_pred             CcEEEEEeeCCCcEEEEECC-------CCce-----------eEE-eecC-CCCeEEEEEcCCCceEEE--ecCCcEEEE
Q 042260            4 PSVILATASYDKTIKFWEAK-------SGRC-----------YRT-IQYP-DSQVNRLEITPNKHYLAA--AGNPHIRLF   61 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~-------~~~~-----------~~~-~~~~-~~~v~~~~~~~~~~~~~~--~~d~~i~i~   61 (174)
                      .+.++++-..++.|..+|+.       ++..           ... +... ......++++|++..+..  ...+.|+.+
T Consensus       258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            35567777788889999887       4543           111 2222 233578999999884333  356678876


Q ss_pred             EcCCCC--CCCeEEeecC---------------CCCEE-EEEEe-------eCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           62 DVNSSS--PQPVMSYDQH---------------TNNVM-AVGFQ-------CDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        62 d~~~~~--~~~~~~~~~~---------------~~~v~-~~~~~-------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      +.....  ......+-+.               -.... .+...       +.+.+.++-...++|+.++... ......
T Consensus       338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~Tia  416 (496)
T 3kya_A          338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYA  416 (496)
T ss_dssp             EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEE
T ss_pred             ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEe
Confidence            653221  1000111110               11233 33443       4577788888889999999543 322111


Q ss_pred             cc----------------c--------CcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcceee
Q 042260          117 ES----------------R--------AAVNTVVLHPN-QTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       117 ~~----------------~--------~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      ..                .        .....+++.++ +++.++=..+..||.++++..-++..
T Consensus       417 G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          417 GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             cccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence            10                0        23678999996 77666667788999999998776644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.20  E-value=2.1  Score=32.38  Aligned_cols=134  Identities=10%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             CCcEEEEEC--CCCceeEEeec------CC-CCeEEEEE--cCC-Cc--eEEEecCCcEEEEEcCC---CC--CCCeEEe
Q 042260           14 DKTIKFWEA--KSGRCYRTIQY------PD-SQVNRLEI--TPN-KH--YLAAAGNPHIRLFDVNS---SS--PQPVMSY   74 (174)
Q Consensus        14 D~~v~vwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~--~~~~~~d~~i~i~d~~~---~~--~~~~~~~   74 (174)
                      +.+|.+|++  .+++ +..+..      .. ..+..+++  ++. +.  .++...++.+..|++..   +.  .+.+..+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999965  4443 444311      11 44666777  663 43  34555677888888732   21  1223333


Q ss_pred             ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-----CCeeEEeeccc---CcEEEEEE--ccCCC-EEEEee-CCCc
Q 042260           75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-----APVCQMEYESR---AAVNTVVL--HPNQT-ELISGD-QNGN  142 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~---~~v~~~~~--~~~~~-~l~s~~-~d~~  142 (174)
                      .. ..++..+...+....|+.+-++.-|-.+|.+     +...+..+...   ..+..+++  .+++. +|++.+ .+.+
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            33 3678888888888888989888666555644     23344333222   45777777  45555 666666 3668


Q ss_pred             EEEEeCC
Q 042260          143 IRVWDLT  149 (174)
Q Consensus       143 i~iwd~~  149 (174)
                      ..+||.+
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999997

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.92  E-value=2.2  Score=31.87  Aligned_cols=100  Identities=10%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEEEEeeC---CCE-EEEecCC-----CcEE
Q 042260           36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAVGFQCD---GNW-MYSGSED-----GTVK  103 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~-l~t~~~d-----g~v~  103 (174)
                      .....++|.|++.++++-..+.|++++  .+....+....   ........++++++   +.. .++-...     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            346789999999888877677888887  33222221111   12356889999987   444 4443322     5677


Q ss_pred             EEeCCCC-----eeEEe-ecc----cCcEEEEEEccCCCEEEEe
Q 042260          104 IWDLRAP-----VCQME-YES----RAAVNTVVLHPNQTELISG  137 (174)
Q Consensus       104 iwd~~~~-----~~~~~-~~~----~~~v~~~~~~~~~~~l~s~  137 (174)
                      .++....     +.+.. +..    ......++|.|++...++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            7776532     11111 221    1234789999999876664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.64  E-value=2.3  Score=31.38  Aligned_cols=140  Identities=9%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             cEEEEEeeCC-CcEEEEECCC-CceeEEeec-C-CCCe-EEEEEcCCCceEE-Eec-C---------CcEEEEEcCCCCC
Q 042260            5 SVILATASYD-KTIKFWEAKS-GRCYRTIQY-P-DSQV-NRLEITPNKHYLA-AAG-N---------PHIRLFDVNSSSP   68 (174)
Q Consensus         5 ~~~l~s~s~D-~~v~vwd~~~-~~~~~~~~~-~-~~~v-~~~~~~~~~~~~~-~~~-d---------~~i~i~d~~~~~~   68 (174)
                      +.+++.||.+ ..+..||..+ ......+.. + .... .+++.. ++.+++ ++. +         ..+.+||..+.++
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            4566666654 4588888864 122222221 1 1111 122222 344443 333 1         3478889877654


Q ss_pred             CCeEEee-cCCCCEEEEEEeeCCCEEEEecCC---------------------------------------CcEEEEeCC
Q 042260           69 QPVMSYD-QHTNNVMAVGFQCDGNWMYSGSED---------------------------------------GTVKIWDLR  108 (174)
Q Consensus        69 ~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d---------------------------------------g~v~iwd~~  108 (174)
                      ..+.... ..+.....+.  .+++.++.|+.+                                       ..+.++|+.
T Consensus        99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            4333222 2222222222  567777888754                                       478899988


Q ss_pred             CCeeEEeeccc--CcE-EEEEEccCCCEEEEeeC------CCcEEEEeC
Q 042260          109 APVCQMEYESR--AAV-NTVVLHPNQTELISGDQ------NGNIRVWDL  148 (174)
Q Consensus       109 ~~~~~~~~~~~--~~v-~~~~~~~~~~~l~s~~~------d~~i~iwd~  148 (174)
                      +......-...  ... .+++. .++..++.|+.      ...+..||+
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            76544322211  111 22222 25566666654      235777887

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=92.59  E-value=2.3  Score=31.31  Aligned_cols=143  Identities=10%  Similarity=0.047  Sum_probs=78.7

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeE-EeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYR-TIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..+-...+.|..++..++.... .+...-....++++.+. +.+..+ ...+.|.++++.....  ............
T Consensus        48 ~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~~~~P~  125 (318)
T 3sov_A           48 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPR  125 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEE
T ss_pred             EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEeCCCCCcc
Confidence            334444444555555554432111 11111123456777764 333333 3456788888865322  222223445678


Q ss_pred             EEEEeeCCCE-EEEe-cCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           83 AVGFQCDGNW-MYSG-SEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        83 ~~~~~~~~~~-l~t~-~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      .+++.+.+.. +++- +..+.|...++.......... .-...+.++++|++..|. +-+..+.|..+|+..
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            8999875444 4444 235788888876432222122 224568999998666655 445577899999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.37  E-value=3.8  Score=33.33  Aligned_cols=164  Identities=7%  Similarity=0.010  Sum_probs=90.6

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +.+..+-...+.|.+.++.......-+...-....+++++|. +.++.+- + .+.|...++.......+  . ......
T Consensus        92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~-~~~~~P  168 (628)
T 4a0p_A           92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--V-PNVGRA  168 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E-CSCSSE
T ss_pred             CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--E-CCCCCc
Confidence            344555555666777776543322222222334678999985 4444443 2 34566666654432222  2 244667


Q ss_pred             EEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-c
Q 042260           82 MAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-L  159 (174)
Q Consensus        82 ~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  159 (174)
                      ..++++++++ ..++-...+.|...|+...........-.....+++.. +....+-..++.|...|..++.....+. .
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~  247 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGH  247 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence            8899998655 45555667889999986533222222223456777754 4444455557889999987665433221 1


Q ss_pred             ccceeEEEEEeec
Q 042260          160 QYGLRTFLFYHQD  172 (174)
Q Consensus       160 ~~~~~~~~~~~~~  172 (174)
                      ...+.....||+.
T Consensus       248 ~~~p~~i~v~~~~  260 (628)
T 4a0p_A          248 LDYVMDILVFHSS  260 (628)
T ss_dssp             CCSCCEEEEECGG
T ss_pred             CCCcceeeeeeec
Confidence            1234455667753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.30  E-value=3.8  Score=33.20  Aligned_cols=145  Identities=10%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             EEEEECCC----Cc-eeEEeecCCCCeEEEEEcCCCceEEEec--CCcEEEEEcCC------CCC----CCeEEeecCCC
Q 042260           17 IKFWEAKS----GR-CYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNS------SSP----QPVMSYDQHTN   79 (174)
Q Consensus        17 v~vwd~~~----~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~------~~~----~~~~~~~~~~~   79 (174)
                      +++-|.+.    +. ..+.+..+ ....++.++|+|+++++++  +..+.++|++.      .+.    ..+.....-..
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             eeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            66777654    22 23333333 3466788999999887764  67899999862      111    11111112234


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC----------eeEEeecccCcEEEEEE------ccCCCEEEEe---eCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP----------VCQMEYESRAAVNTVVL------HPNQTELISG---DQN  140 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~s~---~~d  140 (174)
                      ..+..+|.++|+...|---|..|--|++...          .++..+.-+..+--+.-      .|+++.|++.   |.|
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skd  458 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKD  458 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTT
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccc
Confidence            5778899999955555568999999998642          23333333444444433      4677888775   445


Q ss_pred             CcE----------EEEeCCCC--cceeecCcccc
Q 042260          141 GNI----------RVWDLTAN--SCSCELGLQYG  162 (174)
Q Consensus       141 ~~i----------~iwd~~~~--~~~~~~~~~~~  162 (174)
                      +.+          .|.||.-.  ..+.+.+.-..
T Consensus       459 rfl~vGpl~pen~QlidIsGdkM~lv~D~P~~~E  492 (638)
T 3sbq_A          459 RFLPVGPLHPENDQLIDISGDEMKLVHDGPTFAE  492 (638)
T ss_dssp             SSCCCSSSCCEEEEEEECSSSSCEEEEEEEESSC
T ss_pred             cCcCCCCCCCCcceeEecCCCceEEEecCCCCCC
Confidence            543          77888743  34455443333

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.15  E-value=2.8  Score=31.34  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=60.0

Q ss_pred             CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEEEEeeC----CCEEEEecC---C----Cc
Q 042260           36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAVGFQCD----GNWMYSGSE---D----GT  101 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~~l~t~~~---d----g~  101 (174)
                      .....++|.|++.++++-.++.|+++|. .+. ..+....   ........++++++    +.+.++-+.   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4567899999998888776788887763 332 2222111   12356889999986    444444332   3    56


Q ss_pred             EEEEeCCCC-------eeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260          102 VKIWDLRAP-------VCQME-YE--SRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus       102 v~iwd~~~~-------~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      |..|+....       +.+.. +.  .......++|.|++...++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            777776543       11111 11  112357899999998777643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.18  E-value=3.2  Score=30.06  Aligned_cols=144  Identities=13%  Similarity=0.082  Sum_probs=72.4

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEE-eecCCCCeEEEEEcCCCceEEEec-----CC-------cEEEEEcCCCCCCCeE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRT-IQYPDSQVNRLEITPNKHYLAAAG-----NP-------HIRLFDVNSSSPQPVM   72 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-----d~-------~i~i~d~~~~~~~~~~   72 (174)
                      .+++-|+.  .+..||..+++-... ...+...........++.+++.++     ++       .+..||..+.++..+.
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            45666664  389999988765431 111122222222333455544443     11       1667787766543332


Q ss_pred             EeecCCCCEEEEEEeeCCCEEEEecCC-------CcEEEEeCCCCeeEEeecccCc-E-EEEEEccCCCEEEEeeCC---
Q 042260           73 SYDQHTNNVMAVGFQCDGNWMYSGSED-------GTVKIWDLRAPVCQMEYESRAA-V-NTVVLHPNQTELISGDQN---  140 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~s~~~d---  140 (174)
                      .+...+.....+.+  +++.++.|+.+       ..+.++|+.+......-..+.+ . .+++. .++..++.|+.+   
T Consensus        95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred             CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence            22222222222222  56777777653       3578888887654432221111 1 11222 356666666642   


Q ss_pred             ---CcEEEEeCCCCcce
Q 042260          141 ---GNIRVWDLTANSCS  154 (174)
Q Consensus       141 ---~~i~iwd~~~~~~~  154 (174)
                         ..+..||+.+.+..
T Consensus       172 ~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             CBCCCEEEEETTTTEEE
T ss_pred             CccceEEEEcCCCCEEE
Confidence               35899999887644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.90  E-value=0.53  Score=40.31  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+.+++..++..++++-+.|+++|+|++.++.|+.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            5788888888999999999999999999999988653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=89.87  E-value=4.9  Score=30.07  Aligned_cols=96  Identities=9%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCcEEEEECC---CCceeEEeecC-------------CCCeEEEEEcCCCceEE-EecC-CcEEEEEcCCCCCCCeEEe-
Q 042260           14 DKTIKFWEAK---SGRCYRTIQYP-------------DSQVNRLEITPNKHYLA-AAGN-PHIRLFDVNSSSPQPVMSY-   74 (174)
Q Consensus        14 D~~v~vwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~-~~~d-~~i~i~d~~~~~~~~~~~~-   74 (174)
                      +..|..||+.   +++.+......             .....+++..++|...+ .+.. +.|...+..  ... ...+ 
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~-~~~~~  175 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKT-VSTFA  175 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--SCC-EEEEE
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCE-Eeeee
Confidence            6779999998   78776555421             12378899999877555 3434 433333332  211 1111 


Q ss_pred             -e----cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260           75 -D----QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC  112 (174)
Q Consensus        75 -~----~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~  112 (174)
                       .    ........+++.|+++.|+....+|.+.-+|++.+..
T Consensus       176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~  218 (334)
T 2p9w_A          176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA  218 (334)
T ss_dssp             ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred             ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence             1    1123366899999998877776699999999986543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.78  E-value=0.77  Score=40.08  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260          121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL  157 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  157 (174)
                      .+.+++..++..++++-+.|+++|+||+.++.|+.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            4566677788899999999999999999999998663

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.65  E-value=5  Score=29.85  Aligned_cols=91  Identities=14%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCce--eEEee---cCCCCeEEEEEcCC----CceEEE-ecC-----CcEEEEEcCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRC--YRTIQ---YPDSQVNRLEITPN----KHYLAA-AGN-----PHIRLFDVNSSSP   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~~~~~-~~d-----~~i~i~d~~~~~~   68 (174)
                      ++.++++ ..++.|++++  +++.  +..+.   ........++++|+    +.+.++ ...     ..|..++......
T Consensus        41 dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~  117 (352)
T 2ism_A           41 DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERG  117 (352)
T ss_dssp             TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCE
T ss_pred             CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCc
Confidence            4555544 4568888888  3332  22221   12345789999997    344333 222     4566677653311


Q ss_pred             ---CCeEE-ee---cCCCCEEEEEEeeCCCEEEEec
Q 042260           69 ---QPVMS-YD---QHTNNVMAVGFQCDGNWMYSGS   97 (174)
Q Consensus        69 ---~~~~~-~~---~~~~~v~~~~~~~~~~~l~t~~   97 (174)
                         ..+.. +.   ........++|.++|.+.++.+
T Consensus       118 ~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          118 VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence               11111 22   1111235789999998777754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.39  E-value=4.3  Score=28.73  Aligned_cols=133  Identities=11%  Similarity=-0.008  Sum_probs=71.4

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc--e----eEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeE----E
Q 042260            5 SVILATASYDKTIKFWEAKSGR--C----YRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM----S   73 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~--~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----~   73 (174)
                      +.+|.+...| +++.=....+.  .    ...+-. .=..+..++|+|++.+.+. .++.+.-.+..+.....-.    .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence            4467777777 54433332222  1    111111 0135779999998887666 5664433333221111110    0


Q ss_pred             e--ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE------Eee--cccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260           74 Y--DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ------MEY--ESRAAVNTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus        74 ~--~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~------~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i  143 (174)
                      .  .+.. ...++.|.++|.+.+.  .||.|.-++-.+....      ..+  ..-..+..+.+.|++.+.+..  |+.+
T Consensus        82 IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           82 IGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            0  0111 1467788889987776  5688887775321110      011  112467999999999977766  7764


Q ss_pred             E
Q 042260          144 R  144 (174)
Q Consensus       144 ~  144 (174)
                      .
T Consensus       157 y  157 (236)
T 1tl2_A          157 Y  157 (236)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.16  E-value=0.64  Score=34.93  Aligned_cols=63  Identities=10%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             cCCCcEEEEeCCCCeeEEeeccc-----CcEEE---EEE-c----cCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           97 SEDGTVKIWDLRAPVCQMEYESR-----AAVNT---VVL-H----PNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        97 ~~dg~v~iwd~~~~~~~~~~~~~-----~~v~~---~~~-~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      ..||.+..+|..++.....+..+     .++..   ..+ .    -.+..+++|+.+|.+.-.|+++++..++++.
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            68999999998876544333221     22221   000 0    0456788999999999999999998887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.01  E-value=10  Score=29.39  Aligned_cols=103  Identities=16%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             CCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeec------CCCCEEEEEEeeC----CCEEEEecC------
Q 042260           36 SQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQ------HTNNVMAVGFQCD----GNWMYSGSE------   98 (174)
Q Consensus        36 ~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~----~~~l~t~~~------   98 (174)
                      ...+.++|.|++.++++-..+ .|++++..++....+..+..      .......++++|+    +.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            356799999999988877654 57777654443222222211      2356789999984    444444332      


Q ss_pred             ------CCcEEEEeCCC-------CeeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260           99 ------DGTVKIWDLRA-------PVCQME-YE--SRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        99 ------dg~v~iwd~~~-------~~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~  138 (174)
                            ...|.-++...       .+.+.. +.  .......++|.|++.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  12444444321       111221 11  124578999999998766644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.61  E-value=11  Score=28.31  Aligned_cols=109  Identities=9%  Similarity=0.043  Sum_probs=62.5

Q ss_pred             EeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecCCCCEEEEEEeeC----CCEEEEe--cC
Q 042260           30 TIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQHTNNVMAVGFQCD----GNWMYSG--SE   98 (174)
Q Consensus        30 ~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~----~~~l~t~--~~   98 (174)
                      .+...-...+.++|.|++.++++-. .+.|++++...+....+...    .........++++|+    +.+.++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3333334578999999999888876 77788877544432222111    122456889999884    4443332  23


Q ss_pred             CCcEEEEeCCC----------CeeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260           99 DGTVKIWDLRA----------PVCQME-YE--SRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus        99 dg~v~iwd~~~----------~~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      ++.|.-|....          .+.+.. +.  .......++|.|++.+.++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            44555454432          122221 21  123456799999998777643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=84.25  E-value=11  Score=28.09  Aligned_cols=130  Identities=12%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCc-eeEEee---cCCCCeEEEEEcCC----CceEEEec----C----CcEEEEEcCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGR-CYRTIQ---YPDSQVNRLEITPN----KHYLAAAG----N----PHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~----d----~~i~i~d~~~~~   67 (174)
                      ++.++++ ..++.|+++| .+++ .+..+.   ........++++|+    +.+.++-.    +    ..|..++.....
T Consensus        39 dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~  116 (354)
T 3a9g_A           39 GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGST  116 (354)
T ss_dssp             TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSS
T ss_pred             CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCC
Confidence            4555544 4558888887 3454 222211   12345789999996    44444322    2    446666665431


Q ss_pred             -----CCCeEE-eec-CCCCEEEEEEeeCCCEEEEecCC-------------CcEEEEeCCCC---------eeEEeecc
Q 042260           68 -----PQPVMS-YDQ-HTNNVMAVGFQCDGNWMYSGSED-------------GTVKIWDLRAP---------VCQMEYES  118 (174)
Q Consensus        68 -----~~~~~~-~~~-~~~~v~~~~~~~~~~~l~t~~~d-------------g~v~iwd~~~~---------~~~~~~~~  118 (174)
                           .+.+.. +.. .......++|.++|++.++.+..             |.|.-.|....         ..+....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~  196 (354)
T 3a9g_A          117 FKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH  196 (354)
T ss_dssp             CCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC
T ss_pred             cCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc
Confidence                 111111 211 11124568899999987775432             34544444321         11222222


Q ss_pred             cCcEEEEEEcc-CCCEEEE
Q 042260          119 RAAVNTVVLHP-NQTELIS  136 (174)
Q Consensus       119 ~~~v~~~~~~~-~~~~l~s  136 (174)
                       .....++|+| ++...++
T Consensus       197 -rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          197 -RNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             -SCCCEEEECTTTCCEEEE
T ss_pred             -CCcceEEEeCCCCCEEEE
Confidence             3357899999 5665444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.72  E-value=2.7  Score=34.06  Aligned_cols=74  Identities=11%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CCCEEEEEEeeCCCEEEEe-cCCCcEEEEeCCCC-------------eeEEeecccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260           78 TNNVMAVGFQCDGNWMYSG-SEDGTVKIWDLRAP-------------VCQMEYESRAAVNTVVLHPNQTELISGDQNGNI  143 (174)
Q Consensus        78 ~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i  143 (174)
                      ......+..+|+|++++.+ -.+.++.++|+++-             ......+..-...-.+|.++|+-..+---|.+|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            3556678889999986665 45789999998741             112233445567888999998555555579999


Q ss_pred             EEEeCCCC
Q 042260          144 RVWDLTAN  151 (174)
Q Consensus       144 ~iwd~~~~  151 (174)
                      --||+...
T Consensus       402 vkWni~~a  409 (638)
T 3sbq_A          402 VKWNMEEA  409 (638)
T ss_dssp             EEEEHHHH
T ss_pred             EEEeccHH
Confidence            99999865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.62  E-value=12  Score=28.06  Aligned_cols=133  Identities=16%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCcee--EEe----ecCCCCeEEEEEcCC----CceEEE-e--cCCcEEEEEcCCC---
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCY--RTI----QYPDSQVNRLEITPN----KHYLAA-A--GNPHIRLFDVNSS---   66 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~----~~~~~~-~--~d~~i~i~d~~~~---   66 (174)
                      .++.++++-...|.|++++..+++..  ..+    .........++++|+    +.+.++ +  .+..|.-|.+...   
T Consensus        41 pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~  120 (347)
T 3das_A           41 PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPS  120 (347)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCT
T ss_pred             CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcc
Confidence            35666766666899999986655432  111    112445789999984    444332 2  2334544555431   


Q ss_pred             --C---CCCeEE-eec-CCCCEEEEEEeeCCCEEEEecC-------------CCcEEEEeCCCC---------eeEEeec
Q 042260           67 --S---PQPVMS-YDQ-HTNNVMAVGFQCDGNWMYSGSE-------------DGTVKIWDLRAP---------VCQMEYE  117 (174)
Q Consensus        67 --~---~~~~~~-~~~-~~~~v~~~~~~~~~~~l~t~~~-------------dg~v~iwd~~~~---------~~~~~~~  117 (174)
                        .   .+.+.. +.. .......+.|.++|++.++.+.             .|.|.=.+....         ..+....
T Consensus       121 ~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G  200 (347)
T 3das_A          121 GEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYG  200 (347)
T ss_dssp             TCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBC
T ss_pred             cccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeC
Confidence              1   111111 111 1112456889999998887542             233333343321         1122223


Q ss_pred             ccCcEEEEEEccCCCEEEE
Q 042260          118 SRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus       118 ~~~~v~~~~~~~~~~~l~s  136 (174)
                      + .....++|+|++...++
T Consensus       201 ~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          201 H-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             C-SBCCEEEECTTCCEEEE
T ss_pred             C-CCcceEEECCCCCEEEE
Confidence            3 34578899998765554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.05  E-value=1.1  Score=31.73  Aligned_cols=67  Identities=6%  Similarity=-0.086  Sum_probs=42.7

Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE--------EEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV--------NTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .++..++|+|+|.+.+.  .+|.+.--+..+......+.....|        ..+.|.|++.+.++  .||.|.-++--
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46779999998885544  6676655554432222111222223        78899999997777  66888877753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.43  E-value=13  Score=27.61  Aligned_cols=102  Identities=15%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             CeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEe----ecCCCCEEEEEEeeC----CCEEEEecC-------CC
Q 042260           37 QVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSY----DQHTNNVMAVGFQCD----GNWMYSGSE-------DG  100 (174)
Q Consensus        37 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~----~~~l~t~~~-------dg  100 (174)
                      ....++|.|++. ++++-..+.|++++........+...    .........++++|+    +.+.++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            467899999998 88877778888887432111111111    112345789999984    444444332       22


Q ss_pred             cEEEEeCCCC-------eeEEe-ec----ccCcEEEEEEccCCCEEEEee
Q 042260          101 TVKIWDLRAP-------VCQME-YE----SRAAVNTVVLHPNQTELISGD  138 (174)
Q Consensus       101 ~v~iwd~~~~-------~~~~~-~~----~~~~v~~~~~~~~~~~l~s~~  138 (174)
                      .|.-+++...       +.+.. +.    .......++|.|++.+.++.+
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            4555555321       11111 11    112246799999997666543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.87  E-value=2.4  Score=35.22  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260          122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus       122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      |.++.+  ++.++++-+.|.++|+||++++.|+.+..+
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            444444  478999999999999999999998866543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=81.51  E-value=17  Score=33.01  Aligned_cols=105  Identities=15%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC----CC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH----TN   79 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~   79 (174)
                      ..++||-- ...++.|||+++.+.+.++..++..+---..++.  .++-..+..+..|++.. ...|...+..|    ..
T Consensus        76 ~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~--~l~lVT~~aVyHW~~~~-~s~P~k~fdR~~~L~~~  151 (1630)
T 1xi4_A           76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGC  151 (1630)
T ss_pred             CcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCC--eeEEEcCCeEEEeccCC-CCccHHHHhcchhcccC
Confidence            34444443 3678999999988888777766543333333333  33334466799999964 33444444444    45


Q ss_pred             CEEEEEEeeCCCEEEEec-------CCCcEEEEeCCCCee
Q 042260           80 NVMAVGFQCDGNWMYSGS-------EDGTVKIWDLRAPVC  112 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~  112 (174)
                      +|..-..+++.++++-.+       -.|.+-+|+..+...
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s  191 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc
Confidence            666667777888765432       347888888876543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.71  E-value=3.6  Score=35.27  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY  116 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~  116 (174)
                      .+.+++..++..++++-+.|+.+|+|++.+..++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4566677778889999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query: 9   ATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSS 67
            + + D + K W+ + G C +T    +S +N +   PN +  A    +   RLFD+ +  
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 68  PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVV 126
                S+D     + +V F   G  + +G +D    +WD                V+ + 
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319

Query: 127 LHPNQTELISGDQNGNIRVWD 147
           +  +   + +G  +  +++W+
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 6e-15
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 13  YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPV 71
            D T   W+ ++G+   T       V  L + P+     +   +   +L+DV        
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCR 219

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI---WDLRAPVCQMEYESRAAVNTVVLH 128
            ++  H +++ A+ F  +GN   +GS+D T ++      +  +          + +V   
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCEL 157
            +   L++G  + N  VWD      +  L
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 3e-14
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 7   ILATASYDKTIKF--WEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
             AT S D T +     A       +       +  +  + +   L A   + +  ++D 
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
                        H N V  +G   DG  + +GS D  +KIW+
Sbjct: 300 --LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 6e-08
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 45/194 (23%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
           +L +AS D  +  W++ +      I    S V      P+ +Y+A  G  +I       +
Sbjct: 69  LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128

Query: 67  --------------------------------------------SPQPVMSYDQHTNNVM 82
                                                       + Q   ++  HT +VM
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188

Query: 83  AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNG 141
           ++    D     SG+ D + K+WD+R  +C+  +    + +N +   PN     +G  + 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 142 NIRVWDLTANSCSC 155
             R++DL A+    
Sbjct: 249 TCRLFDLRADQELM 262

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 59  RLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
            +  V     +   +   H   + A+ +  D   + S S+DG + IWD            
Sbjct: 36  NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 95

Query: 119 R-AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155
           R + V T    P+   +  G  +    +++L     + 
Sbjct: 96  RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
           ++A+ S D+T++ W   +  C   ++     V  +   P   Y + +             
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 67  SP-------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
            P                     +M+   H N V  V F   G ++ S ++D T+++WD 
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276

Query: 108 RAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
           +   C     +    V ++  H     +++G  +  ++VW+
Sbjct: 277 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 4e-18
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 3   QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLF 61
           +P   L + S DKTIK W+  +G C  T+   D+ V  +       ++ +   +  +R++
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 62  DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
           D    + + + + + H + V ++ F     ++ +GS D TVK+W+
Sbjct: 275 DYK--NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 4e-14
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNS 65
            + +AS DKTIK WE ++G C +T       V  +    +   +A+  N   +R++ V  
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-- 172

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCD--------------------GNWMYSGSEDGTVKIW 105
           ++ +      +H + V  + +  +                    G ++ SGS D T+K+W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

Query: 106 DLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           D+   +C M        V  V+ H     ++S   +  +RVWD     C   L
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 8e-13
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
           ++ +AS D TIK W+ ++G   RT++     V  +    +   LA+           +  
Sbjct: 31  VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI-KLWDFQ 89

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTV 125
             + + +   H +NV +V    +G+ + S S D T+K+W+++   C   +   R  V  V
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149

Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT 174
             + + T + S   +  +RVW +    C  EL     +   + +  + +
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 6e-08
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 68  PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVV 126
           P    +   H + V  V F    + M S SED T+K+WD      +   +    +V  + 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66

Query: 127 LHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172
              +   L S   +  I++WD     C   +       + +    +
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 112

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 2e-18
 Identities = 27/166 (16%), Positives = 65/166 (39%), Gaps = 25/166 (15%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYP-------DSQVNRLEITPNKHYLAAAGNPH-IR 59
           +A  S D+ ++ W++++G     +             V  +  T +   + +      ++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 60  LFDVNSSSPQ----------PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
           L+++ +++ +            ++Y  H + V++V    +  ++ SGS+D  V  WD ++
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 110 PVCQMEYE-------SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
               +  +       S A  N   L P      +G  +   R+W  
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 4e-12
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 7   ILATASYDKTIKFWEAKSGR------------CYRTIQYPDSQVNRLEITPNKHYLAAAG 54
            + + S D+++K W  ++              C  T       V  +  T N  Y+ +  
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 55  -NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG------FQCDGNWMYSGSEDGTVKIWDL 107
            +  +  +D  S    P++    H N+V++V          + N   +GS D   +IW  
Sbjct: 328 KDRGVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 108 R 108
           +
Sbjct: 386 K 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 9e-12
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 11  ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSP- 68
            S D+T++ W+ ++G+C  T+   D          +  Y+AA   +  +R++D  +    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 69  ----QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-------------V 111
                   S   H ++V +V F  DG  + SGS D +VK+W+L+                
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 112 CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
                  +  V +V    N   ++SG ++  +  WD  + +    L
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-06
 Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
            LAT + D+ I+ W+ ++ +    +Q  +  +  L+  P+      +G+    +   +  
Sbjct: 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLR 193

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-------- 118
           + Q  ++               DG ++ +GS D  V++WD          +S        
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 253

Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
           + +V +VV   +   ++SG  + ++++W+L
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 76  QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE------------------ 117
            HT+ V  V F  DG ++ +G  + T +++ +                            
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 118 -SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173
            S   + +V   P+   L +G ++  IR+WD+        L         L Y    
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-14
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 12/155 (7%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
            + + S D +I+ W+ ++G C  T+    S  + +E+  N   ++   +  ++++D+ + 
Sbjct: 189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTG 247

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE------SRA 120
                +       + +    Q + N++ + S+DGTVK+WDL+               S  
Sbjct: 248 QCLQTLQGPNKHQSAV-TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306

Query: 121 AVNTVVLHPNQTELISGDQNGN----IRVWDLTAN 151
            V  +     +     G +NG     + V D   +
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 4e-10
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
            + + S D T+K W A +G+C RT+      V   ++  N        +          +
Sbjct: 29  RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII-----SGSTDRTLKVWN 83

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
           +      +  + +             + SGS D T+++WD+    C        A     
Sbjct: 84  AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRC 142

Query: 127 LHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
           +  +   ++SG  +  ++VWD    +C   L
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-09
 Identities = 29/145 (20%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 11  ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP 70
            S D T++ W+ ++G+C   +    + V        +  ++ A +  ++++D  +     
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRC-VQYDGRRVVSGAYDFMVKVWDPET--ETC 169

Query: 71  VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPN 130
           + +   HTN V ++ F  DG  + SGS D ++++WD+    C        ++ + +    
Sbjct: 170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-ELK 226

Query: 131 QTELISGDQNGNIRVWDLTANSCSC 155
              L+SG+ +  +++WD+    C  
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQ 251

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 3e-09
 Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
           + + +YD  +K W+ ++  C  T+Q   +           H ++ + +  IR++DV +  
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET-- 206

Query: 68  PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTV 125
              + +   H +    +      N + SG+ D TVKIWD++    +  ++  ++      
Sbjct: 207 GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
            L  N+  +I+   +G +++WDL        L
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-07
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAV 122
                +       H ++V+    Q  GN + SGS+D T+K+W      C          V
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156
            +  +  N     S D+   +   +      +  
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY 94

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 2e-13
 Identities = 11/77 (14%), Positives = 31/77 (40%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ 131
                H + V+++ F   G W  S  +D  +  W         + +  ++V +  +  + 
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318

Query: 132 TELISGDQNGNIRVWDL 148
             +++G  +    V+++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 14  DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS---SPQP 70
           D  I     +  R   T+ + +  V  + I+    ++   G   ++++D++     SP  
Sbjct: 31  DALIGPGIPRHARQINTLNHGEV-VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVS 89

Query: 71  VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116
            +      N + +     DG  +  G E  T+ IWDL AP  +++ 
Sbjct: 90  QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 8/101 (7%), Positives = 23/101 (22%), Gaps = 44/101 (43%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
              +   D  +  W    G                                         
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS----------------------------------- 303

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
                    + +++V++     D  ++ +GS D    ++++
Sbjct: 304 ---------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 11/87 (12%), Positives = 31/87 (35%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ 131
           +     T+ + ++G+   G W+  G E   V++  +  P     +   + V ++      
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 132 TELISGDQNGNIRVWDLTANSCSCELG 158
              +S  ++  +  W     +   +  
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSK 304

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 7e-12
 Identities = 19/125 (15%), Positives = 48/125 (38%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
            + T + DK I+ +++ + +    +   D  V  L+       ++ + +  +R++D+   
Sbjct: 25  YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
               V      T   + +    +  ++ +GS D T+ +W L       ++        V 
Sbjct: 85  CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144

Query: 127 LHPNQ 131
             P +
Sbjct: 145 HTPEE 149

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
           H  +V+    Q + N++ +G++D  ++++D       ++       V  +        + 
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 136 SGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173
                                 G    +R         
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 6e-05
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 13  YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM 72
            D TI+ W+ ++G    T+Q   + V                           ++     
Sbjct: 221 MDTTIRIWDLENGELMYTLQGHTALVGL----LRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 73  SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR--APVCQMEYESRAAVNTVVLHPN 130
               HTN      F    N + SGS +    I++LR    V     +    + +V     
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

Query: 131 QTELISGDQNGNIRVWDL 148
            T + + +++G   +  L
Sbjct: 336 -TLVAAVEKDGQSFLEIL 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.1 bits (141), Expect = 2e-11
 Identities = 17/159 (10%), Positives = 38/159 (23%), Gaps = 16/159 (10%)

Query: 8   LATASYDKTIKFWEAKSGRCY-------RTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL 60
           L   SY       +                I       N  ++ P      A       +
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 61  FDVNSSSPQPVMSY------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM 114
           +  +S        Y      +                +     E G +  +D++      
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT- 311

Query: 115 EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
             E +  +  + L  ++  ++    +G I  + L     
Sbjct: 312 --EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 3e-06
 Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 7/107 (6%)

Query: 5   SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
              L       +    +    R    ++      +         Y   A     +  +DV
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP 110
            +          +  NN+  +    D   +    +DG +  + L  P
Sbjct: 306 KTRKVT------EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 4e-11
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 12  SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV 71
           S D+TIK W   +    RT+      +  L+         ++ N  IRL+D+   +   V
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN-TIRLWDIECGACLRV 213

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLH--- 128
           +   +     +    + D   + SG+ DG +K+WDL A +          + T+V H   
Sbjct: 214 LEGHEELVRCI----RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269

Query: 129 -----PNQTELISGDQNGNIRVWD 147
                 ++ +++S   +  I +WD
Sbjct: 270 VFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-10
 Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS- 65
           ++ + S D TI+ W+ + G C R ++  + ++ R     NK  ++ A +  I+++D+ + 
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 66  ------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
                 +    + +  +H+  V  + F  D   + S S D T+ IWD
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-08
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 3/152 (1%)

Query: 15  KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY 74
           ++I  W+  S       +        + +         + +    +   N+S+ + V + 
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174

Query: 75  DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL 134
           + H   +     Q     + SGS D T+++WD+    C    E    +   +   N+  +
Sbjct: 175 NGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-I 231

Query: 135 ISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166
           +SG  +G I+VWDL A            LRT 
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-08
 Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 43/187 (22%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVN--------------------------- 39
            + +   D TIK W+  +  C R +      V                            
Sbjct: 27  KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 86

Query: 40  ------------RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY-DQHTNNVMAVGF 86
                             N   +  + +  I ++D+ S +   +      H   V  V F
Sbjct: 87  MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 146

Query: 87  QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146
                   SG  D T+K+W+                    L      ++SG  +  IR+W
Sbjct: 147 DDKYIVSASG--DRTIKVWNTSTCEFVRTLNGH-KRGIACLQYRDRLVVSGSSDNTIRLW 203

Query: 147 DLTANSC 153
           D+   +C
Sbjct: 204 DIECGAC 210

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 69  QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE 117
           Q +    + +  V  + +  D   + SG  D T+KIWD     C+    
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.9 bits (138), Expect = 5e-11
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 38  VNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSG 96
           ++      ++  +A    N  + +++ + +    V    +H   V  V +  D N + + 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 97  SEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
             D    +W L+    +          A   V   PN+ +   G  +  I +      + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 154 SC 155
             
Sbjct: 130 WW 131

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 2e-09
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA---AVNTVVLHPNQTE 133
               +    +  D   +     +  V I++         +E +     V  V   P+   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 134 LISGDQNGNIRVWDLTANSCSC 155
           +++   + N  VW L   +   
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKP 87

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 4e-09
 Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 8/176 (4%)

Query: 7   ILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
            +A    +  +  +E    +      ++  + QV  ++  P+ + +   G + +  ++ +
Sbjct: 21  QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

Query: 64  NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-----PVCQMEYES 118
              + +P +   +       V +  +      GS    + I              ++   
Sbjct: 81  KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 140

Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDMT 174
           R+ V ++  HPN   L +G  +   R++                     F      
Sbjct: 141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 3e-08
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 9   ATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP 68
           A  S+D T+   +A       T+      +  +        +AA  +    LF  +S++ 
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG 276

Query: 69  QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLH 128
           +  +S+    +       +         + D         A    ++   + +V+ + + 
Sbjct: 277 K--LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 334

Query: 129 P----NQTELISGDQNGNIRVWDLTA 150
                  ++  +   +G + +WD+ +
Sbjct: 335 SGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 18/190 (9%), Positives = 45/190 (23%), Gaps = 24/190 (12%)

Query: 7   ILATASYDKTIKFWEA-----KSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLF 61
            + T   D+    W       K       I      V            + +    I  F
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 62  DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-- 119
           +  +             + V+++ +  +   + +GS D   +I+       +        
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 120 -----------------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162
                              V+ V    N + +     +  + + D         L  +  
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 163 LRTFLFYHQD 172
               + +  +
Sbjct: 245 PLLAVTFITE 254

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 14/104 (13%), Positives = 31/104 (29%)

Query: 55  NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM 114
            P    +       + +         V  V F  +G+ +   S D TV + D    +   
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237

Query: 115 EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158
              S       V    ++ L++   +    ++   + +     G
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 7e-09
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR--APVCQMEYESRAAVNTVVLHP 129
           +    H+ +V  + +  DG  + S S D T+KIW++        +   +R     + +  
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 130 NQTELISGDQNGNIRVWDL 148
            +  L+S   NG I   + 
Sbjct: 292 TKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 6e-07
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 37  QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSG 96
               L  TP    +       +    V S        Y +H++          G +  SG
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 97  SEDGTVKIWDLRAPVCQMEY 116
              G V+IWD       ++ 
Sbjct: 77  DVHGNVRIWDTTQTTHILKT 96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 42/101 (41%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
            +A+AS DKTIK W   + +  +TI                                   
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVG-------------------------------- 279

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
                            +G       + S S +G +   + 
Sbjct: 280 ----------TRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 81  VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQ 139
            + +G    G+ +   +   +V    + +      Y E           P+     SGD 
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 140 NGNIRVWDLTANSCSC 155
           +GN+R+WD T  +   
Sbjct: 79  HGNVRIWDTTQTTHIL 94

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 9e-09
 Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 3/101 (2%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
               +Y   +   + ++G                         A      +  FD+  ++
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNA 271

Query: 68  PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
               +      ++  +V    DG+ ++ G   G +  +D  
Sbjct: 272 SIKRV---PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 8e-07
 Identities = 10/158 (6%), Positives = 43/158 (27%), Gaps = 19/158 (12%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPD--SQVNRLEITPNKHYLAAAG--NPHIRLFDV 63
           +   +    +   + +     + I   D         + P      A    +  +   D+
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 64  NSSSP---QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV------------KIWDLR 108
            +        + + ++   ++       DG  +        +             ++D  
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 109 APVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146
               +  +E+   +  +    + ++L    ++ ++   
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 8/117 (6%)

Query: 47  KHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKI 104
           + Y+ A   P  + + D    +   V++        M       G   Y + ++  ++  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 105 WDLRA------PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155
            DL               E   ++    L P+   L   +    + +          
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 9/93 (9%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS----------EDGTVKIWDLRAPVCQME 115
           +    +++ D  T  +     +    + +S +              ++ +DL        
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275

Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
                +  +V +  + + +  G   G++  +D 
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-08
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV----VL 127
               +     +      D     +   D T+++WD+    C  ++             V+
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304

Query: 128 HPNQTELISGDQNGNIRVWDL 148
                 +IS   +G +  ++L
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-06
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 19  FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT 78
                        +     +  L    ++ +     +  IR++DV +S      + D+  
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 79  NNVMAVGFQCDGN-WMYSGSEDGTVKIWDL 107
                VG    GN  + S S DGT+  ++L
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 36  SQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQH-TNNVMAVGF--QCDG 90
           +    L   P  + +A     +  +R  D   S   PV+ +  H ++ V  V F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 91  NWMYSGSEDGTVKIWDLRAPVCQMEYE---------SRAAVNTVVLHPNQTELISGDQNG 141
            ++ SG E G V +W           E             ++ +        L    +  
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 142 NIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173
           +     ++ +S +    +    +     H   
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 1   MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEI----TPNKHYLAAAGNP 56
               S   AT   D TI+ W+  + +C +       Q+   ++    T N   ++ + + 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 57  HIRLFDV 63
            +  +++
Sbjct: 319 TLNFYEL 325

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 5e-08
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHP 129
            +         A   + + + + +GS D  + I+ ++ P  + +     +  VN ++   
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268

Query: 130 NQTELISGDQNGNIRVWD 147
             T L+S   +  I+ W+
Sbjct: 269 PST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 67  SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
             + + +   H   + A+      N + SGS DG +  W        M  +    + ++ 
Sbjct: 2   HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSS----SMHQDHSNLIVSLD 53

Query: 127 LHPNQT 132
               Q 
Sbjct: 54  NSKAQE 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 0.004
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 9   ATASYDKTIKFWE-AKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
           AT S D  I  +   +  +  + +      VN L        +++  +  I+ ++V
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.0 bits (115), Expect = 6e-08
 Identities = 12/120 (10%), Positives = 25/120 (20%), Gaps = 2/120 (1%)

Query: 43  ITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102
               +    A         D+ +        +   T                 G     +
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKDPNQIYGV-LNRL 274

Query: 103 KIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162
             +DL+                V       +L  G    ++ V++         + L  G
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 11/113 (9%), Positives = 29/113 (25%), Gaps = 7/113 (6%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAG--NPHIRLFDVN 64
           +   +Y   +   +  S   Y++   PD        + P+             I   D++
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 65  SSSPQ----PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ 113
           +              +   ++ +     DG  +Y+                 +
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 89  DGNWMYSGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRV 145
              +M   +    + + D+             +    T ++ P+     +  +  G+I  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 146 WDLTANSCSC 155
            DL     + 
Sbjct: 67  IDLDTCKNTF 76

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 43  ITPNKHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDG 100
           +     Y+     P+ + + DV S +                     D    Y   +  G
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 101 TVKIWDL-------RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
            +   DL        A +  +  E   ++ +  + P+  E+ +           
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 11/95 (11%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--------------RAAV 122
           H  ++ +V      ++  S S DG +K+WD +    +   +                   
Sbjct: 13  HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
                      + +   +G++  + +T    + ++
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 18/194 (9%), Positives = 47/194 (24%), Gaps = 47/194 (24%)

Query: 8   LATASYDKTIKFWEAKSGRCYRTIQ-------------YPDSQVNRLEITPNKHYLAAAG 54
             + S D  +K W+ K                      + D              +A   
Sbjct: 27  TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86

Query: 55  -NPHIRLFDVNSS--------SPQPVMSYDQHTNNVMAVGFQCDGN-----WMYSGSEDG 100
            +  +  + +               ++  D   ++  A+ +    +      + +    G
Sbjct: 87  FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 146

Query: 101 TVKIWDLRAPVCQMEYESR-------------------AAVNTVVLHPNQTELISGDQNG 141
           T  IW       +    +                        +V +      + +G  NG
Sbjct: 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNG 205

Query: 142 NIRVWDLTANSCSC 155
            +++ +L+      
Sbjct: 206 TVQISELSTLRPLY 219

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 29/171 (16%)

Query: 4   PSVILATASYDKTIK------FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-- 55
              ++AT   + T++           +     ++    + +  ++ +P    LA A +  
Sbjct: 194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 56  -------------PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102
                          I    V + S Q  +    H++ VM++ F   G  + S   DG +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 103 KIWDLRAPVCQMEYES-----RAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
           + WD++                   + + +  +   L      G   V  L
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 19/190 (10%), Positives = 50/190 (26%), Gaps = 39/190 (20%)

Query: 7   ILATASYDKTIKFWEAKSG------------------RCYRTIQYPDSQVNRLEITPNKH 48
            L       T   W+                          +   P      ++I+    
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 197

Query: 49  YLAAAGNPHIRLFD----VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV-- 102
                 N  +++ +        + +   S   ++N++ +V F   G+ +    +  +   
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 103 -KIWDLRAPVCQMEYES--------------RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
             +++                           + V ++  + +   L S   +G +R WD
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

Query: 148 LTANSCSCEL 157
           +        L
Sbjct: 318 VKTKERITTL 327

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 33/145 (22%)

Query: 4   PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP---------------NKH 48
              ++AT S+   + F+        + + +    +   ++                   H
Sbjct: 78  ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 137

Query: 49  YLAAAG-NPHIRLFDVNSSSPQP----------------VMSYDQHTNNVMAVGFQCDGN 91
            L A        ++  +  + +                 V S    +    +V     G 
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG- 196

Query: 92  WMYSGSEDGTVKIWDLRAPVCQMEY 116
            + +G  +GTV+I +L        +
Sbjct: 197 LIATGFNNGTVQISELSTLRPLYNF 221

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 1e-07
 Identities = 9/89 (10%), Positives = 28/89 (31%)

Query: 19  FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT 78
               +         +            N      + +  + ++++N  S  P++    H 
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 79  NNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
            + +      +   + S  +D  +K W++
Sbjct: 269 MSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 2e-07
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 72  MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA---AVNTVVLH 128
            S+  HT  V  V +  D   + +GS D +V +W++  P         A   +    V+ 
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

Query: 129 PNQTELISGDQNGNIRVWDLT 149
            N+T ++S  Q+ NI+ W++ 
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 1e-06
 Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELI 135
           H   + A+    DG  ++S   +G +  WD+   +    + +  A + T +   ++ +L 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 136 SGDQNGNIRVWDLTANSCSC 155
           +   + +++V     +    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDS 90

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 10/109 (9%), Positives = 30/109 (27%), Gaps = 1/109 (0%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTI-QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
            L +A  +  I  W+  +G   R       + +  ++ T        + + H+++     
Sbjct: 26  TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85

Query: 66  SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM 114
           S      +     ++            +   +    + I+         
Sbjct: 86  SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 134

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 4/71 (5%)

Query: 69  QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME----YESRAAVNT 124
           Q V       + +  +      + +   S DG++ ++        ++       +  +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 125 VVLHPNQTELI 135
                N    I
Sbjct: 62  CNFIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 9/71 (12%), Positives = 23/71 (32%)

Query: 77  HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS 136
               V ++ F     ++Y+   DG +  W+L+       +      + V +  +   L  
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCL 309

Query: 137 GDQNGNIRVWD 147
              +   +   
Sbjct: 310 ATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 5/42 (11%), Positives = 20/42 (47%)

Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162
            ++ + + P+++ L+    +G++ V+     + + +L     
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 18/171 (10%), Positives = 38/171 (22%), Gaps = 27/171 (15%)

Query: 20  WEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY--DQH 77
               + +   +             T +   +    N  ++ F +                
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193

Query: 78  TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV--------------- 122
                      +       S DG V +              R A                
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 123 -NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172
            N++   P    L +   +G I  W+L              ++ F  +++D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---------IKNFAKFNED 295

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 11/158 (6%)

Query: 7   ILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEITPN-KHYLAAAGNPHIRLFD 62
           +L   S+D ++  ++         +         +       N    +         L  
Sbjct: 25  LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84

Query: 63  VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
               SP      +   N  +    +   + + + S DG +++ D R     +        
Sbjct: 85  DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144

Query: 123 NTVVLHPNQ-------TELISGDQNGNIRVWDLTANSC 153
           N   +           + LI G  N  ++ + L     
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 12/132 (9%), Positives = 38/132 (28%), Gaps = 22/132 (16%)

Query: 44  TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--- 100
                 +       I   D++S   + + + +  T    A G++  G    +        
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263

Query: 101 -----------------TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI--SGDQNG 141
                             V + D +      ++E    ++++ +  ++  L+      + 
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 323

Query: 142 NIRVWDLTANSC 153
            + + D  +   
Sbjct: 324 TLYIHDAESGEE 335

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 7/77 (9%), Positives = 20/77 (25%), Gaps = 5/77 (6%)

Query: 34  PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWM 93
                  L +     +     +  + + D  +             + + ++    D   +
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDSINVSQDEKPL 314

Query: 94  Y--SGSEDGTVKIWDLR 108
                + D T+ I D  
Sbjct: 315 LYALSTGDKTLYIHDAE 331

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 90  GNWMY-SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
            N    +  + G + + D  +       ++  AV+   +  +   L+   ++  I + D
Sbjct: 31  PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 9/111 (8%)

Query: 49  YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
            +       I L D +S   + V   D     V        G ++     D  + + DL 
Sbjct: 35  SVTLRDAGQIALVDGDSK--KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 109 APVCQMEYE------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
           A       E      +R+  ++          I+G                
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 8e-05
 Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 11/131 (8%)

Query: 32  QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN 91
             P  Q+N  ++  N   +       I L D ++   +     D     V        G 
Sbjct: 19  DRPTQQMNDWDLE-NLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGR 74

Query: 92  WMYSGSEDGTVKIWDLRAPVCQMEYE------SRAAVNTVVLHPNQTELI-SGDQNGNIR 144
           +++    DG V + DL         E      +R+   + +        I          
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 145 VWDLTANSCSC 155
           + D        
Sbjct: 135 IMDGETLEPKK 145

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 90  GNWMY-SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
            N    +  + G + + D      +   ++  AV+   L  +   L    ++G + + DL
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 149 TANSCSCELGLQYGLRTF 166
                +    ++ G    
Sbjct: 91  WMKEPTTVAEIKIGSEAR 108

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 49  YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDL 107
           Y+A+  +  I ++++N      +         V  +    D  ++Y     +  V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 108 RAPVCQMEYESRAAVNTVVLH 128
                 + + + +A+   + H
Sbjct: 67  APDDGALTFAAESALPGSLTH 87

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 5e-04
 Identities = 8/80 (10%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 95  SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSC 153
           + SE   + + D+ +          +     V+ P+ T++ ++   + ++ + D   N+ 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 154 SCELGLQYGLRTFLFYHQDM 173
              +      +         
Sbjct: 67  IATVPAGSSPQGVAVSPDGK 86

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 3/87 (3%)

Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSS 67
            S    I   +  S +   TI    S      I+P+   +  A   +  + + D  +++
Sbjct: 7  ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMY 94
              +        V             
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTN 92

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/124 (8%), Positives = 26/124 (20%), Gaps = 21/124 (16%)

Query: 49  YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY----------SGSE 98
            L A        +   +     +        ++   G    G+              G  
Sbjct: 37  TLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGH--SGSDFALASTSFARSAKGKR 94

Query: 99  DGTVKIWDLRAPVCQ--------MEYESRAAVNTVVLHPNQTELISGDQN-GNIRVWDLT 149
              V+++D    +            +     V+ +    +   L+             + 
Sbjct: 95  TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154

Query: 150 ANSC 153
             S 
Sbjct: 155 GASD 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.79
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.59
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.59
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.49
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.41
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.16
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.06
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.02
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.97
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.93
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.65
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.34
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.34
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.09
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.65
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.06
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.96
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.11
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.04
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.51

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.8e-26  Score=167.70  Aligned_cols=170  Identities=22%  Similarity=0.318  Sum_probs=136.5

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCC--------------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSS--------------   67 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~--------------   67 (174)
                      +++.+|+||+.||+|++||+.+++.+..+..|...|.+++|+|++.+++++ .|+.+++|+.....              
T Consensus        65 ~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  144 (340)
T d1tbga_          65 TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG  144 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSS
T ss_pred             CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccc
Confidence            356789999999999999999999999999999999999999988766543 45556666532110              


Q ss_pred             -----------------------------------------------------------------------CCCeEEeec
Q 042260           68 -----------------------------------------------------------------------PQPVMSYDQ   76 (174)
Q Consensus        68 -----------------------------------------------------------------------~~~~~~~~~   76 (174)
                                                                                             ..+...+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence                                                                                   012233456


Q ss_pred             CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260           77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC  153 (174)
Q Consensus        77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (174)
                      |...+.+++|+|++++|++|+.|+.|++||++.......+   .+..+|.+++|+|+++.|++|+.||.|++||+.++.+
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE
Confidence            7888999999999999999999999999999988776655   3456799999999999999999999999999999999


Q ss_pred             eeecCcccceeEEEEEeec
Q 042260          154 SCELGLQYGLRTFLFYHQD  172 (174)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~  172 (174)
                      ...+..+...+.-+-++++
T Consensus       305 ~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         305 AGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEEECCCSSCEEEEEECTT
T ss_pred             EEEEcCCCCCEEEEEEeCC
Confidence            9888755555555555554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.9e-26  Score=168.18  Aligned_cols=144  Identities=19%  Similarity=0.397  Sum_probs=125.6

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ...++++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||++............+...+.
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence            3457899999999999999999999999999999999999999887665 578899999998764332233345667899


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      +++|++++++|++|+.||.|++||+++..+...+. |..+|.+++|+|+++.|++|+.||+|++||
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999988887775 578899999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.3e-24  Score=161.09  Aligned_cols=154  Identities=16%  Similarity=0.239  Sum_probs=129.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCcee--EEeecCCCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeEEeecC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      +++.+|++|+.|++|++||+.+++..  ..+..|..+|.+++|+|++.++++++   +..+++|++++++  ....+..|
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~--~~~~l~~h  145 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQ  145 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCC
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccc--cccccccc
Confidence            35778999999999999999887754  44667888999999999988776654   3458999998764  34456789


Q ss_pred             CCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260           78 TNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC  155 (174)
Q Consensus        78 ~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (174)
                      ...|.+++|+|+++ .+++|+.|+.|++||+++......+. +..+|.++.++|+++.+++++.|+.|++||++++....
T Consensus       146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccc
Confidence            99999999999887 48899999999999999988776664 57789999999999999999999999999999987776


Q ss_pred             ecC
Q 042260          156 ELG  158 (174)
Q Consensus       156 ~~~  158 (174)
                      .++
T Consensus       226 ~~~  228 (311)
T d1nr0a1         226 VFE  228 (311)
T ss_dssp             ECB
T ss_pred             ccc
Confidence            543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.9e-24  Score=160.21  Aligned_cols=154  Identities=15%  Similarity=0.294  Sum_probs=130.6

Q ss_pred             CcEEEEEeeC--CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCce-EE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            4 PSVILATASY--DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         4 ~~~~l~s~s~--D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++.+|++++.  ++.+++|++++++....+..|...|.+++|+|++.+ ++ ++.|+.|++||+++.  .....+..|..
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~--~~~~~~~~~~~  190 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTK  190 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc--ccccccccccc
Confidence            4567777775  566999999999998888888889999999998764 44 456889999999876  44556778999


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+.++.++|+++++++++.|+.+++||++.......+.        |...|.+++|+|+++.|++|+.||+|++||++++
T Consensus       191 ~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999999999999999999998876655442        3567999999999999999999999999999999


Q ss_pred             cceeecCc
Q 042260          152 SCSCELGL  159 (174)
Q Consensus       152 ~~~~~~~~  159 (174)
                      ++..+++.
T Consensus       271 ~~~~~l~~  278 (311)
T d1nr0a1         271 KVEKTIPV  278 (311)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEC
Confidence            98877643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2e-24  Score=163.10  Aligned_cols=150  Identities=12%  Similarity=0.195  Sum_probs=125.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      +++.+||+|+.|+.|++||..+++  .+..++.|..+|.+++|+|++.++++ +.|+.+++||+..+.......+..|..
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~   96 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR   96 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccc
Confidence            356789999999999999998775  56777889999999999999887765 468899999998775555666677889


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---Ee-e-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---ME-Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .+.+++|+|+++.|++|+.|+.+++|++......   .. . .+...|.+++|+|+++.|++|+.|++|++||+....
T Consensus        97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_          97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence            9999999999999999999999999998654322   11 1 346789999999999999999999999999987653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.7e-24  Score=156.00  Aligned_cols=142  Identities=21%  Similarity=0.491  Sum_probs=124.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--------------------c-eEEEecCCcEEEEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--------------------H-YLAAAGNPHIRLFD   62 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~-~~~~~~d~~i~i~d   62 (174)
                      ++.+|++++.|++|++|+..+++....+..+...+..+.++|.+                    . +++++.|+.+++||
T Consensus       154 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  233 (317)
T d1vyhc1         154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD  233 (317)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEE
Confidence            46689999999999999999999999888888889999887653                    2 34456788999999


Q ss_pred             cCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260           63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNG  141 (174)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~  141 (174)
                      ++++  .++..+..|...+.++++++++++|++|+.||.|++||+++.++...+. |..+|++++|+|+++.|++|+.||
T Consensus       234 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         234 VSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             TTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCCC--cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            9876  4566778899999999999999999999999999999999888777764 578899999999999999999999


Q ss_pred             cEEEEe
Q 042260          142 NIRVWD  147 (174)
Q Consensus       142 ~i~iwd  147 (174)
                      +|++||
T Consensus       312 ~i~iWd  317 (317)
T d1vyhc1         312 TVKVWE  317 (317)
T ss_dssp             EEEEEC
T ss_pred             eEEEeC
Confidence            999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.4e-25  Score=166.06  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=120.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCc---------------eeEEe---ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGR---------------CYRTI---QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS   66 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~---------------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~   66 (174)
                      +.++++++.|+++++||+....               .....   ..+...+.+++|+|++.+++++.|+.|++||+.++
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccc
Confidence            4678999999999999974221               01111   12334578899999986666678999999999876


Q ss_pred             CCCC----eEEeecCCCCEEEEEEeeCCCEEEEecCCCc---EEEEeCCCCeeEEee--------------cccCcEEEE
Q 042260           67 SPQP----VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT---VKIWDLRAPVCQMEY--------------ESRAAVNTV  125 (174)
Q Consensus        67 ~~~~----~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~---v~iwd~~~~~~~~~~--------------~~~~~v~~~  125 (174)
                      +...    ...+..|...|.+++|+|++++|++|+.|+.   |++||+++......+              .|...|+++
T Consensus       216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeee
Confidence            4221    1223468899999999999999999999874   999999887665544              356789999


Q ss_pred             EEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          126 VLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +|+|+++.|++|+.|++|++||++++++.+.++
T Consensus       296 ~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            999999999999999999999999999888765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.1e-23  Score=152.79  Aligned_cols=161  Identities=13%  Similarity=0.210  Sum_probs=139.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ++.++++++.|+.+++||+++++.......+...+.+++|++++..++. +.|+.+++||+++++  .+..+ .|...+.
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~--~~~~~-~~~~~i~  228 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIF  228 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce--eeccc-ccccceE
Confidence            4567899999999999999999998888888889999999998876654 568899999998763  33333 4788999


Q ss_pred             EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      +++|+++++++++|+.|+.+++||++.........+...|.+++|+|+++.|++|+.|+.|++||+..+.+..+..+...
T Consensus       229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  308 (337)
T d1gxra_         229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS  308 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCC
Confidence            99999999999999999999999999988777777888999999999999999999999999999999998888776655


Q ss_pred             eeEEE
Q 042260          163 LRTFL  167 (174)
Q Consensus       163 ~~~~~  167 (174)
                      +....
T Consensus       309 v~~~~  313 (337)
T d1gxra_         309 VLSCD  313 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.6e-23  Score=156.94  Aligned_cols=168  Identities=14%  Similarity=0.114  Sum_probs=130.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEE--eecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCC--eEEeecCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRT--IQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQP--VMSYDQHT   78 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~--~~~~~~~~   78 (174)
                      ++.+|++|+.|++|++||+++++....  +..+...|.++.|+|++..+++ +.++.+++|++.......  ......|.
T Consensus        62 ~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~  141 (371)
T d1k8kc_          62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  141 (371)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccc
Confidence            456899999999999999987765444  3456778999999999876654 578899999987654322  22244678


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe------------------eEEe-ecccCcEEEEEEccCCCEEEEeeC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV------------------CQME-YESRAAVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~------------------~~~~-~~~~~~v~~~~~~~~~~~l~s~~~  139 (174)
                      ..+.+++|+|++++|++|+.|+.+++||+....                  .... ..+...|.+++|+|+++.|++++.
T Consensus       142 ~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  221 (371)
T d1k8kc_         142 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  221 (371)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence            899999999999999999999999999975421                  1111 234567999999999999999999


Q ss_pred             CCcEEEEeCCCCcceeecCcccceeEEEEEee
Q 042260          140 NGNIRVWDLTANSCSCELGLQYGLRTFLFYHQ  171 (174)
Q Consensus       140 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (174)
                      |+.|++||++.+.+...+..+.....-+-+.+
T Consensus       222 d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~  253 (371)
T d1k8kc_         222 DSTVCLADADKKMAVATLASETLPLLAVTFIT  253 (371)
T ss_dssp             TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE
T ss_pred             CCcceEEeeecccceeeeecccccceeeeecC
Confidence            99999999999988887765555443333343

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.8e-23  Score=148.17  Aligned_cols=167  Identities=23%  Similarity=0.415  Sum_probs=141.9

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV   81 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v   81 (174)
                      +++.+|+|||.|++|++||+++++.+..+..|...|.++.++|++.+++.+ .+..+..|+.....  ....+..|...+
T Consensus        27 p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  104 (317)
T d1vyhc1          27 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNV  104 (317)
T ss_dssp             SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCCCCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc--cccccccccccc
Confidence            356789999999999999999999999999999999999999998887765 56678888886653  344456788999


Q ss_pred             EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      ..+.++++++.+++++.|+.+++||+++......+. +...+.+++++|+++.|++++.|+.|++||++......++...
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~  184 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH  184 (317)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             eeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC
Confidence            999999999999999999999999999887776664 5678999999999999999999999999999999988887655


Q ss_pred             cceeEEEEEee
Q 042260          161 YGLRTFLFYHQ  171 (174)
Q Consensus       161 ~~~~~~~~~~~  171 (174)
                      ......+.+++
T Consensus       185 ~~~i~~~~~~~  195 (317)
T d1vyhc1         185 RHVVECISWAP  195 (317)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCCceEEEEee
Confidence            55555555544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-22  Score=149.74  Aligned_cols=165  Identities=17%  Similarity=0.265  Sum_probs=137.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ++.+|++|+.|++|++||+...  +....+..+...+..+.|+|++.++++ +.++.+++||++++  ........|...
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~--~~~~~~~~~~~~  185 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDG  185 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSC
T ss_pred             CCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            5678999999999999998754  456667778888999999999887765 56788999999876  345556778999


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +.+++|++++..+++++.|+.+++||+++.+....+.+...|.+++|+|+++.+++|+.|+.|++||++.+.......+.
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  265 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE  265 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccc
Confidence            99999999999999999999999999999988888888899999999999999999999999999999988766544433


Q ss_pred             cceeEEEEEee
Q 042260          161 YGLRTFLFYHQ  171 (174)
Q Consensus       161 ~~~~~~~~~~~  171 (174)
                      ..+ .-+.++|
T Consensus       266 ~~i-~~v~~s~  275 (337)
T d1gxra_         266 SCV-LSLKFAY  275 (337)
T ss_dssp             SCE-EEEEECT
T ss_pred             ccc-ceEEECC
Confidence            333 3333444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.1e-23  Score=155.21  Aligned_cols=147  Identities=18%  Similarity=0.383  Sum_probs=119.7

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEee-------cCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ-------YPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP------   68 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~------   68 (174)
                      .++.+|++|+.|+.|++||.+++.....+.       .|...|.++.|+|++.++++ +.|+.+++||++....      
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence            356789999999999999999988766653       35668999999999887665 5688999999975432      


Q ss_pred             ----CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEE------ccCCCEEEEe
Q 042260           69 ----QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVL------HPNQTELISG  137 (174)
Q Consensus        69 ----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~------~~~~~~l~s~  137 (174)
                          ........|...+.+++|++++++|++|+.||.|++||+++.+++.++. |...|.++++      +|+++.|++|
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence                1233445688899999999999999999999999999999988887775 5678888875      5788999999


Q ss_pred             eCCCcEEEEeCC
Q 042260          138 DQNGNIRVWDLT  149 (174)
Q Consensus       138 ~~d~~i~iwd~~  149 (174)
                      +.||+|++||++
T Consensus       375 s~Dg~I~iW~~~  386 (388)
T d1erja_         375 SGDCKARIWKYK  386 (388)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEeee
Confidence            999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=4e-22  Score=145.31  Aligned_cols=152  Identities=16%  Similarity=0.261  Sum_probs=122.8

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe----------
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV----------   71 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----------   71 (174)
                      +++.+|+||+.|++|++||+++++.+..+. .|...|.+++|+|++.+++++.|+.+++|+.........          
T Consensus        22 ~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~  101 (299)
T d1nr0a2          22 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ  101 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccc
Confidence            356789999999999999999999888775 577889999999999999989999999999753321000          


Q ss_pred             ---------------------EEe-------ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE--EeecccCc
Q 042260           72 ---------------------MSY-------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--MEYESRAA  121 (174)
Q Consensus        72 ---------------------~~~-------~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~  121 (174)
                                           ..+       ......+.+++++++++++++|+.|+.+++||++.....  ....+..+
T Consensus       102 ~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  181 (299)
T d1nr0a2         102 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE  181 (299)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                 000       012245677888999999999999999999999876543  33456788


Q ss_pred             EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      |.+++|+|++..|++++.|+.|++||+.++...
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999876554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.1e-22  Score=148.20  Aligned_cols=146  Identities=19%  Similarity=0.359  Sum_probs=114.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeE-EeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC-CCeEEeecCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYR-TIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP-QPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~-~~~~~~~~~~~   79 (174)
                      +++.+|++|+.|+.|++||+++++... ....|...|.+++|+|++.++++ +.++.+++||+.++.. .....+..|..
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~  225 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  225 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            356689999999999999998877543 23356788999999998887665 5688999999976532 22334567889


Q ss_pred             CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe--e--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--Y--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.+++|+|++++|++|+.||.|++||+++......  .  .+...+.++.+ ++++.|++++.|++|++||+.
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999999999999999999999987543221  1  22345666655 567889999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.2e-22  Score=147.24  Aligned_cols=161  Identities=17%  Similarity=0.278  Sum_probs=117.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +.+|+||+.|++|++||+++++++..+..|...|.+++|+|++.+++++.|+.+++|+..............+.......
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  102 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI  102 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccccc
Confidence            45899999999999999999999999999999999999999887777788999999999765322211111222223334


Q ss_pred             EEeeCCCEEEEecCCCcEEEEeCCC-------------------------------------------------------
Q 042260           85 GFQCDGNWMYSGSEDGTVKIWDLRA-------------------------------------------------------  109 (174)
Q Consensus        85 ~~~~~~~~l~t~~~dg~v~iwd~~~-------------------------------------------------------  109 (174)
                      .+.++++.+++++.|+.|++||++.                                                       
T Consensus       103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~  182 (355)
T d1nexb2         103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT  182 (355)
T ss_dssp             EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred             ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccce
Confidence            4455566666666666666666543                                                       


Q ss_pred             --------CeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeE
Q 042260          110 --------PVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRT  165 (174)
Q Consensus       110 --------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  165 (174)
                              ........ ....+.++.++|+++.+++++.|+.|++||++++.+...+..+.....
T Consensus       183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~  247 (355)
T d1nexb2         183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG  247 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCC
T ss_pred             eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccc
Confidence                    22222221 335577889999999999999999999999999888877654444433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.9e-21  Score=144.96  Aligned_cols=157  Identities=23%  Similarity=0.363  Sum_probs=117.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcC------------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVN------------------   64 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~------------------   64 (174)
                      ++.+|++|+.|++|++||..+++.+.....|...|..+.+++++..++ ++.++.+++||.+                  
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            466899999999999999999988888887877788887777654433 3345556666553                  


Q ss_pred             ------------------------CCCCCCe-----EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee---
Q 042260           65 ------------------------SSSPQPV-----MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC---  112 (174)
Q Consensus        65 ------------------------~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---  112 (174)
                                              ++.....     .....|...|.+++|++++++|++|+.|+.|++||++....   
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence                                    2211000     01124677899999999999999999999999999875432   


Q ss_pred             ----------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260          113 ----------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       113 ----------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                                .....+...|.+++|+|+++.|++|+.||.|++||++++++...+...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence                      122245678999999999999999999999999999999988877543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.2e-21  Score=145.33  Aligned_cols=154  Identities=12%  Similarity=0.107  Sum_probs=123.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCcee--------EEeecCCCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeE
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCY--------RTIQYPDSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVM   72 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~   72 (174)
                      ++.+|+||+.||+|++||+..++..        ..+..+..+|.+++|++++..+++++   +..+++|++.++  ..+.
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~  153 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLG  153 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEE
T ss_pred             CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc--ccce
Confidence            4578999999999999998765432        22345677899999999988765432   556899999876  4456


Q ss_pred             EeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccC-CCEEEEeeCCCcEEEE
Q 042260           73 SYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPN-QTELISGDQNGNIRVW  146 (174)
Q Consensus        73 ~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iw  146 (174)
                      .+..|...+.+++|++++. .+++++.|+.+++||++..+.....    .+...|.+++|+|+ +..|++++.|+.|++|
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iw  233 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF  233 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeee
Confidence            6778999999999999876 4788999999999999876655443    23466999999996 5788999999999999


Q ss_pred             eCCCCcceeecCc
Q 042260          147 DLTANSCSCELGL  159 (174)
Q Consensus       147 d~~~~~~~~~~~~  159 (174)
                      |++++++...+..
T Consensus       234 d~~~~~~~~~l~~  246 (325)
T d1pgua1         234 DGKSGEFLKYIED  246 (325)
T ss_dssp             ETTTCCEEEECCB
T ss_pred             eeccccccccccc
Confidence            9999988877653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-21  Score=141.84  Aligned_cols=142  Identities=22%  Similarity=0.470  Sum_probs=114.5

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~   80 (174)
                      ++..+++|+.|++|++||++.++.+..+..|...+.++.++++ .+++++.|+.|++||....+.  ...+.   .|...
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~  262 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSA  262 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCE--EEEECSTTSCSSC
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC-EEEEEcCCCEEEEEecccccc--cccccccceeeec
Confidence            3457899999999999999999999999988888988888753 455566889999999977642  22232   34556


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec------ccCcEEEEEEccCCCEEEEeeCCCc----EEEEeCCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE------SRAAVNTVVLHPNQTELISGDQNGN----IRVWDLTA  150 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~d~~----i~iwd~~~  150 (174)
                      +.++.+  +++++++|+.||.|++||+++.+.+..+.      +...|.+++|+|++..|++|+.||+    |++||+..
T Consensus       263 ~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         263 VTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            666655  56899999999999999999887766552      3457999999999999999999885    99999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.6e-21  Score=146.05  Aligned_cols=131  Identities=17%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEee------cCCCCeEEEEEcCCCceEEEe-cCC---cEEEEEcCCCCCCCe-----
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQ------YPDSQVNRLEITPNKHYLAAA-GNP---HIRLFDVNSSSPQPV-----   71 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~-~d~---~i~i~d~~~~~~~~~-----   71 (174)
                      +|++|+.|++|++||+++++.+..+.      .|...|.+++|+|++.+|+++ .|+   .+++||+++++....     
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            78999999999999999998776554      467789999999999888766 444   389999987642111     


Q ss_pred             ------EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEE----EEEEccCCCEEEEe
Q 042260           72 ------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVN----TVVLHPNQTELISG  137 (174)
Q Consensus        72 ------~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~----~~~~~~~~~~l~s~  137 (174)
                            ..+.+|...|.+++|+|++++|+||+.|++|++||+++..++.++. |...|.    .++|.|++..++++
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence                  1224799999999999999999999999999999999998887764 333332    35566666555433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=7.6e-21  Score=141.02  Aligned_cols=148  Identities=14%  Similarity=0.215  Sum_probs=116.9

Q ss_pred             eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCce-E-EEecCCcEEEEEcCCCCCCC-eEEeecCCCCEEEEEEe
Q 042260           11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-L-AAAGNPHIRLFDVNSSSPQP-VMSYDQHTNNVMAVGFQ   87 (174)
Q Consensus        11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~-~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~   87 (174)
                      ++.|+.+++|+..+++++..+..|...|.+++|+|++.. + +++.|+.+++||.+..+... ......|...+.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            345788999999999999999989999999999998754 3 45578999999987653211 11234567789999999


Q ss_pred             eC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEc---cCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           88 CD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLH---PNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        88 ~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      |+ +.++++++.|+.|++||+++.....++. +..++..+.|+   |+++.|++++.|+.|++||++++++...+.
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            96 6899999999999999999988777764 33344333333   678899999999999999999998887654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=9.4e-21  Score=137.29  Aligned_cols=142  Identities=17%  Similarity=0.321  Sum_probs=108.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ..+++++..++.+++|++...+....... +...+.+++|+|++.+++++ .|+.+++||+.++... ...+..|...+.
T Consensus       131 ~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~  209 (287)
T d1pgua2         131 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKIN  209 (287)
T ss_dssp             SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEE
T ss_pred             cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc-cccccccccccc
Confidence            33444444456799999887666555543 56679999999998877654 6889999999765321 223567889999


Q ss_pred             EEEEeeC----------CCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260           83 AVGFQCD----------GNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL  148 (174)
Q Consensus        83 ~~~~~~~----------~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (174)
                      +++|+|.          +.++++|+.|+.|++||++.+. ....+ .|...|.+++|+|++ .+++++.|+.|++||+
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999864          5689999999999999997643 33333 467889999999976 5889999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.2e-20  Score=136.37  Aligned_cols=147  Identities=16%  Similarity=0.346  Sum_probs=118.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.+++++..|+.+++||+++++.+.....+...+..+.+++.+..++ ++.|+.+++||++++  .....+..|...+.+
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--ELMYTLQGHTALVGL  248 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC--CEEEEECCCSSCCCE
T ss_pred             cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc--ccccccccccccccc
Confidence            45788999999999999999999988888888899999999877655 457889999999876  456667889999999


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  156 (174)
                      +.++  ++++++|+.||.|++||+++.......++........+++++.++++| .|+.|++||++++++...
T Consensus       249 ~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         249 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             EEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             cccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            8885  679999999999999999987766555444333334556677766655 589999999999988754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.5e-19  Score=127.46  Aligned_cols=156  Identities=21%  Similarity=0.381  Sum_probs=115.4

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-------------
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP-------------   70 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-------------   70 (174)
                      ++.+|+||+.||+|+|||+++++++..++.|...|.+++|++ ..+++++.|+.+++|++..+....             
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  102 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-ceeeccccccccccccccccccccccccccccccccc
Confidence            466899999999999999999999999999999999998853 234455678899999986542100             


Q ss_pred             ----------------------------eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCc
Q 042260           71 ----------------------------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAA  121 (174)
Q Consensus        71 ----------------------------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~  121 (174)
                                                  ...+..|...+....+  ....+++++.|+.+++||+++.+....+. +...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~  180 (293)
T d1p22a2         103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  180 (293)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecCCCCcEEEEEcccccc
Confidence                                        0011223344444443  45678899999999999999888776664 3456


Q ss_pred             EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccccee
Q 042260          122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR  164 (174)
Q Consensus       122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  164 (174)
                      +..+.+  ++..+++++.|++|++||+++..+...........
T Consensus       181 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         181 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV  221 (293)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             cccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceee
Confidence            666665  45789999999999999999988877765444443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.6e-19  Score=131.57  Aligned_cols=155  Identities=12%  Similarity=0.128  Sum_probs=106.1

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeE---EeecCCCCeEEEEEcCCC-ceEE-EecCCcEEEEEcCCCCCCCeEE-----
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYR---TIQYPDSQVNRLEITPNK-HYLA-AAGNPHIRLFDVNSSSPQPVMS-----   73 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~~~-~~~d~~i~i~d~~~~~~~~~~~-----   73 (174)
                      ++.+|++||.|++|+|||++++....   ....|..+|.+++|+|++ .+++ ++.|+.+++|++..........     
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~  101 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN  101 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccc
Confidence            46689999999999999987654432   223578899999999864 4454 4578899999986542210000     


Q ss_pred             ------ee----------------------------------c--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe
Q 042260           74 ------YD----------------------------------Q--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV  111 (174)
Q Consensus        74 ------~~----------------------------------~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~  111 (174)
                            ..                                  .  .........+.+.+..+++++.|+.|++||++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         102 LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred             cccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCc
Confidence                  00                                  0  00112233445667788888889999999875321


Q ss_pred             e-------------------------------------EEee-------------------------cccCcEEEEEEcc
Q 042260          112 C-------------------------------------QMEY-------------------------ESRAAVNTVVLHP  129 (174)
Q Consensus       112 ~-------------------------------------~~~~-------------------------~~~~~v~~~~~~~  129 (174)
                      .                                     +..+                         .+...+++++|+|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp  261 (342)
T d1yfqa_         182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred             ccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC
Confidence            0                                     0000                         0122478999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          130 NQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +++.|++|+.||.|++||++++++..++.
T Consensus       262 ~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         262 RHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             TTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CccEEEEECCCCEEEEEECCCCcEEEEec
Confidence            99999999999999999999999888775

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.8e-19  Score=127.90  Aligned_cols=145  Identities=24%  Similarity=0.510  Sum_probs=115.1

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+++++.|+++++||.+.++.+..+..+...+....+++ ..+++++.|+.+++||++..  ..+..+..|...+.++.+
T Consensus       149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~~~d~~~~--~~~~~~~~~~~~v~~~~~  225 (342)
T d2ovrb2         149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-IHVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMEL  225 (342)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECS-SEEEEEETTSCEEEEETTTC--CEEEEECCCCSCEEEEEE
T ss_pred             eeeeecCCCeEEEeecccceeeEEEcCcccccccccCCC-CEEEEEeCCCeEEEeecccc--eeeeEecccccceeEEec
Confidence            578899999999999999999888888876666665542 23445567899999999876  445667788888888776


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      +  ++++++|+.|+.|++||+........+.    +...+.++.+  +++.+++|+.||+|++||++++++..++.
T Consensus       226 ~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         226 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             E--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             C--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            4  6799999999999999998876655543    2345666666  55789999999999999999998887753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.4e-18  Score=121.60  Aligned_cols=134  Identities=25%  Similarity=0.473  Sum_probs=106.1

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      .+++++.|+++++||.++++.+..+..+...+..+.+++. .+++++.|+.+++||+++.  ..+.....+...+..  +
T Consensus       150 ~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~--~  224 (293)
T d1p22a2         150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECG--ACLRVLEGHEELVRC--I  224 (293)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEE--E
T ss_pred             ccccccCCCceeeecCCCCcEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccc--eeeeeecccceeeee--c
Confidence            4678999999999999999999999888888888877643 4555668899999999876  445556667676654  4


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCC---------CeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRA---------PVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD  147 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  147 (174)
                      .+++.+|++|+.||.|++||++.         ..+...+ .|..+|.+++|+  ++.|++|+.||+|++||
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            56788999999999999999642         1233333 466789999885  56899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.5e-17  Score=117.56  Aligned_cols=128  Identities=12%  Similarity=0.244  Sum_probs=90.3

Q ss_pred             EcCCCceE-EEecC-CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cc
Q 042260           43 ITPNKHYL-AAAGN-PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ES  118 (174)
Q Consensus        43 ~~~~~~~~-~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~  118 (174)
                      +++++..+ +++.+ +.+++|++...+.. ......+...+.+++|++++.+|++|+.||.|++||+.........  .|
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVS-FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEE-EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeccCcceeeeccccceeeeeecccccee-eeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc
Confidence            34444443 44444 46999998654221 1112346788999999999999999999999999999987765432  45


Q ss_pred             cCcEEEEEEccCC----------CEEEEeeCCCcEEEEeCCCCc-ceeecC-cccceeEEEEEeec
Q 042260          119 RAAVNTVVLHPNQ----------TELISGDQNGNIRVWDLTANS-CSCELG-LQYGLRTFLFYHQD  172 (174)
Q Consensus       119 ~~~v~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~  172 (174)
                      ..+|.+++|+|.+          .++++|+.|++|++||++.+. +...+. +...+.. +.+|++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~-v~~~~~  269 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN-LLWETP  269 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEE-EEEEET
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEE-EEECCC
Confidence            6789999998754          579999999999999998744 444444 3444444 455554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=1.7e-17  Score=122.51  Aligned_cols=148  Identities=11%  Similarity=0.142  Sum_probs=118.0

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCC--cEEEEEcCCCCCCCeEEeecCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNP--HIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      +++++|+++ ++.|++||+++++..+.  .|...|.+++|+|+++.++. +.+.  .+++||+++++   ......|...
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~~~~   87 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGN   87 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---EEECCCCCCS
T ss_pred             CCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---EEEeeCCCce
Confidence            577788877 56899999998876653  47778999999999987764 4333  58999998764   3345678899


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEe----------eCCCcEEEEeCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISG----------DQNGNIRVWDLT  149 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~----------~~d~~i~iwd~~  149 (174)
                      +.+++|+|+++++++++.++.+++|++........+. +...+.+++|+|+++.|+.+          ..++.+++||+.
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             EEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence            9999999999999999999999999999877665554 45678899999999998854          344569999999


Q ss_pred             CCcceeec
Q 042260          150 ANSCSCEL  157 (174)
Q Consensus       150 ~~~~~~~~  157 (174)
                      .++...-.
T Consensus       168 ~~~~~~~~  175 (360)
T d1k32a3         168 GRKIFAAT  175 (360)
T ss_dssp             TTEEEECS
T ss_pred             cCceeeec
Confidence            87655433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=2.2e-16  Score=116.41  Aligned_cols=148  Identities=7%  Similarity=0.064  Sum_probs=118.6

Q ss_pred             CCcEEEEEeeCCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260            3 QPSVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN   79 (174)
Q Consensus         3 ~~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~   79 (174)
                      ++++.|++++.|.  .|++||.++++.. .+..+...+..++|+|++..++. +.++.+++|++.+++  ....+..|..
T Consensus        52 pDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  128 (360)
T d1k32a3          52 GDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--PTVIERSREA  128 (360)
T ss_dssp             SSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSS
T ss_pred             CCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc--eeeeeecccc
Confidence            3566777665543  7999999987655 45567788999999999987765 467789999998764  3445567888


Q ss_pred             CEEEEEEeeCCCEEEEe----------cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           80 NVMAVGFQCDGNWMYSG----------SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~----------~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      .+.+++|+|+|++|+.+          ..++.+++||+..........+...+..++++|+++.|++++.++.+++||..
T Consensus       129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            89999999999999854          44567999999988776666677788999999999999999999999999987


Q ss_pred             CCcc
Q 042260          150 ANSC  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      ....
T Consensus       209 ~~~~  212 (360)
T d1k32a3         209 VLNF  212 (360)
T ss_dssp             SSCE
T ss_pred             ccce
Confidence            6543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.1e-16  Score=116.33  Aligned_cols=146  Identities=9%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEe---ecCCCCeEEEEEcC-CCce-EEEecCCcEEEEEcCCCCCCC----eE---
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTI---QYPDSQVNRLEITP-NKHY-LAAAGNPHIRLFDVNSSSPQP----VM---   72 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~-~~~~~d~~i~i~d~~~~~~~~----~~---   72 (174)
                      ...+++++.|++|++||+..++.....   ......+....+.+ .+.. ++++.++.+.+|+........    ..   
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            346889999999999999876643332   22334455555554 3444 445678899999986432111    01   


Q ss_pred             ------EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           73 ------SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        73 ------~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                            ....|...+.+++|+|++++|+||+.||.|++||+++.+...++.....+..++|+|+++.+++++.|.++++|
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence                  11245667899999999999999999999999999998888777665666778899999999999999988888


Q ss_pred             eCCC
Q 042260          147 DLTA  150 (174)
Q Consensus       147 d~~~  150 (174)
                      ....
T Consensus       320 ~~~~  323 (342)
T d1yfqa_         320 AAID  323 (342)
T ss_dssp             SSSC
T ss_pred             eeeC
Confidence            7654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.5e-15  Score=116.74  Aligned_cols=148  Identities=11%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEe---ecCCCCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSY---DQHTNNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v   81 (174)
                      -++++.+.|++|.|||.++++.+..+..+. .+..++|+|+|+++++ +.|+.+++||+.+++.......   ..|...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            457999999999999999999999998764 5899999999998775 4688999999988765443332   2344555


Q ss_pred             EEEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeec------------ccCcEEEEEEccCCCEE-EEeeCCCcEEEEe
Q 042260           82 MAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYE------------SRAAVNTVVLHPNQTEL-ISGDQNGNIRVWD  147 (174)
Q Consensus        82 ~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd  147 (174)
                      .+..|+++|+++ ++++.++.+++||..+..+...+.            .......+.++|++..+ ++...++.|.+||
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            556677899975 788889999999999877655432            23456788999998875 4566788999999


Q ss_pred             CCCCcce
Q 042260          148 LTANSCS  154 (174)
Q Consensus       148 ~~~~~~~  154 (174)
                      ..+....
T Consensus       192 ~~~~~~~  198 (432)
T d1qksa2         192 YTDLNNL  198 (432)
T ss_dssp             TTCSSEE
T ss_pred             ccCCCcc
Confidence            9876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=3e-14  Score=102.42  Aligned_cols=153  Identities=12%  Similarity=0.159  Sum_probs=121.6

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +.++++.|++|.+||+++++.+..+... .....++|+|++..+ +++ .++.|++||+.+++  .+..+..+ .....+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~~-~~~~~~   79 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAG-SSPQGV   79 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECS-SSEEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeecc-cccccc
Confidence            4578889999999999999999988765 357899999998865 343 57889999998763  34445544 457889


Q ss_pred             EEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCCcceeecCcccc
Q 042260           85 GFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus        85 ~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      .++++++. ++++..++.+.+||.........+.....+..+.++|+++.++ ++..++.+.+|+..+............
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS  159 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC
Confidence            99998885 5566778899999999988888888778889999999999875 455688899999999887776654444


Q ss_pred             e
Q 042260          163 L  163 (174)
Q Consensus       163 ~  163 (174)
                      +
T Consensus       160 ~  160 (301)
T d1l0qa2         160 P  160 (301)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=1.2e-14  Score=105.91  Aligned_cols=149  Identities=9%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecC--CCCeEEEEEcCCCceEE-E-ecCCcEEEEEcCCCCCCCeEEeecCC---
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLA-A-AGNPHIRLFDVNSSSPQPVMSYDQHT---   78 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~-~-~~d~~i~i~d~~~~~~~~~~~~~~~~---   78 (174)
                      .++++++.|++|++||+++++.+..+..+  ...+..++++|++.+++ + +.++.|.+||+.+++.  +.....+.   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCcc
Confidence            58999999999999999999999988754  34467899999988653 3 3578899999988743  33333322   


Q ss_pred             --CCEEEEEEeeCCCEEEEec------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           79 --NNVMAVGFQCDGNWMYSGS------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        79 --~~v~~~~~~~~~~~l~t~~------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                        .....++++++++.++.+.            .+..+.+||.........+.....+..++++|+++.+++++.+  +.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~  157 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LH  157 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cc
Confidence              2344688999999988776            4678999999998888888777788899999999999988654  78


Q ss_pred             EEeCCCCcceeecC
Q 042260          145 VWDLTANSCSCELG  158 (174)
Q Consensus       145 iwd~~~~~~~~~~~  158 (174)
                      +||..+......+.
T Consensus       158 ~~d~~~~~~~~~~~  171 (337)
T d1pbyb_         158 VMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEETTTTEEEEEEC
T ss_pred             eeeeecCcEEEEee
Confidence            89999887665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=1.9e-14  Score=105.11  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260          100 GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus       100 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      +.+++||..+.+....+.....+.+++|+|+++.|++++.|+.|++||+++.++..++.++..-
T Consensus       272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            4677788777777666666677899999999999999999999999999999999887766543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.59  E-value=9.8e-14  Score=105.79  Aligned_cols=146  Identities=12%  Similarity=0.110  Sum_probs=105.8

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEee---cCCCCE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYD---QHTNNV   81 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~---~~~~~v   81 (174)
                      .++++.+.|++|++||+.+++.+.++..+. .+..++|+|+|++++++ .|+.+++||+.+++........   .|..-+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            467889999999999999999999998764 58999999999987654 6889999999887654433332   344555


Q ss_pred             EEEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeec------------ccCcEEEEEEccCCCEEEEee-CCCcEEEEe
Q 042260           82 MAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYE------------SRAAVNTVVLHPNQTELISGD-QNGNIRVWD  147 (174)
Q Consensus        82 ~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd  147 (174)
                      .+.+|+|+|+++ +++..++.+++||.....+.....            .......++.++++..++... ..+.+.+++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            666778899986 555689999999998876654432            223345667777777665443 345566666


Q ss_pred             CCCCc
Q 042260          148 LTANS  152 (174)
Q Consensus       148 ~~~~~  152 (174)
                      .....
T Consensus       192 ~~~~~  196 (426)
T d1hzua2         192 YKDID  196 (426)
T ss_dssp             CSSSS
T ss_pred             ecccc
Confidence            65543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1e-13  Score=100.81  Aligned_cols=77  Identities=9%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL  159 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  159 (174)
                      .....+++++..++.+  ++.+++||+++.+..........+.+++|+|+++.|++++.|++|++||.++.+..-++.+
T Consensus       243 ~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            3444555566666554  5789999999999888888888899999999999999999999999999999888877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.58  E-value=1.2e-12  Score=93.87  Aligned_cols=151  Identities=13%  Similarity=0.158  Sum_probs=115.0

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      ..+++++..++.+.+|+..+++.+..+..+ ..+..+.+++++..+..+ . ...+.+|+.....  ..... .......
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~  203 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTV-KVEAAPS  203 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECSSEEE
T ss_pred             CeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccccccccccccee--eeecc-cccCCcc
Confidence            456678888999999999999988888755 357888999987755443 3 4456777765542  22222 2345677


Q ss_pred             EEEEeeCCCEEEEec---CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCDGNWMYSGS---EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      .+++.++++.++.++   .++.|++||+.+.+....+.....+..++|+|+++.| ++++.|++|++||+++++...+++
T Consensus       204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            889999999776543   4568999999999888877777788999999999987 567789999999999998887764


Q ss_pred             c
Q 042260          159 L  159 (174)
Q Consensus       159 ~  159 (174)
                      .
T Consensus       284 v  284 (301)
T d1l0qa2         284 V  284 (301)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.7e-13  Score=98.04  Aligned_cols=147  Identities=12%  Similarity=0.236  Sum_probs=106.0

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeE-EeecCCCC
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVM-SYDQHTNN   80 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~-~~~~~~~~   80 (174)
                      .++++++.|++|++|++.+...+..+  ..+...+..++|+|+++.|+ ++ .++.|++|++......... ....+...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            45688999999999998765433222  24567899999999998764 33 3788999999765433222 22234456


Q ss_pred             EEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEe---ecccCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCCCc
Q 042260           81 VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQME---YESRAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTANS  152 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~  152 (174)
                      ...++++|+|++++.++. ++.+.+|+.........   ..+...+.++.++|+++.++.++. +..|.+|+.....
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            778999999999888774 67899998776544322   234556788899999998887664 5679999988654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=7.8e-13  Score=101.30  Aligned_cols=154  Identities=13%  Similarity=0.046  Sum_probs=110.0

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCce--eEEeec---CCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEe-
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRC--YRTIQY---PDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSY-   74 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~-   74 (174)
                      ++++++++++.|+++++||+.+++.  ...++.   +...+....|+|+++.+ ++ ..++.+++||..+++....... 
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            4788899999999999999988764  333332   22334445667788865 43 3588999999987743222111 


Q ss_pred             --------ecCCCCEEEEEEeeCCCE-EEEecCCCcEEEEeCCCCeeE--EeecccCcEEEEEEccCCCEEEEeeC-CCc
Q 042260           75 --------DQHTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQ--MEYESRAAVNTVVLHPNQTELISGDQ-NGN  142 (174)
Q Consensus        75 --------~~~~~~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~  142 (174)
                              -.+......+.+++++.. +++...++.+.+||.......  ..+.....+..++|+|+++++++++. +..
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccce
Confidence                    023456778888988875 567788899999999876533  34456677899999999998877665 557


Q ss_pred             EEEEeCCCCcceee
Q 042260          143 IRVWDLTANSCSCE  156 (174)
Q Consensus       143 i~iwd~~~~~~~~~  156 (174)
                      +.++|.........
T Consensus       231 v~v~d~~~~~~~~~  244 (432)
T d1qksa2         231 LVVIDTKEGKLVAI  244 (432)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEeecccceEEEE
Confidence            99999988776644

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.41  E-value=4.5e-13  Score=102.05  Aligned_cols=106  Identities=16%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             ceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE--eec----ccC
Q 042260           48 HYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM--EYE----SRA  120 (174)
Q Consensus        48 ~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~--~~~----~~~  120 (174)
                      .++++ ..|+.|++||+.++  +.+..++.+ ..+..++|+|+|+++++++.|+.+++||+.+.....  .+.    +..
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~--~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK--KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC--SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC--cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            34444 46889999999887  445566665 468999999999999999999999999998765432  222    233


Q ss_pred             cEEEEEEccCCCEEEEe-eCCCcEEEEeCCCCcceee
Q 042260          121 AVNTVVLHPNQTELISG-DQNGNIRVWDLTANSCSCE  156 (174)
Q Consensus       121 ~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~  156 (174)
                      .+.+.+|+|+++.|+++ ..++.+++||.....+...
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~  146 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  146 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEE
Confidence            45667778899987654 5789999999999876644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.41  E-value=8e-11  Score=87.02  Aligned_cols=154  Identities=6%  Similarity=-0.041  Sum_probs=108.2

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecC------CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ..++++.+.|+++.+|+..+++........      ........+.+++.++..+.++.+.+|+..............+.
T Consensus       177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  256 (373)
T d2madh_         177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecccc
Confidence            346688999999999999888776554322      11233455666777777777788888888765432222222111


Q ss_pred             ----------CCEEEEEEeeCCC----------EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCE--EEE
Q 042260           79 ----------NNVMAVGFQCDGN----------WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTE--LIS  136 (174)
Q Consensus        79 ----------~~v~~~~~~~~~~----------~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s  136 (174)
                                .....+++++++.          .+++...++.+.+||..+.+....+.....+..++|+|+++.  +++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt  336 (373)
T d2madh_         257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             CcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEE
Confidence                      1223334444444          345566778899999999888888888888999999999984  457


Q ss_pred             eeCCCcEEEEeCCCCcceeecC
Q 042260          137 GDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++.|++|++||+.+++....+.
T Consensus       337 ~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         337 SAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             eCCCCeEEEEECCCCCEEEEEC
Confidence            8899999999999999988875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.6e-10  Score=83.70  Aligned_cols=104  Identities=13%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCCCCee----EEeecccCcEE
Q 042260           49 YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVC----QMEYESRAAVN  123 (174)
Q Consensus        49 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~----~~~~~~~~~v~  123 (174)
                      +++++.++.|++|++...+.......-.|...+..++|+|+|++| +++..|+.|++|++.....    .........+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            345557889999999765332223333577889999999999988 4556689999999875422    22223445577


Q ss_pred             EEEEccCCCEEEEeeC-CCcEEEEeCCCCc
Q 042260          124 TVVLHPNQTELISGDQ-NGNIRVWDLTANS  152 (174)
Q Consensus       124 ~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~  152 (174)
                      .++++|+++.|++++. ++.|.+|+.....
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             EEEEcCCCCEEeecccCCCceeeecccccc
Confidence            8999999999988875 6789999887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=3.5e-10  Score=82.73  Aligned_cols=112  Identities=9%  Similarity=0.097  Sum_probs=78.9

Q ss_pred             eEEEecCCcEEEEEcCCCCCCCeEEeecCC----------CCEEEEEEeeCCCEEEEecCC----------CcEEEEeCC
Q 042260           49 YLAAAGNPHIRLFDVNSSSPQPVMSYDQHT----------NNVMAVGFQCDGNWMYSGSED----------GTVKIWDLR  108 (174)
Q Consensus        49 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~t~~~d----------g~v~iwd~~  108 (174)
                      ++.++.++.+.+|++..+..........+.          .....+++++++..++....+          ..|.+||..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            344455778899998776433222222111          122346778888877665433          469999999


Q ss_pred             CCeeEEeecccCcEEEEEEccCCC--EEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260          109 APVCQMEYESRAAVNTVVLHPNQT--ELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +.+.+.++.....+.+++|+|+++  .+++++.|++|++||.++++.+.++...
T Consensus       289 t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         289 TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            988877777777789999999997  3456778999999999999998887533

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.06  E-value=2.6e-08  Score=73.16  Aligned_cols=137  Identities=9%  Similarity=-0.038  Sum_probs=96.5

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEeecCCCC-
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYDQHTNN-   80 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~-   80 (174)
                      .++.|.+||.++++.+..+..+.  ...++|+|++..++.+.           ++.+++||..+++...  ....+... 
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~--~~~~~~~~~  120 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA--DIELPDAPR  120 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEE--EEecCCcce
Confidence            45679999999999998876554  33789999998876542           4669999998875432  22222222 


Q ss_pred             ------EEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCC
Q 042260           81 ------VMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        81 ------v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~  151 (174)
                            ...+.++++++.++..  ..++.+.+|+.........   .....++.++|++..+ ++.+.|+.+.+||....
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence                  2456788888865443  5567899999887655433   2345678899988765 57888999999999887


Q ss_pred             cceee
Q 042260          152 SCSCE  156 (174)
Q Consensus       152 ~~~~~  156 (174)
                      .....
T Consensus       198 ~~~~~  202 (373)
T d2madh_         198 AAGAG  202 (373)
T ss_pred             eeeEE
Confidence            65543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=1.1e-09  Score=79.33  Aligned_cols=108  Identities=11%  Similarity=0.041  Sum_probs=83.1

Q ss_pred             EEEeeCCCcEEEEECCCCceeEEe-ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260            8 LATASYDKTIKFWEAKSGRCYRTI-QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF   86 (174)
Q Consensus         8 l~s~s~D~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~   86 (174)
                      ++++..+..+.+||..++...... ..+...+..+.+++++..++...++.+++||..+++  .+.... +...+.+++|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~va~  299 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK--LIKAAN-LDHTYYCVAF  299 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTE--EEEEEE-CSSCCCEEEE
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCc--EEEEEc-CCCCEEEEEE
Confidence            445666778999999888765443 445666788888888777776667789999998763  233332 3456889999


Q ss_pred             eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc
Q 042260           87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES  118 (174)
Q Consensus        87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~  118 (174)
                      +++|+++++++.|+.|++||.++.+.+.++..
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            99999999999999999999999988876654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=4.3e-09  Score=80.41  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCC
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSP   68 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~   68 (174)
                      ++.++..  .|+.+.+||+.+++....+..     +...|.+..|+|++..|+.+.          ++.+.+||+.+++.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence            4555543  477899999999987655543     235689999999998766542          34678999988754


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-------------------ccCcEEEEEEcc
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-------------------SRAAVNTVVLHP  129 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------------------~~~~v~~~~~~~  129 (174)
                      ..   +..+...+....|+|+|+.+|.. .++.+.+|+...........                   .......+.|+|
T Consensus       105 ~~---l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP  180 (470)
T d2bgra1         105 IT---EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (470)
T ss_dssp             CC---SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             cc---cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC
Confidence            33   44577889999999999999986 56689999988765432211                   112235578999


Q ss_pred             CCCEEEEeeCCCc-EEEEeC
Q 042260          130 NQTELISGDQNGN-IRVWDL  148 (174)
Q Consensus       130 ~~~~l~s~~~d~~-i~iwd~  148 (174)
                      +++.|+....|.+ +..|++
T Consensus       181 DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         181 NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSEEEEEEEECTTCCEEEE
T ss_pred             CCCccceeEecCCcCceEEE
Confidence            9999998765433 544443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=8.3e-09  Score=76.35  Aligned_cols=86  Identities=5%  Similarity=0.019  Sum_probs=64.5

Q ss_pred             EEEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCE--EEEeeCCCcEEEEeCCCC
Q 042260           83 AVGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTE--LISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~  151 (174)
                      .++++++++.++....         ...+.+||..+.+...++.....+..++|+|+++.  ++++..|+.|++||..++
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            3566677665544321         23588999999888877777778899999999873  456677899999999999


Q ss_pred             cceeecCcccceeEEEE
Q 042260          152 SCSCELGLQYGLRTFLF  168 (174)
Q Consensus       152 ~~~~~~~~~~~~~~~~~  168 (174)
                      +...++++........+
T Consensus       348 k~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         348 QDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEEECCCCSCCCEEEC
T ss_pred             CEEEEEECCCCCCEEEE
Confidence            99988887666655443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.76  E-value=6.2e-08  Score=71.50  Aligned_cols=138  Identities=12%  Similarity=-0.007  Sum_probs=90.0

Q ss_pred             EEEeeCCCc--EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEe
Q 042260            8 LATASYDKT--IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         8 l~s~s~D~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~   74 (174)
                      .++...+++  +.+||..+++.+..+..+..  ..++|+|++..++.+.           ++.|++||..+.+.  ....
T Consensus        37 ~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~--~~~i  112 (368)
T d1mdah_          37 TLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADI  112 (368)
T ss_dssp             EECTTTCSSEEEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEE
T ss_pred             EeeccCCCcceEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE--eeee
Confidence            344566666  55669999999888876543  3588999998766532           45699999987643  2222


Q ss_pred             ecCC-------CCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260           75 DQHT-------NNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW  146 (174)
Q Consensus        75 ~~~~-------~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw  146 (174)
                      ..+.       .....++|+++|++++.+. .++.+.+||+.+.+.......+....  ........+++.+.||.+..|
T Consensus       113 ~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~  190 (368)
T d1mdah_         113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEE
T ss_pred             cCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEE
Confidence            2221       1223588999999887665 67999999999988776654332211  111123445566677777777


Q ss_pred             eCCCC
Q 042260          147 DLTAN  151 (174)
Q Consensus       147 d~~~~  151 (174)
                      ++...
T Consensus       191 ~~~~~  195 (368)
T d1mdah_         191 DLAAA  195 (368)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            76644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.75  E-value=8.3e-07  Score=64.25  Aligned_cols=138  Identities=11%  Similarity=0.056  Sum_probs=89.4

Q ss_pred             eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-----------cCCcEEEEEcCCCCCCCeEEee-c---
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-----------GNPHIRLFDVNSSSPQPVMSYD-Q---   76 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~d~~i~i~d~~~~~~~~~~~~~-~---   76 (174)
                      +.+.+|.+||..+++.+..+..+.  ...++|+|++..++..           .++.|++||..+++........ .   
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            456679999999999998887553  3478999999866542           2567999999887433222111 1   


Q ss_pred             -CCCCEEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeecccC--------cEEEEEEccCCCEEEEe-eCCCcEE
Q 042260           77 -HTNNVMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRA--------AVNTVVLHPNQTELISG-DQNGNIR  144 (174)
Q Consensus        77 -~~~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~s~-~~d~~i~  144 (174)
                       .......++|++++++++.+  +.+..+.+||..+......+....        ....+.+++++..++.. ..++.+.
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence             11223457899999987665  456789999999887766554322        22345666666655443 3344555


Q ss_pred             EEeCCCC
Q 042260          145 VWDLTAN  151 (174)
Q Consensus       145 iwd~~~~  151 (174)
                      .++....
T Consensus       183 ~~~~~~~  189 (355)
T d2bbkh_         183 ITHTEVF  189 (355)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            5555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=4.2e-08  Score=74.75  Aligned_cols=113  Identities=16%  Similarity=0.188  Sum_probs=86.2

Q ss_pred             EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeE---EeecCCCCEEEEEEeeCCCEEEEecC---------CCcEEEEeC
Q 042260           40 RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM---SYDQHTNNVMAVGFQCDGNWMYSGSE---------DGTVKIWDL  107 (174)
Q Consensus        40 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~  107 (174)
                      .+.|.+++.++. ..++.+.+||+.+++...+.   .+..+...+.+..|+|||++|+.++.         ++.+.+||+
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            466888877665 45678999999987543222   12334567999999999999998753         567899999


Q ss_pred             CCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260          108 RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS  154 (174)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  154 (174)
                      .+........+...+....|+|+|+.+|.. .++.+.+|+...+...
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~  145 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY  145 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred             CCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCcee
Confidence            988765544566789999999999999986 4678999999987644

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.54  E-value=2.4e-06  Score=64.86  Aligned_cols=144  Identities=9%  Similarity=0.054  Sum_probs=94.8

Q ss_pred             CcEEE-EEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCc--eEEEecCCcE------------------EEE
Q 042260            4 PSVIL-ATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKH--YLAAAGNPHI------------------RLF   61 (174)
Q Consensus         4 ~~~~l-~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i------------------~i~   61 (174)
                      +++.| ++...+.+|.++|+.++++...+..+ ......+.|+|++.  +++......+                  ..+
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            35544 66778899999999999988776643 45688999999876  4444333333                  335


Q ss_pred             EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----------------------------------------C
Q 042260           62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----------------------------------------G  100 (174)
Q Consensus        62 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----------------------------------------g  100 (174)
                      |..+.+.  ...... ......++++++|++++.++.+                                         +
T Consensus       162 D~~t~~v--~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         162 DAETMDV--AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             ETTTCSE--EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             cCcccee--eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            5544322  222222 2346778888888887766533                                         3


Q ss_pred             cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260          101 TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus       101 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      .+.+++........++..+.....+.++|++++++ ++..+++|.+||++.
T Consensus       239 v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         239 VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            44444444444444554455567889999999875 567899999999875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.44  E-value=2.8e-06  Score=64.49  Aligned_cols=133  Identities=8%  Similarity=0.021  Sum_probs=90.7

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecC------------------------------CCCeEEEEEcCCCceEEEe--c
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYP------------------------------DSQVNRLEITPNKHYLAAA--G   54 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~--~   54 (174)
                      .++|++.+|+|++||+.+++.+..+..-                              .........+|+|+++...  .
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            3789999999999999998887765321                              0112223345678776544  5


Q ss_pred             CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC--EEEEecCCC-----------------cEEEEeCCCCeeEEe
Q 042260           55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN--WMYSGSEDG-----------------TVKIWDLRAPVCQME  115 (174)
Q Consensus        55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~t~~~dg-----------------~v~iwd~~~~~~~~~  115 (174)
                      +..|.++|+++.+...+... .+......++|+++|+  +++..+++.                 .+..+|..+.....+
T Consensus        93 ~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            67899999988754333322 2456788999999888  455444432                 234577777666665


Q ss_pred             ecccCcEEEEEEccCCCEEEEeeCC
Q 042260          116 YESRAAVNTVVLHPNQTELISGDQN  140 (174)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~l~s~~~d  140 (174)
                      .........++++|+++.+++.+.+
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EecCCCccceEECCCCCEEEEEecC
Confidence            5555667889999999998887655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.25  E-value=0.00019  Score=51.75  Aligned_cols=147  Identities=10%  Similarity=0.131  Sum_probs=87.1

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C--CcEEEEEc--CCCCCCCeEEeecCCC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N--PHIRLFDV--NSSSPQPVMSYDQHTN   79 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d--~~i~i~d~--~~~~~~~~~~~~~~~~   79 (174)
                      +.+.++-..++.|.-|+..+++....+.........+++++++.++++.. +  ....++.+  ................
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  130 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  130 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCccc
Confidence            44556666667777777666655544444455678999999998777642 2  22334443  3332211111111234


Q ss_pred             CEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCC
Q 042260           80 NVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTAN  151 (174)
Q Consensus        80 ~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~  151 (174)
                      ....+++.++|++.++....      +.+..++............-...+.++|+|+++.| ++-+..+.|..||+...
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            56788899999987775432      23555555443322222223456889999999866 45566788999998753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.14  E-value=0.00026  Score=51.92  Aligned_cols=149  Identities=15%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             CcEEEEE-eeCCCcEEEEECCC-Ccee--EEee--cCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEee
Q 042260            4 PSVILAT-ASYDKTIKFWEAKS-GRCY--RTIQ--YPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYD   75 (174)
Q Consensus         4 ~~~~l~s-~s~D~~v~vwd~~~-~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~   75 (174)
                      +++++++ ......|.+|+... +...  ....  ........+.|+|++.++...  .++.|.+|++..+.........
T Consensus       155 dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~  234 (365)
T d1jofa_         155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEee
Confidence            4444444 44455788887543 3322  2222  234567889999999876544  4678999998765433222111


Q ss_pred             -----------------cCCCCEEEEEEeeCCCEEEEecC------CCcEEEEeCCCCeeEE---e----ecccCcEEEE
Q 042260           76 -----------------QHTNNVMAVGFQCDGNWMYSGSE------DGTVKIWDLRAPVCQM---E----YESRAAVNTV  125 (174)
Q Consensus        76 -----------------~~~~~v~~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~---~----~~~~~~v~~~  125 (174)
                                       .+......+.++|+|++++.+..      .+.|..|++...-...   .    .........+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i  314 (365)
T d1jofa_         235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred             eeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEE
Confidence                             11123567889999999887632      2237777765421111   1    1123345778


Q ss_pred             EEcc-CCCEEEEe-eCCCcEEEEeCCCCc
Q 042260          126 VLHP-NQTELISG-DQNGNIRVWDLTANS  152 (174)
Q Consensus       126 ~~~~-~~~~l~s~-~~d~~i~iwd~~~~~  152 (174)
                      +++| ++++|+++ ..++.|.+|+++...
T Consensus       315 ~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         315 SPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            9998 78877665 467899999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.09  E-value=0.00029  Score=50.12  Aligned_cols=122  Identities=11%  Similarity=0.187  Sum_probs=85.0

Q ss_pred             ceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260           26 RCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI  104 (174)
Q Consensus        26 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i  104 (174)
                      +.+..+.. ...+..+++.|+|.++++. .++.|..+|....    ...+......+.++++.++|+++++...++.+..
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEE
Confidence            33444432 2358899999999988775 4565666654322    2223345678999999999999999988888888


Q ss_pred             EeCCCC--eeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          105 WDLRAP--VCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       105 wd~~~~--~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      |+....  ...  .........+.+++.++++.+++.+.++.+..+|...+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            876432  211  222334568999999999988888888888888887653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=0.00091  Score=46.40  Aligned_cols=145  Identities=9%  Similarity=0.071  Sum_probs=91.5

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA   83 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~   83 (174)
                      +.++++....+.+++++..++..+..... .....++++.+++.++++. .+..+..++.....  .............+
T Consensus        68 g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~  144 (260)
T d1rwia_          68 GTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDG  144 (260)
T ss_dssp             CCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS--CEECCCCSCCSCCE
T ss_pred             CCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccce--eeeeeecccCCcce
Confidence            44566666666666665554444433221 2357889999888776654 34445555543321  11111111234567


Q ss_pred             EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260           84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus        84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      +++.++++.+++...++.|..+|......... ...-.....+++.++++++++...++.|..++.....
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            88889999999988899999999876443322 2233456899999999988887778888888876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=0.00051  Score=47.72  Aligned_cols=112  Identities=7%  Similarity=0.068  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260           37 QVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME  115 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~  115 (174)
                      ...++++.+++.++++ ..+..+..+|.....  ..............+++.++|+++++....+.|..++.........
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~  218 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL  218 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccce--eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE
Confidence            3467888888776655 355667888865432  1111123345678899999999999998899998888765432221


Q ss_pred             -ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260          116 -YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus       116 -~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                       ...-.....++++++++.+++-..++.|+..+...
T Consensus       219 ~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         219 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence             12224578999999998777766666666555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.95  E-value=0.0011  Score=46.40  Aligned_cols=138  Identities=11%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe--ecCCCCE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY--DQHTNNV   81 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~v   81 (174)
                      ++++....+.+.+++. +++.+..+..  +......+++.+++.++++. ..+.|++||....   .+..+  .+.....
T Consensus       127 i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         127 IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYP  202 (279)
T ss_dssp             EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSE
T ss_pred             EEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCc---eeeeecccccccCC
Confidence            3444444444555543 3444444422  23446778888887766554 4567899987532   22222  2344567


Q ss_pred             EEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260           82 MAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA  150 (174)
Q Consensus        82 ~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (174)
                      ..+++.++|+.+++-.. ++.|.+++.. ...+.++..   ......+++.|++..++ +..+..|++|....
T Consensus       203 ~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         203 IGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             cccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            88999999998888654 5579999865 443434422   23578999999987555 45788999998875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.75  E-value=0.0029  Score=44.72  Aligned_cols=146  Identities=13%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCe-EEeecCCCC
Q 042260            3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPV-MSYDQHTNN   80 (174)
Q Consensus         3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~   80 (174)
                      .++.++++...+++|..||... + ...+......+.++++.+++.++++. .++.+..++......... .........
T Consensus        37 pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          37 PDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             TTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             CCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccc
Confidence            3567888888888888887553 3 22333345678999999998877765 556677777654322211 111223456


Q ss_pred             EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-----------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260           81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-----------RAAVNTVVLHPNQTELISGDQNGNIRVWDLT  149 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (174)
                      ...+.+.++++++++.+.++.+..+|............           ...++.+.+.. +....+.+.++.|..+++.
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBC
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccc
Confidence            78889999999999999999999998877643322111           12356666643 3344556677888888877


Q ss_pred             CC
Q 042260          150 AN  151 (174)
Q Consensus       150 ~~  151 (174)
                      ..
T Consensus       194 ~~  195 (302)
T d2p4oa1         194 ST  195 (302)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.65  E-value=0.002  Score=46.11  Aligned_cols=119  Identities=8%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCc-----eEEE-ecCCcEEEEEcCCCCCCC----eEEeec-CCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260           38 VNRLEITPNKH-----YLAA-AGNPHIRLFDVNSSSPQP----VMSYDQ-HTNNVMAVGFQCDGNWMYSGSEDGTVKIWD  106 (174)
Q Consensus        38 v~~~~~~~~~~-----~~~~-~~d~~i~i~d~~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd  106 (174)
                      .+.++|++++.     +.++ +..+.|..||+.......    ...+.. .....-.+++..+|+..++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            45788877542     3333 345677778775432111    111111 122355788999999988888889999999


Q ss_pred             CCCCeeEEeecc-cCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCC-Ccceee
Q 042260          107 LRAPVCQMEYES-RAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTA-NSCSCE  156 (174)
Q Consensus       107 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~  156 (174)
                      .+.......+.. ...+.+++|.|+++.| ++.+.++.|...++.. ++..+.
T Consensus       254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~~~  306 (314)
T d1pjxa_         254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQYC  306 (314)
T ss_dssp             TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCCCGG
T ss_pred             CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChhhhc
Confidence            886655444443 3567899999988754 5666778888888774 333333

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00031  Score=53.34  Aligned_cols=135  Identities=12%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             eCCCcEEEEECCCCceeEEeec---CCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCCeEEeecCC
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQY---PDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQPVMSYDQHT   78 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~   78 (174)
                      ..||.+.+||+.+++....+..   ....+....++|++..++...          .+...++|+.++....+.......
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            4578899999998876443432   223567788999988665432          345788999877654443222334


Q ss_pred             CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeeccc-C-----------------cEEEEEEccCCCEEEEeeC
Q 042260           79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYESR-A-----------------AVNTVVLHPNQTELISGDQ  139 (174)
Q Consensus        79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~-~-----------------~v~~~~~~~~~~~l~s~~~  139 (174)
                      ..+....|+|+|+.+|-.. ++.+.+.+....... .+.... .                 .-..+-|+|+++.|+....
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            4555678999999988765 456777776554322 222111 1                 1146779999999987643


Q ss_pred             -CCcEEEEe
Q 042260          140 -NGNIRVWD  147 (174)
Q Consensus       140 -d~~i~iwd  147 (174)
                       +..|..+.
T Consensus       193 D~s~V~~~~  201 (465)
T d1xfda1         193 NDSRVPIME  201 (465)
T ss_dssp             ECTTSCEEE
T ss_pred             cccccceee
Confidence             33344443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0072  Score=41.21  Aligned_cols=122  Identities=9%  Similarity=0.046  Sum_probs=71.0

Q ss_pred             cEEEEEeeCCCcEE--EEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260            5 SVILATASYDKTIK--FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTNN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~   80 (174)
                      ..++++...++...  +.+...+.... ............|+|++..++..  ..+...+|.........  ....+...
T Consensus       139 ~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  215 (269)
T d2hqsa1         139 QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFL  215 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSS
T ss_pred             ccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCcc
Confidence            34455555565444  44455443332 22344456677899998876543  33344444443322122  22234455


Q ss_pred             EEEEEEeeCCCEEEEecC---CCcEEEEeCCCCeeEEeecccCcEEEEEEcc
Q 042260           81 VMAVGFQCDGNWMYSGSE---DGTVKIWDLRAPVCQMEYESRAAVNTVVLHP  129 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  129 (174)
                      .....|+|+|+.|+-.+.   ...+.++++..............+...+|+|
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            677889999998875443   3478899998766544444456677888887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.41  E-value=0.0058  Score=44.42  Aligned_cols=115  Identities=13%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCC-eEEe--ecCCCCEEEEEEeeCCCEEEE-ecCCCcEEEEeCCCC
Q 042260           37 QVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQP-VMSY--DQHTNNVMAVGFQCDGNWMYS-GSEDGTVKIWDLRAP  110 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~  110 (174)
                      .+..+.|+|++++++..  +.+.+.+|+........ ....  .........+.|+|++++++. ...++.|.+||+...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            47889999999876655  35568888765432211 1111  123456888999999997744 556889999998654


Q ss_pred             eeE--Ee---e---------------cccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCC
Q 042260          111 VCQ--ME---Y---------------ESRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTAN  151 (174)
Q Consensus       111 ~~~--~~---~---------------~~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~  151 (174)
                      ...  ..   .               ........+.++|++++|+++..      ...|..|++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence            211  11   0               01123568899999999887532      223777777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.34  E-value=0.012  Score=41.85  Aligned_cols=152  Identities=7%  Similarity=0.049  Sum_probs=88.6

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCC----CeEEEEEcCCCceEEEecC--------------CcEEEEEcCCCCC
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDS----QVNRLEITPNKHYLAAAGN--------------PHIRLFDVNSSSP   68 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~d--------------~~i~i~d~~~~~~   68 (174)
                      .++.+.....+...|..++.........+.    ..+.+++.+++.+.++...              ..-++|-+.....
T Consensus        84 ~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~  163 (314)
T d1pjxa_          84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ  163 (314)
T ss_dssp             EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred             EEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc
Confidence            444555555677777765433221111111    2577899999887665321              1124554433221


Q ss_pred             CCeEEeecCCCCEEEEEEeeCCC-----EEEEecCCCcEEEEeCCCCeeEE------eecc--cCcEEEEEEccCCCEEE
Q 042260           69 QPVMSYDQHTNNVMAVGFQCDGN-----WMYSGSEDGTVKIWDLRAPVCQM------EYES--RAAVNTVVLHPNQTELI  135 (174)
Q Consensus        69 ~~~~~~~~~~~~v~~~~~~~~~~-----~l~t~~~dg~v~iwd~~~~~~~~------~~~~--~~~v~~~~~~~~~~~l~  135 (174)
                        .............++|+++++     +.++-+..+.|..+|+...-...      .+..  ......+++..+++..+
T Consensus       164 --~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         164 --MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             --EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             --eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence              111222233456788888764     56677888899998875432111      1111  12356899999999877


Q ss_pred             EeeCCCcEEEEeCCCCcceeecCcc
Q 042260          136 SGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       136 s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      +....+.|..||.+.+.....+..+
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p  266 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECS
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECC
Confidence            7777888999999877655555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=0.012  Score=41.52  Aligned_cols=143  Identities=12%  Similarity=0.058  Sum_probs=89.9

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCEE
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNVM   82 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~   82 (174)
                      +.+..+=-..+.|.-||.++++. ..+.. +..+..+.+.+++.++++.. ..+..+|..+++...+.....  ......
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~-~~~~~-~~~~~~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~n  106 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRK-TVHAL-PFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN  106 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEE-EEEEC-SSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeE-EEEEC-CCCcEEEEEecCCCEEEEEe-CccEEeecccceeeEEeeeecCCCcccce
Confidence            33444444556677777776643 23332 34678888888888887765 468889988775433322211  123477


Q ss_pred             EEEEeeCCCEEEEecC----CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260           83 AVGFQCDGNWMYSGSE----DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA  150 (174)
Q Consensus        83 ~~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~  150 (174)
                      .+.+.++|++.++...    .+.-.+|.+...........-...+.++++++++.+. +-+..+.|..+++..
T Consensus       107 d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         107 DGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             EEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             eeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence            8888899997776532    2344556555555444343344568999999988654 556678898888753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.13  E-value=0.0031  Score=48.99  Aligned_cols=66  Identities=14%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260           98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus        98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      ..|.+.-+|+.+.++...+....++..-.+...+..|++|+.||.++-+|.++++.+++.+++...
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~  529 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI  529 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc
Confidence            347788899999888776655554443233446778889999999999999999999887655544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.021  Score=39.60  Aligned_cols=139  Identities=13%  Similarity=0.157  Sum_probs=89.3

Q ss_pred             EeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe--ecCCCCEEEEE
Q 042260           10 TASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY--DQHTNNVMAVG   85 (174)
Q Consensus        10 s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~   85 (174)
                      ..+.++.|..++. .++....+... -.....+++.+++.++++. ....+.+++...   ..+..+  ..+......++
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g---~~~~~~g~~~~~~~~~~i~  163 (279)
T d1q7fa_          88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVV  163 (279)
T ss_dssp             ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEE
T ss_pred             ccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC---ceeecccccccccccceee
Confidence            3444556666654 45555555322 2345778888888766654 344566666432   222222  33456788888


Q ss_pred             EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCCCcce
Q 042260           86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTANSCS  154 (174)
Q Consensus        86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~  154 (174)
                      +.++++.+++....+.|.+||.... ...++..   -.....+++.++++.+++-.. ++.|.+++.. ++..
T Consensus       164 ~d~~g~i~v~d~~~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~  234 (279)
T d1q7fa_         164 VNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI  234 (279)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred             eccceeEEeeeccccceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE
Confidence            9999999999999999999998653 3444432   234788999999997776543 4568888853 4444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.015  Score=43.72  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=81.9

Q ss_pred             eCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC-----------
Q 042260           12 SYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-----------   78 (174)
Q Consensus        12 s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------   78 (174)
                      +..+.+.++|+.+++...-..  .....+....|+|+|..++-..++.+.+.+...+.... .+..+..           
T Consensus        88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~-lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1          88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE-EECCCBTTTEEEEECCHH
T ss_pred             eccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE-EecccCcceeeccccchh
Confidence            345778899998876543222  22334556789999988876677778877776543222 2212111           


Q ss_pred             ------CCEEEEEEeeCCCEEEEecC-CCcEE---------------------------------EEeCCCCeeEEeec-
Q 042260           79 ------NNVMAVGFQCDGNWMYSGSE-DGTVK---------------------------------IWDLRAPVCQMEYE-  117 (174)
Q Consensus        79 ------~~v~~~~~~~~~~~l~t~~~-dg~v~---------------------------------iwd~~~~~~~~~~~-  117 (174)
                            ..-.++-|+|+|+.||.... +..|.                                 ++|+.......... 
T Consensus       167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~  246 (465)
T d1xfda1         167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (465)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence                  11246779999999988642 22333                                 33332221111000 


Q ss_pred             ------ccCcEEEEEEccCCCEEEEeeC-C---CcEEEEeCCCCcce
Q 042260          118 ------SRAAVNTVVLHPNQTELISGDQ-N---GNIRVWDLTANSCS  154 (174)
Q Consensus       118 ------~~~~v~~~~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~~  154 (174)
                            ...-+..+.|.|+++.++.... +   ..|.++|..++.+.
T Consensus       247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence                  0112577889998876554322 2   24888999888655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.65  E-value=0.02  Score=38.94  Aligned_cols=92  Identities=12%  Similarity=0.079  Sum_probs=59.3

Q ss_pred             EcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecC----C--CcEEEEeCCCCeeEE
Q 042260           43 ITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE----D--GTVKIWDLRAPVCQM  114 (174)
Q Consensus        43 ~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~----d--g~v~iwd~~~~~~~~  114 (174)
                      .+|+  |..++-..++.|.+.|+..++..   .+..+........|+|+|+.|+-...    +  ..+.+.+........
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEE---EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4566  77665455667888888776432   23456677888999999999886432    2  236666776655432


Q ss_pred             eec-------ccCcEEEEEEccCCCEEEEe
Q 042260          115 EYE-------SRAAVNTVVLHPNQTELISG  137 (174)
Q Consensus       115 ~~~-------~~~~v~~~~~~~~~~~l~s~  137 (174)
                      .-.       .........|+|+++.|+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEE
Confidence            111       11234678899999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.61  E-value=0.014  Score=45.14  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260          100 GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus       100 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      |.+.-||+.+.+.+.......+...=.+.-.+..|++|+.||.++.+|.++++.++++.++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence            578889999988877665544333222333678889999999999999999999988765544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.51  E-value=0.061  Score=38.43  Aligned_cols=148  Identities=11%  Similarity=0.110  Sum_probs=85.6

Q ss_pred             CcEEEEEeeCCC-----------cEEEEECCCCceeE--Eeec-CCCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCC
Q 042260            4 PSVILATASYDK-----------TIKFWEAKSGRCYR--TIQY-PDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSS   67 (174)
Q Consensus         4 ~~~~l~s~s~D~-----------~v~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~   67 (174)
                      ++++++-|+.+.           .+.+||..+++-..  .... +........+.+++.+++.++  ...+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            567777777532           26789988875422  2222 222344567788888877664  3578999987765


Q ss_pred             CCCeEEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeEEeeccc---------C------cEEEEE
Q 042260           68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQMEYESR---------A------AVNTVV  126 (174)
Q Consensus        68 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~---------~------~v~~~~  126 (174)
                      ......+...+. -...+..++|+.++.|+.+      ..+.+||..+......-...         .      .-.-+.
T Consensus       110 w~~~~~~~~~r~-~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (387)
T d1k3ia3         110 WIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  188 (387)
T ss_dssp             EEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             cccccccccccc-ccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence            433322222222 2345566789998888753      36899998875533211100         0      001122


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260          127 LHPNQTELISGDQNGNIRVWDLTANS  152 (174)
Q Consensus       127 ~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (174)
                      .-++++.+..++.++.+..+|.....
T Consensus       189 ~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         189 GWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             EeCCCCEEEecCcCCcEEecCcccCc
Confidence            23456666666666677777777654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.51  E-value=0.0079  Score=46.43  Aligned_cols=65  Identities=14%  Similarity=0.229  Sum_probs=48.3

Q ss_pred             CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260           99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus        99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      .|.+.-||+.+.+....+....+...-.+.-.+..|+.|+.||.++-+|.++++.+++++++...
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~  501 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI  501 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCc
Confidence            36788899999988776655444333233335678889999999999999999999887655433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.42  E-value=0.022  Score=43.95  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=47.2

Q ss_pred             CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260           99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL  163 (174)
Q Consensus        99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (174)
                      .|.+.-+|+++.+....+....+..+-.+...+..|+.|+.||.++-+|.++++.++++.++...
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence            46899999999887766654433222122235678888999999999999999999887655444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.15  E-value=0.11  Score=36.17  Aligned_cols=160  Identities=11%  Similarity=0.087  Sum_probs=98.3

Q ss_pred             CcEEEEEeeCCCcEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEec-----CCcEEEEEcCCCCCCCeEEe
Q 042260            4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAG-----NPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~   74 (174)
                      ++.++++ +.+ -+..+|..+++...-....    ...++++.+.|+|.+.++..     .+.-.+|.+..++...+  .
T Consensus        69 dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~--~  144 (295)
T d2ghsa1          69 DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKL--F  144 (295)
T ss_dssp             TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEE--E
T ss_pred             CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEE--e
Confidence            4555554 445 4899999988754332211    23478899999998877642     22346666655432222  1


Q ss_pred             ecCCCCEEEEEEeeCCCE-EEEecCCCcEEEEeCCCCe------e-E-Eee-cccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260           75 DQHTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPV------C-Q-MEY-ESRAAVNTVVLHPNQTELISGDQNGNIR  144 (174)
Q Consensus        75 ~~~~~~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~------~-~-~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~  144 (174)
                       ........++++++++. +++.+..+.|..+++....      . . ... ........+++..+++..++.-..+.|.
T Consensus       145 -~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         145 -ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             -EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             -eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence             22344667889998874 5667778889888864211      1 1 111 1234578899999998777665677899


Q ss_pred             EEeCCCCcceeecCccc-ceeEEEEE
Q 042260          145 VWDLTANSCSCELGLQY-GLRTFLFY  169 (174)
Q Consensus       145 iwd~~~~~~~~~~~~~~-~~~~~~~~  169 (174)
                      .||. .++....+.+|. .+....|.
T Consensus       224 ~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         224 RYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             EecC-CCcEeeEecCCCCceEEEEEe
Confidence            9995 466666666553 33444444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.04  E-value=0.056  Score=41.90  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=47.1

Q ss_pred             CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260          100 GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG  162 (174)
Q Consensus       100 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  162 (174)
                      |.+.-||+.+.+.........++..-.+...+..|+.|+.||.++-+|.++++.++++.++..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~  515 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence            678999999888776554443333223334578888999999999999999999988765543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.91  E-value=0.16  Score=36.02  Aligned_cols=96  Identities=9%  Similarity=0.095  Sum_probs=64.1

Q ss_pred             EEEEEcCCCCCCCeEEeec-CCCCEEEEEEeeCCCEEEEecCC-CcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCE
Q 042260           58 IRLFDVNSSSPQPVMSYDQ-HTNNVMAVGFQCDGNWMYSGSED-GTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTE  133 (174)
Q Consensus        58 i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~  133 (174)
                      +.+||..++.+........ +.......++.++++.++.|+.+ ..+.+||..+......-.  ....-...+..+++..
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            5789998887665443332 22334456778899999998765 589999988765433211  1222345667788888


Q ss_pred             EEEeeCC------CcEEEEeCCCCcc
Q 042260          134 LISGDQN------GNIRVWDLTANSC  153 (174)
Q Consensus       134 l~s~~~d------~~i~iwd~~~~~~  153 (174)
                      ++.|+.+      ..+.+||..+...
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eeeccccccccccceeeeecCCCCce
Confidence            8887643      3589999998754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.86  E-value=0.17  Score=35.61  Aligned_cols=122  Identities=7%  Similarity=0.069  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCceEEEecC-----CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCE-EEEecCCCcEEEEeCCCC
Q 042260           37 QVNRLEITPNKHYLAAAGN-----PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAP  110 (174)
Q Consensus        37 ~v~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~  110 (174)
                      ..+.+.+.++|.+.++...     ..-.+|-+.... ...............++|+++++. .++-+..+.|..||+...
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            4678889999887765421     122344443221 111112222345678999999985 466677889999997642


Q ss_pred             e----eE-----EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260          111 V----CQ-----MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ  160 (174)
Q Consensus       111 ~----~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  160 (174)
                      -    ..     ...........+++..+++..++...++.|..+|- .++...++.+|
T Consensus       210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             CceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence            1    11     01111234678999999998888778899999995 56666666544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.21  Score=33.38  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260           16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN   91 (174)
Q Consensus        16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   91 (174)
                      .|.+-|.. |.....+......+..-+|+|+|+.|+-..    ...+.+.+......   .....+........|+++|+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---eEEeeeecccccceecCCCC
Confidence            57777866 444444444456688889999998876432    22355556554422   22334566777788888888


Q ss_pred             EEEEec
Q 042260           92 WMYSGS   97 (174)
Q Consensus        92 ~l~t~~   97 (174)
                      .++...
T Consensus        96 ~i~~~~  101 (269)
T d2hqsa1          96 KLAFAL  101 (269)
T ss_dssp             EEEEEE
T ss_pred             eeeEee
Confidence            776644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.06  E-value=0.36  Score=34.42  Aligned_cols=137  Identities=9%  Similarity=0.082  Sum_probs=77.0

Q ss_pred             CCcEEEEECCCCce-eEEeecCC-------CCeEEEEE--cCCCc--eEEE---ecCCcEEEEEcCCCCCCCe--EEeec
Q 042260           14 DKTIKFWEAKSGRC-YRTIQYPD-------SQVNRLEI--TPNKH--YLAA---AGNPHIRLFDVNSSSPQPV--MSYDQ   76 (174)
Q Consensus        14 D~~v~vwd~~~~~~-~~~~~~~~-------~~v~~~~~--~~~~~--~~~~---~~d~~i~i~d~~~~~~~~~--~~~~~   76 (174)
                      .|.+.++|+++.+. ...+....       -...+++.  .+++.  +++.   .....|.+|++........  .....
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            48899999876532 22222111       12344544  23443  2232   1345688888865432211  11111


Q ss_pred             -CCCCEEEEEEeeCCCEEEEec-----------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-
Q 042260           77 -HTNNVMAVGFQCDGNWMYSGS-----------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-  137 (174)
Q Consensus        77 -~~~~v~~~~~~~~~~~l~t~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-  137 (174)
                       .......+....++.+++|-.                 ..+.+..||...  .......-...+.++++|+++.|+.+ 
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--~~~~~~~l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC--EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc--eEEEcCCCCccceeEECCCCCEEEEEe
Confidence             234577888888998888832                 123344455433  32223334568999999999877654 


Q ss_pred             eCCCcEEEEeCCCCc
Q 042260          138 DQNGNIRVWDLTANS  152 (174)
Q Consensus       138 ~~d~~i~iwd~~~~~  152 (174)
                      +..+.|+.|++....
T Consensus       225 t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         225 LLAHKIHVYEKHANW  239 (340)
T ss_dssp             GGGTEEEEEEECTTS
T ss_pred             CCCCeEEEEEeCCCc
Confidence            567789999998543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.37  Score=34.03  Aligned_cols=150  Identities=13%  Similarity=0.259  Sum_probs=89.7

Q ss_pred             cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC----CC
Q 042260            5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT----NN   80 (174)
Q Consensus         5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~   80 (174)
                      +.+||--+ ..++.+||+++.+.+.++..++.-+.- .|-... .++-..+..+.-|+++.. ..+...++.|.    .+
T Consensus        74 ~~IiALra-g~~LQiFnletK~klks~~~~e~VvfW-kWis~~-~L~lVT~taVYHW~~~g~-s~P~k~fdR~~~L~~~Q  149 (327)
T d1utca2          74 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFW-KWISLN-TVALVTDNAVYHWSMEGE-SQPVKMFDRHSSLAGCQ  149 (327)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEE-EESSSS-EEEEECSSEEEEEESSSS-CCCEEEEECCGGGTTCE
T ss_pred             CcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEE-EecCCC-EEEEEcCCceEEEcccCC-CCchhhhhhcccccCce
Confidence            44554444 568999999999999988877654433 343333 333334567888998543 34555555543    34


Q ss_pred             EEEEEEeeCCCEEEEec---C----CCcEEEEeCCCCee-----------------------E---------------Ee
Q 042260           81 VMAVGFQCDGNWMYSGS---E----DGTVKIWDLRAPVC-----------------------Q---------------ME  115 (174)
Q Consensus        81 v~~~~~~~~~~~l~t~~---~----dg~v~iwd~~~~~~-----------------------~---------------~~  115 (174)
                      +..-..+++.++++-.+   .    .|.+-+|..++...                       +               .+
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE  229 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  229 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence            55555555666544322   1    24556666543210                       0               00


Q ss_pred             ecc----------------------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260          116 YES----------------------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus       116 ~~~----------------------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ..+                      ..-..++.+++....+..-+.-|.|.+||++++.|.+.-+
T Consensus       230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence            000                      1113456666666677778888999999999999998755

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.43  Score=32.58  Aligned_cols=163  Identities=9%  Similarity=-0.024  Sum_probs=89.0

Q ss_pred             EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260            7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV   84 (174)
Q Consensus         7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~   84 (174)
                      +..+-...+.|.+.++........+...-.....++++|...++.-.  +....+|+-....................++
T Consensus        93 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gl  172 (263)
T d1npea_          93 IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL  172 (263)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEE
T ss_pred             EEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceE
Confidence            34444555666666665443322222223457889999866555433  2233455543222222222223334567789


Q ss_pred             EEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCCcceeec--Ccc
Q 042260           85 GFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTANSCSCEL--GLQ  160 (174)
Q Consensus        85 ~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~--~~~  160 (174)
                      ++.+.++.| ++-...+.|...|+...........-.....+++.  +..|. +-..++.|...|...++.....  ..+
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~  250 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC
Confidence            998766655 55567788999998765443333322334577775  34454 4445678999999887655332  222


Q ss_pred             cceeEEEEEee
Q 042260          161 YGLRTFLFYHQ  171 (174)
Q Consensus       161 ~~~~~~~~~~~  171 (174)
                      ..+---.++|+
T Consensus       251 ~~~~gi~v~~~  261 (263)
T d1npea_         251 TRLYGITIALS  261 (263)
T ss_dssp             CCCCCEEEECS
T ss_pred             CCcceEEEeCC
Confidence            33334455554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.47  Score=32.35  Aligned_cols=165  Identities=11%  Similarity=-0.006  Sum_probs=94.6

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNVM   82 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~   82 (174)
                      .+..+-...++|.+.++........+.........++++|... ++.+..  ...|.-.++....  .............
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~--~~~l~~~~~~~p~  167 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPN  167 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc--eecccccccceee
Confidence            3445555667788887766554444444445678889988544 443332  2334444554332  2222233345678


Q ss_pred             EEEEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260           83 AVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG  158 (174)
Q Consensus        83 ~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  158 (174)
                      ++++.+.++. ..+-...+.|...|+..........   .......+++. .+....+-..++.|...+..+++....+.
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            8998876654 4555667889888886543222221   12345667775 33434444567788888888776554432


Q ss_pred             -cccceeEEEEEeecC
Q 042260          159 -LQYGLRTFLFYHQDM  173 (174)
Q Consensus       159 -~~~~~~~~~~~~~~~  173 (174)
                       ....+.....|||.+
T Consensus       247 ~~~~~p~~i~v~~~~~  262 (266)
T d1ijqa1         247 ENLLSPEDMVLFHNLT  262 (266)
T ss_dssp             CSCSCCCCEEEESGGG
T ss_pred             cCCCCceEEEEECCcc
Confidence             224456778888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.17  E-value=0.21  Score=33.44  Aligned_cols=66  Identities=9%  Similarity=0.108  Sum_probs=44.5

Q ss_pred             EeeC--CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee----CCC--cEEEEeCCCCc
Q 042260           86 FQCD--GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD----QNG--NIRVWDLTANS  152 (174)
Q Consensus        86 ~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~d~--~i~iwd~~~~~  152 (174)
                      .+|+  |+.++-.+. +.|.+.|+........-.....+...+|+|+|+.|+-..    .+.  .|.+++...+.
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4566  888776644 468888998877654435556788899999999887542    222  36666666554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.16  E-value=0.96  Score=33.45  Aligned_cols=134  Identities=11%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecC--------------------------------------Cc
Q 042260           17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGN--------------------------------------PH   57 (174)
Q Consensus        17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d--------------------------------------~~   57 (174)
                      +.+.|.++.+....+.... ....++++++|++++. +.+                                      +.
T Consensus       175 ~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            5667888777766655433 4567888888886554 321                                      12


Q ss_pred             EEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEE-ecCCCcEEEEeCCCC------------eeEEeecccCcEEE
Q 042260           58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYS-GSEDGTVKIWDLRAP------------VCQMEYESRAAVNT  124 (174)
Q Consensus        58 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~------------~~~~~~~~~~~v~~  124 (174)
                      +.+-|.+.........+-.-......+..+|+|++++. +--+..+.+.|+++-            ......+..-...-
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            23334332110111111111233557788999998655 556889999998641            11222233445677


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260          125 VVLHPNQTELISGDQNGNIRVWDLTAN  151 (174)
Q Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (174)
                      .+|...++-..+-=-|.+|--||+...
T Consensus       334 t~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccCCCceEEEEeeccceEEEEecchh
Confidence            788887764445456899999999643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.29  E-value=1.5  Score=32.34  Aligned_cols=143  Identities=14%  Similarity=0.209  Sum_probs=83.1

Q ss_pred             cEE-EEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcC--CCceEEEecCC-------------------cEEEE
Q 042260            5 SVI-LATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITP--NKHYLAAAGNP-------------------HIRLF   61 (174)
Q Consensus         5 ~~~-l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~~~~~~d~-------------------~i~i~   61 (174)
                      ++. ++.-..+..|-+=|+.+.++...+..+ ...+..+...+  ...+++..+..                   .+...
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            344 455567888888888888876655433 33466666554  33455443221                   13456


Q ss_pred             EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC--------------------------------------CcEE
Q 042260           62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED--------------------------------------GTVK  103 (174)
Q Consensus        62 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d--------------------------------------g~v~  103 (174)
                      |..+.+.......   ......++++++|+++++.+.+                                      +.+.
T Consensus       179 D~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         179 DADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             ETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             ecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            6655433222222   2345577889999998887643                                      1223


Q ss_pred             EEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCC
Q 042260          104 IWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTA  150 (174)
Q Consensus       104 iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~  150 (174)
                      +-|.+..   .....+..+.....+.++|++++++++ .-+.++.++|++.
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            3343321   111222223345677899999997654 5688999999973

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.11  E-value=2.8  Score=29.88  Aligned_cols=140  Identities=11%  Similarity=0.243  Sum_probs=83.1

Q ss_pred             EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEc------CCCc-eEEEec----CCcEEEEEcCCCCCCCeEEe
Q 042260            6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT------PNKH-YLAAAG----NPHIRLFDVNSSSPQPVMSY   74 (174)
Q Consensus         6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~-~~~~~~----d~~i~i~d~~~~~~~~~~~~   74 (174)
                      .+++....++=|.+||++ |+.+..+.  .++++.+..-      ..+. +++++.    ...+.+|.+...... +...
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~-l~~~  116 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSI  116 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE-EEEC
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc-cccc
Confidence            456666677669999986 77776654  3456655443      2222 333442    135778877532211 1111


Q ss_pred             e-------cCCCCEEEEEE--eeC-CC-EEEEecCCCcEEEEeCC---CC----eeEEeecccCcEEEEEEccCCCEEEE
Q 042260           75 D-------QHTNNVMAVGF--QCD-GN-WMYSGSEDGTVKIWDLR---AP----VCQMEYESRAAVNTVVLHPNQTELIS  136 (174)
Q Consensus        75 ~-------~~~~~v~~~~~--~~~-~~-~l~t~~~dg~v~iwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~s  136 (174)
                      .       .....+-.++.  ++. +. +++....+|.+..|.+.   ..    ..+.++.....+-.|++.+....|+.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            1       11234556665  333 44 45666778898888763   22    33456667788999999998888988


Q ss_pred             eeCCCcEEEEeCC
Q 042260          137 GDQNGNIRVWDLT  149 (174)
Q Consensus       137 ~~~d~~i~iwd~~  149 (174)
                      +-++..|..++.+
T Consensus       197 sEE~~Giw~~~a~  209 (353)
T d1h6la_         197 AEEDEAIWKFSAE  209 (353)
T ss_dssp             EETTTEEEEEESS
T ss_pred             ecCccceEEEEec
Confidence            8787666555554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.04  E-value=5.7  Score=28.47  Aligned_cols=121  Identities=12%  Similarity=0.054  Sum_probs=66.5

Q ss_pred             CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE---eecCCCCEEEEEEeeC
Q 042260           13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS---YDQHTNNVMAVGFQCD   89 (174)
Q Consensus        13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~   89 (174)
                      .++.+..++...-........-..++..+.++|... ++...++.+-++++.......+..   --....++.+++|++.
T Consensus       103 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~-~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k  181 (381)
T d1xipa_         103 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTL-VILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR  181 (381)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEE-EEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred             eCCCEEEEEeeccccccccccccccccceecCCcee-EEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence            345577777655433333333345677888887643 334457778888887664333221   1123577889999988


Q ss_pred             CCEEEEecCCCc-EEEEeCCCCeeEE-eecccCcEEEEEEccCCCEEE
Q 042260           90 GNWMYSGSEDGT-VKIWDLRAPVCQM-EYESRAAVNTVVLHPNQTELI  135 (174)
Q Consensus        90 ~~~l~t~~~dg~-v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~  135 (174)
                      |+.++++..+.. ++- ++..+.... .......|.++.|.-+..+++
T Consensus       182 gkq~v~~~g~~~q~k~-~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         182 SFQSFAWRNGEMEKQF-EFSLPSELEELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             CEEEEEEETTEEEEEE-EECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             cEEEEEeCCCceeecc-CCCCccccCCCcCCCcceeEEEEecCceEEE
Confidence            888888754321 111 121111000 011234577888876665554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.51  E-value=5.2  Score=28.72  Aligned_cols=80  Identities=10%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecC----------------CcEEEEEcCCCCCCCeEEeecC
Q 042260           15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGN----------------PHIRLFDVNSSSPQPVMSYDQH   77 (174)
Q Consensus        15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d----------------~~i~i~d~~~~~~~~~~~~~~~   77 (174)
                      .+++++|+.+|+.+...- .......+.|.+++..+. +..+                ..+..+.+.+........+...
T Consensus       151 ~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~  229 (430)
T d1qfma1         151 VTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP  229 (430)
T ss_dssp             EEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             heeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccc
Confidence            359999999998764321 112235678988877554 3211                2466677766544444445443


Q ss_pred             C--CCEEEEEEeeCCCEEEE
Q 042260           78 T--NNVMAVGFQCDGNWMYS   95 (174)
Q Consensus        78 ~--~~v~~~~~~~~~~~l~t   95 (174)
                      .  ..+..+..++++++++.
T Consensus       230 d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         230 DEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             TCTTCEEEEEECTTSCEEEE
T ss_pred             cCCceEEeeeccCCcceeeE
Confidence            3  34666777888888654