Citrus Sinensis ID: 042271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccEEcccHHccccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEEEccccEEEcccccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHcccccccEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccccccccccccEEccccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccHHHHccccccccccccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEEcccccccccHHHcccccccEEEEccccccccccHHHccccccccEEEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccc
Coil and Loop (DISEMBL)
frkfknlehldmgevqVDVNTSFLQIvgeskpslKFLSLINSSKNTILDQGLRQLVHLQELYiggydlrgslpwclANMTSLQVLYASsneltgnispgLCELVLMRElhidnndlrgslplclanltslrvldvsdnqltqnisssplmhlTSIEELILsnnhffqspisleplfnlskrktfdseicaeteshynsltpkfQLTFIslsgyidggtfpkflyhqhdlknadlshlnlsgkfpnwlvENNANLERLLLADnslfgsfwmpihshqklatldvsnnffrghipveigtylpglmdlnlsrnafngsipssfaDMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNnslqghifsekfnltnLMTLQLDGNKFTGEILESLSKCYlleglylsdnhltgeiprwlgnlsalediimpnnnlegpipiefcqlnslkildlsnnsifrtlpscfspasieQLHLSKNKIEGRLEsiihdsphlvtldlscnslhgsipnqigrlp
Flexible Loop (DISEMBL)
frkfknlehldmgevqvDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETeshynsltpKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNslhgsipnqigrlp
Low Complexity Region (SEG)
FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVennanlerllladnSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Disordered region (IsUnstruct)
**********DMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH***********
Disordered Region (DISOPRED)
FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Disordered Region (DISEMBL)
FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Disordered Region (DISPRO)
**KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.872	0.397	0.351	4e-44
Q9FL28	1173	LRR receptor-like serine/	no	no	0.872	0.384	0.343	1e-42
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.872	0.361	0.304	2e-42
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.874	0.361	0.301	3e-42
P93194	1109	Receptor-like protein kin	N/A	no	0.912	0.425	0.299	3e-41
C0LGV1	1135	LRR receptor-like serine/	no	no	0.880	0.400	0.317	4e-41
Q9LHP4	1141	Receptor-like protein kin	no	no	0.891	0.404	0.308	4e-40
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.810	0.351	0.314	3e-39
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.920	0.432	0.299	2e-38
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.727	0.371	0.341	4e-37

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  179 bits (454), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 236/466 (50%), Gaps = 15/466 (3%)

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
           LQ L I      G +P  LAN+T LQ+L  S N+LTG I   L  L  ++ L +D N L+
Sbjct: 164 LQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQ 223

Query: 118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS-PISLEPLF 176
           G+LP  ++N +SL  L  S+N++   I ++    L  +E L LSNN+F  + P SL    
Sbjct: 224 GTLPSAISNCSSLVHLSASENEIGGVIPAA-YGALPKLEVLSLSNNNFSGTVPFSLFCNT 282

Query: 177 NLSKRK----TFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNA 232
           +L+  +     F   +  ET ++      +  L  + L      G FP +L +   LKN 
Sbjct: 283 SLTIVQLGFNAFSDIVRPETTANC-----RTGLQVLDLQENRISGRFPLWLTNILSLKNL 337

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
           D+S    SG+ P   + N   LE L LA+NSL G   + I     L  LD   N  +G I
Sbjct: 338 DVSGNLFSGEIPPD-IGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQI 396

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
           P  +G Y+  L  L+L RN+F+G +PSS  +++ LER+++  N L G  P  + A   SL
Sbjct: 397 PEFLG-YMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALT-SL 454

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
             L LS N   G +     NL+NL  L L GN F+GEI  S+   + L  L LS  +++G
Sbjct: 455 SELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSG 514

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASI 471
           E+P  L  L  ++ I +  NN  G +P  F  L SL+ ++LS+NS    +P  F     +
Sbjct: 515 EVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLL 574

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
             L LS N I G +   I +   L  L+L  N L G IP  + RLP
Sbjct: 575 VSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLP 620

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 242/518 (46%), Gaps = 67/518 (12%)

Query: 55  LVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114
           L++LQ L +    L G +P  + N +SL  L    N+LTG I   L  LV ++ L I  N
Sbjct: 239 LLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKN 298

Query: 115 DLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF-QSPISLE 173
            L  S+P  L  LT L  L +S+N L   IS   +  L S+E L L +N+F  + P S+ 
Sbjct: 299 KLTSSIPSSLFRLTQLTHLGLSENHLVGPISEE-IGFLESLEVLTLHSNNFTGEFPQSIT 357

Query: 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
            L NL+      + I  E  +    LT    L  +S    +  G  P  + +   LK  D
Sbjct: 358 NLRNLTVLTVGFNNISGELPADLGLLT---NLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 234 LSHLNLSGKFPNWL----------------------VENNANLERLLLADNSLFGSFWMP 271
           LSH  ++G+ P                         + N +NLE L +ADN+L G+    
Sbjct: 415 LSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL 474

Query: 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN---LSRNAFNGSIPSSFADMKMLE 328
           I   QKL  L VS N   G IP EIG     L DLN   L  N F G IP   +++ +L+
Sbjct: 475 IGKLQKLRILQVSYNSLTGPIPREIGN----LKDLNILYLHSNGFTGRIPREMSNLTLLQ 530

Query: 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG 388
            + +  N L G IPE M      L +L LSNN   G I +    L +L  L L GNKF G
Sbjct: 531 GLRMYSNDLEGPIPEEMFDMKL-LSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNG 589

Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIM----PNNNLEGPIPIEFCQ 444
            I  SL    LL    +SDN LTG IP  L  L++L+++ +     NN L G IP E  +
Sbjct: 590 SIPASLKSLSLLNTFDISDNLLTGTIPGEL--LASLKNMQLYLNFSNNLLTGTIPKELGK 647

Query: 445 LNSLKILDLSNN----SIFRTLPSC-------FS--------PASIEQ-------LHLSK 478
           L  ++ +DLSNN    SI R+L +C       FS        P  + Q       L+LS+
Sbjct: 648 LEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSR 707

Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
           N   G +     +  HLV+LDLS N+L G IP  +  L
Sbjct: 708 NSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANL 745

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 257/555 (46%), Gaps = 104/555 (18%)

Query: 55  LVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114
           L+HL    +   +L G +P  L+N+TSL+ L+  SN+LTG I   L  LV +R L I +N
Sbjct: 97  LIHLD---LSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDN 153

Query: 115 DLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEP 174
           +L G +P  L NL +L++L ++  +LT  I S  L  L  ++ LIL +N + + PI  E 
Sbjct: 154 ELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDN-YLEGPIPAE- 210

Query: 175 LFNLSKRKTF-------DSEICAETES---------HYNSLTPKF--------QLTFISL 210
           L N S    F       +  I AE              NSLT +         QL ++SL
Sbjct: 211 LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSL 270

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN--W---------------------- 246
                 G  PK L    +L+  DLS  NL+G+ P   W                      
Sbjct: 271 MANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKS 330

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
           +  NN NLE+L+L+   L G   + +   Q L  LD+SNN   G IP E    L  L DL
Sbjct: 331 ICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIP-EALFELVELTDL 389

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
            L  N   G++  S +++  L+ + + +N L G++P+ ++A    LE+L L  N   G I
Sbjct: 390 YLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA-LRKLEVLFLYENRFSGEI 448

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSK------------------------CYLLEG 402
             E  N T+L  + + GN F GEI  S+ +                        C+ L  
Sbjct: 449 PQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNI 508

Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
           L L+DN L+G IP   G L  LE +++ NN+L+G +P     L +L  ++LS+N +  T+
Sbjct: 509 LDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

Query: 463 -PSCFSPA-----------------------SIEQLHLSKNKIEGRLESIIHDSPHLVTL 498
            P C S +                       ++++L L KN++ G++   +     L  L
Sbjct: 569 HPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLL 628

Query: 499 DLSCNSLHGSIPNQI 513
           D+S N+L G+IP Q+
Sbjct: 629 DMSSNALTGTIPLQL 643

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 234/507 (46%), Gaps = 55/507 (10%)

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
           L++L++    L G +P  ++N  SL++L  S+N LTG I   L +LV +  L+++NN L 
Sbjct: 339 LKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLE 398

Query: 118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF-FQSPISLEPLF 176
           G+L   ++NLT+L+   +  N L   +    +  L  +E + L  N F  + P+ +    
Sbjct: 399 GTLSSSISNLTNLQEFTLYHNNLEGKVPKE-IGFLGKLEIMYLYENRFSGEMPVEIGNCT 457

Query: 177 NLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSH 236
            L +   + + +  E  S    L     LT + L      G  P  L + H +   DL+ 
Sbjct: 458 RLQEIDWYGNRLSGEIPSSIGRLK---DLTRLHLRENELVGNIPASLGNCHQMTVIDLAD 514

Query: 237 LNLSGKFPN----------WLVENNA-------------NLERLLLADNSLFGSFWMPIH 273
             LSG  P+          +++ NN+             NL R+  + N   GS   P+ 
Sbjct: 515 NQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSI-SPLC 573

Query: 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS 333
                 + DV+ N F G IP+E+G     L  L L +N F G IP +F  +  L  +DIS
Sbjct: 574 GSSSYLSFDVTENGFEGDIPLELGKS-TNLDRLRLGKNQFTGRIPRTFGKISELSLLDIS 632

Query: 334 YNQLTGEIPERMA-----------------------ARCFSLEILALSNNSLQGHIFSEK 370
            N L+G IP  +                         +   L  L LS+N   G + +E 
Sbjct: 633 RNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEI 692

Query: 371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
           F+LTN++TL LDGN   G I + +     L  L L +N L+G +P  +G LS L ++ + 
Sbjct: 693 FSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLS 752

Query: 431 NNNLEGPIPIEFCQLNSLK-ILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESI 488
            N L G IP+E  QL  L+  LDLS N+    +PS  S    +E L LS N++ G +   
Sbjct: 753 RNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQ 812

Query: 489 IHDSPHLVTLDLSCNSLHGSIPNQIGR 515
           I D   L  L+LS N+L G +  Q  R
Sbjct: 813 IGDMKSLGYLNLSYNNLEGKLKKQFSR 839

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 160/535 (29%), Positives = 248/535 (46%), Gaps = 63/535 (11%)

Query: 34  LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
           L+ LSL  +S      + L  + HL+ +Y  G  L GS+P  + NM+ L  L+   N+ +
Sbjct: 142 LRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFS 201

Query: 94  GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL--MH 151
           G +   L  +  ++EL++++N+L G+LP+ L NL +L  LDV +N L   I   PL  + 
Sbjct: 202 GPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAI---PLDFVS 258

Query: 152 LTSIEELILSNNHFFQS-PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
              I+ + LSNN F    P  L    +L +   F   +     S +  LT   +L  + L
Sbjct: 259 CKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLT---KLDTLYL 315

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN-----------WLVENN-------- 251
           +G    G  P  L     + +  L    L G+ P             L  NN        
Sbjct: 316 AGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLS 375

Query: 252 ----ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
                +L+ L L  N+L G   + +   ++L +L +  N F G IP ++G     L  L+
Sbjct: 376 IWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGAN-SSLEVLD 434

Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI- 366
           L+RN F G IP +    K L+R+ + YN L G +P  +   C +LE L L  N+L+G + 
Sbjct: 435 LTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGG-CSTLERLILEENNLRGGLP 493

Query: 367 -FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALE 425
            F EK    NL+   L GN FTG I  SL     +  +YLS N L+G IP  LG+L  LE
Sbjct: 494 DFVEK---QNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLE 550

Query: 426 DIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF-SPASIEQLHLSKNKIEGR 484
            + + +N L+G +P E    + L  LD S+N +  ++PS   S   + +L L +N   G 
Sbjct: 551 HLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGG 610

Query: 485 LESIIHDS-----------------------PHLVTLDLSCNSLHGSIPNQIGRL 516
           + + +  S                         L +L+LS N L+G +P  +G+L
Sbjct: 611 IPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLGKL 665

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 156/491 (31%), Positives = 238/491 (48%), Gaps = 36/491 (7%)

Query: 52  LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI 111
           +     LQ+L I   +L G++   + + + L V+  SSN L G I   L +L  ++EL +
Sbjct: 102 ISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCL 161

Query: 112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPIS 171
           ++N L G +P  L +  SL+ L++ DN L++N+    L  ++++E +    N      I 
Sbjct: 162 NSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLE-LGKISTLESIRAGGNSELSGKIP 220

Query: 172 LEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKN 231
            E + N    K         + S   SL    +L  +S+   +  G  PK L +  +L N
Sbjct: 221 -EEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELIN 279

Query: 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291
             L   +LSG  P  L +   NLE++LL  N+L G     I   + L  +D+S N+F G 
Sbjct: 280 LFLYDNDLSGTLPKELGKLQ-NLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGT 338

Query: 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA----- 346
           IP   G  L  L +L LS N   GSIPS  ++   L +  I  NQ++G IP  +      
Sbjct: 339 IPKSFGN-LSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL 397

Query: 347 ------------------ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG 388
                             A C +L+ L LS N L G + +  F L NL  L L  N  +G
Sbjct: 398 NIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISG 457

Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL 448
            I   +  C  L  L L +N +TGEIP+ +G L  L  + +  NNL GP+P+E      L
Sbjct: 458 VIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQL 517

Query: 449 KILDLSNNSIFRTLP-SCFSPASIEQLHLSKNKIEGRLESIIHDS-PHLVTLD---LSCN 503
           ++L+LSNN++   LP S  S   ++ L +S N + G+    I DS  HL++L+   LS N
Sbjct: 518 QMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGK----IPDSLGHLISLNRLILSKN 573

Query: 504 SLHGSIPNQIG 514
           S +G IP+ +G
Sbjct: 574 SFNGEIPSSLG 584

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 234/493 (47%), Gaps = 32/493 (6%)

Query: 48  LDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR 107
           L + L     LQ+L I G +L G+LP  L +   L+VL  SSN L G+I   L +L  + 
Sbjct: 97  LPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLE 156

Query: 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF- 166
            L +++N L G +P  ++  + L+ L + DN LT +I +  L  L+ +E + +  N    
Sbjct: 157 TLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTE-LGKLSGLEVIRIGGNKEIS 215

Query: 167 -QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH 225
            Q P  +    NL+     ++ +     S    L    +L  +S+   +  G  P  L +
Sbjct: 216 GQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLK---KLETLSIYTTMISGEIPSDLGN 272

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
             +L +  L   +LSG  P   +     LE+L L  NSL G     I +   L  +D+S 
Sbjct: 273 CSELVDLFLYENSLSGSIPRE-IGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSL 331

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N   G IP  IG  L  L +  +S N F+GSIP++ ++   L ++ +  NQ++G IP  +
Sbjct: 332 NLLSGSIPSSIG-RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSEL 390

Query: 346 A-----------------------ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLD 382
                                   A C  L+ L LS NSL G I S  F L NL  L L 
Sbjct: 391 GTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLI 450

Query: 383 GNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF 442
            N  +G I + +  C  L  L L  N +TGEIP  +G+L  +  +   +N L G +P E 
Sbjct: 451 SNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEI 510

Query: 443 CQLNSLKILDLSNNSIFRTLPSCFSPAS-IEQLHLSKNKIEGRLESIIHDSPHLVTLDLS 501
              + L+++DLSNNS+  +LP+  S  S ++ L +S N+  G++ + +     L  L LS
Sbjct: 511 GSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILS 570

Query: 502 CNSLHGSIPNQIG 514
            N   GSIP  +G
Sbjct: 571 KNLFSGSIPTSLG 583

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 153/487 (31%), Positives = 220/487 (45%), Gaps = 68/487 (13%)

Query: 68  LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANL 127
           L GSLP  +     L  L  ++N  +G I   + +  +++ L + +N L GS+P  L   
Sbjct: 317 LSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS 376

Query: 128 TSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS-PISLEPLFNLSKRKTFDS 186
            SL  +D+S N L+  I        +S+ EL+L+NN    S P   E L+          
Sbjct: 377 GSLEAIDLSGNLLSGTIEEV-FDGCSSLGELLLTNNQINGSIP---EDLW---------- 422

Query: 187 EICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
                          K  L  + L      G  PK L+   +L     S+  L G  P  
Sbjct: 423 ---------------KLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAE 467

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG--------- 297
            + N A+L+RL+L+DN L G     I     L+ L+++ N F+G IPVE+G         
Sbjct: 468 -IGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLD 526

Query: 298 --------------TYLPGLMDLNLSRNAFNGSIPSS---------FADMKMLER---VD 331
                         T L  L  L LS N  +GSIPS            D+  L+     D
Sbjct: 527 LGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFD 586

Query: 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL 391
           +SYN+L+G IPE +   C  L  ++LSNN L G I +    LTNL  L L GN  TG I 
Sbjct: 587 LSYNRLSGPIPEELG-ECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIP 645

Query: 392 ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451
           + +     L+GL L++N L G IP   G L +L  + +  N L+GP+P     L  L  +
Sbjct: 646 KEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHM 705

Query: 452 DLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
           DLS N++   L S  S    +  L++ +NK  G + S + +   L  LD+S N L G IP
Sbjct: 706 DLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIP 765

Query: 511 NQIGRLP 517
            +I  LP
Sbjct: 766 TKICGLP 772

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 153/511 (29%), Positives = 239/511 (46%), Gaps = 35/511 (6%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
           SL+ L L  +  + ++   L  ++ L++LY+    L GS+P  + N++SLQ L   SN L
Sbjct: 116 SLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNL 175

Query: 93  TGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT----------Q 142
           TG I P + +L  +R +    N   G +P  ++   SL+VL +++N L           Q
Sbjct: 176 TGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQ 235

Query: 143 NISSSPLMH-------------LTSIEELILSNNHFFQS-PISLEPLFNLSKRKTFDSEI 188
           N++   L               ++ +E L L  N+F  S P  +  L  + +   + +++
Sbjct: 236 NLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQL 295

Query: 189 CAETESHYNSLTPKFQLTFI--SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
             E      +L    ++ F    L+G+I     PK   H  +LK   L    L G  P  
Sbjct: 296 TGEIPREIGNLIDAAEIDFSENQLTGFI-----PKEFGHILNLKLLHLFENILLGPIPRE 350

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
           L E    LE+L L+ N L G+    +     L  L + +N   G IP  IG Y      L
Sbjct: 351 LGELTL-LEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFY-SNFSVL 408

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
           ++S N+ +G IP+ F   + L  + +  N+L+G IP  +   C SL  L L +N L G +
Sbjct: 409 DMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT-CKSLTKLMLGDNQLTGSL 467

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
             E FNL NL  L+L  N  +G I   L K   LE L L++N+ TGEIP  +GNL+ +  
Sbjct: 468 PIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVG 527

Query: 427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRL 485
             + +N L G IP E     +++ LDLS N     +         +E L LS N++ G +
Sbjct: 528 FNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEI 587

Query: 486 ESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
                D   L+ L L  N L  +IP ++G+L
Sbjct: 588 PHSFGDLTRLMELQLGGNLLSENIPVELGKL 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 203/431 (47%), Gaps = 55/431 (12%)

Query: 85  LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNI 144
           L AS N L+GN++  L  LV +  L +  N  +GSLP    NL  LR L +S N LT  +
Sbjct: 145 LNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGEL 204

Query: 145 SSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQ 204
            S  L  L S+E  IL  N  F+ PI                              P+F 
Sbjct: 205 PSV-LGQLPSLETAILGYNE-FKGPIP-----------------------------PEF- 232

Query: 205 LTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
                  G I+             LK  DL+   LSG+ P+ L +  + LE LLL +N+ 
Sbjct: 233 -------GNIN------------SLKYLDLAIGKLSGEIPSELGKLKS-LETLLLYENNF 272

Query: 265 FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 324
            G+    I S   L  LD S+N   G IP+EI T L  L  LNL RN  +GSIP + + +
Sbjct: 273 TGTIPREIGSITTLKVLDFSDNALTGEIPMEI-TKLKNLQLLNLMRNKLSGSIPPAISSL 331

Query: 325 KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN 384
             L+ +++  N L+GE+P  +      L+ L +S+NS  G I S   N  NL  L L  N
Sbjct: 332 AQLQVLELWNNTLSGELPSDLGKNS-PLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNN 390

Query: 385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 444
            FTG+I  +LS C  L  + + +N L G IP   G L  L+ + +  N L G IP +   
Sbjct: 391 TFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISD 450

Query: 445 LNSLKILDLSNNSIFRTLPSC-FSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
             SL  +D S N I  +LPS   S  +++   ++ N I G +     D P L  LDLS N
Sbjct: 451 SVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSN 510

Query: 504 SLHGSIPNQIG 514
           +L G+IP+ I 
Sbjct: 511 TLTGTIPSSIA 521

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
255581263	912	serine-threonine protein kinase, plant-t	0.895	0.507	0.524	1e-118
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.965	0.340	0.405	3e-88
224142481	781	predicted protein [Populus trichocarpa]	0.798	0.528	0.460	2e-86
224102049	577	predicted protein [Populus trichocarpa]	0.758	0.679	0.466	6e-85
224073436	1014	predicted protein [Populus trichocarpa]	0.874	0.445	0.408	2e-81
224073422	969	predicted protein [Populus trichocarpa]	0.963	0.513	0.405	2e-81
224134891	953	predicted protein [Populus trichocarpa]	0.870	0.472	0.406	7e-80
224120284	929	predicted protein [Populus trichocarpa]	0.938	0.522	0.390	2e-79
359484714	862	PREDICTED: probable LRR receptor-like se	0.887	0.532	0.414	4e-79
224123984	1016	predicted protein [Populus trichocarpa]	0.972	0.495	0.392	9e-79

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/473 (52%), Positives = 315/473 (66%), Gaps = 10/473 (2%)

Query: 47  ILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNIS--PGLCELV 104
           I  Q L    +L+ELY+   +L  S    +  MTSL+VL  S   LTG +    GLCEL+
Sbjct: 168 IQAQDLPNFENLEELYLDKIELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELI 227

Query: 105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164
            +R L + +N+  G LP CL+NLTSL++LD+S NQ   +IS+SPL  L S+ +L +SNNH
Sbjct: 228 HLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNH 287

Query: 165 FFQSPISLEPLFNLSKRKTFDSE---ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPK 221
           F Q P SL P FN S  K    +   I  E E H     P+FQL  I  SGY   GTFP 
Sbjct: 288 F-QVPFSLGPFFNHSNLKHIRGQNNAIYLEAELHS---APRFQLISIIFSGYGICGTFPN 343

Query: 222 FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATL 281
           FLYHQ++L+  DLSHL+L G+FPNWL+ NN  LE L L +NSL G   +P+H H  L  L
Sbjct: 344 FLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLAL 403

Query: 282 DVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEI 341
           D+SNN    HIP+EIGT+LP L  LN+S N F+GSIPSSF +M  L  +D+S NQL+G I
Sbjct: 404 DISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSI 463

Query: 342 PERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE 401
           PE +A  CFSL  L LSNNSLQG +FS++FNLTNL  L+LD N F+G I +SLSK   L 
Sbjct: 464 PEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKS-ALS 522

Query: 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461
            + LSDNHL+G IP W+GNLS L+++I+ NN L+GPIP+EFCQL+ L++LDL+NNS+   
Sbjct: 523 IMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGI 582

Query: 462 LPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
           LPSC SP+SI  +HLS+N IEG   +    S  LVTLDLS N + G IP  IG
Sbjct: 583 LPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIG 635

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 308/543 (56%), Gaps = 44/543 (8%)

Query: 6    NLEHLDMGEVQVDVNTSFLQIVG-ESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIG 64
            NLE LD+ +  ++   SF+   G +S   L+ L L  +  N    + L +L  L+ELY+G
Sbjct: 619  NLEELDLSKNDLE---SFITTTGLKSLRKLRVLHLETNDFNISTLKSLGRLSLLKELYLG 675

Query: 65   GYDLRGSLPWCLAN-------------------------MTSLQVLYASSNELTGNISP- 98
            G  L GS+     N                         MTSL+ L   SN + G+ +  
Sbjct: 676  GNKLEGSVTLRELNNLRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTAL 735

Query: 99   -GLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEE 157
             GLC+L  ++EL + +N   GS+  CL NLTSLR LD+S N+ + N+ SS    L  +E 
Sbjct: 736  QGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEF 795

Query: 158  LILSNNHFFQSPISLEPLFNLSKRKTFD--SEICAET----ESHYNSLTPKFQLTFISLS 211
            L LS+N F   P    P+ + +K    +    IC       ES   +  P FQL    LS
Sbjct: 796  LSLSHNVFQTFP----PISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLS 851

Query: 212  GYI-DGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
              I   G+ P FL++QHDL+  DLS+ +L   FP WL++NN  LE L L +NSL G F +
Sbjct: 852  SCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHL 911

Query: 271  PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330
            P   +   + +D+SNN  +G +P  I   LP LM LN+SRN+F GSIPS F  M+ L  +
Sbjct: 912  PYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFL 970

Query: 331  DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI 390
            D+S N  TG IPE +A  C SLE L LS N L G +F    NL +L  L+LD N F+G+I
Sbjct: 971  DLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKI 1030

Query: 391  LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
             + LS    LE LY+S N ++G++P W+GN+S L  ++MPNN+LEGPIP+EFC L++L++
Sbjct: 1031 PD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALEL 1089

Query: 451  LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
            LDLSNN++  +LPSCFSP+ +  +HL +N + G L      S  L TLD+  N+L G IP
Sbjct: 1090 LDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIP 1149

Query: 511  NQI 513
            + I
Sbjct: 1150 DWI 1152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 204/443 (46%), Positives = 270/443 (60%), Gaps = 30/443 (6%)

Query: 76  LANMTSLQVLYASSNELTGNIS-PGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLD 134
           L  ++SL+ L   +N+L G+I   GLCEL  ++EL I  NDL G LP CL NL +L+VLD
Sbjct: 48  LEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLD 106

Query: 135 VSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD---SEICAE 191
           +S N  + NIS S +  LTSI +L LS+NHF Q PISL P FNLS  K  +   +EI   
Sbjct: 107 ISFNNFSGNISLSRIGSLTSIRDLKLSDNHF-QIPISLGPFFNLSNLKNLNGDHNEIYES 165

Query: 192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENN 251
           TE  +N L P+FQL  +SL+ +  GGTFPKFLY+QHDL+  DLSH+ + G+FP+WL++NN
Sbjct: 166 TELVHN-LIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNN 224

Query: 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRN 311
             LE L L ++SL GS  +P  SH  L+ LD+S N  +  IP +IG Y P L  LNLSRN
Sbjct: 225 TKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRN 284

Query: 312 AFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF 371
            F+GSIPSS ++M  L  +D+S N L+G IPE++   C SL  L LSNN L+G  F   F
Sbjct: 285 YFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSF 344

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
           NL  L  L L GN+ TG +  SLS    LE L +S N+L+G+IPRW+G +S+L+ + +  
Sbjct: 345 NLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSE 404

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491
           NNL G +P  FC                       S  ++ +++LSKNK+EG L   +  
Sbjct: 405 NNLYGSLPSSFC-----------------------SSRTMTEVYLSKNKLEGSLIGALDG 441

Query: 492 SPHLVTLDLSCNSLHGSIPNQIG 514
              L  LDLS N   G IP  IG
Sbjct: 442 CLSLNRLDLSHNYFGGGIPESIG 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 196/420 (46%), Positives = 256/420 (60%), Gaps = 28/420 (6%)

Query: 100 LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELI 159
           LCEL  ++EL I  N++ GSLP C +NLT+L+ LD+S N  T NIS SP+  LTSI +L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 160 LSNNHFFQSPISLEPLFNLSKRKTFD---SEICAETESHYNSLTPKFQLTFISLSGYIDG 216
           LS+NHF Q PISL P FNLS  K  +   +E+   TE  +N L P+FQL  +SL+    G
Sbjct: 67  LSDNHF-QIPISLGPFFNLSNLKNLNGDRNELYESTELVHN-LIPRFQLQRLSLAYTGSG 124

Query: 217 GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQ 276
           GTF K LY+QHDL+  DLSH+ ++G+FP+WL++NN  LE L L +NS  GSF +  HS  
Sbjct: 125 GTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
           +L+ LD+S N     IP EIG   P L+ LNLSRN F GSIPSS ++M  LE +D+S N+
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK 396
           L+G IPE +   C SL  L LSNN L+G  F   FNL  L  L L GN+ TG +  SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 397 CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
              LE L +S N+L+G+IPRW+ N+S+LE + +  NNL G +P  FC             
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFC------------- 351

Query: 457 SIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
                     S   + +++LSKNK+EG L         L  LDLS NSL G IP ++G L
Sbjct: 352 ----------SSMMMTEVYLSKNKLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYL 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/463 (40%), Positives = 275/463 (59%), Gaps = 11/463 (2%)

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDNNDL 116
           L+ELY+    L  +    +  +  L+VL  +  +L G + + G CEL  +R+L +  N+L
Sbjct: 226 LEELYLDRTSLPINFLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNNL 285

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
            GSLP CL NL+SL++LDVS+NQ T NI+S PL +LTS+E L LSNN  F+ PIS++P  
Sbjct: 286 GGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNN-LFEVPISMKPFM 344

Query: 177 NLSKRKTFDSE--ICAETESHYNSLTPKFQLTFISLSGYIDG--GTFPKFLYHQHDLKNA 232
           N S  K F SE        + +++L PKFQL F  LS   +      P FLY+Q+D++  
Sbjct: 345 NHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVL 404

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
           DLSH N++  FP+WL++NN  LE+L L++NS  G+  +  H +  +  LD+SNN   G I
Sbjct: 405 DLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQI 464

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
           P +I    P +  L ++ N F G IPS   ++  L+ +D+S NQL+    E++    F  
Sbjct: 465 PKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTTIWF-- 522

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY-LLEGLYLSDNHLT 411
             L LSNN+L G + +  FN + L  L L GN F G+I + L   + +   L LSDN  +
Sbjct: 523 --LKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFS 580

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI 471
           G +PRWL N + L  I +  N  +GPI  +FC+LN L+ LDLS N++   +PSCFSP  I
Sbjct: 581 GMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQI 640

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
             +HLS+N++ G L    +++  LVT+DL  N+  GS PN IG
Sbjct: 641 THVHLSENRLSGPLTYGFYNNSSLVTMDLRDNNFTGSFPNWIG 683

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 299/523 (57%), Gaps = 25/523 (4%)

Query: 4   FKNLEHLDMGEVQVDVNT----SFLQIVGESKPSLKFLSLINSSKNTILDQG-LRQLVHL 58
           F +L+ LD+   Q+  +      FLQ    S  SLK LSL    K+T L QG       L
Sbjct: 150 FSSLKSLDLSGNQLTASGLRKLDFLQ----SLRSLKTLSL----KDTNLSQGTFFNSSTL 201

Query: 59  QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDNNDLR 117
           +EL++    L  +       + +L+VL     +L G + + G CEL  +++L +  N+  
Sbjct: 202 EELHLDNTSLPINFLQNTRALPALKVLSVGECDLHGTLPAQGWCELKNLKQLDLARNNFG 261

Query: 118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFN 177
           G+LP CL NL+SL +LDVS+NQ T NI S PL +L S+E L LSNN  F+ P S++P  N
Sbjct: 262 GALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNN-LFEVPTSMKPFMN 320

Query: 178 LSKRKTFDSE--ICAETESHYNSLTPKFQLTFISLSGYIDGGT--FPKFLYHQHDLKNAD 233
            S  K F SE        + +++L PKFQL F+SL    +      P FLY+Q+DL+  D
Sbjct: 321 HSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLD 380

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
           LSH N++G FP+WL++NN  +E+L L+DNS  G+  +P H +  +  LD+SNN     IP
Sbjct: 381 LSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIP 440

Query: 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
            +I   LP L  L + +N F G IPS   ++  L  +D+S NQL+    E +     +L 
Sbjct: 441 KDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT----TLM 496

Query: 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLTG 412
            L LSNN+L G I    FN + L  L L+GN F G+IL  SL +  +   L LS+N  +G
Sbjct: 497 FLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSG 556

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLSNNSIFRTLPSCFSPASI 471
            +PRW  N + LE I +  N+ +GPIP + FC+ + L+ LDLS N++   +PSCFSP  I
Sbjct: 557 MLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQI 616

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
             LHLSKN++ G L    ++S  LVT+DL  NS   SIPN IG
Sbjct: 617 THLHLSKNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIG 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 189/465 (40%), Positives = 276/465 (59%), Gaps = 15/465 (3%)

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDNNDL 116
           L+ELY+    LR +    +  + +L+VL  +  +L G + + G CEL  +++L +  N+ 
Sbjct: 175 LEELYLDNTSLRINFLQNIGALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLARNNF 234

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
            GSLP CL NL+SL++LDVS+NQ T N +S PL +L S+E L+LSNN  F+ PIS++P  
Sbjct: 235 GGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNN-LFEVPISMKPFL 293

Query: 177 NLSKRKTFDSE---ICAETESHYNSLTPKFQLTFISLSGYIDG---GTFPKFLYHQHDLK 230
           N S  K F SE   +  E  + +++L PKFQL F  LS           P FLY+Q DL+
Sbjct: 294 NHSSLKFFSSENNRLVTEPVA-FDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLR 352

Query: 231 NADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRG 290
             DLSH N++G FP+WL++NN  LE+L L+ N   G+  +  H +  +  LD+SNN   G
Sbjct: 353 ALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSG 412

Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
            I  +I    P L  L +++N F G IPS   ++  L  +D+S NQL+    E++     
Sbjct: 413 QISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQL----- 467

Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNH 409
           ++ +L LSNNSL G I +  FN +    L L+GN F+G+I +  L     L  L LS+N 
Sbjct: 468 TIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQ 527

Query: 410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA 469
            +G +PR   N + L  + +  N+ +GPIP +FC+L  L+ LDLS N++   +PSCFSP 
Sbjct: 528 FSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPP 587

Query: 470 SIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
            +  +HLSKN++ G L     +S +LVT+DL  NSL GSIPN IG
Sbjct: 588 PLTHVHLSKNRLSGPLTYGFFNSSYLVTMDLRDNSLTGSIPNWIG 632

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 211/540 (39%), Positives = 297/540 (55%), Gaps = 55/540 (10%)

Query: 2   RKFKNLEHLDMGEVQVD---VNTSFLQIVGESKPSLKFLSLINSS-KNTILDQGLRQLVH 57
           R F NL  + +  +  +   ++   LQ + +  P+LK L L N++ + TIL Q L  L +
Sbjct: 229 RGFGNLSRVRLFNITANGRRISLPLLQSLAK-LPNLKTLDLGNNNFEGTILAQALPSLKN 287

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI--SPGLCELVLMRELHIDNND 115
           L +L +    L  S    +  +T+L  L  +   L+G+I  + GLCEL  ++ L I NN 
Sbjct: 288 LHKLDLSSSTLDNSFLQTIGRITTLTSLKLNGCRLSGSIPIAEGLCELKHLQSLDISNNS 347

Query: 116 LRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPL 175
           L G LP CLANLTSL+ +D+S N    +ISSSPL+ LTSI+EL LS+N+F Q PISL   
Sbjct: 348 LTGVLPKCLANLTSLKQIDLSSNHFGGDISSSPLITLTSIQELRLSDNNF-QIPISLRSF 406

Query: 176 FNLSKRKTF---DSEICAETESHYNSLTPKFQLTFISLSGYIDGGT--FPKFLYHQHDLK 230
            N S+ K F   ++EICAE E H  +L PKFQL  + LSG   GG   FPKFL++QH+L+
Sbjct: 407 SNHSELKFFFGYNNEICAELEEH--NLIPKFQLQRLHLSGQAYGGALPFPKFLFYQHNLR 464

Query: 231 NADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRG 290
               S++ + G  PNWL+ENN NL  L L +NSL G F +PIH H  L+ LD+S+N    
Sbjct: 465 EIYFSNMRMRGGVPNWLLENNTNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDS 524

Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
           HIP EIG Y P L  L++S+N FNG IPSSF  M  L  +D+S N ++G++P      CF
Sbjct: 525 HIPTEIGAYFPSLTFLSMSKNHFNGIIPSSFGYMSSLLVLDLSENNISGKLPS-----CF 579

Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
           S   L         H++             L  NK  G + ++  K + L  L LS N L
Sbjct: 580 SSLPLV--------HVY-------------LSQNKLQGSLEDAFHKSFELITLDLSHNQL 618

Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS 470
           TG I  W+G  S +  +++  NNLEG IP + C+L+ L  +DLS+N     +  C    S
Sbjct: 619 TGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSHNKFSGHILPCLRFRS 678

Query: 471 ---------IEQLHLSKNKIEGRLESIIHDSP-----HLVTLDLSCNSLHGSIPNQIGRL 516
                        +L +  +E   +S+ +  P      +  +DLSCN+L G IP +IG L
Sbjct: 679 SIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILNIMSGMDLSCNNLTGEIPPEIGNL 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 270/473 (57%), Gaps = 14/473 (2%)

Query: 51  GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNIS-PGLCELVLMREL 109
           GL+ L  L+ L +    L G +P  ++ ++ L+ L    N L G++S  GLC+L L   L
Sbjct: 89  GLKYLSRLEVLNLKWNSLMGGIPPIISTLSHLKSLTLRYNNLNGSLSMEGLCKLNL-EAL 147

Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
            +  N   GSLP CL NLTSLR+LD+S+N  +  I SS   +L S+E + LS+NHF +  
Sbjct: 148 DLSRNGFEGSLPACLNNLTSLRLLDLSENDFSGTIPSSLFSNLKSLEYISLSDNHF-EGS 206

Query: 170 ISLEPLFNLSKRKTFD-----SEICAETESHYNSLTPKFQLTFISLSGYI---DGGTFPK 221
           I    LFN S+   FD       +  ETE+   S  P FQL  + LS           P 
Sbjct: 207 IHFGSLFNHSRLVVFDLASNNKYLKVETENPIWSF-PLFQLKILRLSNCTLNWPSWVLPS 265

Query: 222 FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHS-HQKLAT 280
           FL  Q+DL+  DLSH N++G  P WL++NN  LE L    NSL G   +P +S H  +  
Sbjct: 266 FLPSQYDLRMVDLSHNNITGDIPTWLLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLL 325

Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE 340
           LD S+N   G +P  IG+  PGL  LNLSRNA  G+IPSS  DM+ L  +D+S N L+G+
Sbjct: 326 LDFSSNCIHGELPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQ 385

Query: 341 IPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLL 400
           +PE M   C SL +L LSNNSL G +   K NLT+L  L LD N F+GEI         L
Sbjct: 386 LPEHMMMGCISLLVLKLSNNSLHGTL-PTKSNLTDLFFLSLDNNNFSGEISRGFLNSSSL 444

Query: 401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR 460
           + L +S N L G+IP W+G+ S L  + +  N+L+G +P   C+LN L+ LDLS+N I  
Sbjct: 445 QALDISSNSLWGQIPNWIGDFSVLSTLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGP 504

Query: 461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
           TLP C +   ++ LHL  N++ G +  ++ ++  LVTL+L  N L G IP+ I
Sbjct: 505 TLPPCANLKKMKFLHLENNELSGPIPHVLSEATSLVTLNLRDNKLSGPIPHWI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 205/522 (39%), Positives = 297/522 (56%), Gaps = 19/522 (3%)

Query: 3   KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINS--SKNTILDQGLRQLVHLQE 60
           + K LE+L +   Q + ++ F  + G S  SLK L L  +  + +T ++        L+E
Sbjct: 188 RLKKLENLHLRGNQYN-DSIFSSLTGFS--SLKSLDLSYNMLTGSTSINGTFFNSTTLEE 244

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDNNDLRGS 119
           LY+ G  L  +    +  + +L+VL A   +L G + + GLC L  + +L +  N+L GS
Sbjct: 245 LYLDGSSLPLNFLHNIGVLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLEGS 304

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLS 179
           LP C  NL+SL++LDVS NQ   NI+SSPL +L S+E + LSNNHF Q PIS++P  N S
Sbjct: 305 LPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHF-QVPISMKPFMNHS 363

Query: 180 KRKTFDSE---ICAETESHYNSLTPKFQLTFISLSGYIDGG---TFPKFLYHQHDLKNAD 233
             + F S+   +  E  S ++ L PKFQL F SLS           P FLY+QHDL+  D
Sbjct: 364 SLRFFSSDNNRLVTEPMS-FHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLD 422

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
           LS  +  G FP+WL++NN  LE+L L +NS FG+  +  H +  +  +D+SNN   G IP
Sbjct: 423 LSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIP 482

Query: 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
             I      L  L +++N   G IPS   +   L  +D+S NQL+    E+      +L 
Sbjct: 483 KNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLT 538

Query: 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKC-YLLEGLYLSDNHLTG 412
            L LSNN+L G + +   N + L  L L  N F G+I +  S    +   L LS+N  +G
Sbjct: 539 FLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSG 598

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIE 472
            +PRW  NL+ +  I +  N+  GPIP+EFC+L+ LK LDLS+N++F ++PSCF+P  I 
Sbjct: 599 MLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHIT 658

Query: 473 QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
            +HLSKN++ G L    ++S  LVTLDL  N+  GSI N IG
Sbjct: 659 HVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIG 700

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.969	0.519	0.357	9.2e-68
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.955	0.554	0.354	8.9e-67
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.965	0.460	0.365	1.1e-65
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.967	0.5	0.362	1.6e-65
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.901	0.477	0.368	1.3e-62
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.959	0.546	0.344	4.3e-57
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.874	0.397	0.344	2.6e-48
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.969	0.535	0.297	7.1e-46
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.893	0.393	0.300	1.2e-44
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.970	0.400	0.282	3.8e-44

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 190/531 (35%), Positives = 277/531 (52%)

Query:     2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQEL 61
             RK + LE LD+   + + N+ F  +   +  +  FL   N+   +   + LR L +L+ L
Sbjct:   129 RKLRKLEILDLASNKFN-NSIFHFLSAATSLTTLFLRS-NNMDGSFPAKELRDLTNLELL 186

Query:    62 YIGGYDLRGSLPWC-LANMTSLQVLYASSNELTGN--------------ISPGLCELVLM 106
              +      GS+P   L+++  L+ L  S NE +G+              I  G+CEL  M
Sbjct:   187 DLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNM 246

Query:   107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
             +EL +  N L G LP CL +LT LRVLD+S N+LT  + SS L  L S+E L L +N F 
Sbjct:   247 QELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDF- 304

Query:   167 QSPISLEPLFNLSKRKTFDSEICAETES----HYNSLTPKFQLTFISLSGYIDGGTFPKF 222
             +   S   L NLS       ++C+++ S      +S  PKFQL+ I+L    +    P F
Sbjct:   305 EGSFSFGSLANLSNLMVL--KLCSKSSSLQVLSESSWKPKFQLSVIALRS-CNMEKVPHF 361

Query:   223 LYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLD 282
             L HQ DL++ DLS  N+SGK P+WL+              +LF SF +P  +H  L  LD
Sbjct:   362 LLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQN-NLFTSFQIPKSAHN-LLFLD 419

Query:   283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
             VS N F    P  IG   P L  LN S+N F  ++PSS  +M  ++ +D+S N   G +P
Sbjct:   420 VSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLP 479

Query:   343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEG 402
                   C+S+ IL LS+N L G IF E  N TN++ L +D N FTG+I + L     LE 
Sbjct:   480 RSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLEL 539

Query:   403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
             L +S+N+LTG IP W+G L +L  +++ +N L+G IP+     +SL++LDLS NS+   +
Sbjct:   540 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVI 599

Query:   463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
             P      +   L L  NK+ G +   +  +  +  LDL  N   G IP  I
Sbjct:   600 PPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFI 648

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 8.9e-67, Sum P(2) = 8.9e-67
 Identities = 182/513 (35%), Positives = 267/513 (52%)

Query:     5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLI-NSSKNTILDQGLRQLVHLQELYI 63
             +NLE LD+G    D  TS L  + E+  SLK L L  N  K     Q L  L  L+ L +
Sbjct:    79 RNLETLDLGVNFYD--TSVLPYLNEAV-SLKTLILHDNLFKGGFPVQELINLTSLEVLDL 135

Query:    64 GGYDLRGSLPWC-LANMTSLQVLYASSNELTGNISP-GLCELVLMRELHIDNNDLRGSLP 121
                   G LP   L N+ +L+ L  S+N+ +G++   G+C L  ++EL +  N   G +P
Sbjct:   136 KFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIP 195

Query:   122 LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKR 181
             LC +  + LRVLD+S N L+  I    +    S+E L L +N F +   SL  +  L++ 
Sbjct:   196 LCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSMEYLSLLDNDF-EGLFSLGLITELTEL 253

Query:   182 KTFD----SEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHL 237
             K F     S +    E++ +      QL+ I LS + + G  P FL++Q +L+  DLS+ 
Sbjct:   254 KVFKLSSRSGMLQIVETNVSGGLQS-QLSSIMLS-HCNLGKIPGFLWYQQELRVIDLSNN 311

Query:   238 NLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG 297
              LSG FP WL+              S F +  +P  + ++L  LD+S N F   +P ++G
Sbjct:   312 ILSGVFPTWLLENNTELQALLLQNNS-FKTLTLP-RTMRRLQILDLSVNNFNNQLPKDVG 369

Query:   298 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357
               L  L  LNLS N F G++PSS A M+ +E +D+SYN  +G++P  +   C+SL  L L
Sbjct:   370 LILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKL 429

Query:   358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW 417
             S+N   G I  +  + T+L+TL +D N FTG+I  +L    +L  + LS+N LTG IPRW
Sbjct:   430 SHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRW 489

Query:   418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477
             LGN   LE + + NN L+G IP     +  L +LDLS N +  +LP   S      L L 
Sbjct:   490 LGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH 548

Query:   478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
              N + G +   +     L  LDL  N L G+IP
Sbjct:   549 NNNLTGSIPDTLWYGLRL--LDLRNNKLSGNIP 579

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 1.1e-65, P = 1.1e-65
 Identities = 191/523 (36%), Positives = 262/523 (50%)

Query:     2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLR-----QLV 56
             +  K L+ LD+ +     N    + V ES+   +F       K   L  GLR      + 
Sbjct:   255 KDLKMLQELDLSDNGF-TNLDHGRDVDESRSEKRFDFREVVQKVETLWIGLRLSFQMSIT 313

Query:    57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL--TGNISPGLCELVLMRELHIDNN 114
             H + + +GG    G     L   TSLQVL    N+L  T     G+C L+ +REL + +N
Sbjct:   314 HHKSVTVGGNGFLG-----LEIPTSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSN 368

Query:   115 DLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELI--LSNNHFFQSPISL 172
              L  SLP CL NLT LR LD+S+NQL  N+SS  +  L S+ E +  L NN  F      
Sbjct:   369 ALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEYLSLLDNN--FDGSFLF 424

Query:   173 EPLFNLSKRKTF--DSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLK 230
               L N ++   F   S++        +S  P FQL  + LS    G T   FL HQ DL 
Sbjct:   425 NSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLC 484

Query:   231 NADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRG 290
               DLSH  L+G FP WLV              SL     +PI  H  L  LD+S+N    
Sbjct:   485 FVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYD 542

Query:   291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
              I  +IG   P L  +N S N F G+IPSS  +MK L+ +D+S N L G++P    + C+
Sbjct:   543 SIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCY 602

Query:   351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
             SL +L LSNN LQG IFS+  NLT L+ L LDGN FTG + E L K   L  L +SDN  
Sbjct:   603 SLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRF 662

Query:   411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS 470
             +G +P W+G +S L  + M  N L+GP P    Q   ++++D+S+NS   ++P   +  S
Sbjct:   663 SGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPS 721

Query:   471 IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
             + +L L  N+  G +   +  +  L  LDL  N+  G I N I
Sbjct:   722 LRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 1.6e-65, P = 1.6e-65
 Identities = 192/530 (36%), Positives = 276/530 (52%)

Query:     2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLI-NSSKNTILDQGLRQLVHLQE 60
             R+F+ LE LD+ +     N+     +  S  SLK LSL  N+       + LR L +++ 
Sbjct:   146 RRFRKLEILDLSDNLF--NSRIFPFLN-SATSLKSLSLWGNNMGGPFPAKELRDLTNVEL 202

Query:    61 LYIGGYDLRGSLP----WCLANMTSLQVL---YASSNELTGNIS---P--GLCELVLMRE 108
             L +      GS+P    + L  + +L +    ++SS EL G  +   P  G C    M E
Sbjct:   203 LDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEE 262

Query:   109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
             L + NN L G  PLCL +LT LRVLD+S NQLT N+ S+ L +L S+E L L  N+F + 
Sbjct:   263 LKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNF-EG 320

Query:   169 PISLEPLFNLSKRKTF--DSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
               SL  L NLSK K    DS+  +       S  PKFQL  I+L    +    P FL HQ
Sbjct:   321 FFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRS-CNLEKVPHFLLHQ 379

Query:   227 HDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNN 286
              DL + DLS   + G FP+WL+              S F SF +P  +H  L  L+VS N
Sbjct:   380 KDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS-FTSFQLPKSAHN-LLFLNVSVN 437

Query:   287 FFRGHIPVE-IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
              F  H+ ++  G  LP L+ +NL+ N F G++PSS  +MK +E +D+S+N+  G++P R 
Sbjct:   438 KFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRF 496

Query:   346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
                C++L IL LS+N L G +F E  N T L  + +D N FTG I +       L  L +
Sbjct:   497 LKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDI 556

Query:   406 SDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC 465
             S+N LTG IP W+G    L  + + NN LEG IP     ++ L++LDLS+N +   +P  
Sbjct:   557 SNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPH 616

Query:   466 FSPASIEQLHLSKNKIEGRLESIIHDSP--HLVTLDLSCNSLHGSIPNQI 513
              S      + L +N     L  +I D+   +++ LDL  N L G++P  I
Sbjct:   617 VSSIYHGAVLLLQNN---NLSGVIPDTLLLNVIVLDLRNNRLSGNLPEFI 663

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
 Identities = 179/486 (36%), Positives = 250/486 (51%)

Query:    34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWC-LANMTSLQVLYASSNEL 92
             L+ L L  S  N  + +    L  L+ L +   D    +    L  +T+L+VL  + N L
Sbjct:   189 LELLDLSRSGYNGSIPE-FTHLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHL 247

Query:    93 TGNISPGL-CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
              G I   + CE+  +R+L +  N   G LP+CL NL  LRVLD+S NQL+ N+ +S    
Sbjct:   248 DGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNS 306

Query:   152 LTSIEELILSNNHFFQSPISLEPLFNLSKRKTF----DSEIC-AETESHYNSLTPKFQLT 206
             L S+E L LS+N+F +   SL PL NL+K K F     SE+   ETES++    PKFQLT
Sbjct:   307 LESLEYLSLSDNNF-EGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNW---LPKFQLT 362

Query:   207 FISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFG 266
               +L  +   G  P FL +Q +L+  DLS   LSG  P WL+              S F 
Sbjct:   363 VAALP-FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNS-FT 420

Query:   267 SFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 326
              F +P   H KL  LD S N   G +P  IG  LP L+ +N S N F G++PSS  +M  
Sbjct:   421 IFQIPTIVH-KLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMND 479

Query:   327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
             +  +D+SYN  +GE+P  +   CFSL  L LS+NS  G I   +  LT+L+ L++  N F
Sbjct:   480 ISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLF 539

Query:   387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG-NLSALEDIIMPNNNLEGPIPIEFCQL 445
             TGEI   L     L     S+N LTG I   +  + S L  +++ NN LEG +P     +
Sbjct:   540 TGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAI 599

Query:   446 NSLKILDLSNNSIFRTLPSCFSPASIE-QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS 504
             + L  LDLS N +   LPS    +    ++ L  N   G L   + ++ ++  LDL  N 
Sbjct:   600 HHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYI--LDLRNNK 657

Query:   505 LHGSIP 510
             L GSIP
Sbjct:   658 LSGSIP 663

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 4.3e-57, P = 4.3e-57
 Identities = 179/520 (34%), Positives = 256/520 (49%)

Query:     2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLI-NSSKNTILDQGLRQLVHLQE 60
             R+ +NL+ L+    +   N S    +  +  SL  LSL  N+    I  + L+ L +L+ 
Sbjct:   118 RRLRNLQILNFSSNEF--NNSIFPFLNAAT-SLTTLSLRRNNMYGPIPLKELKNLTNLEL 174

Query:    61 LYIGGYDLRGSLPWC-LANMTSLQVLYASSNELTGNIS-PGLCELVLMRELHIDNNDLRG 118
             L + G  + GS+P      +  L+ L  SSN +  ++     CE+  ++EL +   +  G
Sbjct:   175 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVG 234

Query:   119 SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
              LPLC  NL  LR LD+S NQLT NI  S    L S+E L LS+N F +   SL PL NL
Sbjct:   235 QLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSF-EGFFSLNPLTNL 292

Query:   179 SKRKTF-----DSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
             +K K F     D  +  + ES +    P FQL+ + L         P FL +Q +L   D
Sbjct:   293 TKLKVFIFSSKDDMVQVKIESTWQ---PLFQLSVLVLR-LCSLEKIPNFLMYQKNLHVVD 348

Query:   234 LSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
             LS   +SG  P WL+              S F  F MP   H  L  LD S N   G  P
Sbjct:   349 LSGNRISGIIPTWLLENNPELEVLQLKNNS-FTIFQMPTSVHN-LQVLDFSENNIGGLFP 406

Query:   294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
                G  LP L+ +N S N F G+ PSS  +M  +  +D+SYN L+GE+P+   + CFSL 
Sbjct:   407 DNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLS 466

Query:   354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE 413
             IL LS+N   GH    + N T+L+ L+++ N FTG+I   L     L  L +S+N L GE
Sbjct:   467 ILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGE 526

Query:   414 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQ 473
             +P  L     L  + +  N L G +P     L++  +L L NN+    +P  F   SI+ 
Sbjct:   527 LPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN--VLFLHNNNFTGPIPDTFL-GSIQI 582

Query:   474 LHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
             L L  NK+ G +   + D+  +  L L  NSL G IP+ +
Sbjct:   583 LDLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIPSTL 621

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.6e-48, P = 2.6e-48
 Identities = 160/465 (34%), Positives = 230/465 (49%)

Query:    58 LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
             LQ L I      G +P  LAN+T LQ+L  S N+LTG I   L  L  ++ L +D N L+
Sbjct:   164 LQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQ 223

Query:   118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS-PISLEPLF 176
             G+LP  ++N +SL  L  S+N++   I ++    L  +E L LSNN+F  + P SL    
Sbjct:   224 GTLPSAISNCSSLVHLSASENEIGGVIPAA-YGALPKLEVLSLSNNNFSGTVPFSLFCNT 282

Query:   177 NLS-KRKTFD--SEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
             +L+  +  F+  S+I    E+  N  T    L  + L      G FP +L +   LKN D
Sbjct:   283 SLTIVQLGFNAFSDI-VRPETTANCRTG---LQVLDLQENRISGRFPLWLTNILSLKNLD 338

Query:   234 LSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
             +S    SG+ P   +              SL G   + I     L  LD   N  +G IP
Sbjct:   339 VSGNLFSGEIPPD-IGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIP 397

Query:   294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
               +G Y+  L  L+L RN+F+G +PSS  +++ LER+++  N L G  P  + A   SL 
Sbjct:   398 EFLG-YMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALT-SLS 455

Query:   354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE 413
              L LS N   G +     NL+NL  L L GN F+GEI  S+   + L  L LS  +++GE
Sbjct:   456 ELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGE 515

Query:   414 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI-E 472
             +P  L  L  ++ I +  NN  G +P  F  L SL+ ++LS+NS    +P  F    +  
Sbjct:   516 VPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLV 575

Query:   473 QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
              L LS N I G +   I +   L  L+L  N L G IP  + RLP
Sbjct:   576 SLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLP 620

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 7.1e-46, P = 7.1e-46
 Identities = 153/514 (29%), Positives = 225/514 (43%)

Query:     1 FRKFKNLEHLDMGEVQVDV-NTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQ 59
             +R    L +L + ++  +  N S    +  +      +   N        +GL+ L +L+
Sbjct:   117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query:    60 ELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNIS-PGLCELVLMRELHIDNNDLRG 118
              L +    L GS+   L ++  L+ L  SSN+ + ++    L  L+ +  L +  N + G
Sbjct:   177 LLDLRANKLNGSMQE-LIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDG 235

Query:   119 SLPL-CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS-PISLEPLF 176
              +P+     L +LR LD+  N     I    L  L  +  L LS+N      P S   L 
Sbjct:   236 PIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLE 294

Query:   177 NLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSH 236
             +L      D+    +     N LT    L F+ +  +      P FL +Q  L+  DLS 
Sbjct:   295 SLEYLSLSDNNF--DGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSS 352

Query:   237 LNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEI 296
              NLSG  P WL+              S F  F +P   H  L   D S N   G  P ++
Sbjct:   353 NNLSGNIPTWLLTNNPELEVLQLQNNS-FTIFPIPTMVHN-LQIFDFSANNI-GKFPDKM 409

Query:   297 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356
                LP L+ LN S N F G  P+S  +MK +  +D+SYN  +G++P      C S+  L 
Sbjct:   410 DHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLK 469

Query:   357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPR 416
             LS+N   G     + N  +L  L++D N FTG I   LS   +L  L +S+N L+G IPR
Sbjct:   470 LSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPR 529

Query:   417 WLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHL 476
             WL     L+ +++ NN LEG IP     +  L  LDLS N     LPS         + L
Sbjct:   530 WLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFL 589

Query:   477 SKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
               N   G +   +  S  +  LDL  N L GSIP
Sbjct:   590 HNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIP 621

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 143/476 (30%), Positives = 223/476 (46%)

Query:    44 KNTILDQGL-RQLVHLQELYIGGYD---LRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
             +N +L   +  ++     L + G+D   L G +P CL ++  LQ+  A+ N LTG+I   
Sbjct:   152 RNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS 211

Query:   100 LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELI 159
             +  L  + +L +  N L G +P    NL +L+ L +++N L  +I +  + + +S+ +L 
Sbjct:   212 IGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE-IGNCSSLVQLE 270

Query:   160 LSNNHFF-QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGT 218
             L +N    + P  L  L  L   + + +++ +   S    LT   QLT + LS     G 
Sbjct:   271 LYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLT---QLTHLGLSENHLVGP 327

Query:   219 FPKFLYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKL 278
               + +     L+   L   N +G+FP   +              ++ G     +     L
Sbjct:   328 ISEEIGFLESLEVLTLHSNNFTGEFPQ-SITNLRNLTVLTVGFNNISGELPADLGLLTNL 386

Query:   279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLT 338
               L   +N   G IP  I     GL  L+LS N   G IP  F  M  L  + I  N  T
Sbjct:   387 RNLSAHDNLLTGPIPSSISN-CTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFT 444

Query:   339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY 398
             GEIP+ +   C +LE L++++N+L G +      L  L  LQ+  N  TG I   +    
Sbjct:   445 GEIPDDIF-NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK 503

Query:   399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
              L  LYL  N  TG IPR + NL+ L+ + M +N+LEGPIP E   +  L +LDLSNN  
Sbjct:   504 DLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKF 563

Query:   459 FRTLPSCFSPA-SIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
                +P+ FS   S+  L L  NK  G + + +     L T D+S N L G+IP ++
Sbjct:   564 SGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGEL 619

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 3.8e-44, P = 3.8e-44
 Identities = 146/517 (28%), Positives = 244/517 (47%)

Query:     3 KFKNLEHLDMGEVQV--DVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
             +F NL H+D+   ++   + T+ L  +  S  SL   S  N     I  Q L  LV+L+ 
Sbjct:    93 RFNNLIHIDLSSNRLVGPIPTT-LSNLSSSLESLHLFS--NLLSGDIPSQ-LGSLVNLKS 148

Query:    61 LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
             L +G  +L G++P    N+ +LQ+L  +S  LTG I      LV ++ L + +N+L G +
Sbjct:   149 LKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPI 208

Query:   121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF-QSPISLEPLFNLS 179
             P  + N TSL +   + N+L  ++ +  L  L +++ L L +N F  + P  L  L ++ 
Sbjct:   209 PAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQ 267

Query:   180 KRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 239
                   +++          LT    L  + LS     G   +  +  + L+   L+   L
Sbjct:   268 YLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRL 324

Query:   240 SGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY 299
             SG  P  +                L G     I + Q L  LD+SNN   G IP  +   
Sbjct:   325 SGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL-FQ 383

Query:   300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
             L  L +L L+ N+  G++ SS +++  L+   + +N L G++P+ +      LEI+ L  
Sbjct:   384 LVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF-LGKLEIMYLYE 442

Query:   360 NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG 419
             N   G +  E  N T L  +   GN+ +GEI  S+ +   L  L+L +N L G IP  LG
Sbjct:   443 NRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLG 502

Query:   420 NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP-SCFSPASIEQLHLSK 478
             N   +  I + +N L G IP  F  L +L++  + NNS+   LP S  +  ++ +++ S 
Sbjct:   503 NCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSS 562

Query:   479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515
             NK  G +  +   S +L + D++ N   G IP ++G+
Sbjct:   563 NKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGK 598

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  173 bits (440), Expect = 2e-46
 Identities = 148/462 (32%), Positives = 222/462 (48%), Gaps = 35/462 (7%)

Query: 54  QLVHLQELYIGGYDLRGSLPWCLANMT-SLQVLYASSNELTGNISPGLCELVLMRELHID 112
           +L ++Q + +    L G +P  +   + SL+ L  S+N  TG+I  G   +  +  L + 
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLS 148

Query: 113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF-QSPIS 171
           NN L G +P  + + +SL+VLD+  N L   I +S L +LTS+E L L++N    Q P  
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRE 207

Query: 172 LEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKN 231
           L  + +L                          L + +LSG I     P  +     L +
Sbjct: 208 LGQMKSLKW----------------------IYLGYNNLSGEI-----PYEIGGLTSLNH 240

Query: 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291
            DL + NL+G  P+ L  N  NL+ L L  N L G     I S QKL +LD+S+N   G 
Sbjct: 241 LDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351
           IP E+   L  L  L+L  N F G IP +   +  L+ + +  N+ +GEIP+ +     +
Sbjct: 300 IP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-N 357

Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
           L +L LS N+L G I     +  NL  L L  N   GEI +SL  C  L  + L DN  +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI 471
           GE+P     L  +  + + NNNL+G I      + SL++L L+ N  F  LP  F    +
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
           E L LS+N+  G +   +     L+ L LS N L G IP+++
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  168 bits (426), Expect = 2e-44
 Identities = 161/489 (32%), Positives = 236/489 (48%), Gaps = 38/489 (7%)

Query: 26  IVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVL 85
           I   S P+L+ L L N+  +  +   +     L+ L +GG  L G +P  L N+TSL+ L
Sbjct: 134 IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 86  YASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNIS 145
             +SN+L G I   L ++  ++ +++  N+L G +P  +  LTSL  LD+  N LT  I 
Sbjct: 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 146 SSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQL 205
           SS L +L +++ L L  N     PI    +F+L K  + D                   L
Sbjct: 254 SS-LGNLKNLQYLFLYQNKL-SGPIP-PSIFSLQKLISLD-------------------L 291

Query: 206 TFISLSGYIDGGTFPKFLYHQHDLKNADLSHL---NLSGKFPNWLVENNANLERLLLADN 262
           +  SLSG I     P+ +     L+N ++ HL   N +GK P  L  +   L+ L L  N
Sbjct: 292 SDNSLSGEI-----PELVIQ---LQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN 342

Query: 263 SLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 322
              G     +  H  L  LD+S N   G IP E       L  L L  N+  G IP S  
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP-EGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLD 382
             + L RV +  N  +GE+P     +   +  L +SNN+LQG I S K+++ +L  L L 
Sbjct: 402 ACRSLRRVRLQDNSFSGELP-SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 383 GNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF 442
            NKF G  L        LE L LS N  +G +PR LG+LS L  + +  N L G IP E 
Sbjct: 461 RNKFFGG-LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 443 CQLNSLKILDLSNNSIFRTLPSCFSPASI-EQLHLSKNKIEGRLESIIHDSPHLVTLDLS 501
                L  LDLS+N +   +P+ FS   +  QL LS+N++ G +   + +   LV +++S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 502 CNSLHGSIP 510
            N LHGS+P
Sbjct: 580 HNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  152 bits (386), Expect = 3e-39
 Identities = 139/439 (31%), Positives = 207/439 (47%), Gaps = 34/439 (7%)

Query: 78  NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLT-SLRVLDVS 136
           N + +  +  S   ++G IS  +  L  ++ +++ NN L G +P  +   + SLR L++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 137 DNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHY 196
           +N  T +I    + +L   E L LSNN                       EI        
Sbjct: 127 NNNFTGSIPRGSIPNL---ETLDLSNN-------------------MLSGEI-------P 157

Query: 197 NSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLER 256
           N +     L  + L G +  G  P  L +   L+   L+   L G+ P  L +   +L+ 
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKW 216

Query: 257 LLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS 316
           + L  N+L G     I     L  LD+  N   G IP  +G  L  L  L L +N  +G 
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGP 275

Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL 376
           IP S   ++ L  +D+S N L+GEIPE +  +  +LEIL L +N+  G I     +L  L
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334

Query: 377 MTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436
             LQL  NKF+GEI ++L K   L  L LS N+LTGEIP  L +   L  +I+ +N+LEG
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQ-LHLSKNKIEGRLESIIHDSPHL 495
            IP       SL+ + L +NS    LPS F+   +   L +S N ++GR+ S   D P L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 496 VTLDLSCNSLHGSIPNQIG 514
             L L+ N   G +P+  G
Sbjct: 455 QMLSLARNKFFGGLPDSFG 473

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 5e-31
 Identities = 96/287 (33%), Positives = 135/287 (47%), Gaps = 31/287 (10%)

Query: 234 LSHLNLSGKFPNW---LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRG 290
           LS+ N S     W      N++ +  + L+  ++ G     I     + T+++SNN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
            IP +I T    L  LNLS N F GSIP                                
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI---------------------------P 140

Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
           +LE L LSNN L G I ++  + ++L  L L GN   G+I  SL+    LE L L+ N L
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS 470
            G+IPR LG + +L+ I +  NNL G IP E   L SL  LDL  N++   +PS      
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260

Query: 471 -IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
            ++ L L +NK+ G +   I     L++LDLS NSL G IP  + +L
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 5e-31
 Identities = 132/415 (31%), Positives = 190/415 (45%), Gaps = 42/415 (10%)

Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
           + +   ++ G +   +  L  ++ +++S+NQL+  I        +S+  L LSNN+ F  
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTG 132

Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI--DGGTFPKFLYHQ 226
            I    + NL            ET    N++          LSG I  D G+F       
Sbjct: 133 SIPRGSIPNL------------ETLDLSNNM----------LSGEIPNDIGSF------- 163

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
             LK  DL    L GK PN L  N  +LE L LA N L G     +   + L  + +  N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA 346
              G IP EIG  L  L  L+L  N   G IPSS  ++K L+ + +  N+L+G IP  + 
Sbjct: 223 NLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI- 280

Query: 347 ARCFSLE---ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGL 403
              FSL+    L LS+NSL G I      L NL  L L  N FTG+I  +L+    L+ L
Sbjct: 281 ---FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Query: 404 YLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463
            L  N  +GEIP+ LG  + L  + +  NNL G IP   C   +L  L L +NS+   +P
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 464 SCFSPA-SIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
                  S+ ++ L  N   G L S     P +  LD+S N+L G I ++   +P
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 86/317 (27%), Positives = 128/317 (40%), Gaps = 60/317 (18%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
           +L+ L L +++    +   L  L  LQ L +      G +P  L    +L VL  S+N L
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 93  TGNISPGLC------ELVL------------------MRELHIDNNDLRGSLPLCLANLT 128
           TG I  GLC      +L+L                  +R + + +N   G LP     L 
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 129 SLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD--- 185
            +  LD+S+N L   I+S     + S++ L L+ N FF     L   F   + +  D   
Sbjct: 429 LVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFGG---LPDSFGSKRLENLDLSR 484

Query: 186 SEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN 245
           ++          SL+   QL    LS     G  P  L     L + DLSH  LSG+ P 
Sbjct: 485 NQFSGAVPRKLGSLSELMQL---KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 246 WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305
              E                    MP+     L+ LD+S N   G IP  +G  +  L+ 
Sbjct: 542 SFSE--------------------MPV-----LSQLDLSQNQLSGEIPKNLGN-VESLVQ 575

Query: 306 LNLSRNAFNGSIPSSFA 322
           +N+S N  +GS+PS+ A
Sbjct: 576 VNISHNHLHGSLPSTGA 592

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%)

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
           QH    AD    +  GK   W ++       L L +  L G     I   + L ++++S 
Sbjct: 401 QHPWSGADCQFDSTKGK---WFIDG------LGLDNQGLRGFIPNDISKLRHLQSINLSG 451

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N  RG+IP  +G+ +  L  L+LS N+FNGSIP S   +  L  ++++ N L+G +P  +
Sbjct: 452 NSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Query: 346 AARCFSLEILALSNNS 361
             R         ++N+
Sbjct: 511 GGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE 340
           L + N   RG IP +I + L  L  +NLS N+  G+IP S   +  LE +D+SYN   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 341 IPERMAARCFSLEILALSNNSLQGHI 366
           IPE +  +  SL IL L+ NSL G +
Sbjct: 482 IPESL-GQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 32/86 (37%), Positives = 49/86 (56%)

Query: 379 LQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI 438
           L LD     G I   +SK   L+ + LS N + G IP  LG++++LE + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 439 PIEFCQLNSLKILDLSNNSIFRTLPS 464
           P    QL SL+IL+L+ NS+   +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 49  DQGLR--------QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL 100
           +QGLR        +L HLQ + + G  +RG++P  L ++TSL+VL  S N   G+I   L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 101 CELVLMRELHIDNNDLRGSLP 121
            +L  +R L+++ N L G +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 335 NQ-LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILES 393
           NQ L G IP  ++ +   L+ + LS NS++G+I     ++T+L  L L  N F G I ES
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 394 LSKCYLLEGLYLSDNHLTGEIPRWLG 419
           L +   L  L L+ N L+G +P  LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
            +S    + ++GL L +  L G IP  +  L  L+ I +  N++ G IP     + SL++
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 451 LDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRL 485
           LDLS NS   ++P       S+  L+L+ N + GR+
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 32/85 (37%), Positives = 44/85 (51%)

Query: 355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI 414
           L L N  L+G I ++   L +L ++ L GN   G I  SL     LE L LS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 415 PRWLGNLSALEDIIMPNNNLEGPIP 439
           P  LG L++L  + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 27/80 (33%), Positives = 45/80 (56%)

Query: 68  LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANL 127
           LRG +P  ++ +  LQ +  S N + GNI P L  +  +  L +  N   GS+P  L  L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 128 TSLRVLDVSDNQLTQNISSS 147
           TSLR+L+++ N L+  + ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 39/199 (19%)

Query: 327 LERVDISYNQLTGEIPERMAA--RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN 384
           L+ +D+S N L  +    + +  R  SL+ L L+NN L       +     L  L     
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG--LRLLAKGLKDLPPA-- 138

Query: 385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL----SALEDIIMPNNNLEGPIPI 440
                          LE L L  N L G     L         L+++ + NN +      
Sbjct: 139 ---------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183

Query: 441 EFCQ----LNSLKILDLSNNSIFRT----LPSCF-SPASIEQLHLSKNKIEGR-----LE 486
              +      +L++LDL+NN +       L     S  S+E L+L  N +          
Sbjct: 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243

Query: 487 SIIHDSPHLVTLDLSCNSL 505
           +++  +  L+TL LSCN +
Sbjct: 244 ALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
           L  L  L+L  N      P        L+ +D+S N++   +P  +     +L+ L LS 
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSF 172

Query: 360 NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG 419
           N L   +     NL+NL  L L GNK + ++   +     LE L LS+N +  E+   L 
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229

Query: 420 NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
           NL  L  + + NN LE  +P     L++L+ LDLSNN I   + S  S  ++ +L LS N
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGN 287

Query: 480 KIEGRLESII 489
            +   L  I 
Sbjct: 288 SLSNALPLIA 297

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 451 LDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509
           L L N  +   +P+  S    ++ ++LS N I G +   +     L  LDLS NS +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 510 PNQIGRL 516
           P  +G+L
Sbjct: 483 PESLGQL 489

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
           L+ L LS+N LT         L  L+ + +  NNL    P  F  L SL+ LDLS N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           + L + NN L          L +L+VLD+S N LT +IS      L S+  L LS N+ 
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
           NL +L L  N+ T     +      L+ L LS N+LT   P     L +L  + +  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 5/170 (2%)

Query: 348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD 407
               L  L L+ N L+ +I      LTNL +L LD N  T            L+ L LSD
Sbjct: 91  NLLPLPSLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467
           N +   +P  L NL  L+++ +  N+L   +P     L++L  LDLS N I    P    
Sbjct: 150 NKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIEL 207

Query: 468 PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            +++E+L LS N I   L S + +  +L  L+LS N L   +P  IG L 
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLS 255

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
            L +LD+SNN     IP      LP L  L+LS N      P +F+ +  L  +D+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 337 L 337
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PLN03150	623	hypothetical protein; Provisional	98.88
PLN03150	623	hypothetical protein; Provisional	98.86
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
KOG4341	483	consensus F-box protein containing LRR [General fu	98.76
KOG4341	483	consensus F-box protein containing LRR [General fu	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.12
KOG4308	478	consensus LRR-containing protein [Function unknown	96.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.67
KOG4308	478	consensus LRR-containing protein [Function unknown	93.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.76
smart00370	26	LRR Leucine-rich repeats, outliers.	90.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.56
smart00370	26	LRR Leucine-rich repeats, outliers.	89.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-53  Score=454.53  Aligned_cols=500  Identities=29%  Similarity=0.408  Sum_probs=386.2

Q ss_pred             CCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCC
Q 042271            2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTS   81 (517)
Q Consensus         2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~   81 (517)
                      +.+++|++|++++|  .+.+.++...+..+++|++|++++|.+....+  .+.+++|++|++++|.+.+..|..+.++++
T Consensus        90 ~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         90 FRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             hCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            45677777777777  55556665545577777777777665543222  244677777777777777677777777888


Q ss_pred             CcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecc
Q 042271           82 LQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILS  161 (517)
Q Consensus        82 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (517)
                      |++|++++|.+.+..|..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+.++. .+..+++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECc
Confidence            88888887777767777777788888888888877777777777788888888888777655554 67777888888887


Q ss_pred             cCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCC
Q 042271          162 NNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG  241 (517)
Q Consensus       162 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  241 (517)
                      +|.+..  .....+.++++|+.+++............+....+|+.+++++|.+.+.+|.++..+++|+.+++.+|.+.+
T Consensus       245 ~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        245 YNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             Cceecc--ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            776421  112345667777777776654433333334445578888888887777788888888888888888888877


Q ss_pred             CCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhh
Q 042271          242 KFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF  321 (517)
Q Consensus       242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  321 (517)
                      ..|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.++..+
T Consensus       323 ~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~  400 (968)
T PLN00113        323 KIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSL  400 (968)
T ss_pred             cCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHH
Confidence            777664 56788888888888877777777777888888888888887777776665 6788888888888887888888


Q ss_pred             hcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCC
Q 042271          322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE  401 (517)
Q Consensus       322 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  401 (517)
                      ..+++|+.|++++|.+.+..|.. +..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..++|+
T Consensus       401 ~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~  478 (968)
T PLN00113        401 GACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE  478 (968)
T ss_pred             hCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence            88888888888888888666644 4568888889998888887777777788889999999888876555544 457899


Q ss_pred             eEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCc
Q 042271          402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNK  480 (517)
Q Consensus       402 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~  480 (517)
                      .|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+. +++|++|++++|.
T Consensus       479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence            999999999888888899999999999999999988898999999999999999999888877766 7899999999999


Q ss_pred             CCccchhhhcCCCcccEEECCCCcCCCCCCcc
Q 042271          481 IEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ  512 (517)
Q Consensus       481 ~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~  512 (517)
                      +++.+|..+..+++|+++++++|++++.+|..
T Consensus       559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            99888999999999999999999999988853

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-52  Score=448.15  Aligned_cols=500  Identities=27%  Similarity=0.381  Sum_probs=443.7

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccC-CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKN-TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ   83 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   83 (517)
                      .+++.|+++++  .+.+..+.. +..++.|++|++++|.+. .++...+..+++|++|++++|.+.+..|.  ..+++|+
T Consensus        69 ~~v~~L~L~~~--~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGK--NISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCC--CccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence            47899999999  666766665 889999999999988775 77776677999999999999999877664  4688999


Q ss_pred             EEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccC
Q 042271           84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN  163 (517)
Q Consensus        84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~  163 (517)
                      +|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYN  222 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCC
Confidence            999999999988999999999999999999999989999999999999999999999776665 7899999999999999


Q ss_pred             CCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCC
Q 042271          164 HFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF  243 (517)
Q Consensus       164 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  243 (517)
                      .+..  .....+.++++|+.+++..+.........+....+|+.|.+.+|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus       223 ~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        223 NLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             ccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            8532  22245678889999999886554444445566679999999999998889999999999999999999999888


Q ss_pred             ChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhc
Q 042271          244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD  323 (517)
Q Consensus       244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  323 (517)
                      |..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.++..+..
T Consensus       301 p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        301 PELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             ChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhC
Confidence            8875 68899999999999998888888899999999999999998888887776 899999999999999889999999


Q ss_pred             CCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeE
Q 042271          324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGL  403 (517)
Q Consensus       324 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  403 (517)
                      +++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  457 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML  457 (968)
T ss_pred             cCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence            999999999999998777754 4569999999999999998888889999999999999999988888888889999999


Q ss_pred             EecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCC
Q 042271          404 YLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIE  482 (517)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~  482 (517)
                      ++++|.+.+..|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|++++..+..+. +++|++|++++|.++
T Consensus       458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  536 (968)
T PLN00113        458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS  536 (968)
T ss_pred             ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence            999999987777655 468999999999999988999999999999999999999888877665 899999999999999


Q ss_pred             ccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271          483 GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       483 ~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      +.+|..|..+++|++|++++|++++.+|..++++
T Consensus       537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             ccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            9999999999999999999999999999988775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-39  Score=296.60  Aligned_cols=388  Identities=22%  Similarity=0.218  Sum_probs=221.6

Q ss_pred             ceEEeccccccCCcchhhhhhcc--cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEc
Q 042271           34 LKFLSLINSSKNTILDQGLRQLV--HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI  111 (517)
Q Consensus        34 L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  111 (517)
                      -+.|+++++.++.+....+..+-  .-++|++++|.+..+.+..|.++++|+++++..|.++ .+|...+....|++|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            45566666666665443444433  3344777777777666777777777777777777776 56654444555777777


Q ss_pred             cccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccc
Q 042271          112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE  191 (517)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  191 (517)
                      .+|.|+.+..+.+..++.|++|||+.|.+.. ++...|..-.++++|++++|+|+...                      
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~----------------------  189 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLE----------------------  189 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccc----------------------
Confidence            7777776666677777777777777777753 55445666667777777777652221                      


Q ss_pred             cccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc
Q 042271          192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP  271 (517)
Q Consensus       192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (517)
                                                  ...|..+.+|..+.++.|.++ .+|...|.++++|+.|++..|.+....+..
T Consensus       190 ----------------------------~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  190 ----------------------------TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             ----------------------------cccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh
Confidence                                        122334445666666666666 555555566666666666666654444445


Q ss_pred             cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      |..+++|+.|.+..|++. .+..+.+..+.++++|+|..|.++..-...+-+++.|+.|+++.|.|. .+....++.+++
T Consensus       241 FqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~Wsftqk  318 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQK  318 (873)
T ss_pred             hcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhccc
Confidence            555556666666655554 444444444555555555555555444444455555555555555554 333333444555


Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc---chhhcCCCCCcEEE
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI---PRWLGNLSALEDII  428 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~  428 (517)
                      |++|++++|.++..-...|.-+..|++|+++.|.++......|..+++|++|+++.|.+...+   ...|.++++|+.|.
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            555555555555544445555555555555555555444445555555555555555443321   23344555555555


Q ss_pred             CCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEc
Q 042271          429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHL  476 (517)
Q Consensus       429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  476 (517)
                      +.+|++..+...+|.++++|++|+|.+|.+..+.+.+|....|++|.+
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~  446 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM  446 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence            555555544444555555555555555555555555555445555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-38  Score=289.79  Aligned_cols=396  Identities=23%  Similarity=0.227  Sum_probs=286.3

Q ss_pred             cCcEEEecCCcccCCccccccCC--CCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEe
Q 042271           57 HLQELYIGGYDLRGSLPWCLANM--TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLD  134 (517)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  134 (517)
                      +-+.|++++..+..+.-..+...  ..-+.|++++|++...-++.|.++++|+++++.+|.++ .+|.......+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            44567777777764433344332  23456899999888777777888999999999988888 6777666666799999


Q ss_pred             ccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccc
Q 042271          135 VSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI  214 (517)
Q Consensus       135 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  214 (517)
                      |.+|.|.. +....+..++.|+.||++.|.+...+..                                           
T Consensus       132 L~~N~I~s-v~se~L~~l~alrslDLSrN~is~i~~~-------------------------------------------  167 (873)
T KOG4194|consen  132 LRHNLISS-VTSEELSALPALRSLDLSRNLISEIPKP-------------------------------------------  167 (873)
T ss_pred             eecccccc-ccHHHHHhHhhhhhhhhhhchhhcccCC-------------------------------------------
Confidence            99888865 4444778888888888888875332211                                           


Q ss_pred             cCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCCh
Q 042271          215 DGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPV  294 (517)
Q Consensus       215 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  294 (517)
                         .+    ..-.++++|++.+|.++... ..-|..+.+|..|.++.|.++......|..+++|+.|++..|.+. .+..
T Consensus       168 ---sf----p~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~  238 (873)
T KOG4194|consen  168 ---SF----PAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG  238 (873)
T ss_pred             ---CC----CCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehh
Confidence               11    12236777777777776332 222456677888888888887777777777888888888888775 4434


Q ss_pred             hhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCC
Q 042271          295 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT  374 (517)
Q Consensus       295 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  374 (517)
                      -.+.++++|+.|.+..|.+......+|-.|.++++|+++.|++. .+...+..++++|+.|++++|.+..+-...++.++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            44556778888888888777666667777888888888888877 66666666688888888888888777777777788


Q ss_pred             CCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccc---ccccCCCCccEE
Q 042271          375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP---IEFCQLNSLKIL  451 (517)
Q Consensus       375 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L  451 (517)
                      +|++|++++|+++...++.|..+..|++|.+++|.+......+|.++.+|++|++++|.++..+.   ..|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            88888888888877777778778888888888887776556677778888888888887765443   346777888888


Q ss_pred             EccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271          452 DLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       452 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      .+.+|++..+...++. ++.||.|++.+|.+..+-+++|..+ .|+.|.++.-.|-+.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD  454 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence            8888887666666665 7888888888888877777788877 788777765555433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-37  Score=269.91  Aligned_cols=428  Identities=23%  Similarity=0.305  Sum_probs=234.8

Q ss_pred             ceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccc
Q 042271           34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN  113 (517)
Q Consensus        34 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  113 (517)
                      ++.+.+++|.+..+.+ .+.++..|.+|++.+|.+. ..|.+++.+..++.++.+.|++. .+|+.++.+++|+++++++
T Consensus        47 l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            4444444444444433 4444444445555444444 34444444444444444444444 4444444444444454444


Q ss_pred             cccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccc
Q 042271          114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETE  193 (517)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  193 (517)
                      |.+. ..|+.++.+..|+.++..+|++.. .|. ++..+.++..+++.+|.+...+.....                   
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~-------------------  181 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQISS-LPE-DMVNLSKLSKLDLEGNKLKALPENHIA-------------------  181 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhcccccccc-Cch-HHHHHHHHHHhhccccchhhCCHHHHH-------------------
Confidence            4444 344444444444444444444432 333 344444444444444442221111000                   


Q ss_pred             cccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccc
Q 042271          194 SHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH  273 (517)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  273 (517)
                              +.+|+.++...+.. ..+|..++.+.+|..++++.+.+. .+|+  |.+++.|+++.++.|.+.........
T Consensus       182 --------m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~  249 (565)
T KOG0472|consen  182 --------MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLK  249 (565)
T ss_pred             --------HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhc
Confidence                    11222222222211 345555666666666666666665 4453  24566666666666665444444444


Q ss_pred             cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhH--------
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM--------  345 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--------  345 (517)
                      .++++..||+.+|+++ ++|.++.. +.+|.+|++++|.++ ..|..++.+ +|+.|-+.||.+. .+-..+        
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEV  324 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHH
Confidence            5666667777777766 66666665 566777777777666 455566666 6666666666543 110000        


Q ss_pred             ---------------------------------HhhcCCCcEEEccCCcccccccccccCC--CCCcEEEccCcccc---
Q 042271          346 ---------------------------------AARCFSLEILALSNNSLQGHIFSEKFNL--TNLMTLQLDGNKFT---  387 (517)
Q Consensus       346 ---------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~~~~~---  387 (517)
                                                       .....+.+.|++++-+++......|..-  .-....++++|++.   
T Consensus       325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP  404 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP  404 (565)
T ss_pred             HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence                                             0112234445555444443332222211  12344444444332   


Q ss_pred             --------------------cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271          388 --------------------GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS  447 (517)
Q Consensus       388 --------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  447 (517)
                                          +..+..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|..++.+..
T Consensus       405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence                                244555666777777777777666 66777777777777888777777 56777766666


Q ss_pred             ccEEEccCCccccCCCC-CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          448 LKILDLSNNSIFRTLPS-CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       448 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      ++.+-.++|++....+. ...+.+|..|++.+|++. .+|..+.+|++|++|++.||||.
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            66666677777555555 333788899999999988 44556899999999999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=4.5e-35  Score=257.91  Aligned_cols=455  Identities=22%  Similarity=0.230  Sum_probs=331.4

Q ss_pred             cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEE
Q 042271            6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVL   85 (517)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L   85 (517)
                      .+..+.++.|  ......+ . +.++..+.+|+++++....+++ +++.+..++.++.++|.+. .+|..+..+..|+.+
T Consensus        46 ~l~~lils~N--~l~~l~~-d-l~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   46 DLQKLILSHN--DLEVLRE-D-LKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL  119 (565)
T ss_pred             chhhhhhccC--chhhccH-h-hhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence            3556777777  4333322 2 6888899999999888888887 8888999999999999888 788889999999999


Q ss_pred             EccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCC
Q 042271           86 YASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF  165 (517)
Q Consensus        86 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  165 (517)
                      ++++|.+. ..++.++.+..|+.++-.+|++. ..|+++..+.+|..+++.+|+++. .++. .-.++.|++|+...|..
T Consensus       120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~-~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPEN-HIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHH-HHHHHHHHhcccchhhh
Confidence            99999888 67788899999999999999988 778888888999999999998864 5553 33488899999888875


Q ss_pred             CCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCCh
Q 042271          166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN  245 (517)
Q Consensus       166 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  245 (517)
                      .+.+.   .+..+.+|+.+++.....  ..+..+..+..|+++.++.+.+..-..+...+++++..++++++++. +.|+
T Consensus       196 ~tlP~---~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd  269 (565)
T KOG0472|consen  196 ETLPP---ELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD  269 (565)
T ss_pred             hcCCh---hhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence            44443   445555566555554322  23345667778889999888775544455568999999999999998 6777


Q ss_pred             hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhc-----cCCCcE----EEccCCc---C
Q 042271          246 WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY-----LPGLMD----LNLSRNA---F  313 (517)
Q Consensus       246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~----L~l~~~~---i  313 (517)
                      .+ .-+.+|.+|++++|.++.. +..++++ +|+.|.+.||.+. .+-+.+.+.     ++.|+.    =-++...   -
T Consensus       270 e~-clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  270 EI-CLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             HH-HHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            65 4678899999999998665 4557777 9999999999875 222222110     111111    0000000   0


Q ss_pred             C-C----CCchhhhcCCCCcEEeccccccccccchhHHhhcC--CCcEEEccCCc-----------------------cc
Q 042271          314 N-G----SIPSSFADMKMLERVDISYNQLTGEIPERMAARCF--SLEILALSNNS-----------------------LQ  363 (517)
Q Consensus       314 ~-~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~--~L~~L~l~~n~-----------------------~~  363 (517)
                      + .    ........+.+.+.|++++-+++ .+|.+.|....  -....+++.|.                       ..
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence            0 0    00001112234445555555544 44444443221  13344444442                       33


Q ss_pred             ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271          364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  443 (517)
                      ++++..++.+++|..|++++|.+. ..|..++.+..|++|+++.|.+. .+|.++..+..++.+-.++|++....++.+.
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence            466667778999999999999987 67788888889999999999998 8899999999999999999999977777799


Q ss_pred             CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCc
Q 042271          444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG  483 (517)
Q Consensus       444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  483 (517)
                      ++.+|+.||+.+|.+..+.|..-.+.+|++|++.+|.|..
T Consensus       503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence            9999999999999997777777779999999999999983

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=7.2e-34  Score=275.24  Aligned_cols=468  Identities=27%  Similarity=0.306  Sum_probs=284.8

Q ss_pred             CceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEE
Q 042271            7 LEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLY   86 (517)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~   86 (517)
                      +..|+++.|  -+...-.++ ..++.+|++|+++++.+...|. .+..+++|+.|+++.|.+. ..|.+..++.+|+++.
T Consensus        23 ~~~ln~~~N--~~l~~pl~~-~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   23 LQILNLRRN--SLLSRPLEF-VEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLN   97 (1081)
T ss_pred             HHhhhcccc--ccccCchHH-hhheeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhe
Confidence            445555555  322222233 4455557777777777777776 6667777777777777776 5566677777777777


Q ss_pred             ccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCC-------------------ccccccCCC
Q 042271           87 ASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN-------------------QLTQNISSS  147 (517)
Q Consensus        87 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~~~~~~~~  147 (517)
                      |.+|... ..|..+..+.+|++|+++.|.+. .+|..+..++.+..+..++|                   .+.+.+.. 
T Consensus        98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~-  174 (1081)
T KOG0618|consen   98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI-  174 (1081)
T ss_pred             eccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc-
Confidence            7777665 66777777777777777777766 55665655555555555555                   33222222 


Q ss_pred             cccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccC
Q 042271          148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH  227 (517)
Q Consensus       148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  227 (517)
                      ++..+++  .|++.+|.+.     ...+..+..|+.+...........    ...++++.+..++|..+...  ......
T Consensus       175 ~i~~l~~--~ldLr~N~~~-----~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~--~~p~p~  241 (1081)
T KOG0618|consen  175 DIYNLTH--QLDLRYNEME-----VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLD--VHPVPL  241 (1081)
T ss_pred             chhhhhe--eeecccchhh-----hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeec--cccccc
Confidence            2222222  3666666532     112333333333332221110000    01114444555544443111  111233


Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      +++.++++.+.+. .+|.|+ ..+.+|+.+...+|.++. .+..+....+|+.+.+..|.+. .+|..... +..|+.|+
T Consensus       242 nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLd  316 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWI-GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLD  316 (1081)
T ss_pred             cceeeecchhhhh-cchHHH-HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeee
Confidence            4555555555555 344443 455555555555555522 2233334445555555555554 44433332 45555555


Q ss_pred             ccCCcCCCCCchhhhcCCC-CcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccc
Q 042271          308 LSRNAFNGSIPSSFADMKM-LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF  386 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~  386 (517)
                      +..|.+.......+..... |+.+..+.+.+. ..|..-...++.|+.|.+.+|.+++.....+.++++|+.|++++|++
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            5555555322222222222 344444444443 33322222355688888888988888888888999999999999999


Q ss_pred             ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271          387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      ..+....+.+++.|++|+++||+++ .+|.....++.|++|...+|.+. ..| .+..+++|+.+|++.|+++.......
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            8767777888999999999999998 78888999999999999999988 567 67788999999999999876655544


Q ss_pred             Cc-ccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271          467 SP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       467 ~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      .+ ++|++|++++|.=.......|..+.++...++.-++
T Consensus       473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~  511 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN  511 (1081)
T ss_pred             CCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence            45 899999999997554566778888888888777663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.4e-33  Score=269.82  Aligned_cols=462  Identities=24%  Similarity=0.259  Sum_probs=320.3

Q ss_pred             eeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccC
Q 042271           10 LDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS   89 (517)
Q Consensus        10 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~   89 (517)
                      +|++.++  . ..+|.. +-....++.|+++.|..-..|.++..+..+|+.|++++|++. ..|..+..+.+|+.|.++.
T Consensus         3 vd~s~~~--l-~~ip~~-i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    3 VDASDEQ--L-ELIPEQ-ILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR   77 (1081)
T ss_pred             ccccccc--C-cccchh-hccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence            5566552  2 334444 333344999999988888877777888888999999999988 7899999999999999999


Q ss_pred             CccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC-CCCC
Q 042271           90 NELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH-FFQS  168 (517)
Q Consensus        90 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~  168 (517)
                      |.|. ..|....++.+|++++|.+|... ..|..+..+++|+.|+++.|++. .+|. .+..++.+..+..++|. +...
T Consensus        78 n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~l  153 (1081)
T KOG0618|consen   78 NYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRL  153 (1081)
T ss_pred             hhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhh
Confidence            9998 77888999999999999999987 88999999999999999999995 4666 68888888888888882 1111


Q ss_pred             CCCcccccCcccccccccccccccccccCCCCCcceee-EeeccccccCCCcccccccc--------------------C
Q 042271          169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLT-FISLSGYIDGGTFPKFLYHQ--------------------H  227 (517)
Q Consensus       169 ~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~--------------------~  227 (517)
                      +...        .+.+++..............   .++ .+++..+.+.   ...+..+                    +
T Consensus       154 g~~~--------ik~~~l~~n~l~~~~~~~i~---~l~~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g~  219 (1081)
T KOG0618|consen  154 GQTS--------IKKLDLRLNVLGGSFLIDIY---NLTHQLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISGP  219 (1081)
T ss_pred             cccc--------chhhhhhhhhcccchhcchh---hhheeeecccchhh---hhhhhhccchhhhhhhhcccceEEecCc
Confidence            1110        12222221111111111111   111 2444444332   1112222                    3


Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      +++.++...|.+....+.   ....+++.++++.+.+.... ..+..+.+|+.+....|.++ .+|..++. ..+|+.|.
T Consensus       220 ~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~  293 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLS  293 (1081)
T ss_pred             chheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHH
Confidence            444444444444422111   12345566666666555443 45556666666666666664 55555544 45666666


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC-CcEEEccCCcccccccccccCCCCCcEEEccCccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS-LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF  386 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~  386 (517)
                      ...|.+. -++....+.+.|+.|++..|++. ..|+..+.-... ++.++.+.+.+.......-...+.|+.|++.+|.+
T Consensus       294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            6666655 44555566677777777777776 666655554333 66666666666543323333567899999999999


Q ss_pred             ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271          387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      ++.....+.+..+|+.|++++|.+.......+.++..|+.|++++|++. .+|.++..++.|++|...+|++. ..|...
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~  449 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELA  449 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhh
Confidence            9888888999999999999999998555577899999999999999999 68899999999999999999984 455666


Q ss_pred             CcccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271          467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       467 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      .+++|+.+|++.|.++-.....-...++|+.||++||.
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            69999999999999975433222333899999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=8.9e-33  Score=256.76  Aligned_cols=386  Identities=27%  Similarity=0.320  Sum_probs=310.4

Q ss_pred             hhcccCcEEEecCCccc-CCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCc
Q 042271           53 RQLVHLQELYIGGYDLR-GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR  131 (517)
Q Consensus        53 ~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  131 (517)
                      +-++-.|-+|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|+++ .+-..+..++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            45677888999999997 568899999999999999999888 78999999999999999999987 4556688999999


Q ss_pred             EEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecc
Q 042271          132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS  211 (517)
Q Consensus       132 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  211 (517)
                      .+.+++|++.....+..+..+..|+.|++++|+..                                             
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~---------------------------------------------  116 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR---------------------------------------------  116 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh---------------------------------------------
Confidence            99999999876444448889999999999999742                                             


Q ss_pred             ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc
Q 042271          212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH  291 (517)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  291 (517)
                            ..|..+....++-.|+++.|++. .+|..++-++..|-.|++++|.+. ..++..+.+..|++|++++|.+. .
T Consensus       117 ------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-h  187 (1255)
T KOG0444|consen  117 ------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-H  187 (1255)
T ss_pred             ------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-H
Confidence                  33444555566777788888877 677777778888888899988874 44566778889999999998764 2


Q ss_pred             CChhhhhccCCCcEEEccCCcCC-CCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc
Q 042271          292 IPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK  370 (517)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  370 (517)
                      ..-.....+++|+.|.+++++-+ .-+|.++..+.+|..+|++.|++. .+|+..+ .+++|+.|++++|.++... ...
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~  264 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTE  264 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccH
Confidence            22222222678888999988655 357889999999999999999998 7776655 4899999999999998533 455


Q ss_pred             cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCCCcccccccccccCCCCcc
Q 042271          371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK  449 (517)
Q Consensus       371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  449 (517)
                      ....+|++|+++.|+++ ..|.++..++.|+.|...+|++.- .+|+.++.+..|+.+...+|.+. .+|..+.+|+.|+
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence            56789999999999998 789999999999999999998763 57888999999999999999988 8999999999999


Q ss_pred             EEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEEC
Q 042271          450 ILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL  500 (517)
Q Consensus       450 ~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l  500 (517)
                      .|.|++|.+.. .|.++. ++.|+.|++..|.--..+|.-=..-++|+.-++
T Consensus       343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             Hhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            99999999855 455554 899999999999744344332222245554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1e-31  Score=249.74  Aligned_cols=367  Identities=24%  Similarity=0.271  Sum_probs=277.5

Q ss_pred             CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271            4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ   83 (517)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   83 (517)
                      ++=+|-.|+++|  +++|.........+..++.|.|.......+|. .++.+.+|++|.+++|++. .+-+.+..++.|+
T Consensus         6 LpFVrGvDfsgN--DFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGN--DFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCC--cCCCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            566788999999  88855444448999999999999999999997 8999999999999999998 5677789999999


Q ss_pred             EEEccCCccC-CCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271           84 VLYASSNELT-GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN  162 (517)
Q Consensus        84 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (517)
                      .+.++.|.+. ..+|..+-++..|+.|||++|+++ ..|..+..-+++-.|+|++|+|. .+|...+.+++.|-.|++++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence            9999998775 457888999999999999999998 78999999999999999999995 58887889999999999999


Q ss_pred             CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271          163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK  242 (517)
Q Consensus       163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  242 (517)
                      |+..                                                   .+|..+.++..|+.|.+++|.+.-.
T Consensus       160 NrLe---------------------------------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  160 NRLE---------------------------------------------------MLPPQIRRLSMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             chhh---------------------------------------------------hcCHHHHHHhhhhhhhcCCChhhHH
Confidence            9841                                                   2344444555555555555543311


Q ss_pred             CChhhhhcccccceEeccCCccC-CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhh
Q 042271          243 FPNWLVENNANLERLLLADNSLF-GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF  321 (517)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  321 (517)
                      -...+ -.+.+|+.|.+++.+-+ ..++..+..+.+|..++++.|.+. .+|...+. +++|+.|++++|.++ ......
T Consensus       189 QLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  189 QLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             HHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCcee-eeeccH
Confidence            00000 12345566666665432 344556666777777778777776 77777766 778888888888777 333344


Q ss_pred             hcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccc-cccccccCCCCCcEEEccCcccccccchhhhhcccC
Q 042271          322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLL  400 (517)
Q Consensus       322 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  400 (517)
                      ..-.+|+.|++++|.++ .+|..... +++|+.|.+.+|+++- -++..++.+.+|+.+...+|.+. ..|+.+++|+.|
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence            55567777888888777 66666554 7777777777777763 35566777777888888877776 677888888888


Q ss_pred             CeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271          401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      +.|.++.|.+. .+|+++.-++.|+.|++.+|.-.
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            88888888777 67777777888888888777654

>PLN03210 Resistant to P

Probab=99.92  E-value=8.3e-23  Score=220.74  Aligned_cols=343  Identities=20%  Similarity=0.157  Sum_probs=162.2

Q ss_pred             cchhhhhhcccCcEEEecCCcc------cCCccccccCC-CCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCc
Q 042271           47 ILDQGLRQLVHLQELYIGGYDL------RGSLPWCLANM-TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS  119 (517)
Q Consensus        47 ~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~  119 (517)
                      +...+|.++++|+.|.+..+..      ...+|..+..+ .+|+.|.+.++.+. .+|..+ ...+|++|+++++.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            3445666677777776654421      11244444444 34666666666555 455544 3466666666666665 4


Q ss_pred             ccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCC
Q 042271          120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSL  199 (517)
Q Consensus       120 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~  199 (517)
                      ++..+..+++|+.|+++++.....++  .+..+++|++|++++|.... .. ...+.                       
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~-~l-p~si~-----------------------  678 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLV-EL-PSSIQ-----------------------  678 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCcc-cc-chhhh-----------------------
Confidence            55556666666666666654333333  25556666666666654110 00 00111                       


Q ss_pred             CCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCccc
Q 042271          200 TPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLA  279 (517)
Q Consensus       200 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  279 (517)
                       ...+|+.+++.+|.....+|..+ .+++|+.|++++|.....+|.    ...+|+.|+++++.+.... . ...+++|+
T Consensus       679 -~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP-~-~~~l~~L~  750 (1153)
T PLN03210        679 -YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFP-S-NLRLENLD  750 (1153)
T ss_pred             -ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccc-c-cccccccc
Confidence             11234444444443333333332 455566666666544433332    1245556666555543221 1 11344555


Q ss_pred             EEEccCCccc---c---cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271          280 TLDVSNNFFR---G---HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE  353 (517)
Q Consensus       280 ~L~l~~~~~~---~---~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  353 (517)
                      +|.+.++...   +   .++......+++|+.|++++|.....+|..+..+++|+.|++++|.....+|...  .+++|+
T Consensus       751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~  828 (1153)
T PLN03210        751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLE  828 (1153)
T ss_pred             cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccC
Confidence            5555443211   0   0111111123455555555554444455555555555555555554333444332  345555


Q ss_pred             EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCc
Q 042271          354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN  433 (517)
Q Consensus       354 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  433 (517)
                      .|++++|......+.   ..++|+.|++++|.+. ..|..+..+++|+.|++++|.-...+|.....+++|+.+++++|.
T Consensus       829 ~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        829 SLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            555555432221111   1234555555555554 334444555555555555543322344444445555555555543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=3.3e-26  Score=201.86  Aligned_cols=404  Identities=21%  Similarity=0.179  Sum_probs=250.6

Q ss_pred             CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccC-CccCCCCCcchhccccCcEE
Q 042271           31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS-NELTGNISPGLCELVLMREL  109 (517)
Q Consensus        31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L  109 (517)
                      .+...+++|..|.|..+|+++|+.+++||.|||++|.|+.+-|++|.+++.|-.|-+.+ |+|+......|+.+..|+-|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999998888777 89995555678999999999


Q ss_pred             EccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccc
Q 042271          110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEIC  189 (517)
Q Consensus       110 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  189 (517)
                      .+..|++..+..++|..+++|..|.+.+|.+. .+....+..+..++.+.+..|++ ..      ..+++++....... 
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~-ic------dCnL~wla~~~a~~-  216 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF-IC------DCNLPWLADDLAMN-  216 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc-cc------ccccchhhhHHhhc-
Confidence            99999999888899999999999999999985 46666889999999999998872 22      22333222111000 


Q ss_pred             cccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271          190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW  269 (517)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  269 (517)
                                                    +..++......-..+...++...-+..+......+.+-.-          
T Consensus       217 ------------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~----------  256 (498)
T KOG4237|consen  217 ------------------------------PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS----------  256 (498)
T ss_pred             ------------------------------hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc----------
Confidence                                          0000111111111112222221222221111111111000          


Q ss_pred             cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhc
Q 042271          270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARC  349 (517)
Q Consensus       270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~  349 (517)
                                    +.+..-+..|..-+..+++|++|++++|.++.+-..+|.+...+++|.+.+|++. .+...+|.++
T Consensus       257 --------------~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~l  321 (498)
T KOG4237|consen  257 --------------SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGL  321 (498)
T ss_pred             --------------cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhcc
Confidence                          1111112334444444666666666666666555556666666666666666665 5555666666


Q ss_pred             CCCcEEEccCCcccccccccccCCCCCcEEEccCccccc-----ccchh-----------hhhcccCCeEEecCCCCCC-
Q 042271          350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG-----EILES-----------LSKCYLLEGLYLSDNHLTG-  412 (517)
Q Consensus       350 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-----------~~~~~~L~~L~l~~~~~~~-  412 (517)
                      ..|+.|++++|+++...+.+|.....|.+|++-.|+..-     ...+.           -.....++.+.+++..+.+ 
T Consensus       322 s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~  401 (498)
T KOG4237|consen  322 SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDF  401 (498)
T ss_pred             ccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccc
Confidence            666666666666666666666666666666665554320     00000           0112346666666654432 


Q ss_pred             --ccc---------hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcC
Q 042271          413 --EIP---------RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI  481 (517)
Q Consensus       413 --~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  481 (517)
                        ..|         ..-..++-+.++.=..++..+.+|..+-  ..-.++++.+|.++.....  ...+| .+++++|++
T Consensus       402 ~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i  476 (498)
T KOG4237|consen  402 RCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRI  476 (498)
T ss_pred             ccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCce
Confidence              111         1122234444433333444434554432  2567788888887554443  35777 888888888


Q ss_pred             CccchhhhcCCCcccEEECCCC
Q 042271          482 EGRLESIIHDSPHLVTLDLSCN  503 (517)
Q Consensus       482 ~~~~~~~l~~~~~L~~l~l~~n  503 (517)
                      ....-..|.+++.|.+|-|++|
T Consensus       477 ~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  477 SSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ehhhcccccchhhhheeEEecC
Confidence            8666678888888888888876

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=211.88  Aligned_cols=338  Identities=21%  Similarity=0.225  Sum_probs=248.1

Q ss_pred             ccCCCCcceEEecccccc-------CCcchhhhhhc-ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCc
Q 042271           27 VGESKPSLKFLSLINSSK-------NTILDQGLRQL-VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISP   98 (517)
Q Consensus        27 ~~~~~~~L~~L~l~~~~~-------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~   98 (517)
                      .+..+++|+.|.+..+..       ..++. .+..+ .+||.|++.++.+. .+|..+ ...+|++|+++++.+. .++.
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            378889999998874432       12333 45555 46999999998887 666666 5689999999999887 6777


Q ss_pred             chhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc
Q 042271           99 GLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL  178 (517)
Q Consensus        99 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  178 (517)
                      .+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|. .+..+++|+.|++++|.. ....+.      
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~-L~~Lp~------  699 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCEN-LEILPT------  699 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCC-cCccCC------
Confidence            788899999999998765445664 78889999999999876555665 688899999999998752 111100      


Q ss_pred             ccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEe
Q 042271          179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLL  258 (517)
Q Consensus       179 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  258 (517)
                                          .....+|+.|.+.+|.....+|..   ..+|+.|+++++.+. .+|..+  .+++|++|.
T Consensus       700 --------------------~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~  753 (1153)
T PLN03210        700 --------------------GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELI  753 (1153)
T ss_pred             --------------------cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--ccccccccc
Confidence                                001236667777777555555543   457889999999876 566543  578888888


Q ss_pred             ccCCccCC-------CcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271          259 LADNSLFG-------SFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       259 l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  331 (517)
                      +.++....       ........+++|+.|++++|.....+|..+.. +++|+.|++++|...+.+|..+ .+++|+.|+
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~  831 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLD  831 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence            87643211       11112234578999999999766688888776 9999999999996544566555 689999999


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL  410 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  410 (517)
                      +++|.....+|..    .++|+.|++++|.++. ++..+..+++|+.|++++|.-....+..+..+++|+.+++++|.-
T Consensus       832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        832 LSGCSRLRTFPDI----STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCCcccccccc----ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            9999765455532    4689999999999874 456788999999999999764445666778889999999999953

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=3.1e-23  Score=183.25  Aligned_cols=290  Identities=16%  Similarity=0.139  Sum_probs=201.9

Q ss_pred             cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecC-CcccCCccccccCCCCCcE
Q 042271            6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGG-YDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~   84 (517)
                      .-.++.|-.|+|   ..+|..+++.+++||+|||++|.|+.|.+++|.+++.|..|.+.+ |+|+...-+.|+++..|+.
T Consensus        68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            445678888844   466777799999999999999999999999999999999998877 8999777789999999999


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH  164 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (517)
                      |.+..|++.-.....|..+++|..|.+..|.+..+.-..|..+..++++.+..|.+..      .-+++.+.... .-++
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~-a~~~  217 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDL-AMNP  217 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhHH-hhch
Confidence            9999999886666789999999999999999985544589999999999999887532      12223222221 1111


Q ss_pred             CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccc-cccCCcCEeeccCCcCCCCC
Q 042271          165 FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFL-YHQHDLKNADLSHLNLSGKF  243 (517)
Q Consensus       165 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~  243 (517)
                      +..     .+.....   -..+..                        ..+...-++.+ .....+.+--...+...+..
T Consensus       218 iet-----sgarc~~---p~rl~~------------------------~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c  265 (498)
T KOG4237|consen  218 IET-----SGARCVS---PYRLYY------------------------KRINQEDARKFLCSLESLPSRLSSEDFPDSIC  265 (498)
T ss_pred             hhc-----ccceecc---hHHHHH------------------------HHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence            111     1111100   000000                        00000000000 01111111112233344456


Q ss_pred             ChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhc
Q 042271          244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD  323 (517)
Q Consensus       244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~  323 (517)
                      |..-+..+++|+++++++|+++.+...+|....++++|.+..|++. .+...++..+..|+.|++.+|+|+...|.+|..
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            6666777888888888888888777777888888888888888886 667777777888888888888888777778888


Q ss_pred             CCCCcEEeccccccc
Q 042271          324 MKMLERVDISYNQLT  338 (517)
Q Consensus       324 l~~L~~L~l~~~~i~  338 (517)
                      ...|.+|.+-.|...
T Consensus       345 ~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPFN  359 (498)
T ss_pred             cceeeeeehccCccc
Confidence            888888888777554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=4.7e-19  Score=178.06  Aligned_cols=264  Identities=23%  Similarity=0.283  Sum_probs=201.8

Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +-..|+++.+.+. .+|..+.  ++++.|.+.+|+++ .+|.    ..++|++|++++|.++....    ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeec
Confidence            3456777777665 4666554  47899999999888 4554    35889999999998875431    2468999999


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ  363 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  363 (517)
                      ++|.+. .+|.    .+++|+.|++++|.++. +|.   ..++|+.|++++|.+. .+|.    ...+|+.|++++|.++
T Consensus       270 s~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~  335 (788)
T PRK15387        270 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT  335 (788)
T ss_pred             cCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc
Confidence            999886 5554    24689999999999883 443   3578999999999988 5554    1347889999999887


Q ss_pred             ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271          364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  443 (517)
                      ... .   ..++|+.|++++|++.. .|..   .++|+.|++++|++. .+|..   ..+|+.|++++|.+.. +|..  
T Consensus       336 ~LP-~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--  400 (788)
T PRK15387        336 SLP-T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--  400 (788)
T ss_pred             ccc-c---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc--
Confidence            532 1   23589999999999984 3332   357899999999998 45543   3679999999999984 5533  


Q ss_pred             CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271          444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                       .++|+.|++++|+++. .|..  +.+|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|..+
T Consensus       401 -~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        401 -PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             -ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence             3689999999999965 3432  468999999999998 457778899999999999999999888766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=2.8e-19  Score=168.70  Aligned_cols=273  Identities=24%  Similarity=0.187  Sum_probs=168.0

Q ss_pred             eeccCCcCCCCCChhhhhcccccceEeccCCccCCC----cccccccCCcccEEEccCCcccc------cCChhhhhccC
Q 042271          232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS----FWMPIHSHQKLATLDVSNNFFRG------HIPVEIGTYLP  301 (517)
Q Consensus       232 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~  301 (517)
                      |++..+.+.+.....++..+..+++++++++.+.+.    +...+...+.+++++++++.+.+      .++..+.. ++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence            344444444333333344555677777776665332    22234455567777777665541      11122223 66


Q ss_pred             CCcEEEccCCcCCCCCchhhhcCCC---CcEEeccccccccccchh---HHhhc-CCCcEEEccCCccccc----ccccc
Q 042271          302 GLMDLNLSRNAFNGSIPSSFADMKM---LERVDISYNQLTGEIPER---MAARC-FSLEILALSNNSLQGH----IFSEK  370 (517)
Q Consensus       302 ~L~~L~l~~~~i~~~~~~~~~~l~~---L~~L~l~~~~i~~~~~~~---~~~~~-~~L~~L~l~~n~~~~~----~~~~~  370 (517)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|.+.+.....   ....+ ++|+.|++++|.+++.    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888888776545555554444   888888888776322211   22234 6788888888877632    22345


Q ss_pred             cCCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCcccccccccc
Q 042271          371 FNLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGPIPIEF  442 (517)
Q Consensus       371 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  442 (517)
                      ..++.|++|++++|.+.+..    ...+..+++|+.|++++|.+.+.    ++..+..+++|+.|++++|.+.+.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            56678888888888876422    22344556888888888887643    33456667888888888888765222222


Q ss_pred             c-----CCCCccEEEccCCccccCCCCCC-----CcccccEEEccCCcCCcc----chhhhcCC-CcccEEECCCCcC
Q 042271          443 C-----QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHLSKNKIEGR----LESIIHDS-PHLVTLDLSCNSL  505 (517)
Q Consensus       443 ~-----~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~l~~~-~~L~~l~l~~n~~  505 (517)
                      .     ..++|++|++++|.+++.....+     ..++|+.+++++|.++..    ...++... +.|+++++.+|++
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            1     24789999999988863222111     147889999999998855    44555555 7899999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=1.6e-17  Score=167.22  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=47.0

Q ss_pred             ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271           56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV  135 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L  135 (517)
                      ..-..|+++++.++ .+|..+.  ++|+.|+++.|.++ .+|..   .++|++|++++|.++ .+|..   .++|++|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            34455666666665 4444443  25666666666665 34431   355666666666655 23321   245556666


Q ss_pred             cCCccccccCCCcccCCCCCceeecccCC
Q 042271          136 SDNQLTQNISSSPLMHLTSIEELILSNNH  164 (517)
Q Consensus       136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (517)
                      ++|.+.. ++.    ..++|+.|++++|.
T Consensus       270 s~N~L~~-Lp~----lp~~L~~L~Ls~N~  293 (788)
T PRK15387        270 FSNPLTH-LPA----LPSGLCKLWIFGNQ  293 (788)
T ss_pred             cCCchhh-hhh----chhhcCEEECcCCc
Confidence            6655532 222    11345555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=2.7e-17  Score=166.54  Aligned_cols=247  Identities=21%  Similarity=0.331  Sum_probs=137.8

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      +...+++.+..++ .+|..+   .+.++.|++++|.+..... .+  +++|+.|++++|.++ .+|..+   .++|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLT-SIPATL---PDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence            3445556555555 344322   2456666666666554322 11  246666666666665 555443   23566677


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      +++|.+. .+|..+.  .+|+.|++++|++. .+|..+   +++|+.|++++|.++... ..+  .++|+.|++++|.+.
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence            7766665 3444332  45666777766665 455433   236667777776665422 111  235666677766665


Q ss_pred             cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271          388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS  467 (517)
Q Consensus       388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  467 (517)
                      . .+..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|+++...+..  
T Consensus       318 ~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--  386 (754)
T PRK15370        318 A-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL--  386 (754)
T ss_pred             c-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--
Confidence            3 22222  246777777777666 3444332  56777777777666 344444  246777777777765433221  


Q ss_pred             cccccEEEccCCcCCcc---chhhhcCCCcccEEECCCCcCC
Q 042271          468 PASIEQLHLSKNKIEGR---LESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       468 ~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      ..+|+.|++++|+++..   ++..+..++.+..+++.+|+++
T Consensus       387 ~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            34677777777776643   2233444566777777777764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=3.5e-18  Score=161.24  Aligned_cols=251  Identities=24%  Similarity=0.261  Sum_probs=182.6

Q ss_pred             eEeccCCccCC-CcccccccCCcccEEEccCCccccc----CChhhhhccCCCcEEEccCCcCCC------CCchhhhcC
Q 042271          256 RLLLADNSLFG-SFWMPIHSHQKLATLDVSNNFFRGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM  324 (517)
Q Consensus       256 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~------~~~~~~~~l  324 (517)
                      .|++..+.+.+ .....+..+..|+.++++++.+++.    ++.... ..+++++++++++.+..      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            35666666653 2334456677899999999988532    222222 36779999999998762      133567778


Q ss_pred             CCCcEEeccccccccccchhHHhhcCC---CcEEEccCCccccc----ccccccCC-CCCcEEEccCcccccc----cch
Q 042271          325 KMLERVDISYNQLTGEIPERMAARCFS---LEILALSNNSLQGH----IFSEKFNL-TNLMTLQLDGNKFTGE----ILE  392 (517)
Q Consensus       325 ~~L~~L~l~~~~i~~~~~~~~~~~~~~---L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~  392 (517)
                      ++|++|++++|.+.+..+.. +..+.+   |+.|++++|.+++.    ....+..+ ++|++|++++|.++..    ...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            99999999999987444333 333444   99999999988742    22344566 8999999999998732    334


Q ss_pred             hhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCC
Q 042271          393 SLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       393 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      .+..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+.+.    +...+..+++|++|++++|++++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            566778999999999998842    334456668999999999998643    344567789999999999998753222


Q ss_pred             CCC------cccccEEEccCCcCCc----cchhhhcCCCcccEEECCCCcCCCC
Q 042271          465 CFS------PASIEQLHLSKNKIEG----RLESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       465 ~~~------~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      .+.      .+.|++|++++|.++.    .....+..+++|+.+++++|.++..
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            221      3799999999999973    2456777779999999999999743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=3.9e-16  Score=158.28  Aligned_cols=230  Identities=26%  Similarity=0.373  Sum_probs=177.4

Q ss_pred             cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271          252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  331 (517)
                      .+...|++++..++.... .+  .+.++.|++++|.++ .+|...+   ++|++|++++|.++ .+|..+.  ++|+.|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTTIPA-CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            456788898887765432 22  357999999999998 7787654   58999999999998 4555443  5799999


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|.+. .+|..+.   ++|+.|++++|.+.. ++..+  +++|+.|++++|.++. .+..+.  ++|+.|++++|.+.
T Consensus       248 Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh---CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            9999998 7777653   489999999999885 33333  3689999999999984 443332  47999999999998


Q ss_pred             CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcC
Q 042271          412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD  491 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  491 (517)
                       .+|..+  .++|+.|++++|.+.. +|..+  .++|+.|++++|+++. .+..+ +++|++|++++|.++..++...  
T Consensus       318 -~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l-p~~L~~LdLs~N~Lt~LP~~l~--  387 (754)
T PRK15370        318 -ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETL-PPTITTLDVSRNALTNLPENLP--  387 (754)
T ss_pred             -cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhh-cCCcCEEECCCCcCCCCCHhHH--
Confidence             455443  3789999999999984 66555  3799999999999964 34333 5799999999999996655433  


Q ss_pred             CCcccEEECCCCcCCCCCCccc
Q 042271          492 SPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       492 ~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                       ++|+.|++++|+++ .+|.++
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhH
Confidence             37999999999998 666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=8.9e-17  Score=126.21  Aligned_cols=159  Identities=23%  Similarity=0.358  Sum_probs=113.2

Q ss_pred             CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271            3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL   82 (517)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   82 (517)
                      .+.+++.|.+|.|.  ++ .++.- ++.+.+|+.|++++|.++.+|. .++.++.||.|+++.|++. ++|..|+.++.|
T Consensus        31 ~~s~ITrLtLSHNK--l~-~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK--LT-VVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             chhhhhhhhcccCc--ee-ecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            34566777777773  32 23333 6777777888888777777776 7777778888888777776 777777778888


Q ss_pred             cEEEccCCccC-CCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecc
Q 042271           83 QVLYASSNELT-GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILS  161 (517)
Q Consensus        83 ~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~  161 (517)
                      +.||+.+|.+. ..+|..|..+..|+-|.++.|.++ .+|..++++++|+.|.+++|.+.. .|. .+..++.|++|.+.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpk-eig~lt~lrelhiq  181 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPK-EIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcH-HHHHHHHHHHHhcc
Confidence            88888777665 345566777777777777777777 677777888888888888777753 554 67777778888888


Q ss_pred             cCCCCCCCC
Q 042271          162 NNHFFQSPI  170 (517)
Q Consensus       162 ~~~~~~~~~  170 (517)
                      +|+....+.
T Consensus       182 gnrl~vlpp  190 (264)
T KOG0617|consen  182 GNRLTVLPP  190 (264)
T ss_pred             cceeeecCh
Confidence            777544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.51  E-value=3.5e-16  Score=122.91  Aligned_cols=180  Identities=24%  Similarity=0.367  Sum_probs=133.3

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +..++.|.+++|.++ .+|..+..+.+|+.|++.+|.+. ++|..+.+ +++|+.|++.-|.+. ..+..|+.+|.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence            456677777777776 55566777777777777777776 66665544 777777777776654 456778888888888


Q ss_pred             EccCccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271          380 QLDGNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       380 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  458 (517)
                      ++.+|.+.. ..|..|..+..|+.|++++|++. .+|...+.+.+|+.|.+++|.+. .+|..+..+.+|++|++.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            888887743 46777778888999999999998 78888899999999999999888 6888888999999999999998


Q ss_pred             ccCCCCCCC---cccccEEEccCCcCCccc
Q 042271          459 FRTLPSCFS---PASIEQLHLSKNKIEGRL  485 (517)
Q Consensus       459 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~  485 (517)
                      +-..|....   ..+=+++.+.+|.....+
T Consensus       186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             eecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            665555433   123334445555544333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=3.7e-14  Score=124.53  Aligned_cols=134  Identities=22%  Similarity=0.284  Sum_probs=88.8

Q ss_pred             CCCCCcEEEccCcccccc----cchhhhhcccCCeEEecCCCCCC----ccchhhcCCCCCcEEECCCCcccc----ccc
Q 042271          372 NLTNLMTLQLDGNKFTGE----ILESLSKCYLLEGLYLSDNHLTG----EIPRWLGNLSALEDIIMPNNNLEG----PIP  439 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~  439 (517)
                      .-+.|+++....|++.+.    ....+..++.|+.+.+..|.|..    .....+..+++|+.|++.+|-+..    .+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            456666776666665432    22345556677777777776543    233556677777777777776643    234


Q ss_pred             ccccCCCCccEEEccCCccccCCCCCCC------cccccEEEccCCcCCcc----chhhhcCCCcccEEECCCCcC
Q 042271          440 IEFCQLNSLKILDLSNNSIFRTLPSCFS------PASIEQLHLSKNKIEGR----LESIIHDSPHLVTLDLSCNSL  505 (517)
Q Consensus       440 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~l~l~~n~~  505 (517)
                      .++..+++|++|++++|.+......++.      .++|++|.+.+|.++..    +.......|.|+.|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4566677888888888887665544443      57888888888888643    344555678888888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=3.9e-13  Score=121.56  Aligned_cols=214  Identities=22%  Similarity=0.188  Sum_probs=111.0

Q ss_pred             cccccceEeccCCccCCCcc-cccccCCcccEEEccCCcccccCC-hhhhhccCCCcEEEccCCcCCCCCch-hhhcCCC
Q 042271          250 NNANLERLLLADNSLFGSFW-MPIHSHQKLATLDVSNNFFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM  326 (517)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~l~~  326 (517)
                      ++.+|+++.++++.+..... .....|++++.|+++.|-+....+ ..+...+|+|+.|+++.|.+...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            44566666776665533221 244566777777777765542211 23444567777777777765421111 1124456


Q ss_pred             CcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccccc-chhhhhcccCCeEEe
Q 042271          327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI-LESLSKCYLLEGLYL  405 (517)
Q Consensus       327 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  405 (517)
                      |+.|.++.|.++..-.......+|+|+.|.+.+|.....-.....-+..|++|+|++|.+-+.. .-....++.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            6666676666653222333445666666666666422222222334566666666666654221 123445666666666


Q ss_pred             cCCCCCCc-cchh-----hcCCCCCcEEECCCCccccc-ccccccCCCCccEEEccCCccccCCC
Q 042271          406 SDNHLTGE-IPRW-----LGNLSALEDIIMPNNNLEGP-IPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       406 ~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      +.+.+... .|.+     ...+++|+.|++..|++.+. .-..+..+++|+++.+-.|.++.+..
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence            66665531 1221     24456666666666666421 11234445566666666666544444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=9.5e-13  Score=115.80  Aligned_cols=133  Identities=25%  Similarity=0.313  Sum_probs=76.2

Q ss_pred             cCCCcEEEccCCcccccc----cccccCCCCCcEEEccCccccc----ccchhhhhcccCCeEEecCCCCCC----ccch
Q 042271          349 CFSLEILALSNNSLQGHI----FSEKFNLTNLMTLQLDGNKFTG----EILESLSKCYLLEGLYLSDNHLTG----EIPR  416 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~  416 (517)
                      -+.|+.+...+|.+.+..    ...+...+.|+.+.+..|.|..    .....+..|++|+.|++.+|-++.    .+..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            345666666666654322    2234455666666666666542    123455667777777777776553    2345


Q ss_pred             hhcCCCCCcEEECCCCcccccccccc-----cCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCCcC
Q 042271          417 WLGNLSALEDIIMPNNNLEGPIPIEF-----CQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKNKI  481 (517)
Q Consensus       417 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~~  481 (517)
                      .+..+++|+.+++.+|.+...-..+|     ...|+|+.+.+.+|.++........     -+.|++|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            56666677777777776653222221     2356777777777766543322221     46777777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.6e-12  Score=114.22  Aligned_cols=209  Identities=22%  Similarity=0.225  Sum_probs=102.3

Q ss_pred             cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCC--CCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG--SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      .+++|+.+.+.++.+...........||+++.|++++|-+..  .+......+|+|+.|+++.|.+........-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            445666666666665422111233346666666666665442  233344556666666666666543322222223456


Q ss_pred             CcEEEccCCcccc-cccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc-chhhcCCCCCcEEEC
Q 042271          352 LEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI-PRWLGNLSALEDIIM  429 (517)
Q Consensus       352 L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  429 (517)
                      |+.|.++.|.++. .+......+|+|+.|++.+|............+..|++|+|++|.+.... ......++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            6666666666552 12233345666666666666321111222233445666666666554211 133445566666666


Q ss_pred             CCCcccccc-ccc-----ccCCCCccEEEccCCccccCC--CCCCCcccccEEEccCCcCC
Q 042271          430 PNNNLEGPI-PIE-----FCQLNSLKILDLSNNSIFRTL--PSCFSPASIEQLHLSKNKIE  482 (517)
Q Consensus       430 ~~~~~~~~~-~~~-----~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~  482 (517)
                      +.|.+...- |+.     ....++|+.|++..|++.++.  .....+.+|+.|.+..|+++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            666554321 111     233455666666666553321  12222455555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=9.4e-12  Score=102.81  Aligned_cols=128  Identities=26%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             CCCCcceEEeccccccCCcchhhhh-hcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcch-hccccC
Q 042271           29 ESKPSLKFLSLINSSKNTILDQGLR-QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL-CELVLM  106 (517)
Q Consensus        29 ~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L  106 (517)
                      .++..+++|+|+++.+..+..  ++ .+.+|++|++++|.+...  +.+..++.|++|++++|.++ .+.+.+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             --------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            445556666666666666543  44 456666666666666522  23555666666666666666 333333 346666


Q ss_pred             cEEEccccccCCc-ccccccCCCCCcEEeccCCccccccC--CCcccCCCCCceeecc
Q 042271          107 RELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNIS--SSPLMHLTSIEELILS  161 (517)
Q Consensus       107 ~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~l~~l~~L~~L~l~  161 (517)
                      ++|++++|+|.+. ....+..+++|++|++.+|.+...-.  ...+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6666666665421 11234556666666666666543100  1123445556655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.19  E-value=1.6e-11  Score=127.06  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=91.9

Q ss_pred             cCceeeCCCccccccccchhhccCCCCcceEEeccccc--cCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271            6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSS--KNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ   83 (517)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   83 (517)
                      ..|++.+.++.  +... +.  -..++.|++|-+..+.  ...++.+.|..++.|++||+++|.--+.+|..++.+-+||
T Consensus       524 ~~rr~s~~~~~--~~~~-~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  524 SVRRMSLMNNK--IEHI-AG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             heeEEEEeccc--hhhc-cC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            44666666652  2111 11  3455678888888664  6677776788888888888887765557888888888888


Q ss_pred             EEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCc
Q 042271           84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ  139 (517)
Q Consensus        84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~  139 (517)
                      +|+++.+.+. .+|..++++..|.+|++..+.....+|.....+++|++|.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8888888887 778888888888888888776554556666668888888877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=9.1e-11  Score=96.99  Aligned_cols=129  Identities=27%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE  353 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  353 (517)
                      ++.++++|++.++.++ .+ +.+...+.+|+.|++++|.++..  ..+..++.|+.|++++|.+. .+.......+|+|+
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3446777888888775 33 23433367888888888888743  35677888888888888887 55444445678888


Q ss_pred             EEEccCCcccccc-cccccCCCCCcEEEccCcccccc---cchhhhhcccCCeEEecC
Q 042271          354 ILALSNNSLQGHI-FSEKFNLTNLMTLQLDGNKFTGE---ILESLSKCYLLEGLYLSD  407 (517)
Q Consensus       354 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~  407 (517)
                      .|++++|.+.+.. ...+..+++|+.|++.+|+++..   ....+..+|+|+.||-..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            8888888886532 34566788888888888887632   223456678888776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=3.7e-11  Score=124.38  Aligned_cols=156  Identities=24%  Similarity=0.277  Sum_probs=122.6

Q ss_pred             CCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCc--ccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271           29 ESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYD--LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM  106 (517)
Q Consensus        29 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  106 (517)
                      ......|+..+.++.+..+..  -..++.|++|-+.+|.  +.....++|..++.|++|||++|.-.+.+|+.++.+.+|
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            444678888888888877765  3456689999999986  565566778999999999999987666999999999999


Q ss_pred             cEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccc
Q 042271          107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS  186 (517)
Q Consensus       107 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l  186 (517)
                      ++|+++++.+. .+|..+.+++.|.+|++..+.....+ +.....+++|++|.+..............+.++.+|+.+..
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999999998 89999999999999999988764434 33556699999999987653334444455666666666665


Q ss_pred             cc
Q 042271          187 EI  188 (517)
Q Consensus       187 ~~  188 (517)
                      ..
T Consensus       676 ~~  677 (889)
T KOG4658|consen  676 TI  677 (889)
T ss_pred             ec
Confidence            44

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=2e-11  Score=105.22  Aligned_cols=131  Identities=34%  Similarity=0.352  Sum_probs=70.4

Q ss_pred             CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271          372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL  451 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  451 (517)
                      .++.|+++++++|.|+ .+.+...-.|.++.|+++.|.+.. .. .+..+++|+.|++++|.+.. ...+-..+-+.+.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence            3455555666665555 333444445556666666665542 21 25555666666666665552 22333445566666


Q ss_pred             EccCCccccCCCCCCCcccccEEEccCCcCCccch-hhhcCCCcccEEECCCCcCCC
Q 042271          452 DLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLE-SIIHDSPHLVTLDLSCNSLHG  507 (517)
Q Consensus       452 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~l~l~~n~~~~  507 (517)
                      ++++|.+ ........+.+|..|++++|+|..... ..+.++|.|+++.|.+||+.+
T Consensus       358 ~La~N~i-E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKI-ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhH-hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            6666655 222333335566666666666654322 355666666666666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=3.3e-12  Score=119.39  Aligned_cols=176  Identities=29%  Similarity=0.387  Sum_probs=85.4

Q ss_pred             CcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q 042271          303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLD  382 (517)
Q Consensus       303 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  382 (517)
                      -...+++.|.+. .+|..++.+..|+.+.++.|.+. .+|.... .+..|..++++.|.++                   
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-------------------  134 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-------------------  134 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-------------------
Confidence            344555666655 55556666666666666666554 4443332 2444555555555444                   


Q ss_pred             CcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271          383 GNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       383 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  462 (517)
                            ..+..+..|+ |+.|.+++|+++ .+|..++....|..|+.+.|.+. .+|..+.++.+|+.|++..|++.+..
T Consensus       135 ------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  135 ------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             ------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence                  3333333333 455555555544 44444444445555555555544 34444444555555555555443322


Q ss_pred             CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCcc
Q 042271          463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ  512 (517)
Q Consensus       463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~  512 (517)
                      +... .-.|..||+++|+++ .+|-.|.++..|++|-|.+||++ +.|.+
T Consensus       206 ~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq  252 (722)
T KOG0532|consen  206 EELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ  252 (722)
T ss_pred             HHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence            2221 334445555555544 33444555555555555555555 33433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=3.1e-10  Score=110.20  Aligned_cols=201  Identities=32%  Similarity=0.386  Sum_probs=132.5

Q ss_pred             EEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCC-CCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMK-MLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      .++...+.+. .-...... .+.++.+++.++.++ .++....... +|+.|++++|.+. .++. ....++.|+.|+++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhccccccccccC
Confidence            5677776653 12223323 467888888888887 4444555553 8888888888877 4432 23457788888888


Q ss_pred             CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271          359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI  438 (517)
Q Consensus       359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  438 (517)
                      +|++.+... .....+.|+.|++++|.+. ..+........|+++.+++|.+. ..+..+..+.++..+.+.++++.. .
T Consensus       172 ~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         172 FNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             Cchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence            888775332 2226778888888888877 34444445556888888888544 455567777777777777777763 3


Q ss_pred             cccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhc
Q 042271          439 PIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH  490 (517)
Q Consensus       439 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  490 (517)
                      +..+..+++++.|++++|+++.... .....+++.|+++++.+....+....
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence            5566677778888888887766544 44467788888887777665554333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=1.2e-10  Score=100.61  Aligned_cols=204  Identities=24%  Similarity=0.215  Sum_probs=97.9

Q ss_pred             cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhh
Q 042271          270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAAR  348 (517)
Q Consensus       270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~  348 (517)
                      ..+..+++|..+.++.|.-. .+...... -|.|+++.+....++.. + .+.-...+.....+.-. ..|.....+ .-
T Consensus       208 f~l~~f~~l~~~~~s~~~~~-~i~~~~~~-kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~-dT  282 (490)
T KOG1259|consen  208 FNLNAFRNLKTLKFSALSTE-NIVDIELL-KPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSA-DT  282 (490)
T ss_pred             cchHHhhhhheeeeeccchh-heeceeec-Cchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEec-ch
Confidence            34455667777777776543 22222222 46777777766654411 1 11111111111111000 001100000 01


Q ss_pred             cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271          349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII  428 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  428 (517)
                      .+.|+++++++|.++. +..+..-.|.++.|++++|.+..  .+.+..+++|+.|++++|.+. ..-.+=..+.++++|.
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            2345666666665542 22333345666666666666643  222556666666666666555 2333334455666666


Q ss_pred             CCCCcccccccccccCCCCccEEEccCCcccc--CCCCCCCcccccEEEccCCcCCcc
Q 042271          429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR--TLPSCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      +.+|.+..  ...+..+.+|..||+++|++..  ....+-.+|.|+.+.+.+|.+.+.
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            66666542  1344555666666666666522  122233366666666666666544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=9.5e-10  Score=106.80  Aligned_cols=202  Identities=35%  Similarity=0.475  Sum_probs=155.4

Q ss_pred             eEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccC-CCcEEEccCCcCCCCCchhhhcCCCCcEEeccc
Q 042271          256 RLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERVDISY  334 (517)
Q Consensus       256 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~  334 (517)
                      .+....+.+.... ......+.++.+++.++.++ .++..... .. +|+.|++++|.+. .++..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4666666552222 23344478999999999998 66666654 53 8999999999988 4556788999999999999


Q ss_pred             cccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc
Q 042271          335 NQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI  414 (517)
Q Consensus       335 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  414 (517)
                      |++. .++.... ..+.|+.|++++|.+.... ........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus       173 N~l~-~l~~~~~-~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         173 NDLS-DLPKLLS-NLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             chhh-hhhhhhh-hhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            9998 5655432 4779999999999987533 23335566999999999644 45667888889999999999887 44


Q ss_pred             chhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCc
Q 042271          415 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP  468 (517)
Q Consensus       415 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  468 (517)
                      +..+..++.+++|++++|.+.....  +....++++++++++.++...+.....
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence            6778889999999999999985444  788899999999999998877766653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.4e-09  Score=73.84  Aligned_cols=60  Identities=38%  Similarity=0.512  Sum_probs=50.1

Q ss_pred             CCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcC
Q 042271          446 NSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL  505 (517)
Q Consensus       446 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~  505 (517)
                      |+|++|++++|+++...+..+. +++|++|++++|.++.+.+.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5788888888888777766666 78888888888888888888899999999999998875

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.6e-09  Score=73.51  Aligned_cols=61  Identities=28%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             CcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCcc
Q 042271           32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL   92 (517)
Q Consensus        32 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   92 (517)
                      |+|++|++++|.+..++.+.|.++++|++|++++|.+....+++|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666666666666667777777777777776655566666777777777666643

...

>PLN03150 hypothetical protein; Provisional

Probab=98.88  E-value=4.5e-09  Score=106.82  Aligned_cols=111  Identities=30%  Similarity=0.497  Sum_probs=69.3

Q ss_pred             CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccC
Q 042271          400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSK  478 (517)
Q Consensus       400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~  478 (517)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..+..+. +++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666666666666666666666666666666666666665555444 56666666666


Q ss_pred             CcCCccchhhhcCC-CcccEEECCCCcCCCCCC
Q 042271          479 NKIEGRLESIIHDS-PHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       479 n~~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~  510 (517)
                      |.+++.+|..+... .++..+++.+|+..+.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            66666666555543 355666666666555443

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=4.8e-09  Score=106.63  Aligned_cols=107  Identities=29%  Similarity=0.483  Sum_probs=79.7

Q ss_pred             cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEecc
Q 042271           57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVS  136 (517)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~  136 (517)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36777788887777777777888888888888888777777777888888888888888877778778888888888888


Q ss_pred             CCccccccCCCcccC-CCCCceeecccCC
Q 042271          137 DNQLTQNISSSPLMH-LTSIEELILSNNH  164 (517)
Q Consensus       137 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  164 (517)
                      +|.+.+.+|. .+.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecCCc
Confidence            8877766665 3433 2355667777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=2.5e-10  Score=107.09  Aligned_cols=169  Identities=28%  Similarity=0.435  Sum_probs=107.1

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      ...+++.|++. ++|..+.. |..|+.+.+..|.+. .++.+++.+..|+.++|+.|.+. .+|..++. + -|+.|.++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeEEEe
Confidence            45566666665 66666655 556666666666665 56666666777777777777666 55555542 2 46666666


Q ss_pred             CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271          359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI  438 (517)
Q Consensus       359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  438 (517)
                      +|+++. ++..++..+.|..|+.+.|.+. ..+..+..+.+|+.|.+..|.+. .+|..+. .-.|.+||++.|++. .+
T Consensus       152 NNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence            666652 3344556666667777777665 45556666667777777766666 4444444 455666777777766 56


Q ss_pred             cccccCCCCccEEEccCCcc
Q 042271          439 PIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       439 ~~~~~~~~~L~~L~l~~n~l  458 (517)
                      |..|.++.+|++|.|.+|.+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             chhhhhhhhheeeeeccCCC
Confidence            66677777777777777766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=3.6e-10  Score=97.57  Aligned_cols=179  Identities=22%  Similarity=0.190  Sum_probs=117.2

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEI  354 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~  354 (517)
                      ..|+.+|++...++..--..+.+.|.+|+.|.+.++.+.+.+...+.+..+|+.|+++++. ++......+++.|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888888877633333455668899999999999998888889999999999999985 343334556778889999


Q ss_pred             EEccCCcccccc-ccccc-CCCCCcEEEccCcccc--cc-cchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEE
Q 042271          355 LALSNNSLQGHI-FSEKF-NLTNLMTLQLDGNKFT--GE-ILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDII  428 (517)
Q Consensus       355 L~l~~n~~~~~~-~~~~~-~~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  428 (517)
                      |+++.|...... ...+. --+.|+.|+++|+.-.  .. ......+||+|..||+++|. ++......|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999988765322 11222 2467888888886532  11 12223467888888888874 3333334455566666666


Q ss_pred             CCCCccccccccc---ccCCCCccEEEccCC
Q 042271          429 MPNNNLEGPIPIE---FCQLNSLKILDLSNN  456 (517)
Q Consensus       429 l~~~~~~~~~~~~---~~~~~~L~~L~l~~n  456 (517)
                      ++.|.-  +.|..   +...|+|.+|++-++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            666643  22322   344566666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.8e-10  Score=98.23  Aligned_cols=179  Identities=22%  Similarity=0.153  Sum_probs=85.1

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCc-ccccCChhhhhccCCCcEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNF-FRGHIPVEIGTYLPGLMDL  306 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L  306 (517)
                      .+++++++...++..-...+...|.+|+.|.+.+..+.+.+...+.+...|+.++++++. ++......+...|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355555555554433333334455666666666666655555555555666666666643 3322223334446666666


Q ss_pred             EccCCcCCCCCc-hhhh-cCCCCcEEecccccc--ccccchhHHhhcCCCcEEEccCC-cccccccccccCCCCCcEEEc
Q 042271          307 NLSRNAFNGSIP-SSFA-DMKMLERVDISYNQL--TGEIPERMAARCFSLEILALSNN-SLQGHIFSEKFNLTNLMTLQL  381 (517)
Q Consensus       307 ~l~~~~i~~~~~-~~~~-~l~~L~~L~l~~~~i--~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l  381 (517)
                      +++.|....... ..+. --++|+.|+++|+.-  .+.-.......||+|.+|++++| .++......+..++.|++|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            666665442211 1111 124555666666531  11111223334556666666554 233333334445555555555


Q ss_pred             cCcccccccchh---hhhcccCCeEEecCC
Q 042271          382 DGNKFTGEILES---LSKCYLLEGLYLSDN  408 (517)
Q Consensus       382 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~  408 (517)
                      +.|-.  +.|+.   +...|+|.+|++.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            55432  22222   233455555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.76  E-value=5.1e-10  Score=101.19  Aligned_cols=277  Identities=19%  Similarity=0.106  Sum_probs=150.1

Q ss_pred             CcCEeeccCCcCCC-CCChhhhhcccccceEeccCCccC-CCcc-cccccCCcccEEEccCC-cccccCChhhhhccCCC
Q 042271          228 DLKNADLSHLNLSG-KFPNWLVENNANLERLLLADNSLF-GSFW-MPIHSHQKLATLDVSNN-FFRGHIPVEIGTYLPGL  303 (517)
Q Consensus       228 ~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L  303 (517)
                      .|+.+.++++.-.+ .-...+..+++++++|.+.+|... +... ..-..|++++.+++..| .+++..-......+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            35555555553222 222233456677777766666532 2211 12345677777777774 34443344455667788


Q ss_pred             cEEEccCCc-CCCC-CchhhhcCCCCcEEeccccccc-cccchhHHhhcCCCcEEEccCCc-ccccc-cccccCCCCCcE
Q 042271          304 MDLNLSRNA-FNGS-IPSSFADMKMLERVDISYNQLT-GEIPERMAARCFSLEILALSNNS-LQGHI-FSEKFNLTNLMT  378 (517)
Q Consensus       304 ~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~  378 (517)
                      ++|+++.|. +++. +.....++..++++...||.-. .+....+..++.-+.++++..|. +++.. ...-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            888887774 3321 2234456666777766665321 11111222234445556655553 33322 222335677777


Q ss_pred             EEccCcc-cccccchh-hhhcccCCeEEecCCCC-CCccchh-hcCCCCCcEEECCCCcccc--cccccccCCCCccEEE
Q 042271          379 LQLDGNK-FTGEILES-LSKCYLLEGLYLSDNHL-TGEIPRW-LGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKILD  452 (517)
Q Consensus       379 L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~  452 (517)
                      +..+++. +++..... -.++++|+.+.+++|+. +...... -.+++.|+.+++.+|....  .+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            7777654 33222222 23567778887777753 2211112 2456777777777775521  1222234677888888


Q ss_pred             ccCCcc-ccCCCCCCC-----cccccEEEccCCcC-CccchhhhcCCCcccEEECCCCc
Q 042271          453 LSNNSI-FRTLPSCFS-----PASIEQLHLSKNKI-EGRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       453 l~~n~l-~~~~~~~~~-----~~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      +++|.. +++....+.     ...|+.+.+++|.. +....+-+..|++|+.+++-+++
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            887753 333212221     56778888888874 34455677777888888777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.71  E-value=7.4e-10  Score=100.16  Aligned_cols=297  Identities=19%  Similarity=0.181  Sum_probs=178.6

Q ss_pred             eeeEeeccccccCC--CccccccccCCcCEeeccCCc-CCCCCChhhhhcccccceEeccCCc-cCCCccc-ccccCCcc
Q 042271          204 QLTFISLSGYIDGG--TFPKFLYHQHDLKNADLSHLN-LSGKFPNWLVENNANLERLLLADNS-LFGSFWM-PIHSHQKL  278 (517)
Q Consensus       204 ~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L  278 (517)
                      .|+.+.+.++.-.+  ........++++++|.+.+|. +++.....+...+++++.+++..|. +++.... -...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            56677777664322  223344567888888888874 4444445556677888888887754 3433333 34568888


Q ss_pred             cEEEccCCc-ccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcE
Q 042271          279 ATLDVSNNF-FRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEI  354 (517)
Q Consensus       279 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~  354 (517)
                      +.++++.|. +.+........++..++.+..+||.-.+.  +...=..++.+.++++.+|. ++++-...+..++.+|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            888888875 44444445555566777777777642211  11111345556677766664 343333445556778888


Q ss_pred             EEccCCc-cccccccccc-CCCCCcEEEccCcc-cccccchhhh-hcccCCeEEecCCCCCC--ccchhhcCCCCCcEEE
Q 042271          355 LALSNNS-LQGHIFSEKF-NLTNLMTLQLDGNK-FTGEILESLS-KCYLLEGLYLSDNHLTG--EIPRWLGNLSALEDII  428 (517)
Q Consensus       355 L~l~~n~-~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~  428 (517)
                      ++.+++. +++....++. ++++|+.+.+.+|+ +++.....+. +++.|+.+++.++....  .+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            8888753 4443333333 67888888888876 3433334443 56788888888885432  2344456688888888


Q ss_pred             CCCCcccccc-----cccccCCCCccEEEccCCccccCCC-CCC-CcccccEEEccCCc-CCccchh-hhcCCCcccEEE
Q 042271          429 MPNNNLEGPI-----PIEFCQLNSLKILDLSNNSIFRTLP-SCF-SPASIEQLHLSKNK-IEGRLES-IIHDSPHLVTLD  499 (517)
Q Consensus       429 l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~-~~~~~~~-~l~~~~~L~~l~  499 (517)
                      ++.|......     ...-.+...|..+.+++++.+.... ... .+++||.+++.+|+ ++..... .-.++|+++...
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            8877653211     2223456778888888887533222 122 27888888888886 3333333 344567776654


Q ss_pred             C
Q 042271          500 L  500 (517)
Q Consensus       500 l  500 (517)
                      +
T Consensus       459 ~  459 (483)
T KOG4341|consen  459 Y  459 (483)
T ss_pred             h
Confidence            3

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2.5e-09  Score=103.84  Aligned_cols=245  Identities=26%  Similarity=0.307  Sum_probs=153.5

Q ss_pred             ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEE
Q 042271          251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV  330 (517)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  330 (517)
                      +..++.+.+..+.+.. ....+..+.+|..+++.+|.+. .+...... +++|++|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhh-hhcchheeccccccccc--cchhhccchhhh
Confidence            3455555555555433 1233566778888888888876 33332323 77888888888888744  345666778888


Q ss_pred             eccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCC
Q 042271          331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNH  409 (517)
Q Consensus       331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  409 (517)
                      ++++|.+. .+..  +..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+..  .+.+..+..+..+++.+|.
T Consensus       146 ~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence            88888877 3332  2226788888888887765433 1 3567888888888888753  3334444455555777777


Q ss_pred             CCCccchhhcCCCC--CcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc---
Q 042271          410 LTGEIPRWLGNLSA--LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR---  484 (517)
Q Consensus       410 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~---  484 (517)
                      +...-  .+.....  |+.+++.++++.. .+..+..+..+..+++.+|++.. .........+..+....+.+...   
T Consensus       220 i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  220 ISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN-LEGLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             ceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc-cccccccchHHHhccCcchhcchhhh
Confidence            65321  1222233  7888888888873 33556677788888888887733 22223356666666777765422   


Q ss_pred             chh-hhcCCCcccEEECCCCcCCCCCC
Q 042271          485 LES-IIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       485 ~~~-~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ... .....+.++.+.+.+|++....+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hccccccccccccccccccCccccccc
Confidence            111 24556788888888888765444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=4.4e-09  Score=102.20  Aligned_cols=219  Identities=26%  Similarity=0.228  Sum_probs=144.8

Q ss_pred             ccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCC
Q 042271          273 HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL  352 (517)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L  352 (517)
                      ..+..++.+.+..+.+. .+-.... .++++..+++.+|.+... ...+..+++|++|++++|.|.+..+.   ..++.|
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL---STLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch---hhccch
Confidence            34556667777777665 2222222 377889999999988733 22267788899999999988744332   235568


Q ss_pred             cEEEccCCcccccccccccCCCCCcEEEccCcccccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      +.|++++|.+.+..  .+..++.|+.+++++|.+..... . ...+.+++.+++.+|.+...  ..+..+..+..+++..
T Consensus       143 ~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  143 KELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD  217 (414)
T ss_pred             hhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence            88999998887532  34458888888999888875333 2 57788888888988887632  2344445555557777


Q ss_pred             CcccccccccccCCC--CccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          432 NNLEGPIPIEFCQLN--SLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      |.+....+  +..+.  +|+.+++++|++......+-....++.|++.+|.+...  ..+...+.+..+..++|++.
T Consensus       218 n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  218 NKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            87764322  22233  38889999988855433333367888888888877643  23455566777777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=3.7e-09  Score=102.30  Aligned_cols=195  Identities=25%  Similarity=0.203  Sum_probs=102.7

Q ss_pred             CcccEEEccCCcccccC-ChhhhhccCCCcEEEccCCcCCCCCchhhhcC-CCCcEEeccccccccccchhHHh------
Q 042271          276 QKLATLDVSNNFFRGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM-KMLERVDISYNQLTGEIPERMAA------  347 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~------  347 (517)
                      ++++.+.+-...-.+.. |..++. +.+|+.|.+.+|.+.. . ..+..+ ..|++|.-.+. .. .+ ..++.      
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~S-l~-Al-~~v~ascggd~  157 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNS-LD-AL-RHVFASCGGDI  157 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhcc-HH-HH-HHHHHHhcccc
Confidence            44445544443322222 555555 7788888888887762 1 111111 22334332211 00 00 00010      


Q ss_pred             --h--cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCC
Q 042271          348 --R--CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSA  423 (517)
Q Consensus       348 --~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  423 (517)
                        .  .-.|...++++|.+. .+..++.-++.++.|+|+.|++++  .+.+..|+.|++|||+.|.+.....-...+|. 
T Consensus       158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-  233 (1096)
T ss_pred             ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhh-
Confidence              0  114556666666654 222344456777777777777754  33566777777777777776632222223333 


Q ss_pred             CcEEECCCCcccccccccccCCCCccEEEccCCccccCC--CCCCCcccccEEEccCCcCC
Q 042271          424 LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL--PSCFSPASIEQLHLSKNKIE  482 (517)
Q Consensus       424 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~  482 (517)
                      |..|.+++|.+..  ...+.++.+|+.||+++|-+.+..  ...+.+..|++|++.+|.+.
T Consensus       234 L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777776652  134556677777777777654432  22233567777777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=9.1e-09  Score=99.64  Aligned_cols=182  Identities=30%  Similarity=0.361  Sum_probs=127.1

Q ss_pred             cccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCc--c-------CCCcccccccCCcccEEEccCCcccc
Q 042271          220 PKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNS--L-------FGSFWMPIHSHQKLATLDVSNNFFRG  290 (517)
Q Consensus       220 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~-------~~~~~~~~~~~~~L~~L~l~~~~~~~  290 (517)
                      |-.+.....|+.|.++++++.....  +..--..|++|...+.-  +       .+.+..+ ....+|.+.++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~G--L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKG--LQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhh--hHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH-
Confidence            5566777888888888888764111  11112345555443221  0       0111011 11246888888888875 


Q ss_pred             cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc
Q 042271          291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK  370 (517)
Q Consensus       291 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  370 (517)
                      .....+ ..++.++.|+|++|.+++.  ..+..|+.|++||++.|.+. .+|.....+|+ |..|.+.+|.++.  ...+
T Consensus       178 ~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gi  250 (1096)
T KOG1859|consen  178 LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGI  250 (1096)
T ss_pred             hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhH
Confidence            333333 3488999999999999844  48899999999999999988 77765555675 9999999998875  3467


Q ss_pred             cCCCCCcEEEccCcccccc-cchhhhhcccCCeEEecCCCCCC
Q 042271          371 FNLTNLMTLQLDGNKFTGE-ILESLSKCYLLEGLYLSDNHLTG  412 (517)
Q Consensus       371 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~  412 (517)
                      .++.+|+.||+++|-+.+. ..+.+..+..|+.|.+.||++-.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            7899999999999987542 34557778899999999998863

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=1.8e-07  Score=80.09  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             hcCCCcEEEccCCccccccc----ccccCCCCCcEEEccCcccccccchhh-------------hhcccCCeEEecCCCC
Q 042271          348 RCFSLEILALSNNSLQGHIF----SEKFNLTNLMTLQLDGNKFTGEILESL-------------SKCYLLEGLYLSDNHL  410 (517)
Q Consensus       348 ~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~  410 (517)
                      +||.|+..+++.|.+....+    ..++.-..|..|.+++|.+..+.-.-+             ..-|.|+++....|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            45666666666665543222    223355666777777666542211111             1235566666666655


Q ss_pred             CCc----cchhhcCCCCCcEEECCCCccccc-----ccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEc
Q 042271          411 TGE----IPRWLGNLSALEDIIMPNNNLEGP-----IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHL  476 (517)
Q Consensus       411 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l  476 (517)
                      ...    ....++.-..|+.+.+..|.+.-.     .-..+..+.+|+.|++..|-++.....+.+     -+.|++|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            421    112233334566666666655321     111234456666666666665554433322     134566666


Q ss_pred             cCCcCCccch----hhhcC--CCcccEEECCCCcCC
Q 042271          477 SKNKIEGRLE----SIIHD--SPHLVTLDLSCNSLH  506 (517)
Q Consensus       477 ~~n~~~~~~~----~~l~~--~~~L~~l~l~~n~~~  506 (517)
                      .+|-++....    ..|..  .|+|..|-..+|-.-
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6665543321    11211  255666666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.36  E-value=1e-07  Score=96.73  Aligned_cols=154  Identities=22%  Similarity=0.284  Sum_probs=108.3

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCc-chhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-LDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ   83 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   83 (517)
                      .+|++|+++|.. .+...++......+|.|++|.+++.....- .......+++|+.||++++.+++.  ..+.++++||
T Consensus       122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            478999999975 567777777677999999999985444322 122456899999999999999844  7788999999


Q ss_pred             EEEccCCccCC-CCCcchhccccCcEEEccccccCCcc--c----ccccCCCCCcEEeccCCccccccCCCcccCCCCCc
Q 042271           84 VLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSL--P----LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE  156 (517)
Q Consensus        84 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--~----~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~  156 (517)
                      .|.+++-.+.. .....+.++++|++||+|........  .    +.-..+|+|+.||.+++.+.+.+....+..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            99998766652 12235678999999999987654221  1    12235889999999988876544332333445555


Q ss_pred             eeecc
Q 042271          157 ELILS  161 (517)
Q Consensus       157 ~L~l~  161 (517)
                      .+.+-
T Consensus       279 ~i~~~  283 (699)
T KOG3665|consen  279 QIAAL  283 (699)
T ss_pred             hhhhh
Confidence            55443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=1.7e-07  Score=80.29  Aligned_cols=88  Identities=20%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             ccccceEeccCCccCCCcccc----cccCCcccEEEccCCccc---ccCChhh------hhccCCCcEEEccCCcCCCCC
Q 042271          251 NANLERLLLADNSLFGSFWMP----IHSHQKLATLDVSNNFFR---GHIPVEI------GTYLPGLMDLNLSRNAFNGSI  317 (517)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~~i~~~~  317 (517)
                      +..++++++++|.+.......    +..-.+|+..+++.-...   ++++...      ...||.|+.+++++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567777888888775443332    333456666666653221   1222111      112666777777777665444


Q ss_pred             chh----hhcCCCCcEEeccccccc
Q 042271          318 PSS----FADMKMLERVDISYNQLT  338 (517)
Q Consensus       318 ~~~----~~~l~~L~~L~l~~~~i~  338 (517)
                      +..    ++.-..|++|.+.+|.+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC
Confidence            433    234456666666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=5e-07  Score=78.54  Aligned_cols=208  Identities=20%  Similarity=0.154  Sum_probs=131.6

Q ss_pred             CCCcEEEccCCcCCCCC-chhh-hcCCCCcEEeccccccccccc--hhHHhhcCCCcEEEccCCcccccccccccCCCCC
Q 042271          301 PGLMDLNLSRNAFNGSI-PSSF-ADMKMLERVDISYNQLTGEIP--ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL  376 (517)
Q Consensus       301 ~~L~~L~l~~~~i~~~~-~~~~-~~l~~L~~L~l~~~~i~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  376 (517)
                      ..++.+.+.++.+.... ...| ..++.++++|+.+|.|. .+.  ..+...+|.|+.|+++.|.+...+...-....+|
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            35556777777776331 1222 35677888999999887 333  2345578899999999988764332222345688


Q ss_pred             cEEEccCccccccc-chhhhhcccCCeEEecCCCCCC--ccchhhcCC-CCCcEEECCCCcccccc--cccccCCCCccE
Q 042271          377 MTLQLDGNKFTGEI-LESLSKCYLLEGLYLSDNHLTG--EIPRWLGNL-SALEDIIMPNNNLEGPI--PIEFCQLNSLKI  450 (517)
Q Consensus       377 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~  450 (517)
                      ++|-+.|..+.... ...+..+|.++++++++|....  ....+.+.. +.++++....|....-.  ..--..+|++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            88888887765322 2345567888888888883321  111222222 35666666666543110  111123578888


Q ss_pred             EEccCCccccCCCCCCC--cccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCC
Q 042271          451 LDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       451 L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~  509 (517)
                      +.+..|++.........  .+.+--|+++.+++.+.. .+.+.+.+.|+.|.++.+|+...+
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            88888887555443332  677778888888887653 367888899999999999987543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.3e-07  Score=79.62  Aligned_cols=232  Identities=17%  Similarity=0.156  Sum_probs=131.8

Q ss_pred             hhccccCcEEEccccccCCccc-ccc-cCCCCCcEEeccCCcccc--ccCCCcccCCCCCceeecccCCCCCCCCCcccc
Q 042271          100 LCELVLMRELHIDNNDLRGSLP-LCL-ANLTSLRVLDVSDNQLTQ--NISSSPLMHLTSIEELILSNNHFFQSPISLEPL  175 (517)
Q Consensus       100 l~~l~~L~~L~L~~~~~~~~~~-~~~-~~l~~L~~L~L~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  175 (517)
                      +....-++.+.+.++.|..+-. ..| ..++.++.+||.+|.+.+  .+.. .++++|.|+.|+++.|+... ++.    
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s-~I~----  114 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSS-DIK----  114 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCC-ccc----
Confidence            3333455566666666542211 112 256789999999998865  2222 46789999999999887411 110    


Q ss_pred             cCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccc
Q 042271          176 FNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLE  255 (517)
Q Consensus       176 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  255 (517)
                       .++                    .+..+|+.+.+.+.                        .+.-.-...+...+|.++
T Consensus       115 -~lp--------------------~p~~nl~~lVLNgT------------------------~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen  115 -SLP--------------------LPLKNLRVLVLNGT------------------------GLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             -cCc--------------------ccccceEEEEEcCC------------------------CCChhhhhhhhhcchhhh
Confidence             000                    12235555555543                        333223333345566666


Q ss_pred             eEeccCCccCCCcc---cccccCCcccEEEccCCccccc-CChhhhhccCCCcEEEccCCcCCCC-CchhhhcCCCCcEE
Q 042271          256 RLLLADNSLFGSFW---MPIHSHQKLATLDVSNNFFRGH-IPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERV  330 (517)
Q Consensus       256 ~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L  330 (517)
                      +|.++.|.+.....   .+-..-+.++++++.+|...-. -.......+|++..+.+..|.+... .......++.+-.|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            66666663311100   0011224566777776643210 0112334478888888888877632 33445566777788


Q ss_pred             eccccccccccchhHHhhcCCCcEEEccCCccccccc------ccccCCCCCcEEEcc
Q 042271          331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF------SEKFNLTNLMTLQLD  382 (517)
Q Consensus       331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~l~  382 (517)
                      .++.++|.+-.......++++|..|.+.++++.+...      --++++++++.|+=+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            8888887743334556678889999998887764222      135577888887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=1.9e-06  Score=70.71  Aligned_cols=104  Identities=21%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCc-ccccccCCCCCcEEec
Q 042271           57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS-LPLCLANLTSLRVLDV  135 (517)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L  135 (517)
                      ....+||++|.+.  ....|..++.|.+|.+..|.|+..-|.--..+++|..|.+++|.+... ...-+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4455555555544  123344555555555555555533332223345555555555554311 0112445556666666


Q ss_pred             cCCcccc--ccCCCcccCCCCCceeeccc
Q 042271          136 SDNQLTQ--NISSSPLMHLTSIEELILSN  162 (517)
Q Consensus       136 ~~~~~~~--~~~~~~l~~l~~L~~L~l~~  162 (517)
                      -+|.+.+  ..-...+..+|+|+.||+..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            6655533  11122345566666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.13  E-value=9.1e-06  Score=65.01  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=56.6

Q ss_pred             ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271          368 SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS  447 (517)
Q Consensus       368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  447 (517)
                      .+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455566666666653 333345556666666777777664 4434445566666677777755 333234456666777


Q ss_pred             ccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCccc
Q 042271          448 LKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLV  496 (517)
Q Consensus       448 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  496 (517)
                      |+.+++..+ +.......+....|+.+.+.. .+..+....|.+|++|+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccCcc-ccEEchhhhcCCCceEEEECC-CccEECCccccccccCC
Confidence            777777654 444455555544777777765 44556667788887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.11  E-value=5.9e-07  Score=90.17  Aligned_cols=62  Identities=32%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             cCCCcEEEccCCc-CCCCCchhhhc-CCCCcEEeccccc-cccccchhHHhhcCCCcEEEccCCc
Q 042271          300 LPGLMDLNLSRNA-FNGSIPSSFAD-MKMLERVDISYNQ-LTGEIPERMAARCFSLEILALSNNS  361 (517)
Q Consensus       300 ~~~L~~L~l~~~~-i~~~~~~~~~~-l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~n~  361 (517)
                      +++|+.++++++. +++.....+.. |++|++|.+.+|. +++..-..+...++.|+.|++++|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555555554 44333333322 5555555555554 3444444444455555555555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=5e-07  Score=69.14  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             cCCeEEecCCCCCCccchhh-cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEcc
Q 042271          399 LLEGLYLSDNHLTGEIPRWL-GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS  477 (517)
Q Consensus       399 ~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  477 (517)
                      .|+.+++++|.+++ .|..| ..++.++.+++.+|.++ .+|..+..++.|+.|+++.|++.......+.+.++-.|+..
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            34444555555542 22222 22334555555555554 23444555555555555555553333333324444444444


Q ss_pred             CCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271          478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                      +|....+.-+.| .-..+-..++.++++.+..|...
T Consensus       132 ~na~~eid~dl~-~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  132 ENARAEIDVDLF-YSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             CCccccCcHHHh-ccccHHHHHhcCCcccccCcccc
Confidence            444432222211 11222223345555555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.03  E-value=1.4e-05  Score=63.98  Aligned_cols=122  Identities=20%  Similarity=0.257  Sum_probs=40.1

Q ss_pred             hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhccc
Q 042271          320 SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL  399 (517)
Q Consensus       320 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  399 (517)
                      +|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +......+|.++++++.+.+.. .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344444455554442 222 344444444444555554442 3333333444444455555543 222223334444555


Q ss_pred             CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCc
Q 042271          400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL  448 (517)
Q Consensus       400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  448 (517)
                      ++.+.+..+ +.......|.++ +++.+.+.+ .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 322333344444 555555543 2222333445554444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=6.7e-06  Score=50.73  Aligned_cols=37  Identities=35%  Similarity=0.505  Sum_probs=29.4

Q ss_pred             ccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          469 ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       469 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      ++|++|++++|.++... ..+.++++|++|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence            46889999999998554 45889999999999999988

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=8.3e-06  Score=67.09  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc-cccccCCCCccEE
Q 042271          373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI-PIEFCQLNSLKIL  451 (517)
Q Consensus       373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  451 (517)
                      ..+...+++++|.+..  ...|..+++|.+|.+++|.|+...|..-..+++|..|.+.+|.+.... -..+..||+|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4456667777777642  445666777777777777777555555555666777777777665321 2345567777777


Q ss_pred             EccCCccccCCCCCC----CcccccEEEccCC
Q 042271          452 DLSNNSIFRTLPSCF----SPASIEQLHLSKN  479 (517)
Q Consensus       452 ~l~~n~l~~~~~~~~----~~~~L~~L~l~~n  479 (517)
                      .+-+|+.++..-.-.    ..++|+.||..+-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            777776644322211    1566777666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=5.5e-07  Score=68.93  Aligned_cols=108  Identities=21%  Similarity=0.294  Sum_probs=79.5

Q ss_pred             cceEEeccccccCCcchh--hhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271           33 SLKFLSLINSSKNTILDQ--GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH  110 (517)
Q Consensus        33 ~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  110 (517)
                      .+-.++|+++.+..++..  .+.+..+|...++++|.+....+..-.+.+.++.+++..|.+. .+|+.++.++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            455677777777766541  2345567777888888888444444456678888888888888 6788888888888888


Q ss_pred             ccccccCCcccccccCCCCCcEEeccCCcccc
Q 042271          111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ  142 (517)
Q Consensus       111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  142 (517)
                      ++.|.+. ..|..+..+.+|-.|+..++....
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence            8888887 677777778888888888777643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=5.3e-06  Score=84.45  Aligned_cols=61  Identities=18%  Similarity=0.257  Sum_probs=26.7

Q ss_pred             CCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccc
Q 042271          275 HQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL  337 (517)
Q Consensus       275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i  337 (517)
                      +|.|++|.+.+-.+...-....+..+|+|..||+++++++..  ..++.+++|+.|.+.+-.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~  207 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEF  207 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCC
Confidence            455555555543332111122233355555555555555422  3444555555554444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.93  E-value=7.2e-05  Score=70.18  Aligned_cols=138  Identities=17%  Similarity=0.185  Sum_probs=87.2

Q ss_pred             hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc-ccccccchhhhhcc
Q 042271          320 SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN-KFTGEILESLSKCY  398 (517)
Q Consensus       320 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~  398 (517)
                      .+..+.+++.|++++|.+. .+|.    -.++|+.|.+++|.-....+..+  .++|+.|++++| .+. ..|      +
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~  112 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------E  112 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------c
Confidence            4556789999999999877 6662    24479999998865433333333  468999999988 443 222      4


Q ss_pred             cCCeEEecCCCCCCccchhhcCC-CCCcEEECCCCcccc--cccccccCCCCccEEEccCCccccCCCCCCCcccccEEE
Q 042271          399 LLEGLYLSDNHLTGEIPRWLGNL-SALEDIIMPNNNLEG--PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLH  475 (517)
Q Consensus       399 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  475 (517)
                      +|+.|++.++....     +..+ ++|+.|.+.++....  ..+..  -.++|++|++++|.... .+..+ +.+|+.|+
T Consensus       113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~L-P~SLk~L~  183 (426)
T PRK15386        113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKL-PESLQSIT  183 (426)
T ss_pred             ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccccc-cccCcEEE
Confidence            68888887665431     1222 467788875543211  11111  12589999999887643 23222 57999999


Q ss_pred             ccCCc
Q 042271          476 LSKNK  480 (517)
Q Consensus       476 l~~n~  480 (517)
                      ++.+.
T Consensus       184 ls~n~  188 (426)
T PRK15386        184 LHIEQ  188 (426)
T ss_pred             ecccc
Confidence            87763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.8e-05  Score=48.87  Aligned_cols=36  Identities=36%  Similarity=0.630  Sum_probs=19.1

Q ss_pred             cCcEEEccccccCCcccccccCCCCCcEEeccCCccc
Q 042271          105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT  141 (517)
Q Consensus       105 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  141 (517)
                      +|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666655 34444556666666666665554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.84  E-value=6.6e-05  Score=70.45  Aligned_cols=13  Identities=23%  Similarity=0.348  Sum_probs=6.2

Q ss_pred             cccceEeccCCcc
Q 042271          252 ANLERLLLADNSL  264 (517)
Q Consensus       252 ~~L~~L~l~~~~~  264 (517)
                      .+++.|++++|.+
T Consensus        52 ~~l~~L~Is~c~L   64 (426)
T PRK15386         52 RASGRLYIKDCDI   64 (426)
T ss_pred             cCCCEEEeCCCCC
Confidence            4445555554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=1.3e-06  Score=75.35  Aligned_cols=101  Identities=23%  Similarity=0.297  Sum_probs=75.6

Q ss_pred             CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCcc-ccccCCCC
Q 042271            3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTS   81 (517)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~   81 (517)
                      ++.+++-|+..||  ++.+...   ..+++.|++|.|+-|.|.++.+  +..|.+|+.|.|..|.+.+... ..+.++++
T Consensus        17 dl~~vkKLNcwg~--~L~DIsi---c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGC--GLDDISI---CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCC--CccHHHH---HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            4567778888888  5555433   6788999999999888888875  8889999999999988874322 45678888


Q ss_pred             CcEEEccCCccCCCCCc-----chhccccCcEEE
Q 042271           82 LQVLYASSNELTGNISP-----GLCELVLMRELH  110 (517)
Q Consensus        82 L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~  110 (517)
                      |+.|+|..|...+..+.     .+.-+|+|++||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888888877655443     345677787774

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.71  E-value=8.8e-06  Score=81.66  Aligned_cols=175  Identities=23%  Similarity=0.144  Sum_probs=102.3

Q ss_pred             ccCCcCEeeccCCc-CCCCCChhhhhcccccceEeccCC-ccCCC----cccccccCCcccEEEccCCc-ccccCChhhh
Q 042271          225 HQHDLKNADLSHLN-LSGKFPNWLVENNANLERLLLADN-SLFGS----FWMPIHSHQKLATLDVSNNF-FRGHIPVEIG  297 (517)
Q Consensus       225 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  297 (517)
                      .++.++.+.+.++. +.......+...++.|+.|+++++ .....    .......+++|+.++++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35677777777763 332222334567788888888763 21111    11234456788888888887 6655555666


Q ss_pred             hccCCCcEEEccCCc-CCCC-CchhhhcCCCCcEEeccccccc-cccchhHHhhcCCCcEEEccCCcccccccccccCCC
Q 042271          298 TYLPGLMDLNLSRNA-FNGS-IPSSFADMKMLERVDISYNQLT-GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT  374 (517)
Q Consensus       298 ~~~~~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  374 (517)
                      ..+++|+.|.+.+|. +++. +......+++|++|++++|... +..-.....++++++.+.+....-          ++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence            668899999988887 5543 2334467888999999988653 222233345577777765544321          34


Q ss_pred             CCcEEEccCcccc---cccchhhhhcccCCeEEecCCC
Q 042271          375 NLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNH  409 (517)
Q Consensus       375 ~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~  409 (517)
                      .++.+.+.++...   .........++.++.+.+..+.
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            4444444433321   1222334456666666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=4.7e-05  Score=65.62  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=38.2

Q ss_pred             cccCcEEEecCCcccCCccccccCCCCCcEEEccCC--ccCCCCCcchhccccCcEEEccccccCCccccc---ccCCCC
Q 042271           55 LVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN--ELTGNISPGLCELVLMRELHIDNNDLRGSLPLC---LANLTS  129 (517)
Q Consensus        55 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~l~~  129 (517)
                      +..|+.|++.+..++  .-..+..+++|++|.++.|  .+.+.++.....+|+|+++++++|++..  +..   +..+++
T Consensus        42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            344444444444433  1122344555566666555  3433333333344566666666665541  222   234445


Q ss_pred             CcEEeccCCcc
Q 042271          130 LRVLDVSDNQL  140 (517)
Q Consensus       130 L~~L~L~~~~~  140 (517)
                      |.+|++..|..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            55555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=9e-05  Score=63.92  Aligned_cols=108  Identities=25%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCC--cccCCccccccCCCCCcEEEccCCccCC-CCCcchhccc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGY--DLRGSLPWCLANMTSLQVLYASSNELTG-NISPGLCELV  104 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~  104 (517)
                      ...+..|+.|++.+....++..  |-.+++|+.|.++.|  ++...++--..++++|+++++++|++.. .....+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            4566677888877666666553  667899999999999  6666666666778999999999998872 1223467888


Q ss_pred             cCcEEEccccccCCccc---ccccCCCCCcEEeccC
Q 042271          105 LMRELHIDNNDLRGSLP---LCLANLTSLRVLDVSD  137 (517)
Q Consensus       105 ~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~L~~  137 (517)
                      +|..|++.+|..+....   ..|.-+++|+.|+-.+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            99999999998763111   2355567777775443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=4.3e-05  Score=66.21  Aligned_cols=100  Identities=20%  Similarity=0.123  Sum_probs=60.1

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      .+.++|++++|.+.+   ..+...++.|+.|.|+-|.|+..  ..+..|++|++|.|..|.|.+.-.-.+..++|+|+.|
T Consensus        19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            355666666666652   22333467777777777777633  3566777777777777777643334555667777777


Q ss_pred             EccCCcccccccc-----cccCCCCCcEEE
Q 042271          356 ALSNNSLQGHIFS-----EKFNLTNLMTLQ  380 (517)
Q Consensus       356 ~l~~n~~~~~~~~-----~~~~~~~L~~L~  380 (517)
                      ++..|...+....     .+..+|+|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777765432211     233466666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.12  E-value=0.00017  Score=36.89  Aligned_cols=22  Identities=50%  Similarity=0.656  Sum_probs=16.4

Q ss_pred             cccEEECCCCcCCCCCCccccCC
Q 042271          494 HLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       494 ~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      +|++||+++|+|+ .+|++|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4778888888888 777777765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.22  E-value=3.3e-05  Score=75.30  Aligned_cols=84  Identities=23%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             CcEEEccCCcCCCC----CchhhhcCCCCcEEeccccccccccchhHHhhc----CCCcEEEccCCcccccc----cccc
Q 042271          303 LMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIPERMAARC----FSLEILALSNNSLQGHI----FSEK  370 (517)
Q Consensus       303 L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~n~~~~~~----~~~~  370 (517)
                      +..+.+.+|.+.+.    +...+..++.|+.|++++|.+.+.........+    ..++.|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55566666665533    233455667777777777777643322222211    23455555556555322    2233


Q ss_pred             cCCCCCcEEEccCccc
Q 042271          371 FNLTNLMTLQLDGNKF  386 (517)
Q Consensus       371 ~~~~~L~~L~l~~~~~  386 (517)
                      ...+.++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3456666666666655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.0014  Score=54.35  Aligned_cols=82  Identities=18%  Similarity=0.091  Sum_probs=46.8

Q ss_pred             CCcEEECCCCcccccccccccCCCCccEEEccCCc-cccCCCCCCC--cccccEEEccCCc-CCccchhhhcCCCcccEE
Q 042271          423 ALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCFS--PASIEQLHLSKNK-IEGRLESIIHDSPHLVTL  498 (517)
Q Consensus       423 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~--~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l  498 (517)
                      .++.++.+++.+...-...+..+++++.|.+.+|. +.++....+.  .++||.|+|++|. ||......+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45556666666655444555556666666666653 2121111111  5677777777664 666666667777777777


Q ss_pred             ECCCCc
Q 042271          499 DLSCNS  504 (517)
Q Consensus       499 ~l~~n~  504 (517)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.19  E-value=0.0095  Score=30.31  Aligned_cols=18  Identities=28%  Similarity=0.575  Sum_probs=8.3

Q ss_pred             CcEEEccccccCCcccccc
Q 042271          106 MRELHIDNNDLRGSLPLCL  124 (517)
Q Consensus       106 L~~L~L~~~~~~~~~~~~~  124 (517)
                      |++|++++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.79  E-value=0.017  Score=27.20  Aligned_cols=14  Identities=64%  Similarity=0.802  Sum_probs=6.7

Q ss_pred             CcccEEECCCCcCC
Q 042271          493 PHLVTLDLSCNSLH  506 (517)
Q Consensus       493 ~~L~~l~l~~n~~~  506 (517)
                      ++|++|++++|.++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666655

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.67  E-value=0.009  Score=49.78  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=42.6

Q ss_pred             cceEeccCCccCCCcccccccCCcccEEEccCCcc-cccCChhhhhccCCCcEEEccCC-cCCCCCchhhhcCCCCcEEe
Q 042271          254 LERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFF-RGHIPVEIGTYLPGLMDLNLSRN-AFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       254 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~  331 (517)
                      ++.++-+++.+..+....+..++.++.|.+.+|.- .+..-..++...++|+.|++++| .|++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44455555554444444455555566666655532 11111222233566777777766 45544455566666666666


Q ss_pred             cccc
Q 042271          332 ISYN  335 (517)
Q Consensus       332 l~~~  335 (517)
                      +.+-
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            6554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.14  E-value=0.0023  Score=62.66  Aligned_cols=187  Identities=24%  Similarity=0.182  Sum_probs=111.4

Q ss_pred             cccCCcccEEEccCCcccccCChhhhhcc----CCCcEEEccCCcCCCC----CchhhhcCCCCcEEecccccccccc--
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYL----PGLMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEI--  341 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~--  341 (517)
                      +...+.|..|++++|.+.+.....+...+    ..+++|++..|.+++.    +...+.....++.++++.|.+....  
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            33445566666666655433222222211    3456677777776643    3344555677778888887764211  


Q ss_pred             --chhH---HhhcCCCcEEEccCCcccc----cccccccCCCC-CcEEEccCcccccccch----hhhhc-ccCCeEEec
Q 042271          342 --PERM---AARCFSLEILALSNNSLQG----HIFSEKFNLTN-LMTLQLDGNKFTGEILE----SLSKC-YLLEGLYLS  406 (517)
Q Consensus       342 --~~~~---~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~  406 (517)
                        +...   +....+++.|.+.+|.++.    .....+...+. +..+++..|.+.+....    .+..+ ..+++++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence              1111   1134568888888887763    12233445555 77799999988754332    23334 567899999


Q ss_pred             CCCCCC----ccchhhcCCCCCcEEECCCCcccccc----cccccCCCCccEEEccCCcc
Q 042271          407 DNHLTG----EIPRWLGNLSALEDIIMPNNNLEGPI----PIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       407 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l  458 (517)
                      .|.+..    .....+..++.++.+.++.|.+....    .........+.++-+.++..
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK  330 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence            998875    34556677889999999999886432    22334455666677765544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.80  E-value=0.011  Score=30.89  Aligned_cols=16  Identities=38%  Similarity=0.598  Sum_probs=6.6

Q ss_pred             ccccEEEccCCcCCcc
Q 042271          469 ASIEQLHLSKNKIEGR  484 (517)
Q Consensus       469 ~~L~~L~l~~n~~~~~  484 (517)
                      ++|++|+|++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3445555555554433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.76  E-value=0.0061  Score=51.83  Aligned_cols=92  Identities=12%  Similarity=0.055  Sum_probs=55.7

Q ss_pred             CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccccccc
Q 042271           46 TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLA  125 (517)
Q Consensus        46 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  125 (517)
                      .++-..+..++..++||++.|++. -+...|..++.|..|+++.+.+. ..|..++....++.+++..|+.+ ..|.++.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            333334445566666666666655 34444555556666666666665 55666666666666666666655 5666666


Q ss_pred             CCCCCcEEeccCCcc
Q 042271          126 NLTSLRVLDVSDNQL  140 (517)
Q Consensus       126 ~l~~L~~L~L~~~~~  140 (517)
                      ..++++.+++-++.+
T Consensus       109 k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccCCcchhhhccCcc
Confidence            666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.93  E-value=0.22  Score=26.38  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=8.7

Q ss_pred             cccEEEccCCcCCccchhhh
Q 042271          470 SIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       470 ~L~~L~l~~n~~~~~~~~~l  489 (517)
                      +|+.|++++|.++.+++.+|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            34444444444444433333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.93  E-value=0.22  Score=26.38  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=8.7

Q ss_pred             cccEEEccCCcCCccchhhh
Q 042271          470 SIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       470 ~L~~L~l~~n~~~~~~~~~l  489 (517)
                      +|+.|++++|.++.+++.+|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            34444444444444433333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.56  E-value=0.0081  Score=51.13  Aligned_cols=88  Identities=10%  Similarity=0.002  Sum_probs=74.1

Q ss_pred             ccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271           27 VGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM  106 (517)
Q Consensus        27 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  106 (517)
                      .+..+...+.||++.++...+.. .|+.+..+..|+++.|.+. ..|..+.....++.++++.|..+ ..|..++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            36788889999999888777766 7888899999999999887 77888888888888888887776 678888999999


Q ss_pred             cEEEccccccC
Q 042271          107 RELHIDNNDLR  117 (517)
Q Consensus       107 ~~L~L~~~~~~  117 (517)
                      +++++-.+.++
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99999888765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.30  E-value=0.31  Score=25.81  Aligned_cols=17  Identities=24%  Similarity=0.303  Sum_probs=7.4

Q ss_pred             cceEEeccccccCCcch
Q 042271           33 SLKFLSLINSSKNTILD   49 (517)
Q Consensus        33 ~L~~L~l~~~~~~~~~~   49 (517)
                      +|++|++++|.+..++.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.30  E-value=0.31  Score=25.81  Aligned_cols=17  Identities=24%  Similarity=0.303  Sum_probs=7.4

Q ss_pred             cceEEeccccccCCcch
Q 042271           33 SLKFLSLINSSKNTILD   49 (517)
Q Consensus        33 ~L~~L~l~~~~~~~~~~   49 (517)
                      +|++|++++|.+..++.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-29
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-29
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  125 bits (313), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 161/576 (27%), Positives = 247/576 (42%), Gaps = 74/576 (12%)
Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-----LDQGLR-- 53
           F+   +L  LD+    +    + L  +G S   LKFL   N S NT+     +  GL+  
Sbjct: 93  FKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFL---NVSSNTLDFPGKVSGGLKLN 148
Query: 54  --QLVHLQELYIGGYDLRGSLPWCLANMTS-LQVLYASSNELTGNISPGLCELVLMRELH 110
             +++ L    I G ++ G   W L++    L+ L  S N+++G++    C  V +  L 
Sbjct: 149 SLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLD 203
Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI 170
           + +N+    +P  L + ++L+ LD+S N+L+ + S + +   T ++ L +S+N F   PI
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV-GPI 260
Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLK 230
              PL +L      +++   E     +       LT + LSG    G  P F      L+
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 231 NADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHS-HQKLATLDVSNNFFR 289
           +  LS  N SG+ P   +                 G     + +    L TLD+S+N F 
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 290 GHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAAR 348
           G I P         L +L L  N F G IP + ++   L  + +S+N L+G IP  + + 
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
              L  L L  N L+G I  E   +  L TL LD N  TGEI   LS C  L  + LS+N
Sbjct: 439 S-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC--- 465
            LTGEIP+W+G L  L  + + NN+  G IP E     SL  LDL+ N    T+P+    
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 466 -----------------------------------FSPASIEQLHLSKNKIEGRLESII- 489
                                              F     EQL+    +    + S + 
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 490 --HDSP------HLVTLDLSCNSLHGSIPNQIGRLP 517
             H SP       ++ LD+S N L G IP +IG +P
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNNSLQ--G 364
           LS +  NGS+ S F     L  +D+S N L+G +    +   C  L+ L +S+N+L   G
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
            + S    L +L  L L  N  +G  +          G  LSD    GE          L
Sbjct: 140 KV-SGGLKLNSLEVLDLSANSISGANVV---------GWVLSDG--CGE----------L 177
Query: 425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
           + + +  N + G + +  C   +L+ LD+S+N+    +P     ++++ L +S NK+ G 
Sbjct: 178 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 485 LESIIHDSPHLVTLDLSCNSLHGSIP 510
               I     L  L++S N   G IP
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIP 261

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  125 bits (313), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 163/582 (28%), Positives = 249/582 (42%), Gaps = 86/582 (14%)
Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-----LDQGLR-- 53
           F+   +L  LD+    +    + L  +G S   LKFL   N S NT+     +  GL+  
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFL---NVSSNTLDFPGKVSGGLKLN 151
Query: 54  --QLVHLQELYIGGYDLRGSLPWCLAN-MTSLQVLYASSNELTGNISPGLCELVLMRELH 110
             +++ L    I G ++ G   W L++    L+ L  S N+++G++    C  V +  L 
Sbjct: 152 SLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLD 206
Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI 170
           + +N+    +P  L + ++L+ LD+S N+L+ + S + +   T ++ L +S+N F   PI
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV-GPI 263
Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKF------QLTFISLSGYIDGGTFPKFLY 224
              PL +L        +  +  E+ +    P F       LT + LSG    G  P F  
Sbjct: 264 PPLPLKSL--------QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 225 HQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHS-HQKLATLDV 283
               L++  LS  N SG+ P   +                 G     + +    L TLD+
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 284 SNNFFRGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
           S+N F G I P         L +L L  N F G IP + ++   L  + +S+N L+G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEG 402
             + +    L  L L  N L+G I  E   +  L TL LD N  TGEI   LS C  L  
Sbjct: 436 SSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
           + LS+N LTGEIP+W+G L  L  + + NN+  G IP E     SL  LDL+ N    T+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 463 PSC--------------------------------------FSPASIEQLHLSKNKIEGR 484
           P+                                       F     EQL+    +    
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 485 LESII---HDSP------HLVTLDLSCNSLHGSIPNQIGRLP 517
           + S +   H SP       ++ LD+S N L G IP +IG +P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNNSLQ--G 364
           LS +  NGS+ S F     L  +D+S N L+G +    +   C  L+ L +S+N+L   G
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
            + S    L +L  L L  N  +G  +          G  LSD    GE          L
Sbjct: 143 KV-SGGLKLNSLEVLDLSANSISGANVV---------GWVLSDG--CGE----------L 180
Query: 425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
           + + +  N + G + +  C   +L+ LD+S+N+    +P     ++++ L +S NK+ G 
Sbjct: 181 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 485 LESIIHDSPHLVTLDLSCNSLHGSIP 510
               I     L  L++S N   G IP
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIP 264

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
           G IP + A +  L  + I++  ++G IP+ ++ +  +L  L  S N+L G +     +L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 375 NLMTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433
           NL+ +  DGN+ +G I +S  S   L   + +S N LTG+IP    NL+ L  + +  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSP 493
           LEG   + F    + + + L+ NS+   L       ++  L L  N+I G L   +    
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 494 HLVTLDLSCNSLHGSIP 510
            L +L++S N+L G IP
Sbjct: 269 FLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 388 GEILESLSKCYLLEGLYLSDNHLTGE--IPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQ 444
           G + ++ ++ Y +  L LS  +L     IP  L NL  L  + +   NNL GPIP    +
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 445 LNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
           L  L  L +++ ++   +P   S   ++  L  S N + G L   I   P+LV +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 504 SLHGSIPNQIG 514
            + G+IP+  G
Sbjct: 160 RISGAIPDSYG 170

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 316 SIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ---GHIFSEKF 371
           +IPS+  AD K   ++D+  N+L+  +P +   R   L +L L++N LQ     IF E  
Sbjct: 30  AIPSNIPADTK---KLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83
Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
            L NL TL +  NK     +    +   L  L L  N L    PR   +L+ L  + +  
Sbjct: 84  -LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKI----EGRLE 486
           N L+      F +L SLK L L NN + R     F     ++ L L  N++    EG  +
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 487 SI-------IHDSPHLVTLDLSCNSL 505
           S+       + ++P     D +CN +
Sbjct: 203 SLEKLKMLQLQENPW----DCTCNGI 224

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
           LA +++LQVLY   N++T NISP L  L  ++ L I NN +    PL  ANL+ L  L  
Sbjct: 131 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTTLRA 186
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLS 179
            DN+++     SPL  L ++ E+ L +N        + PL NLS
Sbjct: 187 DDNKISD---ISPLASLPNLIEVHLKDNQISD----VSPLANLS 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-70
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (769), Expect = 2e-93
 Identities = 130/477 (27%), Positives = 206/477 (43%), Gaps = 29/477 (6%)

Query: 57  HLQELYIGGYDLR---GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
            +  + +    L     ++   L ++T L+ L+ S++ + G++  G      +  L +  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSR 109

Query: 114 NDLRGSLP--LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS-PI 170
           N L G +     L + + L+ L+VS N L      S  + L S+E L LS N    +  +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKF------QLTFISLSGYIDGGTFPKFLY 224
                    + K              N ++          L F+ +S        P FL 
Sbjct: 170 GWVLSDGCGELKHLA--------ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLG 220

Query: 225 HQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVS 284
               L++ D+S   LSG F   +      L+ L ++ N   G    P    + L  L ++
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLA 277

Query: 285 NNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPER 344
            N F G IP  +      L  L+LS N F G++P  F    +LE + +S N  +GE+P  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 345 MAARCFSLEILALSNNSLQGHIFSEKFNLT-NLMTLQLDGNKFTGEILESLSKCYL--LE 401
              +   L++L LS N   G +     NL+ +L+TL L  N F+G IL +L +     L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461
            LYL +N  TG+IP  L N S L  + +  N L G IP     L+ L+ L L  N +   
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 462 LPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           +P       ++E L L  N + G + S + +  +L  + LS N L G IP  IGRL 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  293 bits (753), Expect = 5e-91
 Identities = 139/493 (28%), Positives = 199/493 (40%), Gaps = 42/493 (8%)

Query: 32  PSLKFLSLIN---SSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYAS 88
            SL+ L L     S  N +          L+ L I G  + G +   ++   +L+ L  S
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 89  SNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP 148
           SN  +  I P L +   ++ L I  N L G     ++  T L++L++S NQ    I   P
Sbjct: 209 SNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

Query: 149 LMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
           L    S++ L L+ N F    I              D           N           
Sbjct: 268 L---KSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDL--------SGNHFY-------- 307

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSF 268
                   G  P F      L++  LS  N SG+ P   +     L+ L L+ N   G  
Sbjct: 308 --------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 269 WMPIHS-HQKLATLDVSNNFFRGHIPVEIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKM 326
              + +    L TLD+S+N F G I   +       L +L L  N F G IP + ++   
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
           L  + +S+N L+G IP  +      L  L L  N L+G I  E   +  L TL LD N  
Sbjct: 420 LVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLN 446
           TGEI   LS C  L  + LS+N LTGEIP+W+G L  L  + + NN+  G IP E     
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 447 SLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN--S 504
           SL  LDL+ N    T+P+     S     ++ N I G+    I +         + N   
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 505 LHGSIPNQIGRLP 517
             G    Q+ RL 
Sbjct: 596 FQGIRSEQLNRLS 608

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  275 bits (706), Expect = 3e-84
 Identities = 135/543 (24%), Positives = 211/543 (38%), Gaps = 61/543 (11%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSL----------INSSKN-TILD 49
             K  +LE LD+    +        ++ +    LK L++          ++   N   LD
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 206

Query: 50  ------QG----LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
                       L     LQ L I G  L G     ++  T L++L  SSN+  G I P 
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 100 LCELVLMRELHIDNNDLRGSLPLCLA-NLTSLRVLDVSDNQLTQNISSSPLMHLTSIEEL 158
             +   ++ L +  N   G +P  L+    +L  LD+S N     +        + +E L
Sbjct: 267 PLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESL 323

Query: 159 ILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGT 218
            LS+N+F    + ++ L  +   K  D          +N  +                G 
Sbjct: 324 ALSSNNF-SGELPMDTLLKMRGLKVLDL--------SFNEFS----------------GE 358

Query: 219 FPKFLYH-QHDLKNADLSHLNLSGKFPNWLVENNA-NLERLLLADNSLFGSFWMPIHSHQ 276
            P+ L +    L   DLS  N SG     L +N    L+ L L +N   G     + +  
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
           +L +L +S N+  G IP  +G+ L  L DL L  N   G IP     +K LE + + +N 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK 396
           LTGEIP  ++  C +L  ++LSNN L G I      L NL  L+L  N F+G I   L  
Sbjct: 478 LTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 397 CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
           C  L  L L+ N   G IP  +   S      +  N + G   +        K    + N
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 457 --SIFRTLPSC-FSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
                          ++    +++     G       ++  ++ LD+S N L G IP +I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 514 GRL 516
           G +
Sbjct: 653 GSM 655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  263 bits (674), Expect = 1e-79
 Identities = 123/491 (25%), Positives = 205/491 (41%), Gaps = 40/491 (8%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            +L+ L +  +  +    + +     L+ L I      G +P     + SLQ L  + N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280

Query: 92  LTGNISPGLC-ELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
            TG I   L      +  L +  N   G++P    + + L  L +S N  +  +    L+
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
            +  ++ L LS N F    +    L NLS                         L  + L
Sbjct: 341 KMRGLKVLDLSFNEF-SGELPES-LTNLSA-----------------------SLLTLDL 375

Query: 211 SGYIDGGTFPKFL--YHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSF 268
           S     G     L    ++ L+   L +   +GK P  L  N + L  L L+ N L G+ 
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTI 434

Query: 269 WMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 328
              + S  KL  L +  N   G IP E+  Y+  L  L L  N   G IPS  ++   L 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG 388
            + +S N+LTGEIP+ +  R  +L IL LSNNS  G+I +E  +  +L+ L L+ N F G
Sbjct: 494 WISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNN--NLEGPIPIEFCQLN 446
            I  ++ K        ++ N + G+   ++ N    ++     N    +G    +  +L+
Sbjct: 553 TIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 447 SLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           +    ++++          F    S+  L +S N + G +   I   P+L  L+L  N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 506 HGSIPNQIGRL 516
            GSIP+++G L
Sbjct: 669 SGSIPDEVGDL 679

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  240 bits (615), Expect = 4e-71
 Identities = 127/491 (25%), Positives = 190/491 (38%), Gaps = 62/491 (12%)

Query: 32  PSLKFLSL-INSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
            SL++LSL  N     I D        L  L + G    G++P    + + L+ L  SSN
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 91  ELTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLT-SLRVLDVSDNQLTQNISSS- 147
             +G +    L ++  ++ L +  N+  G LP  L NL+ SL  LD+S N  +  I  + 
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
                 +++EL L NN F    I    L N S+  +            +N L+       
Sbjct: 389 CQNPKNTLQELYLQNNGF-TGKIPPT-LSNCSELVSLHL--------SFNYLS------- 431

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
                    GT P  L     L++  L    L G+ P  L      LE L+L  N L G 
Sbjct: 432 ---------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGE 481

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 327
               + +   L  + +SNN   G IP  IG  L  L  L LS N+F+G+IP+   D + L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN--K 385
             +D++ N   G IP          +   ++ N + G  +    N          GN  +
Sbjct: 541 IWLDLNTNLFNGTIPA-----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 386 FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 445
           F G   E L++        ++     G       N  ++  + M  N L G IP E   +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 446 NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
             L IL+L +N I  ++P       +  L                    L  LDLS N L
Sbjct: 656 PYLFILNLGHNDISGSIPD-----EVGDLR------------------GLNILDLSSNKL 692

Query: 506 HGSIPNQIGRL 516
            G IP  +  L
Sbjct: 693 DGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  237 bits (608), Expect = 3e-70
 Identities = 120/486 (24%), Positives = 194/486 (39%), Gaps = 63/486 (12%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSN 90
            +L  L L  +     +         L+ L +   +  G LP   L  M  L+VL  S N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 91  ELTGNISPGLCEL-VLMRELHIDNNDLRGSLP--LCLANLTSLRVLDVSDNQLTQNISSS 147
           E +G +   L  L   +  L + +N+  G +   LC     +L+ L + +N  T  I  +
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
            L + + +  L LS N+     I    L +LSK                        L  
Sbjct: 414 -LSNCSELVSLHLSFNYL-SGTIPSS-LGSLSK------------------------LRD 446

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
           + L   +  G  P+ L +   L+   L   +L+G+ P+ L  N  NL  + L++N L G 
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGE 505

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 327
               I   + LA L +SNN F G+IP E+G     L+ L+L+ N FNG+IP++       
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSG- 563

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNN--SLQGHIFSEKFNLTNLMTLQLDGNK 385
               I+ N + G+    +       +    + N    QG    +   L+      +    
Sbjct: 564 ---KIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 386 FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 445
           + G    +      +  L +S N L+G IP+ +G++  L  + + +N++ G IP E   L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 446 NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
             L ILDLS+N +   +P   S                           L  +DLS N+L
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMS-----------------------ALTMLTEIDLSNNNL 716

Query: 506 HGSIPN 511
            G IP 
Sbjct: 717 SGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (464), Expect = 4e-50
 Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 15/277 (5%)

Query: 250 NNANLERLLLADNSLFGSFWM---PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
            +  +  + L+   L   F      + S   L +L +SN+   G +          L  L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 307 NLSRNAFNGSIPS--SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG 364
           +LSRN+ +G + +  S      L+ +++S N L          +  SLE+L LS NS+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 365 HIFSEKF---NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL 421
                         L  L + GNK +G++   +S+C  LE L +S N+ +  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 422 SALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI 481
           SAL+ + +  N L G           LK+L++S+N     +P      S++ L L++NK 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKF 281

Query: 482 EGRL-ESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            G + + +      L  LDLS N  +G++P   G   
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (293), Expect = 1e-27
 Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 10/291 (3%)

Query: 33  SLKFLSLINSSKNTI---LDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
           SL  L  +    N +   + Q L  +  L+ L +   DL G +P  L+N T+L  +  S+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 90  NELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL 149
           N LTG I   +  L  +  L + NN   G++P  L +  SL  LD++ N     I ++ +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-M 558

Query: 150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFIS 209
              +      ++ N              + K       +          L         +
Sbjct: 559 FKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 210 LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW 269
           ++  + GG       +   +   D+S+  LSG  P  +  +   L  L L  N + GS  
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIP 673

Query: 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 320
             +   + L  LD+S+N   G IP  +   L  L +++LS N  +G IP  
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM 723

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (510), Expect = 7e-57
 Identities = 107/507 (21%), Positives = 185/507 (36%), Gaps = 24/507 (4%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            ++  L+L ++    +      +   L  L +G   +    P     +  L+VL    NE
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           L+            + ELH+ +N ++           +L  LD+S N L+ +      + 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQ 143

Query: 152 LTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS 211
           L +++EL+LSNN           +F  S  K  +       E          +L  + L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 212 GYIDGGTFPKFLYHQHD---LKNADLSHLNLSGKFPNWLVE-NNANLERLLLADNSLFGS 267
               G +  + L  +     ++N  LS+  LS       +     NL  L L+ N+L   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI---------P 318
                    +L    +  N  +      +   L  +  LNL R+    SI          
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 319 SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK----FNLT 374
            SF  +K LE +++  N + G I   M     +L+ L+LSN+       + +       +
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPNNN 433
            L  L L  NK +    ++ S    LE L L  N +  E+       L  + +I +  N 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 434 LEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIH 490
                   F  + SL+ L L   ++    + PS F P  ++  L LS N I    + ++ 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 491 DSPHLVTLDLSCNSLHGSIPNQIGRLP 517
               L  LDL  N+L     +     P
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGP 528

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  197 bits (502), Expect = 8e-56
 Identities = 92/506 (18%), Positives = 179/506 (35%), Gaps = 38/506 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            +L  L L+++S   I +    +  +L  L +    L  +       + +LQ L  S+N+
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 92  LTGNISPGLCELVLM--RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL 149
           +    S  L        ++L + +N ++   P C   +  L  L +++ QL  +++    
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 150 M--HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
           +    TSI  L LSN+    +  +       +     D           +S     QL +
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
             L        F   L+   +++  +L                  +  +  ++  SL   
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKR----------------SFTKQSISLASLPKI 320

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA----D 323
                   + L  L++ +N   G I   + T L  L  L+LS +  +    ++       
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLD 382
              L  ++++ N+++  I     +    LE+L L  N +   +  +++  L N+  + L 
Sbjct: 380 HSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 383 GNKFTGEILESLSKCYLLEGLYLSDNHLTG--EIPRWLGNLSALEDIIMPNNNLEGPIPI 440
            NK+      S +    L+ L L    L      P     L  L  + + NNN+      
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 441 EFCQLNSLKILDLSNNSIFRTLPSCFSPA---------SIEQLHLSKNKIEGRLESIIHD 491
               L  L+ILDL +N++ R                   +  L+L  N  +     +  D
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 492 SPHLVTLDLSCNSLHGSIPNQIGRLP 517
              L  +DL  N+L+    +      
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQV 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  190 bits (486), Expect = 2e-53
 Identities = 112/537 (20%), Positives = 195/537 (36%), Gaps = 50/537 (9%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLR--QLVHL 58
           F K KNL  LD+    +   +S          +L+ L L N+    +  + L       L
Sbjct: 117 FVKQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 59  QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM---RELHIDNND 115
           ++L +    ++   P C   +  L  L+ ++ +L  +++  LC  +     R L + N+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 116 LRGSLPLCLANL--TSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ-SPISL 172
           L  +       L  T+L +LD+S N L   + +     L  +E   L  N+       SL
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 173 EPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNA 232
             LFN+                  +       L  +     ID  +F         L++ 
Sbjct: 293 HGLFNVR-----------YLNLKRSFTKQSISLASLP---KIDDFSF----QWLKCLEHL 334

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH----SHQKLATLDVSNNFF 288
           ++   ++ G   N       NL+ L L+++               +H  L  L+++ N  
Sbjct: 335 NMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 289 RGHIPVEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERVDISYNQLTGEIPERMAA 347
                      L  L  L+L  N     +    +  ++ +  + +SYN+         A 
Sbjct: 394 SKIESDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA- 451

Query: 348 RCFSLEILALSNNSLQG--HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
              SL+ L L   +L+      S    L NL  L L  N       + L     LE L L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 406 SDNHLT--------GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
             N+L         G    +L  LS L  + + +N  +      F  L  LKI+DL  N+
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 458 IFRTLPSCFSPA-SIEQLHLSKNKIEGRLESIIHDS-PHLVTLDLSCNSLHGSIPNQ 512
           +     S F+   S++ L+L KN I    + +   +  +L  LD+  N    +  + 
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (386), Expect = 7e-40
 Identities = 82/430 (19%), Positives = 143/430 (33%), Gaps = 50/430 (11%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
                 +  L   +P  L   T++ VL+++ NQL   + ++     + +  L +  N   
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTI- 61

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
            S +  E    L   K  +                   L    LS   D           
Sbjct: 62  -SKLEPELCQKLPMLKVLN-------------------LQHNELSQLSDKT-----FAFC 96

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
            +L    L   ++     N       NL  L L+ N L  +        + L  L +SNN
Sbjct: 97  TNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 287 FFRGHIPVEIGTY-LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
             +     E+  +    L  L LS N      P  F  +  L  + ++  QL   + E++
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 346 AARCF--SLEILALSNNSLQGHIFSEKFNL--TNLMTLQLDGNKFTGEILESLSKCYLLE 401
                  S+  L+LSN+ L     +    L  TNL  L L  N       +S +    LE
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNN---------NLEGPIPIEFCQLNSLKILD 452
             +L  N++       L  L  +  + +  +         +L       F  L  L+ L+
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 453 LSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIH----DSPHLVTLDLSCNSLHG 507
           + +N I     + F+   +++ L LS +    R  +           L  L+L+ N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 508 SIPNQIGRLP 517
              +    L 
Sbjct: 396 IESDAFSWLG 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (325), Expect = 7e-32
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 11/246 (4%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
               D S+      +P ++      +  LNL+ N       ++F     L  +D+ +N +
Sbjct: 6   HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKC 397
           +  +   +  +   L++L L +N L           TNL  L L  N           K 
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 398 YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF--CQLNSLKILDLSN 455
             L  L LS N L+         L  L+++++ NN ++     E      +SLK L+LS+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 456 NSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDS---PHLVTLDLSCNSLHGSIPN 511
           N I    P CF     +  L L+  ++   L   +        +  L LS + L  +   
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 512 QIGRLP 517
               L 
Sbjct: 241 TFLGLK 246

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 5e-23
 Identities = 55/361 (15%), Positives = 118/361 (32%), Gaps = 23/361 (6%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESK------PSLKFLSLINSSKNTILDQGLRQ 54
                N+ +L++       + S   +             L+ L++ ++    I       
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 55  LVHLQELY-----IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109
           L++L+ L           L       LA+ + L +L  + N+++   S     L  +  L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 110 HIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
            +  N++   L       L ++  + +S N+  Q   +S    + S++ L+L        
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRVALKNV 469

Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG--------YIDGGTFP 220
             S  P   L      D         + + L    +L  + L          + + G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 221 KFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLAT 280
            FL     L   +L         P  + ++   L+ + L  N+L        ++   L +
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE 340
           L++  N          G     L +L++  N F+ +  S    +  +     +  +L+  
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

Query: 341 I 341
            
Sbjct: 649 Y 649

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (493), Expect = 5e-55
 Identities = 87/497 (17%), Positives = 162/497 (32%), Gaps = 16/497 (3%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            S + L    +   TI +    +L++L  L +    +         +   L  L  ++N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           L       L     ++ L      +     + L N  +L  L +  N ++ +I       
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFP 151

Query: 152 LTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
              ++ L   NN     S   +  L   +      +    +                ++ 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN--DIAGIEPGAFDSAVFQSLNF 209

Query: 211 SGYIDGGTFPKFLYHQH--DLKNADLSHLNLSGKFPNWLVEN-NANLERLLLADNSLFGS 267
            G  +     K L +     L       ++     P         ++E + L  +  F  
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 327
                H    L  LD++       +P  +   L  L  L LS N F      S ++   L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK--FNLTNLMTLQLDGNK 385
             + I  N    E+         +L  L LS++ ++          NL++L +L L  N+
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 386 FTGEILESLSKCYLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNNLEGPIPIEFCQ 444
                 E+  +C  LE L L+   L  +  +    NL  L+ + + ++ L+      F  
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 445 LNSLKILDLSNNSIFRTLPSCFSP----ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
           L +L+ L+L  N   +      +       +E L LS   +    +        +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 501 SCNSLHGSIPNQIGRLP 517
           S N L  S    +  L 
Sbjct: 508 SHNRLTSSSIEALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (451), Expect = 4e-49
 Identities = 89/516 (17%), Positives = 159/516 (30%), Gaps = 41/516 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            +L FL L       I +   +    L  L +    L       L+   +L+ L+     
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           ++      L     +  L++ +N +             L+VLD  +N +   +S   +  
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSS 175

Query: 152 LTSIE--ELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFIS 209
           L       L L+ N                      ++          + T +  L   +
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-SLWLGT 234

Query: 210 LSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL- 264
                   I    F      +  +++ +L          N      + L+ L L    L 
Sbjct: 235 FEDMDDEDISPAVFEGL--CEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLS 291

Query: 265 ---FGSFWMP-------------------IHSHQKLATLDVSNNFFRGHIPVEIGTYLPG 302
               G   +                      +   L  L +  N  R  +       L  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 303 LMDLNLSRNAFNGS--IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
           L +L+LS +    S        ++  L+ +++SYN+    +       C  LE+L L+  
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFT 410

Query: 361 SLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI---PR 416
            L+       F NL  L  L L  +       +       L+ L L  NH          
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 417 WLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHL 476
            L  L  LE +++   +L       F  L  +  +DLS+N +  +     S      L+L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530

Query: 477 SKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512
           + N I   L S++       T++L  N L  +  N 
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 5e-29
 Identities = 76/400 (19%), Positives = 135/400 (33%), Gaps = 27/400 (6%)

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA 190
           +  +  +  L +   + P     S E L  S N      I       L      D   C 
Sbjct: 15  KTYNCENLGLNEIPGTLP----NSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQ 68

Query: 191 ETESHYNSLTPKFQLTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
               H ++   + +L  + L+     ++              LK+       +S      
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP----KALKHLFFIQTGISSIDFIP 124

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGL--M 304
           L  N   LE L L  N +           +KL  LD  NN    ++  E  + L     +
Sbjct: 125 L-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNL 182

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNNSLQ 363
            LNL+ N     I     D  + + ++    Q    I + +  +   SL +    +   +
Sbjct: 183 SLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 364 GHIFS--EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL 421
               +  E     ++ ++ L  + F      +      L+ L L+  HL+ E+P  L  L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 422 SALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF--SPASIEQLHLSKN 479
           S L+ +++  N  E    I      SL  L +  N+    L +    +  ++ +L LS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 480 KIE--GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            IE        + +  HL +L+LS N             P
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 2e-28
 Identities = 54/302 (17%), Positives = 99/302 (32%), Gaps = 17/302 (5%)

Query: 224 YHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283
             +   K  +  +L L+ + P  L     + E L  + N L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPE 343
           +       I  +       L  L L+ N       ++ +  K L+ +      ++  I  
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDF 122

Query: 344 RMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG---EILESLSKCYLL 400
                  +LE L L +N +      + F    L  L    N       E + SL +   L
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP--IEFCQLNSLKILDLSNNSI 458
             L L+ N +   I     + +  + +          I   ++   + SL +    +   
Sbjct: 183 S-LNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 459 FRTLPSCFSP---ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515
               P+ F      S+E ++L K+       +  H    L  LDL+   L   +P+ +  
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 516 LP 517
           L 
Sbjct: 300 LS 301

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 32  PSLKFLSLIN---SSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYAS 88
           P+L+ L+L        N      L+ L  L+ L +   DL         ++  +  +  S
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 89  SNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP 148
            N LT +    L  L  +  L++ +N +   LP  L  L+  R +++  N L    S+  
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

Query: 149 LMH--LTSIEELILSNNHFFQSPISL 172
            +     ++++L  + +   ++P  L
Sbjct: 568 FLEWYKENMQKLEDTEDTLCENPPLL 593

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (491), Expect = 2e-54
 Identities = 86/524 (16%), Positives = 164/524 (31%), Gaps = 57/524 (10%)

Query: 30  SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRG----SLPWCLANMTSLQVL 85
           S   +  LSL     +  +   + QL  L+ L +G +  +       P  ++   S +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 86  YASSNELTGNISPGLCELVL--MRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQN 143
                                 + +  I+++  + S+            +    N +T  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 144 ISSSPLMHLTSIEELILSNNHFFQSPIS----LEPLFNLSKRKTFDSEICAETESHYNSL 199
           +S + +M LT + +  + N+ F    I      E      + KT D +         ++L
Sbjct: 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW--------DNL 248

Query: 200 TPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWL-------VENNA 252
                LT + +    +    P FL    +++  +++                        
Sbjct: 249 K---DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 253 NLERLLLADNSLF-GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRN 311
            ++ + +  N+L        +   +KL  L+   N   G +P   G+    L  LNL+ N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYN 363

Query: 312 AFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG------- 364
                  +     + +E +  ++N+L        A     +  +  S N +         
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-------EIPRW 417
            +    F   N+ ++ L  N+ +    E  S    L  + L  N LT        +    
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 418 LGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS------ 470
             N   L  I +  N L           L  L  +DLS NS F   P+    +S      
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFG 542

Query: 471 -IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
              Q     N+        I   P L  L +  N +   +  +I
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (454), Expect = 3e-49
 Identities = 84/557 (15%), Positives = 160/557 (28%), Gaps = 86/557 (15%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFL---QIVGESKPSLKFLSLINSSKNTILDQGLRQLVH 57
             +   LE L +G     VN        I        K    ++  K  +          
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
           L +  I     + S+            +   SN +T  +S  +  L  +R+ ++ N+   
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 118 G-------------------SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEEL 158
                               +  L   NL  L  ++V +      + +  L  L  ++ +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLI 278

Query: 159 ILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG-YIDGG 217
            ++ N         +    L+                        ++  I +    +   
Sbjct: 279 NVACNRGISGEQLKDDWQALA------------------DAPVGEKIQIIYIGYNNLKTF 320

Query: 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADN-------SLFGSFWM 270
                L     L   +  +  L GK P     +   L  L LA N       +  G    
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFT-- 376

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG-------SIPSSFAD 323
                +++  L  ++N  +    +     +  +  ++ S N            +  +   
Sbjct: 377 -----EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG-------HIFSEKFNLTNL 376
              +  +++S NQ++    E + +    L  + L  N L                N   L
Sbjct: 432 GINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 377 MTLQLDGNKFTGEILESLSKCYL--LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN--- 431
            ++ L  NK T  + +      L  L G+ LS N  +   P    N S L+   + N   
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 432 ---NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESI 488
              N      P       SL  L + +N I R +    +P +I  L +  N       S 
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITP-NISVLDIKDNPNISIDLSY 606

Query: 489 IHDSPHLVTLDLSCNSL 505
           +          L  +  
Sbjct: 607 VCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (419), Expect = 2e-44
 Identities = 58/462 (12%), Positives = 141/462 (30%), Gaps = 77/462 (16%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
           L +   +  L       +G +   +                          LT L VL +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIG------------------------QLTELEVLAL 112

Query: 136 SDNQLTQNISSSP---LMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAET 192
             +    N        +    S E+      H+ ++ +  +P  + S             
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS------------- 159

Query: 193 ESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNA 252
                       L    ++      +  K                N++      +     
Sbjct: 160 -----------DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLT 206

Query: 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNA 312
            L +  + ++         I    +    + +  +      ++    L  L D+ +    
Sbjct: 207 KLRQFYMGNSPFVAE---NICEAWENENSEYAQQY--KTEDLKWD-NLKDLTDVEVYNCP 260

Query: 313 FNGSIPSSFADMKMLERVDISYNQLTGEIPER-------MAARCFSLEILALSNNSLQ-G 364
               +P+    +  ++ ++++ N+       +        A     ++I+ +  N+L+  
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
            + +    +  L  L+   N+  G++  +      L  L L+ N +T     + G    +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 425 EDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI-------FRTLP-SCFSPASIEQLH 475
           E++   +N L+  P   +   ++ +  +D S N I       F  L  + F   ++  ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 476 LSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           LS N+I    + +      L +++L  N L     N +    
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 2e-30
 Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 23/298 (7%)

Query: 235 SHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPV 294
             L++ G  P   + +N  +  L L      G     I    +L  L + ++  + +  +
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 295 EIGTYLPGLMDL---NLSRNAFNGSIPSSFADMKM--LERVDISYNQLTGEIPERMAARC 349
                +   M        R  +  +            L +  I+ +     I +  +   
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRIT 182

Query: 350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNH 409
                +   +N++   +      LT L    +  + F  E +    +             
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQ 236

Query: 410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI---------FR 460
                     NL  L D+ + N      +P     L  +++++++ N           ++
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 461 TLPSCFSPASIEQLHLSKNKI-EGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            L        I+ +++  N +    +E+ +     L  L+   N L G +P   G   
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEI 353

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.1 bits (237), Expect = 7e-21
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 12/219 (5%)

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG 364
           + N   + +      S      +  + +     +G +P+ +  +   LE+LAL ++  + 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKV 119

Query: 365 ----HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL--LEGLYLSDNHLTGEIPRWL 418
                         +    Q     +    ++   +     L    ++ +     I +  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSK 478
                   I   +NN+   +     +L  L+   + N+             + E  +   
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI----CEAWENENSEY 234

Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            +     +    +   L  +++        +P  +  LP
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (489), Expect = 2e-54
 Identities = 88/508 (17%), Positives = 156/508 (30%), Gaps = 39/508 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            S K L L  +    +          LQ L +   +++        +++ L  L  + N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           +          L  +++L     +L       + +L +L+ L+V+ N +          +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 152 LTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLT-------PKF 203
           LT++E L LS+N         L  L  +              +   N +         + 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------SLDLSLNPMNFIQPGAFKEI 200

Query: 204 QLTFISLSGYIDGGTFPKFLYHQ------HDLKNADLSHLNLSGKFPNWLVENNANLERL 257
           +L  ++L    D     K           H L   +  +     KF    +E   NL   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 258 LLADNSLFGSFWMPIHSHQKLA---TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN 314
                 L       I     L    +  + +            +Y  G   L L    F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFG 317

Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ--GHIFSEKFN 372
                    +K L     + N+      E       SLE L LS N L   G      F 
Sbjct: 318 QFPTLKLKSLKRL---TFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPN 431
            T+L  L L  N     +  +      LE L    ++L          +L  L  + + +
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF--SPASIEQLHLSKNKIEGRLESII 489
            +        F  L+SL++L ++ NS              ++  L LS+ ++E    +  
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 490 HDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           +    L  L++S N+           L 
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  183 bits (467), Expect = 3e-51
 Identities = 101/505 (20%), Positives = 192/505 (38%), Gaps = 30/505 (5%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRG-SLPWCLANMTSLQVLYASSN 90
            SL+ L  + ++  ++ +  +  L  L+EL +    ++   LP   +N+T+L+ L  SSN
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 91  ELTGNISPGLCEL----VLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISS 146
           ++       L  L    +L   L +  N +    P     +  L  L + +N  + N+  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218

Query: 147 SPLMHLTSIEELILSNNHFFQ-------SPISLEPLFNLSKRKTFDSEICAETESHYNSL 199
           + +  L  +E   L    F            +LE L NL+  +   + +    +   +  
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 200 TPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLL 259
                ++  SL              +    ++ +L +      FP   +++   L     
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSN 335

Query: 260 ADNSLFGSFWMPIHSHQKLATLDVSNNF--FRGHIPVEIGTYLPGLMDLNLSRNAFNGSI 317
              + F    +P      L  LD+S N   F+G            L  L+LS N     +
Sbjct: 336 KGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-M 388

Query: 318 PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLM 377
            S+F  ++ LE +D  ++ L       +     +L  L +S+   +         L++L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 378 TLQLDGNKFTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436
            L++ GN F    L +  ++   L  L LS   L    P    +LS+L+ + M +NN   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEG--RLESIIHDS 492
                +  LNSL++LD S N I  +        P+S+  L+L++N        +S +   
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRLP 517
                L +    +  + P+    +P
Sbjct: 569 KDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  156 bits (397), Expect = 1e-41
 Identities = 72/454 (15%), Positives = 145/454 (31%), Gaps = 50/454 (11%)

Query: 79  MTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
             S + L  S N L    S        ++ L +   +++        +L+ L  L ++ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 139 QLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNS 198
            +   ++      L+S+++L+    +   + +   P+ +L                    
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKT------------------ 125

Query: 199 LTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW---LVENNANL 254
                 L  ++++   I     P++  +  +L++ DLS   +   +      L +     
Sbjct: 126 ------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN 314
             L L+ N +            +L  L + NNF   ++       L GL    L    F 
Sbjct: 180 LSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 315 GSIPSSFADMKMLE--------RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
                   D   LE           ++Y     +    +     ++   +L + +++   
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-- 296

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
             +         L+L   KF            L     L+     G       +L +LE 
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 427 IIMPNNNL--EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
           + +  N L  +G          SLK LDLS N +     +      +E L    + ++  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 485 LE-SIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
            E S+     +L+ LD+S      +       L 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (297), Expect = 2e-28
 Identities = 67/435 (15%), Positives = 125/435 (28%), Gaps = 69/435 (15%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI------LDQGLRQ 54
            +    LE   +   +     +  +    +   L  L++       +      +      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 55  LVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114
           L ++    +    +        +     Q L   + +           L L     +   
Sbjct: 281 LTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFT 333

Query: 115 DLRGSLPLCLANLTSLRVLDVSDNQLT-QNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
             +G       +L SL  LD+S N L+ +   S      TS++ L LS N       +  
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
            L                                                     L++ D
Sbjct: 394 GLEQ---------------------------------------------------LEHLD 402

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
             H NL       +  +  NL  L ++      +F    +    L  L ++ N F+ +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
            +I T L  L  L+LS+       P++F  +  L+ +++S+N               SL+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQ 521

Query: 354 ILALSNNSLQGHIFSEKFNL-TNLMTLQLDGNKFTG--EILESLSKCYLLEGLYLSDNHL 410
           +L  S N +      E  +  ++L  L L  N F    E    L        L +    +
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 411 TGEIPRWLGNLSALE 425
               P     +  L 
Sbjct: 582 ECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (288), Expect = 2e-27
 Identities = 69/411 (16%), Positives = 122/411 (29%), Gaps = 56/411 (13%)

Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRK 182
           C+  + ++    +       N    P     S + L LS N                   
Sbjct: 3   CVEVVPNITYQCME-----LNFYKIPDNLPFSTKNLDLSFNPL----------------- 40

Query: 183 TFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242
                          S     +L  + LS                 L    L+   +   
Sbjct: 41  ---------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG 302
                    ++L++L+  + +L      PI   + L  L+V++N  +     E  + L  
Sbjct: 92  ALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 303 LMDLNLSRNAFNGSIPSSFADMKMLE----RVDISYNQLTGEIPERMAARCFSLEILALS 358
           L  L+LS N       +    +  +      +D+S N +    P   A +   L  L L 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLR 208

Query: 359 NNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEI---------LESLSKCYLLEGLYLSDN 408
           NN    ++       L  L   +L   +F  E          LE L    + E      +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP 468
           +   +I      L+ +    + +  +E      +      + L+L N    +        
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK- 325

Query: 469 ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH--GSIPNQIGRLP 517
            S+++L  + NK       +  D P L  LDLS N L   G          
Sbjct: 326 -SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 2e-53
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 7/255 (2%)

Query: 261 DNSLFGSFWMPIHSHQKLATLDVSNNFFRG--HIPVEIGTYLPGLMDLNLS-RNAFNGSI 317
           + +  G          ++  LD+S         IP  +   LP L  L +   N   G I
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93

Query: 318 PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLM 377
           P + A +  L  + I++  ++G IP+ ++ +  +L  L  S N+L G +     +L NL+
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 378 TLQLDGNKFTGEILESLSKC-YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436
            +  DGN+ +G I +S      L   + +S N LTG+IP    NL+ L  + +  N LEG
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

Query: 437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLV 496
              + F    + + + L+ NS+   L       ++  L L  N+I G L   +     L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 497 TLDLSCNSLHGSIPN 511
           +L++S N+L G IP 
Sbjct: 272 SLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 3e-47
 Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 5/266 (1%)

Query: 217 GTFPKFLYHQHDLKNADLSHLNLSGKFP-NWLVENNANLERLLLAD-NSLFGSFWMPIHS 274
           G         + + N DLS LNL   +P    + N   L  L +   N+L G     I  
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 275 HQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISY 334
             +L  L +++    G IP  +   +  L+ L+ S NA +G++P S + +  L  +    
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 335 NQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESL 394
           N+++G IP+   +       + +S N L G I     NL NL  + L  N   G+     
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLS 454
                 + ++L+ N L  ++ + +G    L  + + NN + G +P    QL  L  L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 455 NNSIFRTLPSCFSPASIEQLHLSKNK 480
            N++   +P   +    +    + NK
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  157 bits (400), Expect = 3e-44
 Identities = 79/352 (22%), Positives = 118/352 (33%), Gaps = 83/352 (23%)

Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQL--TQNISSSPLMHLTSIEELILSNNHFF 166
               N    G L         +  LD+S   L     I SS L +L  +  L +      
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGG---- 85

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
                                         N+L                 G  P  +   
Sbjct: 86  -----------------------------INNLV----------------GPIPPAIAKL 100

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
             L    ++H N+SG  P++L    + +                     + L TLD S N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFL----SQI---------------------KTLVTLDFSYN 135

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV-DISYNQLTGEIPERM 345
              G +P  I   LP L+ +    N  +G+IP S+     L     IS N+LTG+IP   
Sbjct: 136 ALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
           A    +L  + LS N L+G       +  N   + L  N    ++   +     L GL L
Sbjct: 195 AN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDL 251

Query: 406 SDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
            +N + G +P+ L  L  L  + +  NNL G IP     L    +   +NN 
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  150 bits (382), Expect = 1e-41
 Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 6/217 (2%)

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE--IPERMAARCFSLEILALSN-NS 361
             +     + G +  +      +  +D+S   L     IP  +A     L  L +   N+
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINN 88

Query: 362 LQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL 421
           L G I      LT L  L +     +G I + LS+   L  L  S N L+G +P  + +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 422 SALEDIIMPNNNLEGPIPIEFCQLNSL-KILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
             L  I    N + G IP  +   + L   + +S N +   +P  F+  ++  + LS+N 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 481 IEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           +EG    +     +   + L+ NSL   +  ++G   
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (350), Expect = 3e-37
 Identities = 63/320 (19%), Positives = 109/320 (34%), Gaps = 61/320 (19%)

Query: 70  GSLPWCLANMTSLQVLYASSNELTG--NISPGLCELVLMRELHI-DNNDLRGSLPLCLAN 126
           G L         +  L  S   L     I   L  L  +  L+I   N+L G +P  +A 
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 127 LTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS 186
           LT L  L ++   ++  I    L  + ++  L  S N                       
Sbjct: 100 LTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN----------------------- 135

Query: 187 EICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
                                 +LSG +     P  +    +L         +SG  P+ 
Sbjct: 136 ----------------------ALSGTL-----PPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 247 LVENNANLERLLLADNSLFGSFWMPIH-SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305
               +     + ++ N L G   +P   ++  LA +D+S N   G   V  G+       
Sbjct: 169 YGSFSKLFTSMTISRNRLTGK--IPPTFANLNLAFVDLSRNMLEGDASVLFGS-DKNTQK 225

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH 365
           ++L++N+    +       K L  +D+  N++ G +P+ +  +   L  L +S N+L G 
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGE 283

Query: 366 IFSEKFNLTNLMTLQLDGNK 385
           I  +  NL          NK
Sbjct: 284 I-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (323), Expect = 2e-33
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 83/309 (26%)

Query: 55  LVHLQELYIGGY-DLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
           L +L  LYIGG  +L G +P  +A +T L  LY +   ++G I   L ++  +  L    
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTS-IEELILSNNHFFQSPISL 172
           N L G+LP  +++L +L  +    N+++  I  S     +     + +S N      I  
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNR-LTGKIPP 192

Query: 173 EPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNA 232
               NL+                                                 L   
Sbjct: 193 T-FANLN-------------------------------------------------LAFV 202

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
           DLS   L G           + +                         + ++ N     +
Sbjct: 203 DLSRNMLEGDASVLF----GSDKNTQ---------------------KIHLAKNSLAFDL 237

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
             ++G     L  L+L  N   G++P     +K L  +++S+N L GEIP+         
Sbjct: 238 G-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRF 293

Query: 353 EILALSNNS 361
           ++ A +NN 
Sbjct: 294 DVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.4 bits (246), Expect = 6e-23
 Identities = 54/290 (18%), Positives = 95/290 (32%), Gaps = 81/290 (27%)

Query: 54  QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
           +L  L  LYI   ++ G++P  L+ + +L  L  S N L+G + P +  L  +  +  D 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 114 NDLRGSLPLCLANLTSL-RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISL 172
           N + G++P    + + L   + +S N+LT  I  +   +L ++  + LS N         
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNM-------- 208

Query: 173 EPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNA 232
                                                L G               + +  
Sbjct: 209 -------------------------------------LEGDA-----SVLFGSDKNTQKI 226

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
            L+  +L+       V  + NL                          LD+ NN   G +
Sbjct: 227 HLAKNSLAFDLGK--VGLSKNLN------------------------GLDLRNNRIYGTL 260

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
           P  +   L  L  LN+S N   G IP     ++  +    + N+     P
Sbjct: 261 PQGLTQ-LKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNKCLCGSP 308

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (467), Expect = 3e-50
 Identities = 79/503 (15%), Positives = 154/503 (30%), Gaps = 52/503 (10%)

Query: 52  LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI 111
           L     +  L + G+  +G +P  +  +T L+VL   ++  T +      E +       
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 112 DNNDLRGSL-PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE----ELILSNNHFF 166
             + +R     + L     L + D+  + + +N    P+   + I     ++    N   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
               +++ L  L      +S                      +               + 
Sbjct: 439 FISKAIQRLTKLQIIYFANSPF--------TYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP---------IHSHQK 277
            DL + +L +     + P++L  +   L+ L +A N    +  +            +  K
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 278 LATLDVSNNFFRGHIPVEIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
           +    +  N      P       +  L  L+   N        +F     L  + + YNQ
Sbjct: 550 IQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTG---EILE 392
           +  EIPE   A    +E L  S+N L+         ++  + ++    NK       I  
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 393 SLSKCYL--LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE-------GPIPIEFC 443
           S+          + LS N +           S +  II+ NN +         P    + 
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 444 QLNSLKILDLSNNSIFRTLPSCFSPA---SIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
               L  +DL  N +  +L   F       +  + +S N       +   +S  L    +
Sbjct: 726 NTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783

Query: 501 ------SCNSLHGSIPNQIGRLP 517
                   N +    P  I   P
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCP 806

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (426), Expect = 8e-45
 Identities = 85/535 (15%), Positives = 153/535 (28%), Gaps = 89/535 (16%)

Query: 5   KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSS-KNTILDQGLRQLVHLQELYI 63
           + L   D+ +  ++ N     I  +S+ SLK   + N + + T + + +++L  LQ +Y 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 64  GGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLC 123
                              +   +   +   N       L  + ++ + N      LP  
Sbjct: 456 ANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 124 LANLTSLRVLDVSDNQLTQNISSSP--------LMHLTSIEELILSNNHFFQSPISLEPL 175
           L +L  L+ L+++ N+                       I+   +  N+  + P S   L
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS-L 569

Query: 176 FNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLS 235
             + K    D          +N +                      F           L+
Sbjct: 570 QKMVKLGLLD--------CVHNKVR-----------------HLEAF----GTNVK--LT 598

Query: 236 HLNLSG----KFPNWLVENNANLERLLLADNSLFG-SFWMPIHSHQKLATLDVSNNFFRG 290
            L L      + P         +E L  + N L          S   + ++D S N    
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 291 HIPVEIGTYLPG-----LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
                I   +          + LS N         FA    +  + +S N +T  IPE  
Sbjct: 659 -EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE-- 714

Query: 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL--LEGL 403
                          +          N   L T+ L  NK T  + +      L  L  +
Sbjct: 715 ---------------NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758

Query: 404 YLSDNHLTGEIPRWLGNLSALEDI------IMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
            +S N  +   P    N S L+            N +    P       SL  L + +N 
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 458 IFRTLPSCFSPASIEQLHLSKNKI-EGRLESIIHD-SPHLVTLDLSCNSLHGSIP 510
           I R +    +P  +  L ++ N      + S+       +  L            
Sbjct: 818 I-RKVDEKLTP-QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (260), Expect = 1e-23
 Identities = 45/286 (15%), Positives = 82/286 (28%), Gaps = 19/286 (6%)

Query: 235 SHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPV 294
             L++ G  P   ++NN  +  L LA     G     I    +L  L    +       +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 295 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG--EIPERMAARCFSL 352
                L   M                    + L   D+  + +    E+         SL
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 353 EILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
           +   + N + +    S+    LT L  +    + FT + +         E          
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQY 480

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI---------FRTL 462
                   NL  L D+ + N      +P     L  L+ L+++ N           +  L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 463 PSCFSP-ASIEQLHLSKNKIEG-RLESIIHDSPHLVTLDLSCNSLH 506
                    I+  ++  N +E     + +     L  LD   N + 
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 26/220 (11%), Positives = 68/220 (30%), Gaps = 14/220 (6%)

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG 364
           + N   + +         +   +  + ++     G +P+ +  +   L++L+   +S   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETV 361

Query: 365 HI-------FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW 417
                     +   +      +++   K   +  + L+   LL+     +  +       
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477
             +L   + I    N +   I     +L  L+I+  +N+               E  +  
Sbjct: 422 RISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPF-TYDNIA---VDWEDANSD 475

Query: 478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
             K     E    +   L  ++L        +P+ +  LP
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 38/325 (11%), Positives = 85/325 (26%), Gaps = 66/325 (20%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQ-GLRQLVHLQ 59
           F     L  L +   Q+       +        ++ L   ++    I +    + +  + 
Sbjct: 591 FGTNVKLTDLKLDYNQI---EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 60  ELY-----IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114
            +      IG      S         +   +  S NE+    +        +  + + NN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 115 DLR-------GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ 167
            +                N   L  +D+  N+LT          L  +  + +S N F  
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-- 765

Query: 168 SPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH 227
                          +F ++    +           QL    +                 
Sbjct: 766 --------------SSFPTQPLNSS-----------QLKAFGIRH--------------- 785

Query: 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN- 286
                D     +  ++P  +     +L +L +  N +     +      +L  LD+++N 
Sbjct: 786 ---QRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDIRK---VDEKLTPQLYILDIADNP 838

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRN 311
                +         G+  L   + 
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKT 863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (431), Expect = 3e-46
 Identities = 78/507 (15%), Positives = 157/507 (30%), Gaps = 38/507 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            S K + L  +    +          LQ L +   ++          +  L  L  + N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           +          L  +  L      L       +  L +L+ L+V+ N +      +   +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 152 LTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLT-------PKF 203
           LT++  + LS N+    +   L+ L    +            +   N +           
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-------SLDMSLNPIDFIQDQAFQGI 204

Query: 204 QLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNA-------NLE 255
           +L  ++L G +         L +   L    L       +    + E +         ++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 256 RLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG 315
              L   + F    +  H    ++ + ++    +    +E          L++ R     
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQ 321

Query: 316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ--GHIFSEKFNL 373
                  D+  L+ + ++ N+ +    +       SL  L LS N+L   G         
Sbjct: 322 F---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPNN 432
            +L  L L  N     +  +      L+ L    + L          +L  L  + +   
Sbjct: 376 NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 433 NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF--SPASIEQLHLSKNKIEGRLESIIH 490
           N +      F  L SL  L ++ NS      S    +  ++  L LSK ++E     +  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 491 DSPHLVTLDLSCNSLHGSIPNQIGRLP 517
               L  L++S N+L     +   +L 
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLY 521

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  164 bits (416), Expect = 3e-44
 Identities = 85/493 (17%), Positives = 162/493 (32%), Gaps = 32/493 (6%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
             L  L L  +   +        L  L+ L      L     + +  + +L+ L  + N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 92  LTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR----VLDVSDNQLTQNISS 146
           +    +      L  +  + +  N ++      L  L         LD+S N +   I  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQD 198

Query: 147 SPLMHLTSIEELILSNNH--------FFQSPISLEPLFNLSKRKTFDSEICAETESHYNS 198
                +  + EL L  N           Q+   L     +      +  +     S    
Sbjct: 199 QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 199 LTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLL 258
           L     +    L+   D        +   ++    L+ +++           +   + L 
Sbjct: 258 L-CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV---PKHFKWQSLS 313

Query: 259 LADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 318
           +    L      P      L +L ++ N             LP L  L+LSRNA + S  
Sbjct: 314 IIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGC 367

Query: 319 SSFADMKM--LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTN 375
            S++D+    L  +D+S+N     I          L+ L   +++L+       F +L  
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 376 LMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNNL 434
           L+ L +       +          L  L ++ N            N + L  + +    L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA-SIEQLHLSKNKIEGRLESIIHDSP 493
           E      F  L+ L++L++S+N++     S ++   S+  L  S N+IE     + H   
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 494 HLVTLDLSCNSLH 506
            L   +L+ NS+ 
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (413), Expect = 8e-44
 Identities = 102/505 (20%), Positives = 175/505 (34%), Gaps = 34/505 (6%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
             L++L L      TI D+    L HL  L + G  ++   P   + +TSL+ L A   +
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           L    S  + +L+ +++L++ +N +    LP   +NLT+L  +D+S N +   I+ + L 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174

Query: 151 HLT----SIEELILSNNHFFQSPISLEPLFNLSK---------RKTFDSEICAETESHYN 197
            L         L +S N              L +              + +      H +
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 198 SLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERL 257
            L         +L    +             +    L++ N             AN+  +
Sbjct: 235 RLILGEFKDERNLE-IFEPSIMEGL--CDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAM 290

Query: 258 LLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI 317
            LA  S+   +   +  H K  +L +     +    ++    LP L  L L+ N   GSI
Sbjct: 291 SLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMN--KGSI 342

Query: 318 PSSFADMKMLERVDISYNQLTGEIPERMAA-RCFSLEILALSNNSLQGHIFSEKF-NLTN 375
                 +  L  +D+S N L+       +     SL  L LS N     I S  F  L  
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEE 400

Query: 376 LMTLQLDGNKFTGEI-LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
           L  L    +         +      L  L +S  +   +       L++L  + M  N+ 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 435 EGPIPIE-FCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDS 492
           +       F    +L  LDLS   + +     F     ++ L++S N +     S  +  
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRLP 517
             L TLD S N +  S         
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (297), Expect = 2e-28
 Identities = 73/421 (17%), Positives = 140/421 (33%), Gaps = 45/421 (10%)

Query: 1   FRKFKNLEHLDMGEVQ-VDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQ 59
           F    NL H+D+       +  + LQ + E+      L +  +  + I DQ  + +  L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207

Query: 60  ELYIGGYDLRGSLPW-CLANMTSLQVLYASSNELTGNIS---------PGLCELVLMREL 109
           EL + G     ++   CL N+  L V      E     +          GLC++  + E 
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEF 266

Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ------------------NISSSPLMH 151
            +   +      +    L ++  + ++   +                     +   P + 
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 152 LTSIEELILSNNHF-----FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLT 206
           L  ++ L L+ N         +  SL  L +LS+     S  C+ ++   NSL     L+
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYL-DLSRNALSFSGCCSYSDLGTNSLR-HLDLS 384

Query: 207 FISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG 266
           F                    +L++ D  H  L          +   L  L ++  +   
Sbjct: 385 FNGAI------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 267 SFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 326
            F         L TL ++ N F+ +    +      L  L+LS+          F  +  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
           L+ +++S+N L   +      + +SL  L  S N ++      +    +L    L  N  
Sbjct: 499 LQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 387 T 387
            
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (270), Expect = 5e-25
 Identities = 77/439 (17%), Positives = 136/439 (30%), Gaps = 80/439 (18%)

Query: 118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFN 177
           GSL  C+  + ++      D +L++     P    +S + + LS N              
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSKVPDDIP----SSTKNIDLSFNPL------------ 44

Query: 178 LSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG----YIDGGTFPKFLYHQHDLKNAD 233
                               S +   +L ++ LS      I+   +    +  H L N  
Sbjct: 45  --------------KILKSYSFSNFSELQWLDLSRCEIETIEDKAW----HGLHHLSNLI 86

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
           L+   +    P        +LE L+  +  L      PI     L  L+V++NF      
Sbjct: 87  LTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML----ERVDISYNQLTGEIPERMAARC 349
               + L  L+ ++LS N       +    ++        +D+S N +     +  A + 
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--AFQG 203

Query: 350 FSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTG---------EILESLSKCYL 399
             L  L L  N    +I      NL  L   +L   +F            I+E L    +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP-------------------I 440
            E   L+  +   +       L+ +  + +   +++                        
Sbjct: 264 DE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 441 EFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD--SPHLVTL 498
               L  LK L L+ N    +      P S+  L LS+N +         D  +  L  L
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 499 DLSCNSLHGSIPNQIGRLP 517
           DLS N     +      L 
Sbjct: 382 DLSFNGAI-IMSANFMGLE 399

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (384), Expect = 2e-39
 Identities = 92/501 (18%), Positives = 168/501 (33%), Gaps = 53/501 (10%)

Query: 53  RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHI 111
           + L   + L +    +R         +  LQ+L   S      I       L  +R L +
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ-NISSSPLMHLTSIEELILSNNHFFQSPI 170
            ++ +    P     L  L  L +    L+   +      +L ++  L LS N      +
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--L 138

Query: 171 SLEPLF-NLSKRKTFDSEICAETESHYNSLTP--KFQLTFISLSG-YIDGGTFPKFLYHQ 226
            L P F  L+  K+ D           + L P     L+F SL+   +       +    
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNA----------------NLERLLLADNSL--FGSF 268
           +  +N  L  L++SG      +  N                 ++       +++      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 269 WMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 328
                +   +  LD+S+ F    +   +   L  L  LNL+ N  N     +F  +  L+
Sbjct: 259 TFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFT 387
            +++SYN L  E+          +  + L  N +   I  + F  L  L TL L  N  T
Sbjct: 318 VLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT 375

Query: 388 G-EILESLSKCYL--------------LEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPN 431
               + S+   +L                 ++LS+N L   +I  +L  +  L+ +I+  
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 432 NNLEGPIPIEFCQ-LNSLKILDLSNNSIFRTLPSCFSPA------SIEQLHLSKNKIEGR 484
           N        +      SL+ L L  N +     +            ++ L+L+ N +   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 485 LESIIHDSPHLVTLDLSCNSL 505
              +      L  L L+ N L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (367), Expect = 3e-37
 Identities = 107/545 (19%), Positives = 201/545 (36%), Gaps = 55/545 (10%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGES---KPSLKFLSLINSSKNTILDQGLRQLVH 57
           F   + L+ L++G        + L I  E+    P+L+ L L +S    +     + L H
Sbjct: 44  FPFLEQLQLLELGS-----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 58  LQELYIGGYDLRGSL--PWCLANMTSLQVLYASSNELTG-NISPGLCELVLMRELHIDNN 114
           L EL +    L  ++       N+ +L  L  S N++    + P   +L  ++ +   +N
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 115 DLRGSLPLCLANLT--SLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISL 172
            +       L  L   +L    ++ N L   +S      +     ++L       +  ++
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 173 EPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG----YIDGGTFPKFLYHQHD 228
           +   N S          A ++S   SL     +             D  TF         
Sbjct: 219 DITGNFSN---------AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS-- 267

Query: 229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFF 288
           +++ DLSH  +     + + E   +L+ L LA N +        +    L  L++S N  
Sbjct: 268 VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 289 RGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLT---------- 338
              +       LP +  ++L +N        +F  ++ L+ +D+  N LT          
Sbjct: 327 G-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 339 ----GEIPERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILES 393
               G     +     +  ++ LS N L+   I      + +L  L L+ N+F+    + 
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 394 L-SKCYLLEGLYLSDNHLTGEI-----PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447
             S+   LE L+L +N L               LS L+ + + +N L    P  F  L +
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 448 LKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG 507
           L+ L L++N +   L     PA++E L +S+N++      +      L  LD++ N    
Sbjct: 506 LRGLSLNSNRL-TVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561

Query: 508 SIPNQ 512
                
Sbjct: 562 ECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (308), Expect = 1e-29
 Identities = 82/431 (19%), Positives = 150/431 (34%), Gaps = 35/431 (8%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
             L +  N +R         L  L++L++        I      +L ++  L L ++  +
Sbjct: 27  ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 167 Q-SPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG-YIDGGTFPKFLY 224
              P + + LF+L + + +   + ++             LT + LS   I          
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 225 HQHDLKNADLSHLNLSGKFPNWLVE-NNANLERLLLADNSLFGSFWMPIHS------HQK 277
             + LK+ D S   +     + L       L    LA NSL+    +          +  
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 278 LATLDVSNNFFRGHIP-----------VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 326
           L  LDVS N +   I                     +M      +       ++FA +  
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 327 --LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDG 383
             +  +D+S+  +   +  R+      L++L L+ N +   I  E F  L NL  L L  
Sbjct: 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSY 323

Query: 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
           N        +      +  + L  NH+     +    L  L+ + + +N L         
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378

Query: 444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG-RLESIIHDSPHLVTLDLSC 502
            + S+  + LS N +  TLP      +   +HLS+N++E   +   +   PHL  L L+ 
Sbjct: 379 FIPSIPDIFLSGNKL-VTLPKINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 503 NSLHGSIPNQI 513
           N       +Q 
Sbjct: 436 NRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.0 bits (244), Expect = 1e-21
 Identities = 52/305 (17%), Positives = 104/305 (34%), Gaps = 32/305 (10%)

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
            D + A     NL+ + P    +     ERLLL+ N +           ++L  L++ + 
Sbjct: 4   FDGRIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE-IPERM 345
           +    I  E    LP L  L+L  +      P +F  +  L  + + +  L+   + +  
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 346 AARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTG---EILESLSKCYLLE 401
                +L  L LS N ++       F  L +L ++    N+        LE L    L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 402 GLYLSDNHLTGEIPR-WLGNLSALEDIIMP-----------------NNNLEGPIPIEFC 443
              L+ N L   +   W   ++   ++++                  +N +         
Sbjct: 179 -FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 444 QLNSLKILDLSNNSIFRTLPSCFSP---ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
             + +       ++I     + F+    +S+  L LS   +      +      L  L+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 501 SCNSL 505
           + N +
Sbjct: 298 AYNKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 14/196 (7%)

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTG 388
               +  LT ++P+ +     + E L LS N ++  + +  F  L  L  L+L       
Sbjct: 9   AFYRFCNLT-QVPQVLN----TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPL 62

Query: 389 EI-LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI--PIEFCQL 445
            I  E+      L  L L  + +    P     L  L ++ +    L   +     F  L
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 446 NSLKILDLSNNSIFR-TLPSCFSP-ASIEQLHLSKNKIEGRLESIIHD--SPHLVTLDLS 501
            +L  LDLS N I    L   F    S++ +  S N+I    E  +       L    L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 502 CNSLHGSIPNQIGRLP 517
            NSL+  +    G+  
Sbjct: 183 ANSLYSRVSVDWGKCM 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (373), Expect = 2e-38
 Identities = 91/505 (18%), Positives = 160/505 (31%), Gaps = 33/505 (6%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            S K L L  +    +          LQ L +   +++        +++ L  L  + N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           +          L  +++L     +L       + +L +L+ L+V+ N +          +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 152 LTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLT-------PKF 203
           LT++E L LS+N         L  L  +              +   N +         + 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------SLDLSLNPMNFIQPGAFKEI 200

Query: 204 QLTFISLSGYIDGGTFPKFLY------HQHDLKNADLSHLNLSGKFPNWLVENNANLERL 257
           +L  ++L    D     K           H L   +  +     KF    +E   NL   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 258 LLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI 317
                 L       I     L  +   +        V+  +Y  G   L L    F    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 318 PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ--GHIFSEKFNLTN 375
                  K L+R+  + N+      E       SLE L LS N L   G      F  T+
Sbjct: 321 TLKL---KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 376 LMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPNNNL 434
           L  L L  N     +  +      LE L    ++L          +L  L  + + + + 
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA--SIEQLHLSKNKIEGRLESIIHDS 492
                  F  L+SL++L ++ NS              ++  L LS+ ++E    +  +  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRLP 517
             L  L+++ N L         RL 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 3e-34
 Identities = 95/526 (18%), Positives = 183/526 (34%), Gaps = 50/526 (9%)

Query: 1   FRKFKNLEHLDMGEVQVDV--NTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHL 58
           F  F  L+ LD+   ++    + ++  +       L  L L  +   ++       L  L
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSL-----SHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 59  QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT-GNISPGLCELVLMRELHIDNNDLR 117
           Q+L     +L     + + ++ +L+ L  + N +    +      L  +  L + +N ++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 118 GSLPLCLANLTSLRV----LDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
                 L  L  + +    LD+S N +   I       +  + +L L NN F    +   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNN-FDSLNVMKT 219

Query: 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
            +  L+  +     +      +  +L    +     L                  ++   
Sbjct: 220 CIQGLAGLEVHRLVLG--EFRNEGNLEKFDKSALEGL--------------CNLTIEEFR 263

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
           L++L+        L     N+    L   ++          +     L++ N  F     
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT 321

Query: 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSL 352
           ++    L  L  L  + N   G    S  D+  LE +D+S N L+      +      SL
Sbjct: 322 LK----LKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT----GEILESLSKCYLLEGLYLSDN 408
           + L LS N +   + S    L  L  L    +         +  SL     L  L +S  
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISHT 431

Query: 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLSNNSIFRTLPSCFS 467
           H           LS+LE + M  N+ +     + F +L +L  LDLS   + +  P+ F+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 468 PA-SIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512
              S++ L+++ N+++   + I      L  + L  N    S P  
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 73/415 (17%), Positives = 141/415 (33%), Gaps = 41/415 (9%)

Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRK 182
           C+  + ++      +    +   + P     S + L LS N      +     F+  + +
Sbjct: 3   CVEVVPNITY-QCMELNFYKIPDNLP----FSTKNLDLSFNPL--RHLGSYSFFSFPELQ 55

Query: 183 TFDSEICAETESHYNSLTPKFQLTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLN 238
             D   C        +      L+ + L+G     +  G F         L+       N
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETN 111

Query: 239 LSGKFPNWLVENNANLERLLLADNSL-FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG 297
           L+    N+ + +   L+ L +A N +          +   L  LD+S+N  +  I     
Sbjct: 112 LA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL 169

Query: 298 TYLPGL----MDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353
             L  +    + L+LS N  N   P +F +++ L ++ +  N  +  + +        LE
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 354 ILALSNNSLQGHIFSEKF------NLTNLMTLQLDGNK---FTGEILESLSKCYLLEGLY 404
           +  L     +     EKF       L NL   +        +  +I++  +    +    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 405 LSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS 464
           L    +   +  +  N    + + + N            +L SLK L  ++N       S
Sbjct: 289 LVSVTIE-RVKDFSYNFG-WQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKG-GNAFS 342

Query: 465 CFSPASIEQLHLSKNKIE--GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
                S+E L LS+N +   G        +  L  LDLS N +  ++ +    L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (350), Expect = 2e-35
 Identities = 97/505 (19%), Positives = 178/505 (35%), Gaps = 38/505 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            ++K L L  +    I    LR   +LQ L +    +         ++ SL+ L  S N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 92  LTGNISPGLCE-LVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPL 149
           L+ ++S      L  ++ L++  N  +   +     NLT+L+ L + + +    I     
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 150 MHLTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
             LTS+ EL +           SL+ + ++       SE     E   + L+    L   
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLV---ENNANLERLLLADNSLF 265
             +      +          +K        L+ +  N L+        L  +   D +L 
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 266 GSFWMPIHSHQK-----------LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN 314
           G                      +  L +   +   +    + + L  +  + +  +   
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF 323

Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF--SLEILALSNNSLQ-----GHIF 367
               S    +K LE +D+S N +  E  +  A +    SL+ L LS N L+     G I 
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 368 SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI 427
                L NL +L +  N F   + +S      +  L LS   +   +         LE +
Sbjct: 384 L---TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVL 436

Query: 428 IMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLES 487
            + NNNL+    +    L  L+ L +S N + +TLP       +  + +S+N+++   + 
Sbjct: 437 DVSNNNLDS-FSLF---LPRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDG 491

Query: 488 IIHDSPHLVTLDLSCNSLHGSIPNQ 512
           I      L  + L  N    S P  
Sbjct: 492 IFDRLTSLQKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 5e-28
 Identities = 83/449 (18%), Positives = 162/449 (36%), Gaps = 33/449 (7%)

Query: 80  TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139
            +++ L  S N++T      L     ++ L + ++ +         +L SL  LD+SDN 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF-NLSKRKTFD-SEICAETESHYN 197
           L+ ++SSS    L+S++ L L  N +    + +  LF NL+  +T     +   +E    
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPY--QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 198 SLTPKFQLTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNAN 253
                  L  + +           +         D+ +  L     +        +  ++
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSI----RDIHHLTLHLSESA-FLLEIFADILSS 197

Query: 254 LERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAF 313
           +  L L D +L    + P+   +  + +     F    +  E    L  L+   L  +  
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMK-KLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 314 NGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL 373
                  F D  +    D + ++    + E       ++  L +    L   + +    L
Sbjct: 257 ------EFDDCTLNGLGDFNPSESDV-VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW---LGNLSALEDIIMP 430
             +  + ++ +K              LE L LS+N +  E  +     G   +L+ +++ 
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 431 NNNLE--GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESI 488
            N+L            L +L  LD+S N+      SC  P  +  L+LS       +  +
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST----GIRVV 425

Query: 489 IHDSP-HLVTLDLSCNSLHGSIPNQIGRL 516
               P  L  LD+S N+L  S    + RL
Sbjct: 426 KTCIPQTLEVLDVSNNNL-DSFSLFLPRL 453

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (292), Expect = 6e-28
 Identities = 87/490 (17%), Positives = 159/490 (32%), Gaps = 59/490 (12%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGL-RQLVHLQ 59
           F    +LEHLD+ +  +   +S          SLK+L+L+ +   T+    L   L +LQ
Sbjct: 70  FYSLGSLEHLDLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 60  ELYIGGYDLRGSLP-WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRG 118
            L IG  +    +     A +TSL  L   +  L    S  L  +  +  L +  ++   
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 119 SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
            L +    L+S+R L++ D  L +   S   +   S     L+      +  S   L  L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 238
                               +    ++ F   +                 L      + +
Sbjct: 247 -----------------LRYILELSEVEFDDCT-----------------LNGLGDFNPS 272

Query: 239 LSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGT 298
            S             + RL +    LF          +K+  + V N+     +P     
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 299 YLPGLMDLNLSRNAFNGSI---PSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEI 354
           +L  L  L+LS N          +       L+ + +S N L   +    +     +L  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL--LEGLYLSDNHLTG 412
           L +S N+    +         +  L L            +  C    LE L +S+N+L  
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-----VVKTCIPQTLEVLDVSNNNLD- 444

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA-SI 471
                   L  L+++ +  N L+            L ++ +S N +       F    S+
Sbjct: 445 SFSL---FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 472 EQLHLSKNKI 481
           +++ L  N  
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (262), Expect = 4e-24
 Identities = 57/398 (14%), Positives = 136/398 (34%), Gaps = 19/398 (4%)

Query: 127 LTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS 186
             +++ LD+S N++T  I    L    +++ LIL ++    + I  +  ++L   +  D 
Sbjct: 25  TAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDL 81

Query: 187 EICAETESHYNSLTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN 245
                +    +   P   L +++L G             +  +L+   + ++    +   
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 246 WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305
                  +L  L +   SL       + S + +  L +  +     +       L  +  
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH 365
           L L          S     ++   +     + +  + +        L    L  + ++  
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE-- 257

Query: 366 IFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALE 425
                 + T       + ++          +   +  L++   +L  ++      L  ++
Sbjct: 258 ----FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 426 DIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI----FRTLPSCFSPASIEQLHLSKNKI 481
            I + N+ +          L SL+ LDLS N +     +      +  S++ L LS+N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 482 E--GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
               +   I+    +L +LD+S N+ H  +P+      
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 48/306 (15%), Positives = 99/306 (32%), Gaps = 25/306 (8%)

Query: 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291
            D    + +   P+ L    A ++ L L+ N +       + +   L  L + ++     
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351
           I  +    L  L  L+LS N  +    S F  +  L+ +++  N         +     +
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 352 LEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
           L+ L + N      I    F  LT+L  L++          +SL     +  L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEG-----------PIPIEFCQLNSLKILDLSNNSIF 459
              +  +   LS++  + + + NL               P++        + D S N + 
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 460 RTLPSCFSPASIEQLHLSKNKIEGRLESIIH--------DSPHLVTLDLSCNSLHGSIPN 511
           + L      + +E    + N +     S           ++  +  L +    L   +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 512 QIGRLP 517
               L 
Sbjct: 305 VYSLLE 310

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 44/242 (18%), Positives = 77/242 (31%), Gaps = 10/242 (4%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339
             D  +  F   IP  +      +  L+LS N               L+ + +  +++  
Sbjct: 9   VCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 340 EIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESL-SKC 397
            I         SLE L LS+N L   + S  F  L++L  L L GN +    + SL    
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 398 YLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
             L+ L + +     EI R     L++L ++ +   +L          +  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 457 SIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515
                L       +S+  L L    +     S +        +                 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 516 LP 517
           L 
Sbjct: 243 LL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 6/172 (3%)

Query: 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
           C +  +    + S    I S       + +L L  NK T      L  C  L+ L L  +
Sbjct: 4   CDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR-TLPSCFS 467
            +         +L +LE + + +N+L       F  L+SLK L+L  N      + S F 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 468 P-ASIEQLHLS-KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
              +++ L +                   L  L++   SL       +  + 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 2e-34
 Identities = 97/475 (20%), Positives = 176/475 (37%), Gaps = 63/475 (13%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
            +L         K  + D      L  +  L      ++ S+   +  + +L  +  S+N
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 78

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           +LT      L  L  + ++ ++NN +    PL  ANLT+L  L + +NQ+T      PL 
Sbjct: 79  QLTD--ITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT---DIDPLK 131

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
           +LT++  L LS+N        +  L  L+                         L  +S 
Sbjct: 132 NLTNLNRLELSSNTI----SDISALSGLTS------------------------LQQLSF 163

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
              +   T  K L +   L+  D+S   +S       +    NLE L+  +N +      
Sbjct: 164 GNQV---TDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDIT-- 215

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330
           P+     L  L ++ N  +    +     L  L DL+L+ N  +   P   + +  L  +
Sbjct: 216 PLGILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI 390
            +  NQ++   P    A   +L  L L+ N L+    S   NL NL  L L  N  +   
Sbjct: 271 KLGANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-- 323

Query: 391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
           +  +S    L+ L+  +N ++      L NL+ +  +   +N +    P+    L  +  
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQ 379

Query: 451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           L L++ +      +  +  SI     +         + I D       D++ N  
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 7e-32
 Identities = 89/442 (20%), Positives = 167/442 (37%), Gaps = 64/442 (14%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
              +            +T  +S    +L  +  L  D   ++ S+   +  L +L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINF 75

Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESH 195
           S+NQLT     +PL +LT + +++++NN        + PL NL+                
Sbjct: 76  SNNQLT---DITPLKNLTKLVDILMNNNQI----ADITPLANLTN--------------- 113

Query: 196 YNSLTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANL 254
                    LT ++L    I   T    L +  +L   +LS   +S       +    +L
Sbjct: 114 ---------LTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISDISA---LSGLTSL 158

Query: 255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN 314
           ++L   +         P+ +   L  LD+S+N       + +   L  L  L  + N  +
Sbjct: 159 QQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQIS 212

Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
              P     +  L+ + ++ NQL  +I     A   +L  L L+NN +     +    LT
Sbjct: 213 DITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISN--LAPLSGLT 265

Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
            L  L+L  N+ +   +  L+    L  L L++N L    P  + NL  L  + +  NN+
Sbjct: 266 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321

Query: 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPH 494
               P+    L  L+ L   NN +   + S  +  +I  L    N+I     + + +   
Sbjct: 322 SDISPVS--SLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISD--LTPLANLTR 376

Query: 495 LVTLDLSCNSLHGSIPNQIGRL 516
           +  L L+  +   +  N    +
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANV 398

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 2e-30
 Identities = 100/458 (21%), Positives = 164/458 (35%), Gaps = 48/458 (10%)

Query: 3   KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELY 62
                    +G+  V    S   +       +  L        +I   G+  L +L ++ 
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQTDL-----DQVTTLQADRLGIKSI--DGVEYLNNLTQIN 74

Query: 63  IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPL 122
                L    P  L N+T L  +  ++N++       L  L  +  L + NN +    PL
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPL 130

Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRK 182
              NLT+L  L++S N ++     S L  LTS+++L   N         L+PL NL+  +
Sbjct: 131 --KNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLE 180

Query: 183 TFD-SEICAETESHYNSLTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLS 240
             D S       S    LT    L  +  +   I   T    L    +L    L+   L 
Sbjct: 181 RLDISSNKVSDISVLAKLT---NLESLIATNNQISDITPLGIL---TNLDELSLNGNQLK 234

Query: 241 GKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYL 300
                  + +  NL  L LA+N +  S   P+    KL  L +  N      P+     L
Sbjct: 235 -DIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISNISPLA---GL 286

Query: 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
             L +L L+ N      P   +++K L  + + +N ++   P    +    L+ L   NN
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN 341

Query: 361 SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
            +     S   NLTN+  L    N+ +   L  L+    +  L L+D   T     +  N
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
           +S    +      L    P       S    D++ N  
Sbjct: 398 VSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 6e-17
 Identities = 68/340 (20%), Positives = 134/340 (39%), Gaps = 37/340 (10%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
            +   NL  L++    +   ++          SL+ LS  N   +      L  L  L+ 
Sbjct: 130 LKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFGNQVTDLK---PLANLTTLER 181

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
           L I    +       LA +T+L+ L A++N+++      L  L  + EL ++ N L+   
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG 237

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSK 180
            L  A+LT+L  LD+++NQ++   + +PL  LT + EL L  N       ++ PL  L+ 
Sbjct: 238 TL--ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI----SNISPLAGLTA 288

Query: 181 RKTFDSEICAETESHYNSLTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNL 239
               +       +   + ++    LT+++L    I   +    +     L+     +  +
Sbjct: 289 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKV 343

Query: 240 SGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY 299
           S       + N  N+  L    N +  S   P+ +  ++  L +++             Y
Sbjct: 344 SDVSS---LANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLNDQ----AWTNAPVNY 394

Query: 300 LPGLMDLNLSRNAFNGSI-PSSFADMKMLERVDISYNQLT 338
              +   N  +N     I P++ +D       DI++N  +
Sbjct: 395 KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 13/144 (9%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQ 59
               KNL +L +    +   +        S   L+ L       N + D   L  L ++ 
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPV-----SSLTKLQRLFF---YNNKVSDVSSLANLTNIN 356

Query: 60  ELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS 119
            L  G   +    P  LAN+T +  L  +    T         + +   +      L   
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--I 412

Query: 120 LPLCLANLTSLRVLDVSDNQLTQN 143
            P  +++  S    D++ N  +  
Sbjct: 413 APATISDGGSYTEPDITWNLPSYT 436

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 2e-32
 Identities = 76/425 (17%), Positives = 145/425 (34%), Gaps = 81/425 (19%)

Query: 34  LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
              L+ + +  N I       L       +    +   +      + S+  L  +  ++ 
Sbjct: 2   AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 94  GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLT 153
                G+  L  +  L+++ N +    PL  +NL  L  L +  N++T     S L +LT
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKIT---DISALQNLT 110

Query: 154 SIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGY 213
           ++ EL L+ ++       + PL NL+K                                 
Sbjct: 111 NLRELYLNEDNI----SDISPLANLTK--------------------------------- 133

Query: 214 IDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH 273
                          + + +L   +         + N   L  L + ++ +      PI 
Sbjct: 134 ---------------MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIA 174

Query: 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS 333
           +   L +L ++ N      P+     L  L       N      P   A+M  L  + I 
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 334 YNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILES 393
            N++T   P    A    L  L +  N +     +   +LT L  L +  N+ +   +  
Sbjct: 230 NNKITDLSPL---ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISV 282

Query: 394 LSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453
           L+    L  L+L++N L  E    +G L+ L  + +  N++    P+    L+ +   D 
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADF 340

Query: 454 SNNSI 458
           +N  I
Sbjct: 341 ANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (291), Expect = 8e-29
 Identities = 69/387 (17%), Positives = 136/387 (35%), Gaps = 76/387 (19%)

Query: 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKT 183
            A+L       +    +T          L SI +L+++         S++ +  L+    
Sbjct: 18  DADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKV----ASIQGIEYLTN--- 67

Query: 184 FDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF 243
                                                        L+  +L+   ++   
Sbjct: 68  ---------------------------------------------LEYLNLNGNQITDIS 82

Query: 244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGL 303
           P   + N   L  L +  N +  +    + +   L  L ++ +      P+     L  +
Sbjct: 83  P---LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA---NLTKM 134

Query: 304 MDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
             LNL  N  N S  S  ++M  L  + ++ +++    P    A    L  L+L+ N ++
Sbjct: 135 YSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIE 190

Query: 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSA 423
               S   +LT+L       N+ T   +  ++    L  L + +N +T   P  L NLS 
Sbjct: 191 D--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 424 LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG 483
           L  + +  N +     ++   L  LK+L++ +N I   +    + + +  L L+ N++  
Sbjct: 245 LTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGN 301

Query: 484 RLESIIHDSPHLVTLDLSCNSLHGSIP 510
               +I    +L TL LS N +    P
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
             L +L +     N I D   ++ L  L+ L +G   +       L N++ L  L+ ++N
Sbjct: 243 SQLTWLEI---GTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNN 297

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ 142
           +L       +  L  +  L +  N +    PL  A+L+ +   D ++  + +
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIKK 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 3e-26
 Identities = 61/446 (13%), Positives = 130/446 (29%), Gaps = 61/446 (13%)

Query: 71  SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
           ++     N    ++   + + L   ++        ++EL +  N L       LA  T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF--FQSPISLEPLFNLSKRKTFDSEI 188
            +L++S N L     +  L  L+++  L L+NN+        S+E L + +         
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQELLVGPSIETL-HAA--------- 107

Query: 189 CAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLV 248
                   N+++             +               KN  L++  ++    +   
Sbjct: 108 -------NNNIS------------RVSCSRGQG-------KKNIYLANNKIT-MLRDLDE 140

Query: 249 ENNANLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM 304
              + ++ L L  N +    F        S   L  L++  NF      V+       L 
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYD---VKGQVVFAKLK 194

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG 364
            L+LS N     +   F     +  + +  N+L   I + +     +LE   L  N    
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFH- 250

Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
                 F   N     +          ++  +C +    +            +   L AL
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 425 E----DIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKN 479
           +     ++    +    +  E       + +D         +        +   L   K 
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 480 KIEGRLESIIHDSPHLVTLDLSCNSL 505
            ++ ++ +       L          
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 37/308 (12%), Positives = 84/308 (27%), Gaps = 7/308 (2%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
                +  ++++ N I      +    + +Y+    +           + +Q L    NE
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 92  LTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           +   N +        +  L++  N +   +         L+ LD+S N+L   +      
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPE-FQ 211

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
               +  + L NN       +L    NL       +     T   + S   + Q      
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
              + G    +                +L   F + L+        LL    S       
Sbjct: 272 VKKLTGQNE-EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330
              +  +   +D     +R  +  ++       + L   + A +  + +       L+  
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 331 DISYNQLT 338
                   
Sbjct: 390 LQQAVGQI 397

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 5e-26
 Identities = 79/410 (19%), Positives = 136/410 (33%), Gaps = 83/410 (20%)

Query: 103 LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162
             +  ++HID              L + +++   ++ +   + ++ L     +E L L++
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 78

Query: 163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKF 222
                                                              ID   F   
Sbjct: 79  LQI----------------------------------------------EEIDTYAFA-- 90

Query: 223 LYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKL 278
             + H ++   +    +    P  + +N   L  L+L  N L     G F    H+  KL
Sbjct: 91  --YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIF----HNTPKL 143

Query: 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLT 338
            TL +SNN     I  +       L +L LS N     +    + +  L   ++SYN L+
Sbjct: 144 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY 398
             +         ++E L  S+NS+   +         L  L+L  N  T      L    
Sbjct: 200 -TLAI-----PIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--TAWLLNYP 248

Query: 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
            L  + LS N L   +      +  LE + + NN L   + +    + +LK+LDLS+N +
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307

Query: 459 FRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDS--PHLVTLDLSCNSLH 506
                +      +E L+L  N I       +  S    L  L LS N   
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 3e-24
 Identities = 77/405 (19%), Positives = 146/405 (36%), Gaps = 68/405 (16%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
               + +   +++         L + + +      +R      L +   +++L  +  ++
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 93  TGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
              I          +++L++  N +R   P    N+  L VL +  N L+  +      +
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHN 139

Query: 152 LTSIEELILSNNH-------FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQ 204
              +  L +SNN+        FQ+  SL+ L  LS                 N LT    
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLS----------------SNRLT---- 178

Query: 205 LTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
                   ++D    P        L +A++S+  LS       +     +E L  + NS+
Sbjct: 179 --------HVDLSLIPS-------LFHANVSYNLLS------TLAIPIAVEELDASHNSI 217

Query: 265 FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 324
                +    + +L  L + +N         +    PGL++++LS N     +   F  M
Sbjct: 218 NV---VRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 325 KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN 384
           + LER+ IS N+L   +         +L++L LS+N L  H+   +     L  L LD N
Sbjct: 272 QRLERLYISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 385 KFTGEILESLSKCYLLEGLYLSDNHLTG----EIPRWLGNLSALE 425
                 L +      L+ L LS N         + R +   +  +
Sbjct: 329 SIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 20/213 (9%)

Query: 299 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358
           Y     D+++     +         +   + V    + +  ++P  +      +E+L L+
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 359 NN---SLQGHIFSEKFNLTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTG 412
           +     +  + F+       +  L +  N        + +++     L  L L  N L+ 
Sbjct: 78  DLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPL---LTVLVLERNDLSS 131

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIE 472
                  N   L  + M NNNLE      F    SL+ L LS+N +     S     S+ 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP--SLF 189

Query: 473 QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
             ++S N +     S +     +  LD S NS+
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
           F+   +L++L +       +     +     PSL   ++   S N +    L   + ++E
Sbjct: 161 FQATTSLQNLQLS------SNRLTHVDLSLIPSLFHANV---SYNLL--STLAIPIAVEE 209

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
           L      +   +         L +L    N LT   +  L     + E+ +  N+L   +
Sbjct: 210 LDASHNSIN-VVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 264

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
                 +  L  L +S+N+L     +     + +++ L LS+NH      +      L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 414 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIE 472
           I   L       D+ +     +     E   LN+ KI+   N+++ +   +       +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 473 QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
            L+L+  +IE         +  +  L +  N++   +P  +
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (274), Expect = 9e-26
 Identities = 81/476 (17%), Positives = 156/476 (32%), Gaps = 42/476 (8%)

Query: 57  HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNND 115
               L I    +       + +++ L++L  S N +   +   + +    +  L + +N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 116 LRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPL 175
           L   +        +L+ LD+S N            +++ ++ L LS  H      S+ P+
Sbjct: 81  LV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL--EKSSVLPI 135

Query: 176 FNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLS 235
            +L+  K        ET                SL           F+        A+L 
Sbjct: 136 AHLNISKVLLV--LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 236 HLNLSG---------------KFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLAT 280
             N+                 K       +N  L  +    NS      +  H+   +  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT--VWY 251

Query: 281 LDVSNNFFRGHIPVE----IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
             +SN   +G +        GT L  L    +  + F       +     +   + + + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT-----GEIL 391
               +     ++      L  SNN L   +F    +LT L TL L  N+        E+ 
Sbjct: 312 TR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 392 ESLSKCYLLEGLYLSDNHLT-GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
             +     L+ L +S N ++  E         +L  + M +N L     I  C    +K+
Sbjct: 371 TQMKS---LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--TDTIFRCLPPRIKV 425

Query: 451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506
           LDL +N I           ++++L+++ N+++   + I      L  + L  N   
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 70/459 (15%), Positives = 138/459 (30%), Gaps = 69/459 (15%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
                NL+HLD+                                                
Sbjct: 86  CHPTVNLKHLDLSFNA-----------------------------------------FDA 104

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
           L I              NM+ L+ L  S+  L  +    +  L + + L +         
Sbjct: 105 LPICKE---------FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPL-MHLTSIEELILSNNHFFQSPISLEPLFNLS 179
                 L       +     T       L + + ++  L LSN              ++ 
Sbjct: 156 D--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 180 KRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 239
            +    +   +    +    T    +  + L  +     F   + +       D    + 
Sbjct: 214 AKLQT-NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS--ISNVKLQGQLDFRDFDY 270

Query: 240 SGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY 299
           SG     L  +    +      + ++  F     S+  +    VS       + +   + 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIF-----SNMNIKNFTVSGTRM---VHMLCPSK 322

Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALS 358
           +   + L+ S N    ++  +   +  LE + +  NQL        M  +  SL+ L +S
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 359 NNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW 417
            NS+             +L++L +  N  T  I   L     ++ L L  N +   IP+ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQ 439

Query: 418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
           +  L AL+++ + +N L+      F +L SL+ + L  N
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 37/265 (13%)

Query: 54  QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
               +  + + G        +   ++ +L +    S+      S        M   +   
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
           +  R    LC + ++    LD S+N LT +       HLT +E LIL  N   +     E
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
               +   +  D           N       +++    G                L + +
Sbjct: 369 MTTQMKSLQQLD--------ISQN------SVSYDEKKGDCSWTK---------SLLSLN 405

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFR 289
           +S   L+      L      ++ L L  N +         +       L  L+V++N  +
Sbjct: 406 MSSNILTDTIFRCLPP---RIKVLDLHSNKIKSIPKQVVKLE-----ALQELNVASNQLK 457

Query: 290 GHIPVEIGTYLPGLMDLNLSRNAFN 314
             +P  I   L  L  + L  N ++
Sbjct: 458 -SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
              L +S N+++      + +LS L  +I+ +N ++      F     L+ LDLS+N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81

Query: 460 RTLPSCFSPASIEQLHLSKNKIEG-RLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
             +  C    +++ L LS N  +   +     +   L  L LS   L  S    I  L 
Sbjct: 82  VKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 8/148 (5%)

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433
                L +  N  +      +     L  L +S N +             LE + + +N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC--FSP-ASIEQLHLSKNKI-EGRLESII 489
           L     I      +LK LDLS N+ F  LP C  F   + ++ L LS   + +  +  I 
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 490 HDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           H +   V L L         P  +    
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFN 164

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 1e-25
 Identities = 52/325 (16%), Positives = 104/325 (32%), Gaps = 25/325 (7%)

Query: 205 LTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
              +   G      +   L       NAD +  + + +  N       N  ++       
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRA 67

Query: 265 FGSFWMPIH--SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 322
             +    +   +      L++ +       P +    L  L  + +        +P +  
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSL---------QGHIFSEKFNL 373
               LE + ++ N L   +P  +A     L  L++                    E   L
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433
            NL +L+L+       +  S++    L+ L + ++ L+  +   + +L  LE++ +    
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240

Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDS 492
                P  F     LK L L + S   TLP        +E+L L       RL S+I   
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRLP 517
           P    + +  +       ++    P
Sbjct: 301 PANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 52/323 (16%), Positives = 97/323 (30%), Gaps = 30/323 (9%)

Query: 149 LMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
             H +  E L    +   +    +  L    +    D           NS         I
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDV--LSQWQRHYNADRNRWHSAWRQANS-----NNPQI 60

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG----KFPNWLVENNANLERLLLADNSL 264
                         L    D        L L      +FP+      ++L+ + +    L
Sbjct: 61  ETRTGRALKATADLL---EDATQPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGL 116

Query: 265 FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA-- 322
                  +     L TL ++ N  R  +P  I   L  L +L++        +P   A  
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLAST 173

Query: 323 -------DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTN 375
                   +  L+ + + +  +   +P  +A    +L+ L + N+ L   +     +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 376 LMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435
           L  L L G                L+ L L D      +P  +  L+ LE + +      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 436 GPIPIEFCQLNSLKILDLSNNSI 458
             +P    QL +  I+ +  +  
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 4e-16
 Identities = 50/393 (12%), Positives = 98/393 (24%), Gaps = 79/393 (20%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
             + L    S+        L Q           +       W  AN  + Q+   +   L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68

Query: 93  TGNI-SPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
                            L + +  L    P     L+ L+ + +    L + +  + +  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDT-MQQ 125

Query: 152 LTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS 211
              +E L L+ N                  +   + I                L      
Sbjct: 126 FAGLETLTLARNPL----------------RALPASIA--------------SLN----- 150

Query: 212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP 271
                            L+   +       + P  L   +A+ E   L            
Sbjct: 151 ----------------RLRELSIRACPELTELPEPLASTDASGEHQGL------------ 182

Query: 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331
                 L +L +     R  +P  I   L  L  L +  +  + ++  +   +  LE +D
Sbjct: 183 ----VNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL 391
           +         P         L+ L L + S    +  +   LT L  L L G      + 
Sbjct: 236 LRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 392 ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
             +++      + +  +              A 
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (263), Expect = 2e-24
 Identities = 69/310 (22%), Positives = 114/310 (36%), Gaps = 41/310 (13%)

Query: 231 NADLSHLNLSG----KFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKLATLD 282
             +   L+L              +  +LE L L +N +     G+F    ++   L TL 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLG 86

Query: 283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
           + +N  +  IP+ + T L  L  L++S N     +   F D+  L+ +++  N L   I 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLE 401
            R  +   SLE L L   +L   I +E   +L  L+ L+L           S  + Y L+
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI--- 458
            L +S       +         L  + + + NL     +    L  L+ L+LS N I   
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 459 ----FRTLPS------------CFSPA------SIEQLHLSKNKIEGRLESIIHDSPHLV 496
                  L                 P        +  L++S N++    ES+ H   +L 
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323

Query: 497 TLDLSCNSLH 506
           TL L  N L 
Sbjct: 324 TLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (263), Expect = 2e-24
 Identities = 69/418 (16%), Positives = 131/418 (31%), Gaps = 90/418 (21%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
           R L +  N ++       A+   L  L++++N ++  +      +L ++  L L +N   
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN--- 90

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
                                                +L        I  G F       
Sbjct: 91  -------------------------------------RLK------LIPLGVF------- 100

Query: 227 HDLKNADLSHLNLSG----KFPNWLVENNANLERLLLADNSLF----GSFWMPIHSHQKL 278
             L N  L+ L++S        +++ ++  NL+ L + DN L      +F         L
Sbjct: 101 TGLSN--LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS----GLNSL 154

Query: 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLT 338
             L +        IP E  ++L GL+ L L     N     SF  +  L+ ++IS+    
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKC 397
             +         +L  L++++ +L   +      +L  L  L L  N  +      L + 
Sbjct: 214 DTMTPN-CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 398 YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
             L+ + L    L    P     L+ L  + +  N L       F  + +L+ L L +N 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 458 I------------------FRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVT 497
           +                   R  P+C +P  ++                      +  
Sbjct: 332 LACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRD 389

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 5e-24
 Identities = 75/359 (20%), Positives = 124/359 (34%), Gaps = 62/359 (17%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
              + L L  +   T+         HL+EL +    +    P    N+ +L+ L   SN 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 92  LTGNISPGLCE-LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           L   I  G+   L  + +L I  N +   L     +L +L+ L+V DN L   IS     
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
            L S+E+L L                                            LT I  
Sbjct: 150 GLNSLEQLTLEKC----------------------------------------NLTSIP- 168

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
                     + L H H L    L HLN++    ++  +    L+ L ++      +   
Sbjct: 169 ---------TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330
                  L +L +++      +P     +L  L  LNLS N  +    S   ++  L+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDGNKF 386
            +   QL   +          L +L +S N   +L+  +F    ++ NL TL LD N  
Sbjct: 278 QLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 1e-23
 Identities = 51/286 (17%), Positives = 95/286 (33%), Gaps = 15/286 (5%)

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
               +             P  +         L L  N +         S   L  L+++ 
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N     +       L  L  L L  N         F  +  L ++DIS N++   + + M
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

Query: 346 AARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEG 402
               ++L+ L + +N    +    FS    L +L  L L+    T    E+LS  + L  
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
           L L   ++          L  L+ + + +      +        +L  L +++ ++   +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAV 239

Query: 463 PSC-FSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506
           P         +  L+LS N I     S++H+   L  + L    L 
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 3e-24
 Identities = 81/417 (19%), Positives = 138/417 (33%), Gaps = 83/417 (19%)

Query: 96  ISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI 155
           I   L    +  ++HID              L + +++   ++ +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 156 EELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYID 215
           E L L++                                                   ID
Sbjct: 78  ELLNLNDLQI----------------------------------------------EEID 91

Query: 216 GGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FGSFWMP 271
              F     + H ++   +    +    P  + +N   L  L+L  N L     G F   
Sbjct: 92  TYAFA----YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--- 143

Query: 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331
            H+  KL TL +SNN     I  +       L +L LS N     +    + +  L   +
Sbjct: 144 -HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHAN 198

Query: 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL 391
           +SYN L+  +         ++E L  S+NS+   +         L  L+L  N  T    
Sbjct: 199 VSYNLLS-TLAI-----PIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--T 247

Query: 392 ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451
             L     L  + LS N L   +      +  LE + + NN L   + +    + +LK+L
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306

Query: 452 DLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDS--PHLVTLDLSCNSLH 506
           DLS+N +     +      +E L+L  N I       +  S    L  L LS N   
Sbjct: 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 5e-22
 Identities = 71/459 (15%), Positives = 147/459 (32%), Gaps = 56/459 (12%)

Query: 48  LDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPG-LCELVLM 106
           +D  L+      +++I          +    + + +++   ++ +   +    L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
             L++++  +        A   +++ L +  N +   +      ++  +  L+L  N   
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL- 135

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
            S +      N  K  T             N+L              I+  TF       
Sbjct: 136 -SSLPRGIFHNTPKLTTLS--------MSNNNLE------------RIEDDTF----QAT 170

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
             L+N  LS   L+    + +     +L    ++ N L       +     +  LD S+N
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLL-----STLAIPIAVEELDASHN 221

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA 346
                +   +      L  L L  N    +  +   +   L  VD+SYN+L  +I     
Sbjct: 222 SIN-VVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPF 274

Query: 347 ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
            +   LE L +SNN L   +      +  L  L L  N     +  +  +   LE LYL 
Sbjct: 275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

Query: 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNN-----SIFR 460
            N +   +   L     L+++ + +N+ +   +   F  +    + D   +      +  
Sbjct: 333 HNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLD 499
            L    S        L    +   +E +          D
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATD 428

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 87/473 (18%), Positives = 162/473 (34%), Gaps = 87/473 (18%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
             ++ L+L +     I          +Q+LY+G   +R   P    N+  L VL    N+
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 92  LTGNISPGL-CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           L+ ++  G+      +  L + NN+L           TSL+ L +S N+LT       L 
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLS 189

Query: 151 HLTSIEELILSNNHF--FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
            + S+    +S N       PI++E L + S                +NS+         
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEEL-DAS----------------HNSIN-------- 224

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVE-----NNANLERLLLADNS 263
                + G    +            L+ L L     N L +     N   L  + L+ N 
Sbjct: 225 ----VVRGPVNVE------------LTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNE 265

Query: 264 L----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 319
           L    +  F       Q+L  L +SNN     + +     +P L  L+LS N     +  
Sbjct: 266 LEKIMYHPF----VKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVER 318

Query: 320 SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379
           +      LE + + +N +   +     +   +L+ L LS+N       S +    N+   
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDC--NSLRALFRNVARP 372

Query: 380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP 439
            +D         +     Y LE            + R L  + AL  ++      +G   
Sbjct: 373 AVDDAD------QHCKIDYQLEHGLCCKESDKPYLDRLLQYI-ALTSVVEKVQRAQGRCS 425

Query: 440 IEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDS 492
                 +++  +   ++ I +           EQL    N++   ++ + ++ 
Sbjct: 426 ----ATDTINSVQSLSHYITQQGGVPLQ--GNEQLEAEVNELRAEVQQLTNEQ 472

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
           F+   +L++L +       +     +     PSL   ++   S N +    L   + ++E
Sbjct: 167 FQATTSLQNLQLS------SNRLTHVDLSLIPSLFHANV---SYNLL--STLAIPIAVEE 215

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
           L      +   +         L +L    N LT   +  L     + E+ +  N+L   +
Sbjct: 216 LDASHNSIN-VVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
                 +  L  L +S+N+L     +     + +++ L LS+NH      +      L
Sbjct: 271 YHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASI 471
            I   L       D+ +     +     E   LN+ KI+   N+++ +   +       +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           E L+L+  +IE         +  +  L +  N++
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (260), Expect = 5e-24
 Identities = 87/483 (18%), Positives = 152/483 (31%), Gaps = 93/483 (19%)

Query: 54  QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
               LQE      +L   +P    N+ S    Y + +E   N  PG  E   M    + +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
                              L++++  L+  +          +E L+ S N   + P   +
Sbjct: 68  C-----------LDRQAHELELNNLGLSS-LPEL----PPHLESLVASCNSLTELPELPQ 111

Query: 174 PLFNLSKRKTFDSEICAETES------HYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH 227
            L +L         +              N L                    P+      
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-----------------KLPELQNSSF 154

Query: 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNF 287
            LK  D+ + +L  K P+       +LE +   +N L       + +   L  +   NN 
Sbjct: 155 -LKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS 206

Query: 288 FRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAA 347
            +  +P    +    L  +    N           ++  L  +    N L   +P+    
Sbjct: 207 LK-KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP- 257

Query: 348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL-------- 399
              SLE L + +N L   +     +LT L   +   +  + E+  +L             
Sbjct: 258 ---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSL 312

Query: 400 ------LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453
                 LE L +S+N L  E+P     L  L   I   N+L   +P       +LK L +
Sbjct: 313 CDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPEL---PQNLKQLHV 364

Query: 454 SNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
             N + R  P    P S+E L ++ +     L  +     +L  L +  N L    P+  
Sbjct: 365 EYNPL-REFPD--IPESVEDLRMNSH-----LAEVPELPQNLKQLHVETNPLR-EFPDIP 415

Query: 514 GRL 516
             +
Sbjct: 416 ESV 418

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 5e-23
 Identities = 97/502 (19%), Positives = 159/502 (31%), Gaps = 99/502 (19%)

Query: 39  LINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLAN-------------MTSLQVL 85
           L +SS  T +      +    E Y    +   + P                        L
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 86  YASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNIS 145
             ++  L+ ++      L     L    N L   LP    +L SL V + +   L+    
Sbjct: 77  ELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 146 SSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLT--PKF 203
                    +E L +SNN        L  L N S  K  D           NSL   P  
Sbjct: 132 L--------LEYLGVSNNQL----EKLPELQNSSFLKIIDV--------DNNSLKKLPDL 171

Query: 204 --QLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLA 260
              L FI+     +        L +   L      + +L  K P+  +    +LE ++  
Sbjct: 172 PPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNNSLK-KLPDLPL----SLESIVAG 223

Query: 261 DNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 320
           +N L       + +   L T+   NN  +  +P         L  LN+  N     +P  
Sbjct: 224 NNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLT-DLPEL 275

Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQ 380
              +  L+  +  ++ L+   P        +L  L  S+N ++  +        +L  L 
Sbjct: 276 PQSLTFLDVSENIFSGLSELPP--------NLYYLNASSNEIR-SLCDL---PPSLEELN 323

Query: 381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI 440
           +  NK   E+     +   LE L  S NHL  E+P    NL  L    +  N L    P 
Sbjct: 324 VSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQLH---VEYNPLRE-FPD 374

Query: 441 EFCQL----------------NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
               +                 +LK L +  N + R  P    P S+E L ++  ++   
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL-REFPD--IPESVEDLRMNSERVVDP 431

Query: 485 LESIIHDSPHLVTLDLSCNSLH 506
            E     +  L       +  H
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 89/433 (20%), Positives = 146/433 (33%), Gaps = 88/433 (20%)

Query: 96  ISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHL--- 152
           I+P       ++E    +++L   +P+   N+ S      + ++  +N            
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 153 ---------TSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF 203
                        EL L+N      P     L +L               +  NSLT   
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLV--------------ASCNSLT--- 104

Query: 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNS 263
                           P+       L   + +   LS   P         LE L +++N 
Sbjct: 105 --------------ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQ 142

Query: 264 LFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 323
           L       + +   L  +DV NN  +  +P    +    L  +    N           +
Sbjct: 143 L--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQL--EELPELQN 193

Query: 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG 383
           +  L  +    N L  ++P+       SLE +   NN L      E  NL  L T+  D 
Sbjct: 194 LPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246

Query: 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
           N     + +       LE L + DN+LT ++P    +L+ L+      + L    P    
Sbjct: 247 NLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP---- 297

Query: 444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
              +L  L+ S+N I R+L     P S+E+L++S NK    L  +    P L  L  S N
Sbjct: 298 ---NLYYLNASSNEI-RSLCD--LPPSLEELNVSNNK----LIELPALPPRLERLIASFN 347

Query: 504 SLHGSIPNQIGRL 516
            L   +P     L
Sbjct: 348 HLA-EVPELPQNL 359

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 73/381 (19%), Positives = 134/381 (35%), Gaps = 59/381 (15%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
           P L++L + N+    + +  L+    L+ + +    L+  LP       SL+ + A +N+
Sbjct: 131 PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQ 184

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           L     P L  L  +  ++ DNN L+  LP    +L S+      +N L        L +
Sbjct: 185 LE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE---ELPELQN 235

Query: 152 LTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF-QLTFISL 210
           L  +  +   NN     P     L  L+ R           +++   L      LTF+ +
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPSLEALNVR-----------DNYLTDLPELPQSLTFLDV 284

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
           S         +   +        L +LN S      L +   +LE L +++N L     +
Sbjct: 285 S-ENIFSGLSELPPN--------LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE---L 332

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330
           P     +L  L  S N     +P         L  L++  N      P     ++ L   
Sbjct: 333 P-ALPPRLERLIASFNHLA-EVPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLR-- 383

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI 390
               + L  E+PE       +L+ L +  N L+        ++ +L   +++  +     
Sbjct: 384 --MNSHLA-EVPELPQ----NLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPY 432

Query: 391 LESLSKCYLLEGLYLSDNHLT 411
             +      LE      +H  
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 8e-24
 Identities = 45/240 (18%), Positives = 90/240 (37%), Gaps = 23/240 (9%)

Query: 295 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEI 354
           EI           ++ ++   ++ S       ++ +D+S N L+ +I     A    LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYL-------------- 399
           L LS+N L      +  +L+ L TL L+ N      +  S+   +               
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 400 -LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNS 457
             + +YL++N +T       G  S ++ + +  N ++           ++L+ L+L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 458 IFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           I   +      A ++ L LS NK+   +      +  +  + L  N L   I   +    
Sbjct: 181 I-YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 56/340 (16%), Positives = 102/340 (30%), Gaps = 68/340 (20%)

Query: 119 SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
           ++     N    ++  V+D+ L Q   +S      +++EL LS N               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGN--------------- 44

Query: 179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLN 238
                                     L+ IS             L     L+  +LS   
Sbjct: 45  -------------------------PLSQIS----------AADLAPFTKLELLNLSSNV 69

Query: 239 LSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGT 298
           L        +E+ + L  L L +N +       +     + TL  +NN     +      
Sbjct: 70  LYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 299 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358
              G  ++ L+ N               ++ +D+  N++       +AA   +LE L L 
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWL 418
            N +       +     L TL L  NK    +         +  + L +N L   I + L
Sbjct: 178 YNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 419 GNLSALEDIIMPNNNLE-GPIPIEFCQLNSLKILDLSNNS 457
                LE   +  N    G +   F +   ++ +      
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 5e-21
 Identities = 46/292 (15%), Positives = 91/292 (31%), Gaps = 31/292 (10%)

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
           + +N    +   + D+SL  +      S   +  LD+S N     I          L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLT------------------GEIPERMAAR 348
           NLS N            +  L  +D++ N +                     +       
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ- 120

Query: 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSD 407
               + + L+NN +      ++   + +  L L  N+       E  +    LE L L  
Sbjct: 121 --GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467
           N +  ++   +   + L+ + + +N L   +  EF     +  + L NN +   +     
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALR 234

Query: 468 P-ASIEQLHLSKNKIE-GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
              ++E   L  N    G L      +  + T+             +   +P
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 58/344 (16%), Positives = 111/344 (32%), Gaps = 47/344 (13%)

Query: 78  NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD 137
           N    ++   + + L   ++        ++EL +  N L       LA  T L +L++S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 138 NQLTQNISSSPLMHLTSIEELILSNNHF--FQSPISLEPLFNLSKRKTFDSEICAETESH 195
           N L     +  L  L+++  L L+NN+        S+E L + +                
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQELLVGPSIETL-HAA---------------- 107

Query: 196 YNSLT----PKFQ-LTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
            N+++     + Q    I L+      +              ++  DL    +       
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAE 163

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
           L  ++  LE L L  N +            KL TLD+S+N     +  E      G+  +
Sbjct: 164 LAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWI 219

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
           +L  N     I  +    + LE  D+  N           ++   ++ +A          
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
             E+  +  L         +     E L   +    + L  +H 
Sbjct: 279 NEEECTVPTLG-------HYGAYCCEDLPAPFADRLIALGHHHH 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 18/232 (7%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339
            LD+ NN     I       L  L  L L  N  +   P +FA +  LER+ +S NQL  
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 340 EIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILES--L 394
           E+PE+M     +L+ L +  N    ++  +F+    L  ++ ++L  N      +E+   
Sbjct: 114 ELPEKMPK---TLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAF 167

Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLS 454
                L  + ++D ++T  IP+  G   +L ++ +  N +          LN+L  L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 455 NNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
            NSI        +    + +LHL+ NK+  ++   + D  ++  + L  N++
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 57/265 (21%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 253 NLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308
           NL  L+L +N +     G+F        KL  L +S N  +  +P ++      L +L +
Sbjct: 77  NLHTLILINNKISKISPGAF----APLVKLERLYLSKNQLK-ELPEKM---PKTLQELRV 128

Query: 309 SRNAFNGSIPSSFADMKMLERVDISYNQLT-GEIPERMAARCFSLEILALSNNSLQGHIF 367
             N       S F  +  +  V++  N L    I          L  + +++ ++   I 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI- 186

Query: 368 SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI 427
             +    +L  L LDGNK T     SL     L  L LS N ++      L N   L ++
Sbjct: 187 -PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 428 IMPNNNLEGPIPIEFCQLNSLKILDLSNNSI-------FRTLPSCFSPASIEQLHLSKNK 480
            + NN L   +P        ++++ L NN+I       F         AS   + L  N 
Sbjct: 246 HLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 481 IEGRL--ESIIHDSPHLVTLDLSCN 503
           ++      S          + L   
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 61/367 (16%), Positives = 110/367 (29%), Gaps = 101/367 (27%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
           P    L L N+    I D   + L +L  L +    +    P   A +  L+ LY S N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT-QNISSSPLM 150
           L   +   +     ++EL +  N++          L  + V+++  N L    I +    
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
            +  +  + +++                                          +T    
Sbjct: 169 GMKKLSYIRIADT----------------------------------------NIT---- 184

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FG 266
              I  G  P        L    L    ++ K     ++   NL +L L+ NS+     G
Sbjct: 185 --TIPQGLPPS-------LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 267 SFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 326
           S      +   L  L ++NN                     L        +P   AD K 
Sbjct: 235 SLA----NTPHLRELHLNNN--------------------KLV------KVPGGLADHKY 264

Query: 327 LERVDISYNQLTGEIPERMAARCF------SLEILALSNNSLQGH-IFSEKF-NLTNLMT 378
           ++ V +  N ++  I               S   ++L +N +Q   I    F  +     
Sbjct: 265 IQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 379 LQLDGNK 385
           +QL   K
Sbjct: 324 VQLGNYK 330

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 3e-22
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 24/240 (10%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
              L++  N  +  I  +   +L  L  L L RN+       +F  +  L  +++  N L
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 338 TGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQL-DGNKFTGEILES 393
           T  IP         L  L L NN   S+  + F+    + +LM L L +  K       +
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISEGA 191

Query: 394 LSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453
               + L+ L L   ++  ++P  L  L  LE++ M  N+     P  F  L+SLK L +
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 454 SNNSI-------FRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506
            N+ +       F  L S      + +L+L+ N +      +     +LV L L  N  +
Sbjct: 250 MNSQVSLIERNAFDGLAS------LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 9e-17
 Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 19/237 (8%)

Query: 232 ADLSHLNLSG----KFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKLATLDV 283
           ++  +LNL              +  +LE L L  NS+     G+F         L TL++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLEL 130

Query: 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS-YNQLTGEIP 342
            +N+    IP     YL  L +L L  N        +F  +  L R+D+    +L   I 
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YIS 188

Query: 343 ERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE 401
           E      F+L+ L L   +++     +    L  L  L++ GN F      S      L+
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
            L++ ++ ++         L++L ++ + +NNL       F  L  L  L L +N  
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 56/239 (23%), Positives = 88/239 (36%), Gaps = 17/239 (7%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            + ++L+L+ ++   I     R L HL+ L +G   +R         + SL  L    N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 92  LTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD-NQLTQNISSSPL 149
           LT  I  G    L  +REL + NN +          + SL  LD+ +  +L   IS    
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAF 192

Query: 150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFIS 209
             L +++ L L   +    P +L PL  L + +   +      E    S      L  + 
Sbjct: 193 EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF---PEIRPGSFHGLSSLKKLW 248

Query: 210 LSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
           +       I+   F         L   +L+H NLS   P+ L      L  L L  N  
Sbjct: 249 VMNSQVSLIERNAFD----GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
           +  +   L+ E+P+ +   S    + +  NN++      F  L+ L++L L  NSI +  
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 463 PSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
              F+  AS+  L L  N +             L  L L  N +  SIP
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIP 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 3e-22
 Identities = 79/420 (18%), Positives = 151/420 (35%), Gaps = 63/420 (15%)

Query: 56  VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNN 114
            H+  + +    +        + +  LQ L          I       L  +  L +D N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 115 DLRGSLPLCLANLTSLRVLDVSDNQLT-QNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
                       L +L VL ++   L    +S +    LTS+E L+L +N+         
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN--------- 140

Query: 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG----YIDGGTFPKF-LYHQHD 228
            +  +     F             ++    +   + L+      I       F   H   
Sbjct: 141 -IKKIQPASFFL------------NMR---RFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 229 LKNADLSHLNLSGKFPNWLVENN----ANLERLLLADN----SLFGSFWMPIHSHQKLAT 280
           L+ + ++  +++  +  W    N     ++  L L+ N    S+   F+  I +  K+ +
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQS 243

Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE 340
           L +SN++        +G+        +     F G   S       ++  D+S +++   
Sbjct: 244 LILSNSY-------NMGSSFGHTNFKDPDNFTFKGLEASG------VKTCDLSKSKIF-A 289

Query: 341 IPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFT---GEILESLSK 396
           + + + +    LE L L+ N +   I    F  LT+L+ L L  N        + E+L K
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 397 CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
              LE L LS NH+     +    L  L+++ +  N L+      F +L SL+ + L  N
Sbjct: 349 ---LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 3e-21
 Identities = 72/415 (17%), Positives = 134/415 (32%), Gaps = 49/415 (11%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSN 90
             + ++ L  +S   + +    +L  LQ L +        +       ++SL +L    N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 91  ELTGNISPGLCE-LVLMRELHIDNNDLRGSL--PLCLANLTSLRVLDVSDNQLTQNISSS 147
           +    +  G    L  +  L +   +L G++        LTSL +L + DN + +   +S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
             +++     L L+ N                  +   +           S      +  
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSIC-----------EEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
             L     G  F         +   DLS             +  A  +   L  +    +
Sbjct: 198 YWLGWEKCGNPF-----KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS----N 248

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM 326
            +    S       D  N  F+       G    G+   +LS++    ++    F+    
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFK-------GLEASGVKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDG 383
           LE++ ++ N++  +I +        L  L LS N   S+   +F    NL  L  L L  
Sbjct: 301 LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEVLDLSY 356

Query: 384 NKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNNL 434
           N       +    L     L+ L L  N L   +P      L++L+ I +  N  
Sbjct: 357 NHIRALGDQSFLGLPN---LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 66/409 (16%), Positives = 114/409 (27%), Gaps = 55/409 (13%)

Query: 106 MRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           +  + +  N +        + L  L+ L V        I ++    L+S+  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 166 FQSPIS-LEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLY 224
            Q        L NL                   +L              + G  F     
Sbjct: 92  LQLETGAFNGLANLE-----------VLTLTQCNLD----------GAVLSGNFFKPL-- 128

Query: 225 HQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVS 284
               L+   L   N+    P     N      L L  N +                    
Sbjct: 129 --TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV---------------KSICE 171

Query: 285 NNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPER 344
            +             L  +   +++          +      +  +D+S N     + +R
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 345 MAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLY 404
                   +I +L  ++      S             D   F G     +          
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFK----DPDNFTFKGLEASGVKT------CD 281

Query: 405 LSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS 464
           LS + +   +     + + LE + +  N +       F  L  L  L+LS N +  ++ S
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS 340

Query: 465 C-FSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511
             F     +E L LS N I    +      P+L  L L  N L  S+P+
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 21/237 (8%)

Query: 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
             +  ++LS N+      +SF+ ++ L+ + +        I         SL IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 361 SLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILE--SLSKCYLLEGLYLSDNHLTGEIPRW 417
                + +  F  L NL  L L      G +L          LE L L DN++    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 418 L-GNLSALEDIIMPNNNLE----------GPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466
              N+     + +  N ++                  +L+S+ + D++   +        
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 467 -SPASIEQLHLSKNKIEGRLESIIHDSPHLV-----TLDLSCNSLHGSIPNQIGRLP 517
               SI  L LS N  +  +     D+          L  S N              
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 73/448 (16%), Positives = 142/448 (31%), Gaps = 72/448 (16%)

Query: 58  LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
                   ++++ +       + +L  L   ++ +T     G+ +L  + +L   +N++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

Query: 118 GSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFN 177
            +L L     T+L  L    N+LT    +  +  LT +  L    N    + + +     
Sbjct: 78  -TLDLS--QNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKL--TKLDVSQNPL 128

Query: 178 LSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHL 237
           L+                 N       LT I +S             H   L   D    
Sbjct: 129 LT-----------YLNCARN------TLTEIDVS-------------HNTQLTELDCHLN 158

Query: 238 NLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG 297
               K     V     L  L  + N +     + +  ++ L  L+   N     + +   
Sbjct: 159 KKITKLD---VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDL--- 208

Query: 298 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357
                L  L+ S N     I      +  L   D S N LT E+     +    L  L  
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHC 261

Query: 358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW 417
               L     +   + T L+  Q +G +   E+   ++    L  L      +T E+   
Sbjct: 262 IQTDLLEIDLT---HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD-- 313

Query: 418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477
           L     L  + + N  L     ++      LK L   N  I +   S     ++     +
Sbjct: 314 LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHI-QDFSSVGKIPALNNNFEA 369

Query: 478 KNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           + +     +  + ++   +T+ +S + L
Sbjct: 370 EGQTITMPKETLTNN--SLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 72/408 (17%), Positives = 127/408 (31%), Gaps = 48/408 (11%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
                   +++ +  +    L +L  LD  ++ +T     + +  LT + +LI ++N+  
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN-- 75

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
              I+   L   +       +    T      LT   +LT+++             L   
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLTNLDVTPLT---KLTYLNCDT--------NKLTKL 121

Query: 227 HDLKNADLSHLNLSG-KFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
              +N  L++LN +        V +N  L  L    N       + +    +L TLD S 
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSF 179

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N     + V   +    L  LN   N     +         L  +D S N+LT EI    
Sbjct: 180 NKIT-ELDV---SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVT- 230

Query: 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
                 L     S N L     S    L+ L TL         EI   L+    L     
Sbjct: 231 --PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EI--DLTHNTQLIYFQA 282

Query: 406 SDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC 465
                  E+   + + + L  +      +     ++  Q   L  L L+N  +   L   
Sbjct: 283 EGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL-TELDVS 336

Query: 466 FSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
            +   ++ L      I+    S +   P L     +           +
Sbjct: 337 HNT-KLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 74/429 (17%), Positives = 129/429 (30%), Gaps = 76/429 (17%)

Query: 34  LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
           L  L+ +  + N I    L Q  +L  L      L  +L   +  +T L  L   +N+LT
Sbjct: 63  LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 94  GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLT 153
                 + +  L+  L+   N L     + +++ T L  LD   N+    I+   +   T
Sbjct: 120 ---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK---ITKLDVTPQT 170

Query: 154 SIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGY 213
            +  L  S N   +  +S             +   C               +T + L+  
Sbjct: 171 QLTTLDCSFNKITELDVS-----QNKLLNRLN---CDTN-----------NITKLDLNQ- 210

Query: 214 IDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWL----VENNANLERLLLADNSLFGSFW 269
                            N  L+ L+ S    N L    V     L     + N L     
Sbjct: 211 -----------------NIQLTFLDCSS---NKLTEIDVTPLTQLTYFDCSVNPLTE--- 247

Query: 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 329
           + + +  KL TL          I +   T+   L+                      L  
Sbjct: 248 LDVSTLSKLTTLHCIQTDLL-EIDL---THNTQLIYFQAEGC--RKIKELDVTHNTQLYL 301

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE 389
           +D     +T E+     ++   L  L L+N  L     S   + T L +L          
Sbjct: 302 LDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNAHIQD- 353

Query: 390 ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK 449
              S+ K   L   + ++          L N S    +    + L+        +     
Sbjct: 354 -FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV--SPDLLDQFGNPMNIEPGDGG 410

Query: 450 ILDLSNNSI 458
           + D + N+I
Sbjct: 411 VYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 15/134 (11%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
             L FL     S N + +  +  L  L         L   L   ++ ++ L  L+    +
Sbjct: 212 IQLTFLDC---SSNKLTEIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTD 265

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           L         +L     ++      R    L + + T L +LD     +T       L  
Sbjct: 266 LLEIDLTHNTQL-----IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT----ELDLSQ 316

Query: 152 LTSIEELILSNNHF 165
              +  L L+N   
Sbjct: 317 NPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
           N  + +    +         E L+    L  L   ++ +T ++   +  L+ L  +I  +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLAT---LTSLDCHNSSIT-DMTG-IEKLTGLTKLICTS 73

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491
           NN+     ++  Q  +L  L   +N +   L        +  L+   NK+    +  +  
Sbjct: 74  NNITT---LDLSQNTNLTYLACDSNKL-TNLDVTPLT-KLTYLNCDTNKLT---KLDVSQ 125

Query: 492 SPHLVTLDLSCNSL 505
           +P L  L+ + N+L
Sbjct: 126 NPLLTYLNCARNTL 139

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.6 bits (235), Expect = 9e-21
 Identities = 84/409 (20%), Positives = 133/409 (32%), Gaps = 102/409 (24%)

Query: 71  SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
            +  CL N     VL    + LT  +   L   +    L I +N+L  SLP   A    L
Sbjct: 33  KMRACLNN--GNAVLNVGESGLT-TLPDCLPAHI--TTLVIPDNNLT-SLP---ALPPEL 83

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA 190
           R L+VS NQLT ++       L  +        H    P  L  L  +            
Sbjct: 84  RTLEVSGNQLT-SLPVL-PPGLLELSIFSNPLTHLPALPSGLCKL-WIF----------- 129

Query: 191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVEN 250
                 N LT                 + P        L+   +S   L+   P      
Sbjct: 130 -----GNQLT-----------------SLPVLPPG---LQELSVSDNQLA-SLPALP--- 160

Query: 251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSR 310
            + L +L   +N L                           +P+       GL +L++S 
Sbjct: 161 -SELCKLWAYNNQL-------------------------TSLPMLPS----GLQELSVSD 190

Query: 311 NAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK 370
           N    S+P+  +++  L       N+LT  +P   +     L+ L +S N L   +    
Sbjct: 191 NQLA-SLPTLPSELYKLW---AYNNRLT-SLPALPS----GLKELIVSGNRLT-SLPVL- 239

Query: 371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
              + L  L + GN+ T  +    S    L  L +  N LT  +P  L +LS+   + + 
Sbjct: 240 --PSELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 431 NNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
            N L         ++ S      S   I   +    +P     LHL+  
Sbjct: 293 GNPLSERTLQALREITSAP--GYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 43/285 (15%)

Query: 234 LSHLNLSGKFPNWL-VENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
            + LN+       L     A++  L++ DN+L     +P     +L TL+VS N     +
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS---LP-ALPPELRTLEVSGNQLT-SL 96

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
           PV     L  L   +                   L ++ I  NQLT  +P         L
Sbjct: 97  PVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP----GL 143

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
           + L++S+N L     S     + L  L    N+ T  +    S    L+ L +SDN L  
Sbjct: 144 QELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA- 194

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIE 472
            +P     L  L      NN L   +P      + LK L +S N +  +LP    P+ ++
Sbjct: 195 SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRL-TSLPV--LPSELK 244

Query: 473 QLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           +L +S N    RL S+      L++L +  N L   +P  +  L 
Sbjct: 245 ELMVSGN----RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLS 284

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 56/264 (21%), Positives = 90/264 (34%), Gaps = 41/264 (15%)

Query: 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNA 312
               L + ++ L     +P      + TL + +N     +P         L  L +S N 
Sbjct: 41  GNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 313 FNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN 372
              S+P     +  L         L              L  L +  N L     S    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLPVL 139

Query: 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNN 432
              L  L +  N+    +    S+   L  L+  +N LT  +P     L  L    + +N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELS---VSDN 191

Query: 433 NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDS 492
            L   +P    +L     L   NN +  +LP+   P+ +++L +S N    RL S+    
Sbjct: 192 QLAS-LPTLPSEL---YKLWAYNNRL-TSLPA--LPSGLKELIVSGN----RLTSLPVLP 240

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRL 516
             L  L +S N L  S+P     L
Sbjct: 241 SELKELMVSGNRL-TSLPMLPSGL 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 77/401 (19%), Positives = 127/401 (31%), Gaps = 76/401 (18%)

Query: 57  HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDL 116
               L +G   L  +LP CL     +  L    N LT ++     EL   R L +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQL 93

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
             SLP+    L  L +       L            + + +L +  N     P+    L 
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSLPVLPPGLQ 144

Query: 177 NLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSH 236
            LS                 N L                  + P        L      +
Sbjct: 145 ELSVS--------------DNQLA-----------------SLPALPSE---LCKLWAYN 170

Query: 237 LNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEI 296
             L+   P       + L+ L ++DN L     +P     +L  L   NN     +P   
Sbjct: 171 NQLT-SLPMLP----SGLQELSVSDNQLAS---LP-TLPSELYKLWAYNNRLT-SLPALP 220

Query: 297 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356
                GL +L +S N    S+P   +++K L    +S N+LT  +P   +     L  L+
Sbjct: 221 S----GLKELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT-SLPMLPS----GLLSLS 267

Query: 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPR 416
           +  N L   +     +L++  T+ L+GN  +   L++L +     G              
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 417 WLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
                 AL       + L      E    +   +    +N+
Sbjct: 327 APRETRALHLAA--ADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 58/285 (20%), Positives = 101/285 (35%), Gaps = 38/285 (13%)

Query: 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291
           A ++ L +       L      L  L ++ N L  S  +      +L+            
Sbjct: 61  AHITTLVIPDNNLTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLT----- 114

Query: 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351
               +     GL  L +  N    S+P     ++ L    +S NQL   +P   +     
Sbjct: 115 ---HLPALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPS----E 162

Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
           L  L   NN L   +       + L  L +  N+    +    S+   L  L+  +N LT
Sbjct: 163 LCKLWAYNNQLT-SLPML---PSGLQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT 214

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI 471
             +P     L  L   I+  N L   +P+     + LK L +S N +  +LP    P+ +
Sbjct: 215 -SLPALPSGLKEL---IVSGNRLTS-LPVL---PSELKELMVSGNRL-TSLPM--LPSGL 263

Query: 472 EQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
             L + +N++  RL   +       T++L  N L       +  +
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNN 432
                 L +  +  T  + + L     +  L + DN+LT  +P     L  LE   +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 433 NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDS 492
            L   +P+    L  L I           LP+   P+ + +L +  N+    L S+    
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTH----LPA--LPSGLCKLWIFGNQ----LTSLPVLP 140

Query: 493 PHLVTLDLSCNSLHGSIPNQIGRL 516
           P L  L +S N L  S+P     L
Sbjct: 141 PGLQELSVSDNQL-ASLPALPSEL 163

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 21/175 (12%)

Query: 4   FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYI 63
              L+ L + + Q       L  +      L  L   N+   ++          L+EL +
Sbjct: 180 PSGLQELSVSDNQ-------LASLPTLPSELYKLWAYNNRLTSLPAL----PSGLKELIV 228

Query: 64  GGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLC 123
            G  L  SLP      + L+ L  S N LT ++      L     L +  N L   LP  
Sbjct: 229 SGNRLT-SLP---VLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPES 279

Query: 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
           L +L+S   +++  N L++  +   L  +TS          F  +  S       
Sbjct: 280 LIHLSSETTVNLEGNPLSE-RTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 431 NNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH 490
                    +  C  N   +L++  + +  TLP C  PA I  L +  N +         
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVIPDNNLTSLPALP-- 80

Query: 491 DSPHLVTLDLSCNSLHGSIPNQIGRLP 517
             P L TL++S N L  S+P     L 
Sbjct: 81  --PELRTLEVSGNQLT-SLPVLPPGLL 104

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 28/265 (10%)

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKLATL 281
            +          NL  + P+ +   + N   L L +N +      SF       + L  L
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSF----KHLRHLEIL 93

Query: 282 DVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERVDISYNQLTGE 340
            +S N  R  I +     L  L  L L  N    +IP+ +F  +  L+ + +  N +   
Sbjct: 94  QLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 341 IPERMAARCFSLEILALSNN----SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK 396
           IP     R  SL  L L        +    F     L+NL  L L         + +L+ 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNLRE--IPNLTP 205

Query: 397 CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
              L+ L LS NHL+   P     L  L+ + M  + ++      F  L SL  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 457 SIFRTLP-SCFSP-ASIEQLHLSKN 479
           ++   LP   F+P   +E++HL  N
Sbjct: 266 NL-TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 24/240 (10%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
              L++  N  +  I V    +L  L  L LSRN        +F  +  L  +++  N+L
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 338 TGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQL-DGNKFTGEILES 393
           T  IP         L+ L L NN   S+  + F+    + +L  L L +  + +     +
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEGA 180

Query: 394 LSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453
                 L  L L+  +L  EIP  L  L  L+++ +  N+L    P  F  L  L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 454 SNNSI-------FRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506
             + I       F  L S      + +++L+ N +      +     HL  + L  N  +
Sbjct: 239 IQSQIQVIERNAFDNLQS------LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 57/309 (18%), Positives = 97/309 (31%), Gaps = 87/309 (28%)

Query: 80  TSLQVLYASSNELTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
           T+ ++L    N++   I       L  +  L +  N +R         L +L  L++ DN
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 139 QLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNS 198
           +LT  I +   ++L+ ++EL L NN                                   
Sbjct: 123 RLTT-IPNGAFVYLSKLKELWLRNN----------------------------------- 146

Query: 199 LTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLL 258
                 +  I          F   +     L+  DL  L           E  +NL  L 
Sbjct: 147 -----PIESIP------SYAF-NRIPS---LRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 259 LADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 318
           LA  +L                                   L  L +L+LS N  +   P
Sbjct: 192 LAMCNL------------------REIPNLTP---------LIKLDELDLSGNHLSAIRP 224

Query: 319 SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTN 375
            SF  +  L+++ +  +Q+   I         SL  + L++N    L   +F+    L +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHH 280

Query: 376 LMTLQLDGN 384
           L  + L  N
Sbjct: 281 LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 25/243 (10%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            + + L+L  +    I     + L HL+ L +    +R         + +L  L    N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 92  LTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD-NQLTQNISSSPL 149
           LT  I  G    L  ++EL + NN +          + SLR LD+ +  +L+  IS    
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFIS 209
             L+++  L L+  +       +  L  L K    D      +     S      L  + 
Sbjct: 182 EGLSNLRYLNLAMCNL----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 210 LSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSG----KFPNWLVENNANLERLLLAD 261
           +       I+   F        +L++  L  +NL+       P+ L     +LER+ L  
Sbjct: 238 MIQSQIQVIERNAF-------DNLQS--LVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 262 NSL 264
           N  
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 403 LYLSDNHLTGEIPRWL-GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461
           +     +L  E+P  +  N   L    +  N ++      F  L  L+IL LS N I   
Sbjct: 48  VICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 462 LPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
               F+  A++  L L  N++             L  L L  N +  SIP
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIP 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 54/264 (20%), Positives = 90/264 (34%), Gaps = 25/264 (9%)

Query: 253 NLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308
           +L  L+L +N +      +F       +KL  L +S N     IP  +      L++L +
Sbjct: 79  HLYALVLVNNKISKIHEKAF----SPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRI 130

Query: 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS 368
             N         F+ ++ +  +++  N L     E  A     L  L +S   L   I  
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK 189

Query: 369 EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428
           +      L  L LD NK     LE L +   L  L L  N +       L  L  L ++ 
Sbjct: 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSI-------FRTLPSCFSPASIEQLHLSKNKI 481
           + NN L   +P     L  L+++ L  N+I       F  +      A    + L  N +
Sbjct: 248 LDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 482 EGRL--ESIIHDSPHLVTLDLSCN 503
                  +        + +     
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339
            LD+ NN     +  +    L  L  L L  N  +     +F+ ++ L+++ IS N L  
Sbjct: 58  LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115

Query: 340 EIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK 396
           EIP  + +   SL  L + +N    +   +FS    L N+  +++ GN       E  + 
Sbjct: 116 EIPPNLPS---SLVELRIHDNRIRKVPKGVFS---GLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 397 CYL-LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLS 454
             L L  L +S+  LT  IP+       L ++ + +N ++  I +E   + + L  L L 
Sbjct: 170 DGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLG 225

Query: 455 NNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           +N I        S   ++ +LHL  NK+  R+ + + D   L  + L  N++
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 51/323 (15%), Positives = 99/323 (30%), Gaps = 78/323 (24%)

Query: 76  LANMTSLQVLYASSNELTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLD 134
              +  L  L   +N+++  I       L  +++L+I  N L   +P  L   +SL  L 
Sbjct: 74  FKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELR 129

Query: 135 VSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETES 194
           + DN++ + +       L ++  + +  N    S         L                
Sbjct: 130 IHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK--------------- 173

Query: 195 HYNSLTPKFQLTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVEN 250
                     L ++ +S      I              L    L H  +        +  
Sbjct: 174 ----------LNYLRISEAKLTGIPKDLPET-------LNELHLDHNKIQ-AIELEDLLR 215

Query: 251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSR 310
            + L RL L  N +                  + N              LP L +L+L  
Sbjct: 216 YSKLYRLGLGHNQI----------------RMIENGSLSF---------LPTLRELHLDN 250

Query: 311 NAFNGSIPSSFADMKMLERVDISYNQLTGEIPE------RMAARCFSLEILALSNNSLQG 364
           N  +  +P+   D+K+L+ V +  N +T ++            +      ++L NN +  
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 365 HIFSEK--FNLTNLMTLQLDGNK 385
                     +T+ + +Q    K
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 89/457 (19%), Positives = 144/457 (31%), Gaps = 54/457 (11%)

Query: 80  TSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
              + L  S N ++  +       L  +R L + +N +R            L  LDVS N
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 139 QLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNS 198
           +L QNIS  P+  L     L LS N              L   K F +            
Sbjct: 111 RL-QNISCCPMASLR---HLDLSFN----------DFDVLPVCKEFGN------------ 144

Query: 199 LTPKFQLTFISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERL 257
           LT   +LTF+ LS             +        DL   ++ G     L   N  +  L
Sbjct: 145 LT---KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 258 LLADNSLFGSFWMPIHSHQKLATLDV--SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG 315
           +   NSLF        +      L     N+     +   +     G   LN++      
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 316 SIPS-----SFADMKMLERVDISYNQLTGEIPERMAARCF----SLEILALSNNSLQGHI 366
           +         F   + +E ++I    +T  I             SL I  + N       
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
            +       +    L  +      +           L  + N  T  + +    L  L+ 
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS------CFSPASIEQLHLSKNK 480
           +I+  N L+           ++  L+  + S+  +L S      C    SI  L+LS N 
Sbjct: 382 LILQRNGLKN-FFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 481 IEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
           + G +   +   P +  LDL  N +  SIP  +  L 
Sbjct: 440 LTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQ 473

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 85/447 (19%), Positives = 158/447 (35%), Gaps = 30/447 (6%)

Query: 52  LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI 111
           +  L  L+ L +    +R            L+ L  S N L  NIS     +  +R L +
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128

Query: 112 DNNDLRGSLPLC--LANLTSLRVLDVSDNQLTQNISSSPLMHL-TSIEELILSNNHFFQS 168
             ND    LP+C    NLT L  L +S  +  + +   P+ HL  S   L L + H    
Sbjct: 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS-GYIDGGTFPKFLYH-- 225
                 + N +            +     S+     L   ++     +      FL    
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 226 -QHDLKNADLSHLNLSGKFPNWLVEN--NANLERLLLADNSLFGSFWMPIHSHQKLAT-- 280
               L N  L H+  + K    L +      +E L + + ++         ++ + A   
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 281 ---LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
                V N  F       + +    +    LS +                  ++ + N  
Sbjct: 307 LMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 338 TGEIPERMAARCFSLEILALSNNSLQ--GHIFSEKFNLTNLMTLQLDGNKFTGEILESL- 394
           T +   +  +    L+ L L  N L+    +     N+++L TL +  N       +   
Sbjct: 366 T-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLS 454
           +    +  L LS N LTG + R L     ++ + + NN +   IP +   L +L+ L+++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVA 481

Query: 455 NNSIFRTLP-SCFSP-ASIEQLHLSKN 479
           +N + +++P   F    S++ + L  N
Sbjct: 482 SNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 77/397 (19%), Positives = 139/397 (35%), Gaps = 26/397 (6%)

Query: 55  LVHLQELYIGGYDLRGSLPWC--LANMTSLQVLYASSNELTGNISPGLCELVLM-RELHI 111
           +  L+ L +   D    LP C    N+T L  L  S+ +        +  L L    L +
Sbjct: 120 MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 112 DNNDLRGSLPLCLANL-TSLRVLDVSDNQLTQNISSSPLMHLTSIE--ELILSNNHFFQS 168
            +  ++G     L    T++  L    N L     +  +  L  ++   + L++ +  + 
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF-----ISLSGYIDGGTFPKFL 223
              L  L           +    T      L   F         I      +     +F 
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 224 YHQHDLKNADLSHL--NLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATL 281
           Y +  LK+  + H+   +       L    A +   +L+ +       +   S      L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 282 DVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF---ADMKMLERVDISYNQLT 338
           + + N F      +  + L  L  L L RN    +         +M  LE +D+S N L 
Sbjct: 359 NFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT-NLMTLQLDGNKFTGEILESLSKC 397
               +R  A   S+ +L LS+N L G +F     L   +  L L  N+    I + ++  
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNRIM-SIPKDVTHL 472

Query: 398 YLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNN 433
             L+ L ++ N L   +P      L++L+ I + +N 
Sbjct: 473 QALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 34/286 (11%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPW-----CLANMTSLQVLYA 87
           ++    +  + K ++          ++ L I    +   +           + SL + + 
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 88  SSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSS 147
            +     +          M    +  +D      +C  + +S   L+ + N  T ++   
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
               L  ++ LIL  N             N+S  +T D  +        NSL        
Sbjct: 373 C-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL--------NSLNS------ 417

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
                      + +       +   +LS   L+G     L      ++ L L +N +  S
Sbjct: 418 ---------HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP---KVKVLDLHNNRI-MS 464

Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAF 313
               +   Q L  L+V++N  +  +P  +   L  L  + L  N +
Sbjct: 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 52/233 (22%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLT- 338
            +  ++      +P  I         L L  N         F  +  L ++ +S N L+ 
Sbjct: 11  EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT----GEILESL 394
                +      SL+ L LS N +   + S    L  L  L    +         +  SL
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN-LEGPIPIEFCQLNSLKILDL 453
                L  L +S  H           LS+LE + M  N+  E  +P  F +L +L  LDL
Sbjct: 126 RN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 454 SNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           S   + +  P+ F+  +S++ L++S N               L  LD S N +
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 59/288 (20%), Positives = 96/288 (33%), Gaps = 39/288 (13%)

Query: 81  SLQVLYASSNELT---GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD 137
           S   +  +S  LT     I            L +++N L+         LT L  L +S 
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSA------TRLELESNKLQSLPHGVFDKLTQLTKLSLSS 61

Query: 138 NQLT-QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHY 196
           N L+ +   S      TS++ L LS N       +   L  L              +  +
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL-----------EHLDFQH 110

Query: 197 NSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLER 256
           ++L          +S   +   F        +L   D+SH +    F        ++LE 
Sbjct: 111 SNLK--------QMS---EFSVF----LSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEV 154

Query: 257 LLLADNSLFGSF-WMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG 315
           L +A NS   +F        + L  LD+S       +       L  L  LN+S N F  
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
                +  +  L+ +D S N +     + +     SL  L L+ N   
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 13/190 (6%)

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKF 386
             +  +   LT  +P  + +   S   L L +N LQ  +    F  LT L  L L  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIPS---SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 387 TGEILESLSKCYL--LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FC 443
           + +   S S      L+ L LS N +   +      L  LE +   ++NL+       F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 444 QLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNK-IEGRLESIIHDSPHLVTLDLS 501
            L +L  LD+S+          F+  +S+E L ++ N   E  L  I  +  +L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 502 CNSLHGSIPN 511
              L   +  
Sbjct: 184 QCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 14/240 (5%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDL--RGSLPWCLANMTSLQVLYASS 89
            S   L L ++   ++      +L  L +L +    L  +G         TSL+ L  S 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 90  NELTGNISPGLCELVLMRELHIDNNDLRGSLPLCL-ANLTSLRVLDVSDNQLTQNISSSP 148
           N +   +S     L  +  L   +++L+      +  +L +L  LD+S         +  
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 149 LMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
              L+S+E L ++ N F ++    +    L      D   C   +    +      L  +
Sbjct: 146 FNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 209 SLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
           ++S      +D   +       + L+  D S  ++       L    ++L  L L  N  
Sbjct: 205 NMSHNNFFSLDTFPY----KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 23/242 (9%)

Query: 205 LTFISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGKF-PNWLVENNANLERLLL 259
            T + L       +  G F K       L    LS   LS K   +       +L+ L L
Sbjct: 30  ATRLELESNKLQSLPHGVFDKL----TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 260 ADNSLF---GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS 316
           + N +     +F       ++L  LD  ++  +      +   L  L+ L++S      +
Sbjct: 86  SFNGVITMSSNF----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNL 373
               F  +  LE + ++ N         +     +L  L LS      L    F+   +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SL 198

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL-SALEDIIMPNN 432
           ++L  L +  N F             L+ L  S NH+     + L +  S+L  + +  N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 433 NL 434
           + 
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 17/173 (9%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESK-----PSLKFLSLINSSKNTILDQGLRQL 55
           F   + LEHLD            L+ + E        +L +L + ++      +     L
Sbjct: 97  FLGLEQLEHLDFQHSN-------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 56  VHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSNELTGNISPG-LCELVLMRELHIDN 113
             L+ L + G   + +        + +L  L  S  +L   +SP     L  ++ L++ +
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHL-TSIEELILSNNHF 165
           N+           L SL+VLD S N +        L H  +S+  L L+ N F
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 5e-19
 Identities = 53/278 (19%), Positives = 89/278 (32%), Gaps = 20/278 (7%)

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQ-KLATLDVSNNFFRGHIPVEIGTYL--PGL 303
           L     +LE LL   ++               L  L V        I       L   GL
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 304 MDLNLSRNAFNGSIPSSFADMKM--LERVDISYNQLTG---EIPERMAARCFSLEILALS 358
            +L L      G+ P    +     L  +++           + E        L++L+++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL----LEGLYLSDNHLT--- 411
                     +      L TL L  N   GE     + C L    L+ L L +  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-LNSLKILDLSNNSIFRTLPSCFSPAS 470
           G           L+ + + +N+L        C   + L  L+LS   + + +P    PA 
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKG-LPAK 275

Query: 471 IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS 508
           +  L LS N+++        + P +  L L  N    S
Sbjct: 276 LSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 44/296 (14%), Positives = 78/296 (26%), Gaps = 31/296 (10%)

Query: 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF-QSPISLEPLFNLSKRK 182
                SL  L    +        + ++   S++ L +       +       +  +S  +
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 183 TFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242
                                 L  + ++G              + L   ++S       
Sbjct: 99  ELT-------------------LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVE---IGTY 299
                      L+ L +A           +     L+TLD+S+N   G   +        
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 300 LPGLMDLNLSRNAFN---GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356
            P L  L L         G   +  A    L+ +D+S+N L              L  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
           LS   L+  +         L  L L  N+       S  +   +  L L  N    
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 19/209 (9%)

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS---EKFNLTNLMTLQLDG 383
           LE +    +            +  SL+ L +    +   I         ++ L  L L+ 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 384 NKFTGEILESLSKCYL--LEGLYLSDNHLTGEIPRWLGNLS-----ALEDIIMPNNNLEG 436
            + TG     L +     L  L L +         WL  L       L+ + +   +   
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA-----SIEQLHLSKNK---IEGRLESI 488
               +     +L  LDLS+N          +       +++ L L         G   ++
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 489 IHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
                 L  LDLS NSL  +        P
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 52/304 (17%), Positives = 98/304 (32%), Gaps = 35/304 (11%)

Query: 19  VNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLA- 77
           +  + +++ G  +     L  +++  +      + + + L+ L +    +   + +    
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 78  --NMTSLQVLYASSNELTGNISPGLCELVL--MRELHIDNNDLRGSLP----LCLANLTS 129
              ++ LQ L   + E+TG   P L E     +  L++ N            L       
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 130 LRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEIC 189
           L+VL ++      N S   +    ++  L LS+N        +  L              
Sbjct: 151 LKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCP------------ 197

Query: 190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVE 249
                          L   +       G        +  L+  DLSH +L         +
Sbjct: 198 -------LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 250 NNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS 309
             + L  L L+   L     +P     KL+ LD+S N      P      LP + +L+L 
Sbjct: 251 WPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLD-RNPSPDE--LPQVGNLSLK 304

Query: 310 RNAF 313
            N F
Sbjct: 305 GNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 34/166 (20%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
            R F  L  LD+                    S           + +       L  L  
Sbjct: 169 VRVFPALSTLDL--------------------SDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGS 119
              G     G      A    LQ L  S N L        C+    +  L++    L+  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           +P  L     L VLD+S N+L     +     L  +  L L  N F
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 26/170 (15%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFL-QIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQ 59
                +L  L++  V      ++L ++    KP LK LS+  +       + +R    L 
Sbjct: 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 60  ELYIGGYDLRGSLP----WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNND 115
            L +      G        C     +LQVL   +  +                       
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---------------------ET 215

Query: 116 LRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
             G      A    L+ LD+S N L     +      + +  L LS    
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 1e-18
 Identities = 56/285 (19%), Positives = 96/285 (33%), Gaps = 33/285 (11%)

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSL-FGSFWMPIHSHQKLATLDVSNNFFRGHI 292
            S  N                E+  L   +       +      + + L ++       +
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SL 74

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
           P  +    P +  L +++NA   S+P   A    LE +D   N+L+  +PE  A    SL
Sbjct: 75  PDNLP---PQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPA----SL 122

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
           + L + NN L   +  E      L  +  D N+ T  + E  +    LE L + +N LT 
Sbjct: 123 KHLDVDNNQLT--MLPE--LPALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLT- 173

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK----ILDLSNNSIFRTLPSCF-S 467
            +P    +L AL+   +  N LE  +P    + +  +          N I   +P    S
Sbjct: 174 FLPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFRCRENRI-THIPENILS 228

Query: 468 PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512
                 + L  N +  R+   +                  S   Q
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 50/239 (20%), Positives = 79/239 (33%), Gaps = 42/239 (17%)

Query: 229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL------FGSFWMPIHSHQKLATLD 282
                L+ LNLS   P+ L      +  L +  N+L        S          L  LD
Sbjct: 61  FSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLPELPAS----------LEYLD 106

Query: 283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
             +N     +P         L  L++  N     +P   A   +LE ++   NQLT  +P
Sbjct: 107 ACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP 156

Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG---EILESLSKCYL 399
           E       SLE+L++ NN L   +        +L  L +  N         + +      
Sbjct: 157 ELPT----SLEVLSVRNNQLT-FLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEET 208

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
                  +N +T  IP  + +L     II+ +N L   I     Q  +           
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 21/187 (11%)

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNNSL-QGHIFSEKFNLTNLMTLQLDGNKFTGE 389
           +  YN ++        +     E  AL   +  +     ++  +     LQL+    +  
Sbjct: 16  NSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 390 ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK 449
           + ++L     +  L ++ N L   +P    +L  L+     +N L   +P       SLK
Sbjct: 74  LPDNLPP--QITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELPA---SLK 123

Query: 450 ILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509
            LD+ NN +   LP    PA +E ++   N++    E        L  L +  N L   +
Sbjct: 124 HLDVDNNQL-TMLPE--LPALLEYINADNNQLTMLPELP----TSLEVLSVRNNQL-TFL 175

Query: 510 PNQIGRL 516
           P     L
Sbjct: 176 PELPESL 182

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 56/333 (16%), Positives = 91/333 (27%), Gaps = 86/333 (25%)

Query: 113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISL 172
            N + G+     +         +      + +S      +    EL L+  +        
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL------- 71

Query: 173 EPLFNLSKRKTFDSEICAETES---HYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDL 229
                     +    +  +        N+L                  + P+        
Sbjct: 72  ---------SSLPDNLPPQITVLEITQNALI-----------------SLPELP------ 99

Query: 230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR 289
             A L +L+           +N  L  L      L  S          L  LDV NN   
Sbjct: 100 --ASLEYLDAC---------DN-RLSTLP----ELPAS----------LKHLDVDNNQLT 133

Query: 290 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARC 349
             +P         L  +N   N     +P        LE + +  NQLT  +PE      
Sbjct: 134 -MLPELPA----LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE--- 180

Query: 350 FSLEILALSNNSLQG---HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
            SLE L +S N L+           +    +  +   N+ T  I E++        + L 
Sbjct: 181 -SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP 439
           DN L+  I   L   +A  D   P         
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 22/166 (13%)

Query: 4   FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYI 63
             +L+HLD+   Q       L ++ E    L++++      N  L         L+ L +
Sbjct: 119 PASLKHLDVDNNQ-------LTMLPELPALLEYINA----DNNQLTMLPELPTSLEVLSV 167

Query: 64  GGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRE----LHIDNNDLRGS 119
               L   LP       SL+ L  S+N L  ++           E         N +   
Sbjct: 168 RNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           +P  + +L     + + DN L+       L   T+  +      +F
Sbjct: 222 IPENILSLDPTCTIILEDNPLSS-RIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 69/395 (17%), Positives = 108/395 (27%), Gaps = 83/395 (21%)

Query: 33  SLKFLSLINSSKNTILDQ-GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
             +  +L   ++N  +       +    EL +   +L  SLP  L     + VL  + N 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA 91

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           L  ++      L     L   +N L  +LP       SL+ LDV +NQLT  +   P   
Sbjct: 92  LI-SLPELPASL---EYLDACDNRLS-TLP---ELPASLKHLDVDNNQLTM-LPELP--- 139

Query: 152 LTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS 211
              +E +   NN     P     L  LS                 N LT           
Sbjct: 140 -ALLEYINADNNQLTMLPELPTSLEVLS--------------VRNNQLT----------- 173

Query: 212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP 271
                   P+            L  L++S    N L    A   R               
Sbjct: 174 ------FLPELP--------ESLEALDVST---NLLESLPAVPVRNH------------- 203

Query: 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331
            HS +         N    HIP  I + L     + L  N  +  I      +       
Sbjct: 204 -HSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRI---RESLSQQTAQP 257

Query: 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL 391
             +                   +          +  S+   + +    +   N F+   L
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFL 316

Query: 392 ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
           + LS                 ++  WL  LSA  +
Sbjct: 317 DRLSDTVSARNTSGFRE----QVAAWLEKLSASAE 347

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 6   NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGG 65
            LE+++    Q       L ++ E   SL+ LS+ N+    + +        L+ L +  
Sbjct: 141 LLEYINADNNQ-------LTMLPELPTSLEVLSVRNNQLTFLPEL----PESLEALDVST 189

Query: 66  YDLRGSLPWCLANMTSLQ----VLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLP 121
             L  SLP         +          N +T +I   +  L     + +++N L   + 
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 122 LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE 156
             L+  T+           + +      +H    +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 46/269 (17%), Positives = 102/269 (37%), Gaps = 20/269 (7%)

Query: 252 ANLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
             ++ L L++N +                 L  L +++N     I  +  + L  L  L+
Sbjct: 52  EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 308 LSRNAFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
           LS N    ++ SS F  +  L  +++  N         + +    L+IL + N      I
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 367 FSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALE 425
             + F  LT L  L++D +       +SL     +  L L        +  ++   S++E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 426 DIIMPNNNLEGPIPIE--------FCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477
            + + + +L+     E          +  + + + +++ S+F+ +      + + +L  S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 478 KNKIEGRLESIIHDSPHLVTLDLSCNSLH 506
           +N+++   + I      L  + L  N   
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 21/250 (8%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
           + +LD+SNN    +I          L  L L+ N  N     SF+ +  LE +D+SYN L
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 338 TGEIPERMAARCFSLEILALSNNSLQ----GHIFSEKFNLTNLMTLQLDGNKFTGEI-LE 392
           +  +         SL  L L  N  +      +FS   +LT L  L++       +I  +
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQRK 168

Query: 393 SLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD 452
             +    LE L +  + L    P+ L ++  +  +I+        + I     +S++ L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 453 LSNNSIFRTLPSCFSP---------ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
           L +  +     S  S           +   + ++   +  ++  +++    L+ L+ S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 504 SLHGSIPNQI 513
            L  S+P+ I
Sbjct: 288 QLK-SVPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 55/334 (16%), Positives = 109/334 (32%), Gaps = 73/334 (21%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            ++K L L N+    I +  L++ V+LQ L +    +        +++ SL+ L  S N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 92  LTGNISPGLCE-LVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDVSDNQLTQNISSSPL 149
           L+ N+S    + L  +  L++  N  +        ++LT L++L V +      I     
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFIS 209
             LT +EEL +  +                                         L    
Sbjct: 171 AGLTFLEELEIDAS----------------------------------------DLQSYE 190

Query: 210 LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW 269
                     PK L    ++ +  L             V+  +++E L L D  L    +
Sbjct: 191 ----------PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 329
             + +         +N+                  ++ ++  +    +      +  L  
Sbjct: 240 SELST-------GETNSL----------IKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
           ++ S NQL   +P+ +  R  SL+ + L  N   
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 54/303 (17%), Positives = 88/303 (29%), Gaps = 65/303 (21%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
           + L + NN +       L    +L+ L ++ N +   I       L S+E L LS N+  
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY-- 111

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG-----YIDGGTFPK 221
                   L NLS    F              L+    LTF++L G       +   F  
Sbjct: 112 --------LSNLS-SSWFK------------PLS---SLTFLNLLGNPYKTLGETSLFSH 147

Query: 222 F--LYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLF----GSFWMPIHSH 275
              L           + +                LE L +  + L      S      S 
Sbjct: 148 LTKLQILRVGNMDTFTKI------QRKDFAGLTFLEELEIDASDLQSYEPKSL----KSI 197

Query: 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPS----SFADMKML 327
           Q ++ L +        +          +  L L     +      + +    S       
Sbjct: 198 QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG---HIFSEKFNLTNLMTLQLDGN 384
             V I+   L      ++  +   L  L  S N L+     IF     LT+L  + L  N
Sbjct: 257 RNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSLQKIWLHTN 311

Query: 385 KFT 387
            + 
Sbjct: 312 PWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 6/205 (2%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
              + +  N    H+P         L  L L  N       ++F  + +LE++D+S N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSK 396
              +          L  L L    LQ  +    F  L  L  L L  N       ++   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 397 CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
              L  L+L  N ++    R    L +L+ +++  N +    P  F  L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 457 SIFRTLPS-CFSP-ASIEQLHLSKN 479
           ++   LP+   +P  +++ L L+ N
Sbjct: 212 NL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNK 385
            +R+ +  N+++  +P      C +L IL L +N L   I +  F  L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 386 FTGEI-LESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPIE-F 442
               +   +      L  L+L    L  E+       L+AL+ + + +N L+  +P + F
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 443 CQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLS 501
             L +L  L L  N I       F    S+++L L +N++         D   L+TL L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 502 CNSLHGSIPNQI 513
            N+L  ++P + 
Sbjct: 210 ANNLS-ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            + + + L  +  + +     R   +L  L++    L          +  L+ L  S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 92  LTGNISPG-LCELVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDVSDNQLTQNISSSPL 149
              ++ P     L  +  LH+D   L+  L       L +L+ L + DN L   +     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 150 MHLTSIEELILSNNHF 165
             L ++  L L  N  
Sbjct: 150 RDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGG-YDLRGSLPWCLANMTSLQVLYASSN 90
            +L  L L ++    I       L  L++L +     LR   P     +  L  L+    
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 91  ELTGNISPG-LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL 149
            L   + PG    L  ++ L++ +N L+        +L +L  L +  N+++ ++     
Sbjct: 116 GLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAF 173

Query: 150 MHLTSIEELILSNNH 164
             L S++ L+L  N 
Sbjct: 174 RGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 53/287 (18%), Positives = 84/287 (29%), Gaps = 78/287 (27%)

Query: 88  SSNELT---GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNI 144
               L      I          + + +  N +            +L +L +  N L   I
Sbjct: 19  PQQGLQAVPVGIPAAS------QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71

Query: 145 SSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQ 204
            ++    L  +E+L LS+N                                        Q
Sbjct: 72  DAAAFTGLALLEQLDLSDNA---------------------------------------Q 92

Query: 205 LTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG----KFPNWLVENNANLERLLLA 260
           L  +         TF       H L    L  L+L      +    L    A L+ L L 
Sbjct: 93  LRSVD------PATF-------HGLGR--LHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 261 DNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS 316
           DN+L      +F         L  L +  N     +P      L  L  L L +N     
Sbjct: 138 DNALQALPDDTF----RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
            P +F D+  L  + +  N L+  +P    A   +L+ L L++N   
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 25/132 (18%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            +L++L L +++   + D   R L +L  L++ G  +          + SL  L    N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
           +  ++ P                           +L  L  L +  N L+  + +  L  
Sbjct: 189 VA-HVHPH-----------------------AFRDLGRLMTLYLFANNLS-ALPTEALAP 223

Query: 152 LTSIEELILSNN 163
           L +++ L L++N
Sbjct: 224 LRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 403 LYLSDNHLTGEIPRWLGNLSA-LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461
                  L   +P     + A  + I +  N +       F    +L IL L +N + R 
Sbjct: 16  TSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 462 LPSCFSP-ASIEQLHLSKNKIEGRLES-IIHDSPHLVTLDLSCNSLHGSIPN 511
             + F+  A +EQL LS N     ++    H    L TL L    L   +  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQ 59
             +  +++ +      +  +   +Q      P++  L L   + N + D + L  L +L 
Sbjct: 39  QNELNSIDQIIANNSDIK-SVQGIQ----YLPNVTKLFL---NGNKLTDIKPLTNLKNLG 90

Query: 60  ELYIGG---YDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDL 116
            L++      DL       L ++  L+ L    N ++ +I+  L  L  +  L++ NN +
Sbjct: 91  WLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI 143

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
                L  + LT L  L + DNQ++      PL  LT ++ L LS NH       L  L 
Sbjct: 144 TDITVL--SRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI----SDLRALA 194

Query: 177 NLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGG-TFPKFLYHQHDLKNADLS 235
            L      +           N  +       +      DG    P+ +    D +  ++ 
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN---TDGSLVTPEIISDDGDYEKPNVK 251

Query: 236 HLNLS 240
                
Sbjct: 252 WHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 6e-14
 Identities = 56/388 (14%), Positives = 105/388 (27%), Gaps = 103/388 (26%)

Query: 106 MRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           M E    +  ++   P            ++    +T    +     L SI+++I +N+  
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH 225
                S++ +  L                                               
Sbjct: 56  ----KSVQGIQYLPN--------------------------------------------- 66

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
              +    L+   L+   P   + N  NL  L L +N +       +   +KL +L + +
Sbjct: 67  ---VTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEH 118

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N       +    +LP L  L L  N    +  +  + +  L+ + +  NQ++       
Sbjct: 119 NGISDINGLV---HLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS------- 166

Query: 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
                 +  LA                LT L  L L  N  +   L +L+    L+ L L
Sbjct: 167 -----DIVPLA---------------GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 204

Query: 406 SDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC 465
                  +      NL     +   + +L  P  I           D    ++   LP  
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVKWHLPEF 257

Query: 466 FSPASIEQLHLSKNKIEGRLESIIHDSP 493
            +  S                      P
Sbjct: 258 TNEVSFIFYQPVTIGKAKARFHGRVTQP 285

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 46/303 (15%), Positives = 103/303 (33%), Gaps = 54/303 (17%)

Query: 40  INSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISP 98
             +    I             +  +    +  ++      + S+  + A+++++  ++  
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ- 59

Query: 99  GLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEEL 158
           G+  L  + +L ++ N L    P  L NL +L  L + +N++  ++  S L  L  ++ L
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL--SSLKDLKKLKSL 114

Query: 159 ILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG-YIDGG 217
            L +N        +  L +L +                        L  + L    I   
Sbjct: 115 SLEHNGI----SDINGLVHLPQ------------------------LESLYLGNNKI--- 143

Query: 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQK 277
           T    L     L    L    +S       +     L+ L L+ N +  S    +   + 
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKN 198

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERVDISYN 335
           L  L++ +         +   +   L+  N  +N  +GS+  P   +D    E+ ++ ++
Sbjct: 199 LDVLELFSQ----ECLNKPINHQSNLVVPNTVKN-TDGSLVTPEIISDDGDYEKPNVKWH 253

Query: 336 QLT 338
              
Sbjct: 254 LPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
           +             L    +T  +      L++++ II  N++++    I+   L ++  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTK 69

Query: 451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           L L+ N +   +    +  ++  L L +NKI+  L S + D   L +L L  N +
Sbjct: 70  LFLNGNKL-TDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 23/184 (12%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQ 59
                 LE L +G  ++  + + L         L  LSL     N I D   L  L  LQ
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSL---EDNQISDIVPLAGLTKLQ 178

Query: 60  ELYIGG---YDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDL 116
            LY+      DLR      LA + +L VL   S E           LV+   +   N D 
Sbjct: 179 NLYLSKNHISDLRA-----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV--KNTDG 231

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
               P  +++       +V  +        +  +     + + +            +PL 
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWH----LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 177 NLSK 180
            +  
Sbjct: 288 EVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
           +         +    P      +      +   ++   +     +LNS+  +  +N+ I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI- 55

Query: 460 RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           +++       ++ +L L+ NK+       + +  +L  L L  N +
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKI 99

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 6e-15
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 29/210 (13%)

Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFNL 373
           +P S       + +D+S+N L   +          L++L LS     +++   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 374 TNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
           ++L TL L GN            LS    L+ L   + +L       +G+L  L+++ + 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 431 NNNL-EGPIPIEFCQLNSLKILDLSNNSIFRTLPS-CFS-----PASIEQLHLSKNKIEG 483
           +N +    +P  F  L +L+ LDLS+N I +++           P     L LS N +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 484 RLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
            ++        L  L L  N L  S+P+ I
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 18/209 (8%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SL 362
           L+LS N        SF     L+ +D+S  ++   I +        L  L L+ N   SL
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 363 QGHIFSEKFNLTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTG-EIPRWL 418
               FS    L++L  L              +  L     L+ L ++ N +   ++P + 
Sbjct: 92  ALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLPEYF 145

Query: 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI----LDLSNNSIFRTLPSCFSPASIEQL 474
            NL+ LE + + +N ++     +   L+ + +    LDLS N +    P  F    +++L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 475 HLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
            L  N+++   + I      L  + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 40/213 (18%)

Query: 253 NLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308
            L+ L L+   +     G++     S   L+TL ++ N  +  + +   + L  L  L  
Sbjct: 53  ELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS 368
                                       L   +         +L+ L +++N +Q     
Sbjct: 108 ------------------------VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 369 EKF-NLTNLMTLQLDGNKFT---GEILESLSK-CYLLEGLYLSDNHLTGEIPRWLGNLSA 423
           E F NLTNL  L L  NK        L  L +   L   L LS N +   I         
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 424 LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
           L+++ +  N L+      F +L SL+ + L  N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 55  LVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSNELTGNISPGL-CELVLMRELHID 112
              LQ L +   +++ ++      +++ L  L  + N +  +++ G    L  +++L   
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
             +L       + +L +L+ L+V+ N +          +LT++E L LS+N
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 3e-14
 Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 50/325 (15%)

Query: 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPI----HSHQKLATLDV 283
           D+++ D+    LS      L+      + + L D  L  +    I      +  LA L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 284 SNNFFRGHIPVEIGTYL----PGLMDLNLSRNAFN----GSIPSSFADMKMLERVDISYN 335
            +N         +   L      +  L+L          G + S+   +  L+ + +S N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 336 QLTGE----IPERMAARCFSLEILALSNNSLQ----GHIFSEKFNLTNLMTLQLDGNKFT 387
            L       + E +      LE L L   SL       + S      +   L +  N   
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 388 GEILESLSKC-----YLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGPI 438
              +  L +        LE L L    +T +    +   + + ++L ++ + +N L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 439 PIEFCQ-----LNSLKILDLSNNSI--------FRTLPSCFSPASIEQLHLSKNKIEGR- 484
             E C       + L+ L +    I         R L +     S+++L L+ N++    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK---ESLKELSLAGNELGDEG 300

Query: 485 ----LESIIHDSPHLVTLDLSCNSL 505
                E+++     L +L +   S 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 82/480 (17%), Positives = 144/480 (30%), Gaps = 98/480 (20%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLV----HLQELYIGGYDLR----GSLPWCLANMTSLQV 84
            ++ L +       + D    +L+      Q + +    L       +   L    +L  
Sbjct: 4   DIQSLDI---QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 85  LYASSNELTGNISPGLCELVLM-----RELHIDNNDL--RGSLPLC--LANLTSLRVLDV 135
           L   SNEL       + + +       ++L + N  L   G   L   L  L +L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 136 SDNQLT----QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE 191
           SDN L     Q +    L     +E+L L       S  S EPL ++ + K         
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--SAASCEPLASVLRAKP-------- 170

Query: 192 TESHYNSLTPKFQLTFISLSGY--IDGG--TFPKFLYHQHD-LKNADLSHLNLSGKFPNW 246
                           +++S     + G     + L      L+   L    ++      
Sbjct: 171 ------------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 247 LVE---NNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNFFRGHIPVEIGT 298
           L     + A+L  L L  N L       +     H   +L TL +           ++  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 299 YL---PGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPERMA---A 347
            L     L +L+L+ N           +        LE + +     T       +   A
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 348 RCFSLEILALSNNSLQG---HIFSE--KFNLTNLMTLQLDGNKFTGE----ILESLSKCY 398
           +   L  L +SNN L+        +      + L  L L     +      +  +L   +
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
            L  L LS+N L          +  L + +     L             L+ L L +   
Sbjct: 399 SLRELDLSNNCLGDAG------ILQLVESVRQPGCL-------------LEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 70/435 (16%), Positives = 127/435 (29%), Gaps = 84/435 (19%)

Query: 128 TSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187
             ++ LD+   +L+    +  L  L   + + L +     +    + + +  +       
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNP---- 56

Query: 188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWL 247
                            L  ++L     G      +       +  +  L+L       L
Sbjct: 57  ----------------ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN---CCL 97

Query: 248 -----------VENNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNFFRGH 291
                      +     L+ L L+DN L  +    +         +L  L +        
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 292 IPVEIGTYL---PGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPE 343
               + + L   P   +L +S N  N +               LE + +    +T +   
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 344 RMA---ARCFSLEILALSNNSLQG---HIFSEKFNLTN--LMTLQLDGNKFTGE----IL 391
            +    A   SL  LAL +N L               +  L TL +     T +    + 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 392 ESLSKCYLLEGLYLSDNHLTGEIPRWLGNL-----SALEDIIMPNNNL--EGPIPI-EFC 443
             L     L+ L L+ N L  E  R L          LE + + + +             
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 444 QLN-SLKILDLSNNSI--------FRTLPSCFSPASIEQLHLSKNKI--EG--RLESIIH 490
             N  L  L +SNN +         + L    S   +  L L+   +       L + + 
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGS--VLRVLWLADCDVSDSSCSSLAATLL 395

Query: 491 DSPHLVTLDLSCNSL 505
            +  L  LDLS N L
Sbjct: 396 ANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 49/260 (18%), Positives = 75/260 (28%), Gaps = 47/260 (18%)

Query: 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN----GSIPSSFADMKMLERVD 331
             + +LD+           E+   L     + L            I S+      L  ++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 332 ISYNQLTGE----IPERMAARCFSLEILALSNNSLQ----GHIFSEKFNLTNLMTLQLDG 383
           +  N+L       + + +      ++ L+L N  L     G + S    L  L  L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 384 NKFTGEILESLSK-----CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI 438
           N      L+ L +        LE L L    L+      L ++                 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----------------- 165

Query: 439 PIEFCQLNSLKILDLSNNSI----FRTLPSCF--SPASIEQLHLSKNKIEGR----LESI 488
                     K L +SNN I     R L      SP  +E L L    +       L  I
Sbjct: 166 ---LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 489 IHDSPHLVTLDLSCNSLHGS 508
           +     L  L L  N L   
Sbjct: 223 VASKASLRELALGSNKLGDV 242

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 74/424 (17%), Positives = 130/424 (30%), Gaps = 85/424 (20%)

Query: 29  ESKPSLKFLSLINSSKNTILDQGLRQL--------VHLQELYIGGYDLR----GSLPWCL 76
              P+L  L+L     N + D G+  +          +Q+L +    L     G L   L
Sbjct: 53  RVNPALAELNL---RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109

Query: 77  ANMTSLQVLYASSNELTGNISPGLCELVL-----MRELHIDNNDL--RGSLPLC--LANL 127
             + +LQ L+ S N L       LCE +L     + +L ++   L      PL   L   
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 128 TSLRVLDVSDNQLT----QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKT 183
              + L VS+N +     + +          +E L L +     +  +   L  +   K 
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV--TSDNCRDLCGIVASKA 227

Query: 184 FDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF 243
                                L  ++L     G      L       ++ L  L +    
Sbjct: 228 --------------------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-- 265

Query: 244 PNWL-----------VENNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNF 287
              +           +    +L+ L LA N L       +         +L +L V +  
Sbjct: 266 -CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 288 FRGHIPVEIGTYL---PGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTG 339
           F         + L     L++L +S N    +              +L  + ++   ++ 
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 340 EIPERMA---ARCFSLEILALSNNSLQ---GHIFSE--KFNLTNLMTLQLDGNKFTGEIL 391
                +A       SL  L LSNN L         E  +     L  L L    ++ E+ 
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444

Query: 392 ESLS 395
           + L 
Sbjct: 445 DRLQ 448

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 6   NLEHLDMGEVQV-DVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLV-------- 56
            LE L +    V   N   L  +  SK SL+ L+L     N + D G+ +L         
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELAL---GSNKLGDVGMAELCPGLLHPSS 256

Query: 57  HLQELYIGGYDLR----GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVL-----MR 107
            L+ L+I    +     G L   L    SL+ L  + NEL    +  LCE +L     + 
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 108 ELHIDNNDLRG----SLPLCLANLTSLRVLDVSDNQLT----QNISSSPLMHLTSIEELI 159
            L + +              LA    L  L +S+N+L     + +        + +  L 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 160 LSNNHF 165
           L++   
Sbjct: 377 LADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 5   KNLEHLDMGEVQV-DVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLV------- 56
             L  L + E  +       L  V  +K SLK LSL   + N + D+G R L        
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL---AGNELGDEGARLLCETLLEPG 312

Query: 57  -HLQELYIGGYDLRG----SLPWCLANMTSLQVLYASSNELTGNISPGLCELVL-----M 106
             L+ L++                LA    L  L  S+N L       LC+ +      +
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372

Query: 107 RELHIDNNDLR----GSLPLCLANLTSLRVLDVSDNQLT----QNISSSPLMHLTSIEEL 158
           R L + + D+      SL   L    SLR LD+S+N L       +  S       +E+L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 159 ILSNNHF 165
           +L + ++
Sbjct: 433 VLYDIYW 439

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 30  SKPSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYAS 88
           ++  +  L+ I  +   + D  G+    ++++L I         P  ++ +++L+ L   
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 89  SNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP 148
             ++T +  P L  L  +  L I ++    S+   +  L  +  +D+S N    +I   P
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MP 154

Query: 149 LMHLTSIEELILSNNHFFQSPISLEPLFNLSK 180
           L  L  ++ L +  +           + +  K
Sbjct: 155 LKTLPELKSLNIQFDGV----HDYRGIEDFPK 182

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
            + K        +++  +    Q+  L  + +   ++       +    +++ L  ++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMH 151
            T N +P +  L  +  L I   D+       L+ LTSL +LD+S +    +   + +  
Sbjct: 78  AT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINT 134

Query: 152 LTSIEELILSNNHFFQSPISLEPLFNL 178
           L  +  + LS N      + L+ L  L
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 7/168 (4%)

Query: 314 NGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL 373
           + +   + A M  L  + ++   +T            +++ L ++N       ++    L
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATN--YNPISGL 87

Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433
           +NL  L++ G   T + + +LS    L  L +S +     I   +  L  +  I +  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI 481
               I      L  LK L++  + +            + QL+     I
Sbjct: 148 AITDIM-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 8/134 (5%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
            ++K L++   +     +   +  L +L+ L I G D+       L+ +TSL +L  S +
Sbjct: 66  HNIKDLTI---NNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
               +I   +  L  +  + +  N     +   L  L  L+ L++  + +        + 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIE 178

Query: 151 HLTSIEELILSNNH 164
               + +L   +  
Sbjct: 179 DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 3   KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELY 62
              N++ L +  +    N + +        +L+ L ++     +     L  L  L  L 
Sbjct: 64  YAHNIKDLTINNIHAT-NYNPI----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 63  IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPL 122
           I       S+   +  +  +  +  S N    +I P L  L  ++ L+I  + +     +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI 177

Query: 123 CLANLTSLRVLDVSDNQLT 141
              +   L  L      + 
Sbjct: 178 --EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
            +  L ++N     + P+     L  L  L +           + + +  L  +DIS++ 
Sbjct: 67  NIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK 396
               I  ++      +  + LS N     I      L  L +L +  +         +  
Sbjct: 124 HDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIED 179

Query: 397 CYLLEGLYLSDNHLTGE 413
              L  LY     + G+
Sbjct: 180 FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
                +   L  +         ++    L  + L++ ++T      +     ++D+ + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIH 490
            +     PI    L++L+ L +    +        S   S+  L +S +  +  + + I+
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 491 DSPHLVTLDLSCNSL 505
             P + ++DLS N  
Sbjct: 134 TLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 29/142 (20%)

Query: 248 VENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
           +   +NLERL +    +       +     L  LD+S++     I  +I T LP +  ++
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF 367
           LS N     I      +  L+ ++I ++ +                 +            
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVH------------DYRGIE----------- 178

Query: 368 SEKFNLTNLMTLQLDGNKFTGE 389
               +   L  L        G+
Sbjct: 179 ----DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 125 ANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTF 184
           A + SL  + +++  +T     + + +  +I++L ++N H      +  P+  LS  +  
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHA----TNYNPISGLSNLERL 93

Query: 185 DSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFP 244
                  T     +L+    LT + +S      +    +     + + DLS+        
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 245 NWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
              ++    L+ L +  + +    +  I    KL  L   + 
Sbjct: 154 P--LKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQ 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 15/234 (6%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS-FADMKMLERVDIS-YN 335
              L       R  I     +    L  + +S+N     I +  F+++  L  + I   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 336 QLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESL 394
            L   I         +L+ L +SN  ++ H+      +    + L +  N     I  + 
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 395 SK--CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKIL 451
                +    L+L+ N +              E  +  NNNLE  +P + F   +   IL
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVIL 207

Query: 452 DLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS 504
           D+S   I             +        K    LE +      L+   L+  S
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL----VALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 36/231 (15%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339
                 +     IP ++       ++L             +F+    LE+++IS N +  
Sbjct: 13  VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 340 EIPERMAARCFSLEILALSNN----SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS 395
            I   + +    L  + +        +    F    NL NL  L +         L  + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIK--HLPDVH 123

Query: 396 KCYL--LEGLYLSDNHLTGEIP-RWLGNLSA-LEDIIMPNNNLEGPIPIEFCQLNSLKIL 451
           K +      L + DN     I       LS     + +  N ++      F      ++ 
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 452 DLSNNSIFRTLPSCFSPAS-IEQLHLSKNKIEGRLESIIHDSPHLVTLDLS 501
              NN++       F  AS    L +S+ +I       + +   L      
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 252 ANLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
            N   L      L     G+F         L  +++S N     I  ++ + LP L ++ 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAF----SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 308 LSRNAFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN----SL 362
           + +      I    F ++  L+ + IS   +   +P+          +L + +N    ++
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 363 QGHIFSEKFNLT-NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNL 421
           + + F     L+   + L L+ N        + +   L E     +N+L           
Sbjct: 145 ERNSFV---GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 422 SALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477
           S    + +    +          L  L+     N    + LP+     ++ +  L+
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 19/194 (9%)

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTG 388
                +++T EIP  +     +   L      L+  I    F    +L  +++  N    
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 389 EI-LESLSKCYLLEGLYLSD-NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLN 446
            I  +  S    L  + +   N+L    P    NL  L+ +++ N  ++    +      
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 447 SLKILDLSNNSIFRTLPS-CFS--PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
              +LD+ +N    T+    F         L L+KN I+  + +   +   L  L+LS N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 504 SLHGSIPNQIGRLP 517
                  N +  LP
Sbjct: 188 -------NNLEELP 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 37/260 (14%), Positives = 79/260 (30%), Gaps = 36/260 (13%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYAS-S 89
            +   L  + +    I          L+++ I   D+   +     +N+  L  +    +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 90  NELTGNISPGLCE-LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP 148
           N L   I+P   + L  ++ L I N  ++    +   +     +LD+ DN     I  + 
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 149 LMHLTS-IEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
            + L+     L L+ N   +        FN ++    +        S  N+L        
Sbjct: 149 FVGLSFESVILWLNKNGIQEIH---NSAFNGTQLDELNL-------SDNNNLE------- 191

Query: 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267
                 +    F    +        D+S   +    P++ +EN   L      +     +
Sbjct: 192 -----ELPNDVF----HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 241

Query: 268 FWMPIHSHQKLATLDVSNNF 287
                     L    ++   
Sbjct: 242 L----EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 24/219 (10%)

Query: 250 NNANLERLLLADNSLF-----GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM 304
              +LE++ ++ N +        F     +  KL  + +       +I  E    LP L 
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVF----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 305 DLNLSRNAFNGSIPS-SFADMKMLERVDISYNQLTGEIPERM-AARCFSLEILALSNNSL 362
            L +S       +P            +DI  N     I         F   IL L+ N +
Sbjct: 108 YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 363 QGHIFSEKFNLTNLMTLQL-DGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWL 418
           Q  I +  FN T L  L L D N       ++    S       L +S   +       L
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG---PVILDISRTRIHSLPSYGL 222

Query: 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
            NL  L        NL+    +E  +L +L    L+  S
Sbjct: 223 ENLKKLR--ARSTYNLKKLPTLE--KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 48/304 (15%), Positives = 86/304 (28%), Gaps = 80/304 (26%)

Query: 106 MRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
             EL      LR       +    L  +++S N + + I +    +L  + E+ +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA-- 89

Query: 166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH 225
                                          N+L             YI+   F     +
Sbjct: 90  -------------------------------NNLL------------YINPEAF----QN 102

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
             +L+   +S+  +    P+    ++     L + DN               + T+    
Sbjct: 103 LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI-------------NIHTI--ER 146

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
           N F G             + L L++N       S+F   ++ E      N L  E+P  +
Sbjct: 147 NSFVGL--------SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDV 197

Query: 346 AARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLY 404
                   IL +S   +   + S    NL  L        K     L +L K   L    
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEAS 252

Query: 405 LSDN 408
           L+  
Sbjct: 253 LTYP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 19/233 (8%)

Query: 249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308
              AN  ++    +++  +  +       + TL            +E   YL  L+ L L
Sbjct: 16  PALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS 368
             N    +  +   ++  +  +++S N L         A   S++ L L++  +     +
Sbjct: 71  KDNQI--TDLAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTSTQITD--VT 123

Query: 369 EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428
               L+NL  L LD N+ T   +  L+    L+ L + +  ++   P  L NLS L  + 
Sbjct: 124 PLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI 481
             +N +    P+    L +L  + L NN I   +    + +++  + L+   I
Sbjct: 180 ADDNKISDISPLA--SLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 55/309 (17%), Positives = 116/309 (37%), Gaps = 50/309 (16%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
           P+L     I + K+ + D      L  +  L   G  +  ++   +  + +L  L    N
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN 73

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
           ++T +++P L  L  + EL +  N L+    +  A L S++ LD++  Q+T     +PL 
Sbjct: 74  QIT-DLAP-LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQIT---DVTPLA 126

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
            L++++ L L  N       ++ PL  L+  +                ++         L
Sbjct: 127 GLSNLQVLYLDLNQI----TNISPLAGLTNLQYLS--------IGNAQVS--------DL 166

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270
           +           L +   L         +S       + +  NL  + L +N +  S   
Sbjct: 167 TP----------LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQI--SDVS 211

Query: 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI-PSSFADMKMLER 329
           P+ +   L  + ++N      I  +   Y   L+  N+ +      I P++ +D      
Sbjct: 212 PLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYAS 267

Query: 330 VDISYNQLT 338
            ++++N  +
Sbjct: 268 PNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
           +   +A   +++       + +L  + TL   G   T   +E +     L GL L DN +
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS 470
           T   P  L NL+ + ++ +  N L+    I    L S+K LDL++  I   +      ++
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQI-TDVTPLAGLSN 130

Query: 471 IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           ++ L+L  N+I     S +    +L  L +    +
Sbjct: 131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 53/318 (16%), Positives = 96/318 (30%), Gaps = 72/318 (22%)

Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRK 182
               L +   +    + +T    +     L  I  L            ++E +  L+   
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGV----TTIEGVQYLNNLI 66

Query: 183 TFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242
             +           N +T                                DL+ L     
Sbjct: 67  GLEL--------KDNQIT--------------------------------DLAPL----- 81

Query: 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG 302
                 +N   +  L L+ N L       I   Q + TLD+++       P+     L  
Sbjct: 82  ------KNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLA---GLSN 130

Query: 303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSL 362
           L  L L  N    +  S  A +  L+ + I   Q++   P    A    L  L   +N +
Sbjct: 131 LQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKI 185

Query: 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLS 422
                S   +L NL+ + L  N+ +   +  L+    L  + L++  +T +   +  NL 
Sbjct: 186 SD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 423 ALEDIIMPNNNLEGPIPI 440
               +  P+     P  I
Sbjct: 242 VPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQ 59
                NL+ L +   Q+   +           +L++LS+       + D   L  L  L 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPL-----AGLTNLQYLSI---GNAQVSDLTPLANLSKLT 176

Query: 60  ELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS 119
            L      +    P  LA++ +L  ++  +N+++ ++SP L     +  + + N  +   
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQ 232

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSS 147
                 NL    V+           + S
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 16/206 (7%)

Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
               +  NL + +       +  ++  ++++  + + +   +         ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77

Query: 360 NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG 419
           N L         NL NL  L LD NK     L SL     L+ L L  N ++      L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISDING--LV 131

Query: 420 NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
           +L  LE + + NN +     +   +L  L  L L +N I   +        ++ L+LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN 188

Query: 480 KIEGRLESIIHDSPHLVTLDLSCNSL 505
            I   L ++     +L  L+L     
Sbjct: 189 HIS-DLRALAG-LKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
           P++  L L   + N + D + L  L +L  L++    ++      L ++  L+ L    N
Sbjct: 68  PNVTKLFL---NGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
            ++ +I+  L  L  +  L++ NN +     L  + LT L  L + DNQ++      PL 
Sbjct: 123 GIS-DING-LVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQIS---DIVPLA 175

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD 185
            LT ++ L LS NH       L  L  L      +
Sbjct: 176 GLTKLQNLYLSKNHI----SDLRALAGLKNLDVLE 206

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 51/287 (17%)

Query: 51  GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH 110
                    +  +    +  ++      + S+  + A+++++  ++  G+  L  + +L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF 74

Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI 170
           ++ N L    P  LANL +L  L + +N++      S L  L  ++ L L +N       
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGI----S 125

Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG-YIDGGTFPKFLYHQHDL 229
            +  L +L +                        L  + L    I   T    L     L
Sbjct: 126 DINGLVHLPQ------------------------LESLYLGNNKI---TDITVLSRLTKL 158

Query: 230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR 289
               L    +S       +     L+ L L+ N +  S    +   + L  L++ +    
Sbjct: 159 DTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ--- 210

Query: 290 GHIPVEIGTYLPGLMDLNLSRNAFNGSI-PSSFADMKMLERVDISYN 335
                +   +   L+  N  +N     + P   +D    E+ ++ ++
Sbjct: 211 -ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 70/288 (24%)

Query: 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKT 183
                     ++    +T    +     L SI+++I +N+       S++ +  L     
Sbjct: 20  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI----KSVQGIQYLPN--- 69

Query: 184 FDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF 243
                                                        +    L+   L+   
Sbjct: 70  ---------------------------------------------VTKLFLNGNKLTDIK 84

Query: 244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGL 303
           P   + N  NL  L L +N +       +   +KL +L + +N       +    +LP L
Sbjct: 85  P---LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISDINGLV---HLPQL 136

Query: 304 MDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
             L L  N    +  +  + +  L+ + +  NQ++ +I     A    L+ L LS N + 
Sbjct: 137 ESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS 191

Query: 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
                    L NL  L+L   +   + +   S   +   +  +D  L 
Sbjct: 192 D--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 20/218 (9%)

Query: 226 QHDLKNADLSHLNLSGKFPNWL--VENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283
           Q++L +  +  +  +      +  ++   N+ +L L  N L  +   P+ + + L  L +
Sbjct: 42  QNELNS--IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFL 97

Query: 284 SNNFFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
             N     +  +     L  L  L+L  N    S  +    +  LE + +  N++T +I 
Sbjct: 98  DEN----KVKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT-DIT 150

Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEG 402
               +R   L+ L+L +N +          LT L  L L  N  +   L +L+    L+ 
Sbjct: 151 VL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDV 204

Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI 440
           L L       +      NL     +   + +L  P  I
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
                +   L     T     + ++   ++ +  +++ +   +   +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491
           N L    P+    L +L  L L  N + + L S      ++ L L  N I   +  ++H 
Sbjct: 78  NKLTDIKPLA--NLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGIS-DINGLVH- 132

Query: 492 SPHLVTLDLSCNSL 505
            P L +L L  N +
Sbjct: 133 LPQLESLYLGNNKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 44/330 (13%), Positives = 99/330 (30%), Gaps = 72/330 (21%)

Query: 85  LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNI 144
                  +   I           + ++    +  ++      L S+  +  +++ +    
Sbjct: 7   TITVPTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK--- 59

Query: 145 SSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQ 204
           S   + +L ++ +L L+ N        ++PL NL                          
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKL----TDIKPLANLKN------------------------ 91

Query: 205 LTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL 264
                                   L    L    +     +  +++   L+ L L  N +
Sbjct: 92  ------------------------LGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGI 124

Query: 265 FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 324
             S    +    +L +L + NN       + + + L  L  L+L  N    S     A +
Sbjct: 125 --SDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQI--SDIVPLAGL 177

Query: 325 KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN 384
             L+ + +S N ++ ++     A   +L++L L +        + + NL    T++    
Sbjct: 178 TKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 385 KFTGEILESLSKCYLLEGLYLSDNHLTGEI 414
                 + S    Y    +       T E+
Sbjct: 235 SLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ-- 363
           L+L  N  +     +F  +  L  + ++ N+L   +P  +     +LE L +++N LQ  
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 364 -GHIFSEKFNLTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWL- 418
              +F     L NL  L+LD N+       + +SL+K   L  L L  N L   +P+ + 
Sbjct: 101 PIGVFD---QLVNLAELRLDRNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVF 153

Query: 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLS 477
             L++L+++ + NN L+      F +L  LK L L NN + R     F     ++ L L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 478 KN 479
           +N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 54/212 (25%), Positives = 77/212 (36%), Gaps = 55/212 (25%)

Query: 316 SIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ---GHIFSEKF 371
           +IPS+  AD K L   D+  N+L+  +P +   R   L +L L++N LQ     IF    
Sbjct: 30  AIPSNIPADTKKL---DLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--- 82

Query: 372 NLTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428
            L NL TL +  NK       + + L     L  L L  N L            +L   +
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLK-----------SLPPRV 128

Query: 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSI-------FRTLPSCFSPASIEQLHLSKNKI 481
                        F  L  L  L L  N +       F  L S      +++L L  N++
Sbjct: 129 -------------FDSLTKLTYLSLGYNELQSLPKGVFDKLTS------LKELRLYNNQL 169

Query: 482 EGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
           +   E        L TL L  N L   +P   
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 77  ANMTSLQVLYASSNELTGNISPGLC-ELVLMRELHIDNNDLRGSLPLCL-ANLTSLRVLD 134
             +T L++LY + N+L   +  G+  EL  +  L + +N L+ +LP+ +   L +L  L 
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 135 VSDNQLTQNISSSPLMHLTSIEELILSNN 163
           +  NQL  ++       LT +  L L  N
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 9/135 (6%)

Query: 33  SLKFLSLINSSKNTILDQGL-RQLVHLQELYIGGYDLRGSLPWCL-ANMTSLQVLYASSN 90
            L+ L L N +K   L  G+ ++L +L+ L++    L+ +LP  +   + +L  L    N
Sbjct: 62  KLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN 119

Query: 91  ELTGNISPGLCE-LVLMRELHIDNNDLRGSLPLCL-ANLTSLRVLDVSDNQLTQNISSSP 148
           +L  ++ P + + L  +  L +  N+L+ SLP  +   LTSL+ L + +NQL + +    
Sbjct: 120 QLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGA 176

Query: 149 LMHLTSIEELILSNN 163
              LT ++ L L NN
Sbjct: 177 FDKLTELKTLKLDNN 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 12/178 (6%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH 365
           L+LS N       ++      L ++++   +LT ++          L  L LS+N LQ  
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-S 91

Query: 366 IFSEKFNLTNLMTLQLDGNKFTG---EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLS 422
           +      L  L  L +  N+ T      L  L +   L+ LYL  N L    P  L    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNELKTLPPGLLTPTP 148

Query: 423 ALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
            LE + + NNNL   +P      L +L  L L  NS++      F    +    L  N
Sbjct: 149 KLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 4   FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYI 63
            K+   L + E  +    +F          L  L+L  +    +  Q    L  L  L +
Sbjct: 30  PKDTTILHLSENLL---YTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDL 84

Query: 64  GGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL-CELVLMRELHIDNNDLRGSLPL 122
               L+ SLP     + +L VL  S N LT ++  G    L  ++EL++  N+L+ +LP 
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 123 -CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
             L     L  L +++N LT+ + +  L  L +++ L+L  N
Sbjct: 142 GLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
              L+LS+N L       L   + L  + +    L   + +    L  L  LDLS+N + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQL- 89

Query: 460 RTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
           ++LP       ++  L +S N++       +     L  L L  N L  ++P
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 78  NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD 137
            + S   +      LT  + P L        LH+  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 138 NQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
            +LT          L  +  L LS+N     P+  + L  L
Sbjct: 65  AELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 39/202 (19%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNN----SLQGHIFSEKFNLTNLMTLQLD 382
            + + +    L   IP    +   ++  + +S +     L+ H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 383 GNKFTGEI-LESLSKCYLLEGLYLSDNHLTGEIP--RWLGNLSALEDIIMPNNNLEGPIP 439
             +    I  ++L +  LL+ L + +  L    P    + +      + + +N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 440 IE-FCQL-NSLKILDLSNNSIFRTLPSC-FSPASIEQLHLSKNKIEGRLESIIHDS---- 492
           +  F  L N    L L NN    ++    F+   ++ ++L+KNK    L  I  D+    
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YLTVIDKDAFGGV 203

Query: 493 -PHLVTLDLSCNSLHGSIPNQI 513
                 LD+S  S+  ++P++ 
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERVDISYNQ 336
             TL +     R  IP    + LP +  + +S +     + S SF ++  +  ++I   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHI--FSEKFNLTNLMTLQLDGNKFTGEI---- 390
               I          L+ L + N  L+      ++ ++      L++  N +   I    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNS-L 448
            + L        L L +N  T  +  +  N + L+ + +  N     I  + F  + S  
Sbjct: 151 FQGLCN--ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 449 KILDLSNNSIFRTLPS 464
            +LD+S  S+   LPS
Sbjct: 208 SLLDVSQTSV-TALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 13  GEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSL 72
            E    V    +Q +    PS + L LI +   TI       L ++  +Y+        L
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 73  PW-CLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGSLP--LCLANLT 128
                 N++ +  +   +      I P   + L L++ L I N  L+   P    + +  
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTD 130

Query: 129 SLRVLDVSDNQLTQNISSSPLMHLTS-IEELILSNNHF 165
              +L+++DN    +I  +    L +    L L NN F
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 35/243 (14%), Positives = 64/243 (26%), Gaps = 51/243 (20%)

Query: 80  TSLQVLYASSNELTGNISPG-LCELVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDVSD 137
            S Q L      L   I       L  +  +++  +     L      NL+ +  +++ +
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 138 NQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYN 197
            +    I    L  L  ++ L + N      P  L  +++       +        +   
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEI-------TDNP 141

Query: 198 SLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVE------NN 251
            +T             I    F             +   L L     N          N 
Sbjct: 142 YMT------------SIPVNAFQGL--------CNETLTLKLYN---NGFTSVQGYAFNG 178

Query: 252 ANLERLLLADNSLFGSFWMPIHSH------QKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305
             L+ + L  N         I            + LDVS       +P +   +L  L+ 
Sbjct: 179 TKLDAVYLNKNKYLTV----IDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIA 233

Query: 306 LNL 308
            N 
Sbjct: 234 RNT 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 316 SIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NL 373
           ++P S  +   +L   D+S+N L+    E    R  +L  L LS+N L   I SE F  +
Sbjct: 32  NVPQSLPSYTALL---DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 374 TNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
            NL  L L  N        +   L     LE L L +NH+         +++ L+ + + 
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQA---LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 431 NNNLEGPIPIE----FCQLNSLKILDLSNNSIFRTLPSCFSPAS---IEQLHLSKN 479
            N +    P+E      +L  L +LDLS+N + +   +            L+L  N
Sbjct: 145 QNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF--NLTNLMTLQLDGNKFT 387
           +  S  QL   +P+ + +      +L LS+N+L   + +E     LTNL +L L  N   
Sbjct: 23  LSCSKQQLP-NVPQSLPS---YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLN 446
               E+      L  L LS NHL         +L ALE +++ NN++   +    F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMA 136

Query: 447 SLKILDLSNNSIFRTLPSCFSP----ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSC 502
            L+ L LS N I R              +  L LS NK++    + +   P  V   L  
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL-- 194

Query: 503 NSLHG 507
             LH 
Sbjct: 195 -YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 74  WCLANMTSLQVLYASSNELTGNISPG-LCELVLMRELHIDNNDLRGSLP-LCLANLTSLR 131
           W    +T+L  L  S N L   IS      +  +R L + +N L  +L     ++L +L 
Sbjct: 58  WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALE 115

Query: 132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164
           VL + +N +   +  +    +  +++L LS N 
Sbjct: 116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQ 147

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSN 90
            +L  L L ++  N I  +    + +L+ L +    L  +L     +++ +L+VL   +N
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN 122

Query: 91  ELTGNISPG-LCELVLMRELHIDNNDLRGSLP----LCLANLTSLRVLDVSDNQLTQNIS 145
            +   +      ++  +++L++  N +    P         L  L +LD+S N+L   + 
Sbjct: 123 HIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179

Query: 146 SSPLMHLTSI--EELILSNNHF 165
            + L  L +     L L NN  
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 403 LYLSDNHLTGEIPRW-LGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLSNNSIFR 460
           L LS N+L+     W    L+ L  +++ +N+L   I  E F  + +L+ LDLS+N +  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHL-H 101

Query: 461 TLPS-CFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513
           TL    FS   ++E L L  N I     +   D   L  L LS N +    P ++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 52  LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPG-LCELVLMRELH 110
             +L +L  L +    L          + +L+ L  SSN L   +      +L  +  L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILSNNHFFQ 167
           + NN +         ++  L+ L +S NQ+++            L  +  L LS+N    
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL-- 175

Query: 168 SPISLEPLFNLSK 180
             + L  L  L  
Sbjct: 176 KKLPLTDLQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 80  TSLQVLYASSNELTGNISPG--LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD 137
           +   +L  S N L+  +        L  +  L + +N L          + +LR LD+S 
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 138 NQLTQNISSSPLMHLTSIEELILSNNH 164
           N L   +       L ++E L+L NNH
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNH 123

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 57/291 (19%), Positives = 101/291 (34%), Gaps = 62/291 (21%)

Query: 249 ENNANLERLLLADNSL-------FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYL- 300
             + +++ ++L+ N++              I S + L   + S+ F  G +  EI   L 
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFSDIFT-GRVKDEIPEALR 84

Query: 301 ---------PGLMDLNLSRNAFNGSIPSSFADM----KMLERVDISYNQLTGE------- 340
                    P L  + LS NAF  +      D       LE + +  N L  +       
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 341 -----IPERMAARCFSLEILALSNNSLQ---GHIFSEKF-NLTNLMTLQLDGNKFTGE-- 389
                   + A     L  +    N L+      +++ F +   L T+++  N    E  
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 390 ---ILESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNL--EGPIPI 440
              +LE L+ C  L+ L L DN  T      +   L +   L ++ + +  L   G   +
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 441 ----EFCQLNSLKILDLSNNSI----FRTLPSCF--SPASIEQLHLSKNKI 481
                  +   L+ L L  N I     RTL +        +  L L+ N+ 
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 54/240 (22%)

Query: 303 LMDLNLSRNAFNG----SIPSSFADMKMLERVDISYNQLTGEIPERMA---ARCFSLEIL 355
           +   +L  +A       S+ +   +   ++ + +S N +  E    ++   A    LEI 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE-- 413
             S+    G +  E               +    +L++L KC  L  + LSDN       
Sbjct: 66  EFSDIFT-GRVKDE-------------IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 414 --IPRWLGNLSALEDIIMPNNNL-------------EGPIPIEFCQLNSLKILDLSNNSI 458
             +  +L   + LE + + NN L             E  +  +      L+ +    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 459 F--------RTLPSCFSPASIEQLHLSKNKI-----EGRLESIIHDSPHLVTLDLSCNSL 505
                    +T  S      +  + + +N I     E  L   +     L  LDL  N+ 
Sbjct: 172 ENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 23/184 (12%)

Query: 3   KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQEL 61
              N    ++G+  V        +V + +  L  +   N   + I    G++   +L+EL
Sbjct: 17  GLANAVKQNLGKQSVT------DLVSQKE--LSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 62  YIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLP 121
           ++    +    P  L ++T L+ L  + N L  N++  +    L   L +DNN+LR +  
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNG-IPSACL-SRLFLDNNELRDTDS 123

Query: 122 LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKR 181
           L   +L +L +L + +N+L    S   L  L+ +E L L  N       +   L  L K 
Sbjct: 124 L--IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEI----TNTGGLTRLKKV 174

Query: 182 KTFD 185
              D
Sbjct: 175 NWID 178

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 15/184 (8%)

Query: 322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQL 381
             +    + ++    +T  + +        ++     N+++Q    +     TNL  L L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 382 DGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE 441
             N+ +   L  L     LE L ++ N L   +   + +   L  + + NN L     + 
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDSLI 125

Query: 442 FCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLS 501
              L +L+IL + NN + +++      + +E L L  N+I       +     +  +DL+
Sbjct: 126 --HLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 502 CNSL 505
               
Sbjct: 181 GQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQE 60
            + F NL+ L +   Q+  + S L    +    L+ LS+   ++N + +        L  
Sbjct: 59  MQFFTNLKELHLSHNQI-SDLSPL----KDLTKLEELSV---NRNRLKNLNGIPSACLSR 110

Query: 61  LYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSL 120
           L++   +LR +    L ++ +L++L   +N+L  +I   L  L  +  L +  N++  + 
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTG 166

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
            L    L  +  +D++  +            +    EL ++N 
Sbjct: 167 GL--TRLKKVNWIDLTGQKCVNE-------PVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 31/229 (13%)

Query: 248 VENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
               AN  +  L   S+  +  +       +   +  N+  +    ++   +   L +L+
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQ---FFTNLKELH 69

Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA------------------ARC 349
           LS N    S  S   D+  LE + ++ N+L        A                     
Sbjct: 70  LSHN--QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHL 127

Query: 350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNH 409
            +LEIL++ NN L+         L+ L  L L GN+ T      L++   +  + L+   
Sbjct: 128 KNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQK 183

Query: 410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
              E  ++   L     +  P+     P  I      S     +     
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
              + +          +T ++     EL  ++  + DN++++ SL   +   T+L+ L +
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNH 164
           S NQ++     SPL  LT +EEL ++ N 
Sbjct: 71  SHNQIS---DLSPLKDLTKLEELSVNRNR 96

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQ 59
            +    LE L +             + G     L  L L     N + D   L  L +L+
Sbjct: 81  LKDLTKLEELSVN------RNRLKNLNGIPSACLSRLFL---DNNELRDTDSLIHLKNLE 131

Query: 60  ELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS 119
            L I    L+ S+   L  ++ L+VL    NE+T N    L  L  +  + +        
Sbjct: 132 ILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNE 187

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSS 147
                  L     +   D +       S
Sbjct: 188 PVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 34/254 (13%), Positives = 78/254 (30%), Gaps = 46/254 (18%)

Query: 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKT 183
              L +    ++    +T          L+ ++     N++      SL  +   +  K 
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNI----QSLAGMQFFTNLKE 67

Query: 184 FDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG-K 242
                       +N ++    L+ +                   DL    L  L+++  +
Sbjct: 68  LH--------LSHNQIS---DLSPLK------------------DLTK--LEELSVNRNR 96

Query: 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG 302
             N     +A L RL L +N L       +   + L  L + NN  +    + +  +L  
Sbjct: 97  LKNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKS---IVMLGFLSK 151

Query: 303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSL 362
           L  L+L  N    +       +K +  +D++  +   E  +       +  +       +
Sbjct: 152 LEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 363 QGHIFSEKFNLTNL 376
             +  S   +  + 
Sbjct: 210 SPYYISNGGSYVDG 223

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 54/325 (16%), Positives = 107/325 (32%), Gaps = 34/325 (10%)

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSF 268
           S   Y          +      +       LS  F   L   +     LL+ D +     
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 269 WMPIHSHQKLATLDVSNNFFRG-------HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 321
           W       + + + + +            H    I T      +  L ++          
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDS 345

Query: 322 ADMKMLERVDISYNQLT---------GEIPERMAARCFSLEILALSNNSLQGHIFSEKF- 371
           A  + L R ++S  + T          E+ E      + L  + L   +L   ++ ++  
Sbjct: 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 372 -NLTNLMTL--------QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLS 422
              + L  +            +KF  E      +   +  L+L+   LT  +   L  L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLL 463

Query: 423 ALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIE 482
            +  + + +N L   +P     L  L++L  S+N++   +    +   +++L L  N+++
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCNNRLQ 521

Query: 483 GRLESIIHDS--PHLVTLDLSCNSL 505
               +I      P LV L+L  NSL
Sbjct: 522 Q-SAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
           L  +  +  L  S N L   + P L  L  +  L   +N L  ++   +ANL  L+ L +
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515

Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
            +N+L Q+ +  PL+    +  L L  N   Q     E L  +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 28  GESKPSLKFLSLINSSKN-TILDQGLRQLVHLQELYIGG---YDLRGSLPWCLANMTSLQ 83
                  + + L         +D  L  L   + L +       +       L+ M +L+
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLR 73

Query: 84  VLYASSNELTGNISPGLCELVLMRELHIDNN---DLRGSLPLCLANLTSLRVLDVSDNQL 140
           +L    N +   I         + EL I  N    L G     +  L +LRVL +S+N++
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKI 127

Query: 141 TQNISSSPLMHLTSIEELILSNN 163
           T       L  L  +E+L+L+ N
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
            L     L L  N    E + SLS    L  L L  N +  +I         LE++ +  
Sbjct: 46  TLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLHLSKNKIEGRLES-- 487
           N +     IE  +L +L++L +SNN I  +  +    +   +E L L+ N +    +   
Sbjct: 103 NQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 488 --------IIHDSPHLVTLD 499
                   ++   P+L  LD
Sbjct: 161 ATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 8/118 (6%)

Query: 32  PSLKFLSLINSSKNTILD-QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
            + K L+L   S N I     L  + +L+ L +G   ++  +    A   +L+ L+ S N
Sbjct: 48  KACKHLAL---STNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103

Query: 91  ELTGNISPGLCELVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDVSDNQLTQNISSS 147
           ++  ++S G+ +LV +R L++ NN +     +  LA L  L  L ++ N L  +   +
Sbjct: 104 QIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 389 EILESLSKCYLLE-GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLN 446
           E  +S+      +  L+     +  ++   L  L A + + +  NN+E    I     + 
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK---ISSLSGME 70

Query: 447 SLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           +L+IL L  N I +         ++E+L +S N+I   L  I     +L  L +S N +
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSGI-EKLVNLRVLYMSNNKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 24/164 (14%)

Query: 303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA--ARCFSLEILALSNN 360
            ++L+         + ++ + +K  + + +S N +     E+++  +   +L IL+L  N
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRN 80

Query: 361 SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT--GEIPRWL 418
            ++  I +       L  L +  N+     L  + K   L  LY+S+N +T  GEI + L
Sbjct: 81  LIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDK-L 136

Query: 419 GNLSALEDIIMPNNNLEGPIPIEFC----------QLNSLKILD 452
             L  LED+++  N L                   +L +LK LD
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 48/322 (14%), Positives = 89/322 (27%), Gaps = 64/322 (19%)

Query: 231 NADLSHLNLSG---------KFPNWLVENNANLERLLLADNSLFGSFWMPI-----HSHQ 276
            A ++ LNLSG         +    L    AN+  L L+ N L       +         
Sbjct: 50  PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109

Query: 277 KLATLDVSNNFFRGHIPVEIGTYL----PGLMDLNLSRNAFNGSIPSSFADM-----KML 327
            +  LD+  N F      E           +  LNL  N            +       +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 328 ERVDISYNQLTGE----IPERMAARCFSLEILALSNNSLQ---GHIFSE--KFNLTNLMT 378
             +++  N L  +    + + +A+   S+  L LS N L        +        ++++
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 379 LQLDGNKFTGE----ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
           L L  N   G     +         L+ +YL  + +          L A           
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA---------- 279

Query: 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA------SIEQLHLSKNKI-----EG 483
                  F  +  + ++D +   I  +     S          +   L    +       
Sbjct: 280 -------FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQ 332

Query: 484 RLESIIHDSPHLVTLDLSCNSL 505
                ++    L     +C  L
Sbjct: 333 TNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 44/300 (14%), Positives = 93/300 (31%), Gaps = 59/300 (19%)

Query: 247 LVENNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNFFRGHIPVEIGTYLP 301
                  +  L L+ N+L+    + +     ++   + +L++S N        E+   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 302 G----LMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGE----IPERMAAR 348
                +  LNLS N  +                 +  +D+ +N  + +      +  +  
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 349 CFSLEILALSNNSLQ---GHIFSE--KFNLTNLMTLQLDGNKFTGEILESLSKCYL---- 399
             S+  L L  N L         +       N+ +L L GN    +    L+K       
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 400 -LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
            +  L LS N L  +      + + L  I     N              +  L+L  N +
Sbjct: 197 SVTSLDLSANLLGLK------SYAELAYIFSSIPN-------------HVVSLNLCLNCL 237

Query: 459 FRTLPSCFSPA-----SIEQLHLSKNKI-----EGR--LESIIHDSPHLVTLDLSCNSLH 506
                            ++ ++L  + +     E    L +   +   ++ +D +   +H
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 39/219 (17%)

Query: 327 LERVDISYNQLTGE----IPERMAARCFSLEILALSNNSLQ---GHIFSE--KFNLTNLM 377
           +  +D+S N L       + +  A    S+  L LS NSL         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 378 TLQLDGNKFTGEILESLSK-----CYLLEGLYLSDNHLTGEIPRWLGNL-----SALEDI 427
           +L L GN  + +  + L K      + +  L L  N  + +             +++  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 428 IMPNNNLEGPIPIEFCQL-----NSLKILDLSNNSI--------FRTLPSCFSPASIEQL 474
            +  N+L      E  Q+      ++  L+L  N++         + L S   PAS+  L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 475 HLSKNKIEGR-----LESIIHDSPHLVTLDLSCNSLHGS 508
            LS N +  +              H+V+L+L  N LHG 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 50/336 (14%), Positives = 102/336 (30%), Gaps = 77/336 (22%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLM-----RELHIDNNDL--RGSLPLCLA--- 125
            +    +  L  S N L    +  L +           L++  N L  + S  L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 126 NLTSLRVLDVSDNQLT----QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKR 181
              ++  L++S N L+      +  +      +I  L L  N F  S  S          
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF--SSKSSSEF------ 129

Query: 182 KTFDSEICAETESHYNSLTPKFQLTFISLS----GYIDGGTFPKFLYHQHDLKNADLSHL 237
                    +  S+  +      +T ++L     G        + L        A+++ L
Sbjct: 130 --------KQAFSNLPA-----SITSLNLRGNDLGIKSSDELIQILAAI----PANVNSL 172

Query: 238 NLSGKFPNW------------LVENNANLERLLLADNSLFGSFWMPI-----HSHQKLAT 280
           NL G   N             L    A++  L L+ N L    +  +          + +
Sbjct: 173 NLRG---NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 281 LDVSNNFFRGHIPVEIGTYL---PGLMDLNLSRNAFNG-------SIPSSFADMKMLERV 330
           L++  N   G     +         L  + L  +           ++ ++F +++ +  V
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 331 DISYNQLTGE----IPERMAARCFSLEILALSNNSL 362
           D +  ++       I   +       ++ +L N  L
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 15/147 (10%)

Query: 316 SIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-L 373
            IP++    +  +    +  N +   IP    +    L  + LSNN +   +  + F  L
Sbjct: 25  EIPTNLPETITEI---RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGL 79

Query: 374 TNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWL-GNLSALEDIIM 429
            +L +L L GNK T     + E L     L+ L L+ N +   +      +L  L  + +
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFS---LQLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135

Query: 430 PNNNLEGPIPIEFCQLNSLKILDLSNN 456
            +N L+      F  L +++ + L+ N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 36/162 (22%)

Query: 252 ANLERLLLADNSL----FGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307
             +  + L  N++     G+F      ++KL  +D+SNN           + L       
Sbjct: 32  ETITEIRLEQNTIKVIPPGAF----SPYKKLRRIDLSNNQI---------SELA------ 72

Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF 367
                     P +F  ++ L  + +  N++T E+P+ +    FSL++L L+ N +   + 
Sbjct: 73  ----------PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLR 120

Query: 368 SEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
            + F +L NL  L L  NK       + S    ++ ++L+ N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 73  PWCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGSLPL-CLANLTSL 130
           P   +    L+ +  S+N+++  ++P   + L  +  L +  N +   LP      L SL
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL 106

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI-SLEPLFNLS 179
           ++L ++ N++   +       L ++  L L +N        +  PL  + 
Sbjct: 107 QLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI---- 458
           + L  N +    P        L  I + NN +    P  F  L SL  L L  N I    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 459 ---FRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511
              F  L       S++ L L+ NKI         D  +L  L L  N L  +I  
Sbjct: 97  KSLFEGLF------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSN 90
             L+ + L N+  + +     + L  L  L + G  +   LP      + SLQ+L  ++N
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN 114

Query: 91  ELTGNISPGL-CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
           ++   +      +L  +  L + +N L+       + L +++ + ++ N
Sbjct: 115 KIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339
            L ++NN F       I   LP L  +N S N        +F     +  + ++ N+L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 340 EIPERMAARCFSLEILALSNN---SLQGHIFSEKFNLTNLMTLQLDGNKFT---GEILES 393
            +  +M     SL+ L L +N    +    F     L+++  L L  N+ T       ++
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 394 LSKCYLLEGLYLSDN 408
           L     L  L L  N
Sbjct: 152 LHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTG 388
           VD S  +L  +IPE +         L L+NN       +  F  L  L  +    NK T 
Sbjct: 16  VDCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71

Query: 389 ---EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQ 444
                 E  S    +  + L+ N L     +    L +L+ +++ +N +   +  + F  
Sbjct: 72  IEEGAFEGASG---VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIG 127

Query: 445 LNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKN 479
           L+S+++L L +N I    P  F    S+  L+L  N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKF 386
             + ++ N+ T      +  +   L  +  SNN +   I    F   + +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 387 T---GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
                ++ + L     L+ L L  N +T         LS++  + + +N +    P  F 
Sbjct: 94  ENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 444 QLNSLKILDLSNN 456
            L+SL  L+L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 32  PSLKFLSLINSSKNTILDQGL-RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN 90
                L L N+    +   G+ ++L  L+++      +           + +  +  +SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 91  ELTGNISPGLCE-LVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDVSDNQLTQNISSSP 148
            L  N+   + + L  ++ L + +N +   +       L+S+R+L + DNQ+   ++   
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGA 148

Query: 149 LMHLTSIEELILSNNHF 165
              L S+  L L  N F
Sbjct: 149 FDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 442 FCQLNSLKILDLSNNSIFRTLPSCFSPAS-IEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
           F +L  L+ ++ SNN I       F  AS + ++ L+ N++E     +      L TL L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 501 SCNSLHGSIPN 511
             N +   + N
Sbjct: 113 RSNRIT-CVGN 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ-- 363
           L+L          ++F  +  L  +++ YNQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 364 -GHIFSEKFNLTNLMTLQLDGNKFTG---EILESLSKCYLLEGLYLSDNHLTGEIPRWLG 419
              +F    +LT L  L L GN+       + + L+K   L+ L L+ N L   IP   G
Sbjct: 99  PLGVFD---HLTQLDKLYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPA--G 149

Query: 420 ---NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
               L+ L+ + +  N L+      F +L  L+ + L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRN 311
           A+ E+L L    L            KL  L++  N  +  +   +   L  L  L L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 312 AFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ----GHI 366
               S+P   F  +  L+++ +  NQL   +P  +  R   L+ L L+ N LQ    G  
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-A 150

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
           F     LTNL TL L  N+       +  +   L+ + L  N
Sbjct: 151 FD---KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 54  QLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELHI 111
            L  L  L +    L  SLP     ++T L  LY   N+L   +  G+ + L  ++EL +
Sbjct: 81  DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRL 138

Query: 112 DNNDLRGSLPL-CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           + N L+ S+P      LT+L+ L +S NQL Q++       L  ++ + L  N F
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 59  QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL-CELVLMRELHIDNNDLR 117
           ++L +    L          +T L  L    N+L   +S G+  +L  +  L + NN L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 118 GSLPLCL-ANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
            SLPL +  +LT L  L +  NQL +++ S     LT ++EL L+ N  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL 143

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 53/381 (13%), Positives = 112/381 (29%), Gaps = 36/381 (9%)

Query: 2   RKFKNLEHLDMGE-VQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVH--- 57
              + ++ L M E    + +  +L  + +   SL+ L+   +    I  + L  +     
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 58  -LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDL 116
            L  + +G +++   L        +L+     S      +      LV  R+L       
Sbjct: 221 SLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 117 RG--SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEP 174
            G   +P+       +R LD+    L      + +    ++E L   N         LE 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI---GDRGLEV 336

Query: 175 LFNLSKR-KTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
           L    K+ K    E  A+ +   +      Q   I+L+                +L+   
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA------------QGCQELEYMA 384

Query: 234 LSHLNLSGKFPNWLVENNANLERL---------LLADNSLFGSFWMPIHSHQKLATLDVS 284
           +   +++ +    +     NL             + D  L       +   +KL      
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 285 NN--FFRGHIPVEIGTYLPGLMDLNLSRNAF-NGSIPSSFADMKMLERVDISYNQLTGEI 341
                        IG Y P +  + L      +  +         L+++++     +   
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 342 PERMAARCFSLEILALSNNSL 362
                 +  SL  L +     
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRA 525

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 50  QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109
                 V  +EL + GY +   +    A +     +  S NE+   +  G   L  ++ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
            ++NN +          L  L  L +++N L +     PL  L S+  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
           N      L L G K    I    +     + +  SDN +  ++      L  L+ +++ N
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLHLSKN---KIEGRLE 486
           N +          L  L  L L+NNS+     L    S  S+  L + +N     +    
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133

Query: 487 SIIHDSPHLVTLD 499
            +I+  P +  LD
Sbjct: 134 YVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLH 475
             N     ++ +    +   I      L+    +D S+N I      P       ++ L 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLL---RRLKTLL 70

Query: 476 LSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
           ++ N+I    E +    P L  L L+ NSL
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSL 100

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 53/381 (13%), Positives = 123/381 (32%), Gaps = 40/381 (10%)

Query: 2   RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQEL 61
             + +L  L++  +  +V+ S L+ +    P+LK L L  +     L   L++   L+EL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240

Query: 62  YIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLP 121
             GGY                        ++   +S  L     +R L    + +   LP
Sbjct: 241 GTGGYTAE------------------VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 122 LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN-------HFFQSPISLEP 174
              +  + L  L++S   +        L     ++ L + +            +   L  
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342

Query: 175 LFNLSKRKTFDSEICAE-TESHYNSLTPKF-QLTFISLSGY-IDGGTFPKFLYHQHDLKN 231
           L  +   + F  E     TE    S++    +L  +      +          ++ ++  
Sbjct: 343 L-RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 232 ADLSHLNLSGKFPNW----------LVENNANLERLLLADNSLFGSFWMPIHSHQKLATL 281
             L  +                   +VE+  +L RL L+       F       +K+  L
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEML 461

Query: 282 DVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAF-NGSIPSSFADMKMLERVDISYNQLTGE 340
            V+           + +    L  L +    F + ++ ++ + ++ +  + +S   ++  
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

Query: 341 IPERMAARCFSLEILALSNNS 361
             + +  +   L +  +    
Sbjct: 522 ACKLLGQKMPKLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 46/292 (15%), Positives = 91/292 (31%), Gaps = 35/292 (11%)

Query: 234 LSHLNLSGKFPNW-------LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
           L  LN+S             LV    NL+ L L            +    +L  L     
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 287 FFRGHIPVEIG-----TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEI 341
                  V  G     +    L  L+   +A    +P+ ++    L  +++SY  +    
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 342 PERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG---------NKFTGEILE 392
             ++  +C  L+ L + +      +        +L  L++              T + L 
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 393 SLSK-CYLLEGLYLSDNHLTGEIPRWLG-NLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
           S+S  C  LE +      +T      +  N   +    +     + P  +      +L+ 
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL------TLEP 419

Query: 451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSC 502
           LD+   +I            + +L LS    +   E I   +  +  L ++ 
Sbjct: 420 LDIGFGAIVEHCK------DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 37/282 (13%), Positives = 82/282 (29%), Gaps = 36/282 (12%)

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
            +   N     P  ++     +  + L     F  F +            +         
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE-------- 98

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD-MKMLERVDISY-NQLTGEIPERMAARCF 350
              + +    L ++ L R           A   K  + + +S     + +    +AA C 
Sbjct: 99  --AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156

Query: 351 SLEILALSNNSLQG----HIFSEKFNLTNLMTLQLDG--NKFTGEILESLSK-CYLLEGL 403
           +L+ L L  + +       +       T+L++L +    ++ +   LE L   C  L+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 404 YLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463
            L+      ++   L     LE++                       +    +       
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELG-----------TGGYTAEVRPDVYSGLSVALSGCK 265

Query: 464 SCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505
                  +  L    + +   L ++      L TL+LS  ++
Sbjct: 266 E------LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 372 NLTNLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
             +++  L LD ++   G++     +   LE L   +  LT  I   L  L+ L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 431 NNNLEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLHLSKN---KIEGRL 485
           +N + G + +   +  +L  L+LS N I    T+       +++ L L       +    
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 486 ESIIHDSPHLVTLD 499
           E++    P L  LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 48  LDQGLRQLVHLQELYIGGYDL-RGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106
           L+   R    ++EL +       G L         L+ L   +  LT +I+  L +L  +
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKL 66

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
           ++L + +N + G L +      +L  L++S N++    +  PL  L +++ L L N 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 420 NLSALEDIIMPNN-NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSK 478
             S ++++++ N+ + EG +     +   L+ L   N  +  ++ +      +++L LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSD 73

Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSL 505
           N++ G LE +    P+L  L+LS N +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 27/133 (20%)

Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
           ++ + +  ++      E +      LE L+  N  L                        
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------------------------ 54

Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQL 445
               + +L K   L+ L LSDN ++G +         L  + +  N ++    IE   +L
Sbjct: 55  --TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112

Query: 446 NSLKILDLSNNSI 458
            +LK LDL N  +
Sbjct: 113 ENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 305 DLNLSRNAFN-GSIPSSFADMKMLERVDISYNQLT--GEIPERMAARCFSLEILALSNNS 361
           +L L  +  N G +     + + LE +      LT    +P     +   L+ L LS+N 
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLELSDNR 75

Query: 362 LQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSDNHLT 411
           + G +        NL  L L GNK      +E L K   L+ L L +  +T
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 67/427 (15%), Positives = 123/427 (28%), Gaps = 126/427 (29%)

Query: 155 IEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI 214
           +EE++  N  F  SPI  E        + +  +     +  YN                 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR----DRLYN----------------- 121

Query: 215 DGGTFPKFLYH------QHDLKNADLSHL----NL-------SGKFPNWLVENNANLERL 257
           D   F K  Y+         L+ A L  L    N+       SGK   W+  +     ++
Sbjct: 122 DNQVFAK--YNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKV 176

Query: 258 LLADNSLFGSFWMPI-HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG- 315
               +  F  FW+ + + +     L++                    +D N +  + +  
Sbjct: 177 QCKMD--FKIFWLNLKNCNSPETVLEMLQKLLY-------------QIDPNWTSRSDHSS 221

Query: 316 SIPSSFADMKMLERVDISYNQL-----------TGEIPERMAARCFSLEILALSNNS--- 361
           +I      ++   R  +                  +        C   +IL  +      
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVT 278

Query: 362 ------LQGHIFSEKFN--LTNLMTLQLDGNKFTGEILESLSK---------CYLLEGLY 404
                    HI  +  +  LT      L   K+     + L +           ++    
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSII-AES 336

Query: 405 LSDNHLTGEIPRWLG-NLSALEDII-MPNNNLEGPIPIEFCQL-NSLKILDLSNN----- 456
           + D   T +   W   N   L  II    N LE   P E+ ++ + L +   S +     
Sbjct: 337 IRDGLATWD--NWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 457 -SIFRTLPSCFSPASI-EQLH----LSKNKIEGRLESIIHDSPHLVTLDLSCN-----SL 505
            S+            +  +LH    + K   E  +   I      + L+L        +L
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPS----IYLELKVKLENEYAL 445

Query: 506 HGSIPNQ 512
           H SI + 
Sbjct: 446 HRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 80/297 (26%)

Query: 96  ISPGLCELV--LMRE--------LHIDNNDLRGSLPLCLANLT---------SLRVL--D 134
            +P    ++   +R+         H++ + L   +   L  L           L V    
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 135 VSDNQLTQNISSSPLMHL-----TSIEELILS--------NNHFFQSPISLEPLFNLSKR 181
                   +I +  L  +      S   ++++             +S IS+  ++ L  +
Sbjct: 385 A-------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELK 436

Query: 182 KTFDSEICAETESH------YNSLT--PKFQLTFISLSGYIDGGTFPKFLYHQHDLKNAD 233
              ++    E   H      YN         L    L  Y     +    +H   LKN +
Sbjct: 437 VKLEN----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----YSHIGHH---LKNIE 485

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATL-DVSNNFFRGHI 292
                    F    + +   LE+ +  D     + W    S   L TL  +   F++ +I
Sbjct: 486 HPE--RMTLFRMVFL-DFRFLEQKIRHD----STAWNASGS--ILNTLQQL--KFYKPYI 534

Query: 293 PVEIGTYLPGLMDL-NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAAR 348
                 Y   +  + +         I S + D+     + I+       I E  A +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDL-----LRIALMAEDEAIFE-EAHK 585

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ----GHIFSEKFNLTNLMTLQLDG 383
           + + +  NQ+T ++   +     +L+ L L +N L     G +F     LT L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 384 NKFTG---EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI 440
           N+ T     + + L     L+ L++  N LT E+PR +  L+ L  + +  N L+     
Sbjct: 98  NQLTVLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153

Query: 441 EFCQLNSLKILDLSNN 456
            F +L+SL    L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SL 362
           L L  N      P  F  +  L+ + +  NQL   +P  +      L +L L  N    L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLS 422
              +F     L +L  L +  NK T E+   + +   L  L L  N L          LS
Sbjct: 104 PSAVFD---RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 423 ALEDIIMPNN 432
           +L    +  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 53  RQLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSNELTGNISPGLCE-LVLMRELH 110
             L++L+ELY+G   L  +LP     ++T L VL   +N+LT  +   + + LV ++EL 
Sbjct: 61  DSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF 118

Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
           +  N L   LP  +  LT L  L +  NQL ++I       L+S+    L  N
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447
           + L  L     L  LY+ +      +    L  L  L ++ +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 448 LKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
           L  L+LS N++           S+++L LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 27/117 (23%)

Query: 50  QGLRQLVHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSNELTGNISPGLCELVLMRE 108
             L    +L ELYI        L    L  +  L+ L    + L   ++P          
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA-------- 75

Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
                                L  L++S N L   +S   +  L S++EL+LS N  
Sbjct: 76  ---------------FHFTPRLSRLNLSFNALES-LSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 13/102 (12%)

Query: 316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SLQGHIFSEKFN 372
                    + L  + I   Q    +  R       L  L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 373 LTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLT 411
              L  L L  N       + ++ LS    L+ L LS N L 
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLS----LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 438 IPIEFCQLNSLKILDLSNNSIFRTLPS-CFSP-ASIEQLHLSKNKIEGRLESIIHDSPHL 495
                    +L  L + N    + L          +  L + K+ +        H +P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 496 VTLDLSCNSLHGSIPNQIGRLP 517
             L+LS N+L       +  L 
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS 104

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 372 NLTNLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430
               +  L LD  K   G+I    ++   LE L L +  L   +   L  L  L+ + + 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 431 NNNLEGPIPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLHLSKN---KIEGRL 485
            N + G + +   +L +L  L+LS N +    TL        ++ L L       +    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 486 ESIIHDSPHLVTLD 499
           ES+    P L  LD
Sbjct: 140 ESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 43  SKNTILDQGLRQLVHLQELYIGGYDLR-GSLPWCLANMTSLQVLYASSNELTGNISPGLC 101
            +   L+   R    ++EL +       G +    A   +L+ L   +  L  ++S  L 
Sbjct: 11  KRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLP 68

Query: 102 ELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILS 161
           +L  +++L +  N + G L +    L +L  L++S N+L    +  PL  L  ++ L L 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 162 NN 163
           N 
Sbjct: 129 NC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 420 NLSALEDIIMPNN-NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSK 478
             +A+ ++++ N  + +G I     +  +L+ L L N  +  ++ +      +++L LS+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSE 80

Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSL 505
           N+I G L+ +    P+L  L+LS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 299 YLPGLMDLNLSRNAFN-GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357
               + +L L     N G I    A+   LE + +    L   +      +   L+ L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNL--PKLPKLKKLEL 78

Query: 358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSDNHLT 411
           S N + G +      L NL  L L GNK      LE L K   L+ L L +  +T
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 59  QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLC-ELVLMRELHIDNNDLR 117
            ELY+ G      +P  L+N   L ++  S+N ++  +S      +  +  L +  N LR
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 118 GSLPL-CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
             +P      L SLR+L +  N +   +       L+++  L +  N
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SL 362
           L L  N F   +P   ++ K L  +D+S N+++  +  +  +    L  L LS N    +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 363 QGHIFSEKFNLTNLMTLQLDGNK 385
               F     L +L  L L GN 
Sbjct: 94  PPRTFD---GLKSLRLLSLHGND 113

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 4e-06
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 29/198 (14%)

Query: 246 WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGT-YLPGLM 304
            +++    L  L +   +   +  +       L +L++ +      +  +I    LP L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG 364
            L L     +          + L                    R  +L+ L + +   Q 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFS----------------KDRFPNLKWLGIVDAEEQN 266

Query: 365 HI---FSEKFNLTNLMTLQLDGNKFTGE----ILESLSKCYLLEGLYLSDNHLTGEIPRW 417
            +   F E   L  L T+ +     T E    +L+ + K   L+ + +  N+L+ E+ + 
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326

Query: 418 LGNLSALEDIIMPNNNLE 435
           L    +L   I  +++ E
Sbjct: 327 LQ--KSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 19/152 (12%)

Query: 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG--NLSALE--DII 428
           L  +  L     K T  +         L+ L +    L   +   +   +L  LE   + 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 429 MPNNNLEGPIPIEF-------CQLNSLKILDLSNNSIFRTLPSCFSPASI----EQLHLS 477
           +   +      +          +  +LK L + +      +   F  + I    E + +S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 478 KNKIEGR----LESIIHDSPHLVTLDLSCNSL 505
              +       L   +    HL  +++  N L
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 6   NLEHLDMGEVQVDVNTSFLQIVGESK-PSLKFLSLINSSKNTILDQGLRQLVHLQELYIG 64
           NL+ L++  +   +  S ++ +  S  P+L+ L L    ++   D  +     L      
Sbjct: 194 NLKSLEI--ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------ 245

Query: 65  GYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM---RELHIDNNDLRGS-- 119
                    +      +L+ L     E    +     E  ++     + I    L     
Sbjct: 246 ---------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 120 --LPLCLANLTSLRVLDVSDNQLT 141
             L   +  +  L+ +++  N L+
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 17/122 (13%)

Query: 234 LSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293
           L  L L     ++  + + N+ R L + +               L  L + +   +  + 
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQNVVV 269

Query: 294 VEIGT--YLPGLMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIPERMAA 347
                   LP L  +++S           +      +K L+ +++ YN L+ E+ + +  
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

Query: 348 RC 349
             
Sbjct: 330 SL 331

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 19/136 (13%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN---SL 362
           L+L  N+        F ++  L ++ +  N+L   +P  +  +  SL  L LS N   SL
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS-----KCYLLEGLYLSDNHLTGEIPR- 416
              +F     LT L  L L+ N+     L+SL      K   L+ L L  N L   +P  
Sbjct: 92  PNGVFD---KLTQLKELALNTNQ-----LQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDG 142

Query: 417 WLGNLSALEDIIMPNN 432
               L++L+ I + +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRN 311
           A    L L  NSL             L  L +  N  +  +P  +   L  L  LNLS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86

Query: 312 AFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK 370
               S+P+  F  +  L+ + ++ NQL   +P+ +  +   L+ L L  N L+  +    
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGV 143

Query: 371 F-NLTNLMTLQLDGN 384
           F  LT+L  + L  N
Sbjct: 144 FDRLTSLQYIWLHDN 158

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 300 LPGLMDLNLSRNAFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358
           L  L  L L+ N    S+P+  F  +  L+ + +  NQL   +P+ +  +  +L  L L+
Sbjct: 84  LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141

Query: 359 NN---SLQGHIFSEKFNLTNLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNHLTG 412
           +N   SL   +F     LTNL  L L  N+       + + L++   L+ L L  N L  
Sbjct: 142 HNQLQSLPKGVFD---KLTNLTELDLSYNQLQSLPEGVFDKLTQ---LKDLRLYQNQLKS 195

Query: 413 EIPRWLG---NLSALEDIIMPNN 432
            +P   G    L++L+ I + +N
Sbjct: 196 -VPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 23/192 (11%)

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKF 386
            + ++    +T  + +       S++ +  +N+ ++     +    L N+  L L GNK 
Sbjct: 22  IKANLKKKSVTDAVTQNELN---SIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL 75

Query: 387 TG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 445
                L+ L+    L  L L+ N L          L+ L+++++  N L+      F +L
Sbjct: 76  HDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 446 NSLKILDLSNNSIFRTLPS-CF-SPASIEQLHLSKNKIEGRLESI---IHDS-PHLVTLD 499
            +L  L+L++N + ++LP   F    ++ +L LS N+    L+S+   + D    L  L 
Sbjct: 133 TNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQ----LQSLPEGVFDKLTQLKDLR 187

Query: 500 LSCNSLHGSIPN 511
           L  N L  S+P+
Sbjct: 188 LYQNQLK-SVPD 198

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 223 LYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLD 282
              +   +  DL+  NL       L+       R   +      +      S  ++  +D
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA---EHFSPFRVQHMD 99

Query: 283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISY-NQLTGEI 341
           +SN+         I +    L +L+L     +  I ++ A    L R+++S  +  +   
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 342 PERMAARCFSLEILALS------NNSLQGHIFSEKFNLTNLMTLQLDG--NKFTGEILES 393
            + + + C  L+ L LS         +Q  +         +  L L G         L +
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLST 216

Query: 394 LSK-CYLLEGLYLSD-NHLTGEIPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQLNSLKI 450
           L + C  L  L LSD   L  +  +    L+ L+ + +    ++     +E  ++ +LK 
Sbjct: 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276

Query: 451 LDLSN 455
           L +  
Sbjct: 277 LQVFG 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 27/184 (14%)

Query: 5   KNLEHLDMGEVQV-DVNTSFL-QIVGESKPSLKFLSLINSSKNTILDQGLRQLV----HL 58
            +L  L++  V++  V  + +  ++G  + +L  ++L   +   +   GLR L+      
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL---ASCQLDPAGLRTLLPVFLRA 128

Query: 59  QELYIGGYDLRGSLPWCLA-----NMTSLQVLYASSNELTGN----ISPGLCELVLMREL 109
           ++L +    L       L      +   +  L  S+N LT      +  GL     +  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 110 HIDNNDLR--GSLPLC--LANLTSLRVLDVSDNQLT----QNISSSPLMHLTSIEELILS 161
            + +  L   G   L   L     L+ L+V+ N         ++ +      S+E L L 
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLY 247

Query: 162 NNHF 165
            N  
Sbjct: 248 FNEL 251

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 18/114 (15%)

Query: 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG---HIFSEKFNLTNLMTLQLDGN 384
             + ++ N+L     + +  R   L  L L  N L G   + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE---GASHIQELQLGEN 88

Query: 385 KFT---GEILESLSKCYLLEGLYLSDNHLTGEIPRWLG---NLSALEDIIMPNN 432
           K      ++   L +   L+ L L DN ++  +    G   +L++L  + + +N
Sbjct: 89  KIKEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 24/121 (19%)

Query: 306 LNLSRNAFNGSIPSS--FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
           L L+ N     I S   F  +  L ++++  NQLT  I          ++ L L  N ++
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 364 ---GHIFSEKFNLTNLMTLQLDGNKFTG------EILESLSKCYLLEG--------LYLS 406
                +F     L  L TL L  N+ +       E L SL+   L            + +
Sbjct: 92  EISNKMFL---GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 407 D 407
           +
Sbjct: 149 E 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 78  NMTSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGSLPL-CLANLTSLRVLDV 135
            +  L  L    N+LT  I P   E    ++EL +  N ++  +       L  L+ L++
Sbjct: 52  RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHF 165
            DNQ+   +      HL S+  L L++N F
Sbjct: 110 YDNQI-SCVMPGSFEHLNSLTSLNLASNPF 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.42
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.22
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	81.06

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5e-57  Score=472.74  Aligned_cols=501  Identities=29%  Similarity=0.377  Sum_probs=269.8

Q ss_pred             CCCCCcCceeeCCCccccccccchh--hccCCCCcceEEeccccccCC-cchhhhhhcccCcEEEecCCcccCCcccc--
Q 042271            1 FRKFKNLEHLDMGEVQVDVNTSFLQ--IVGESKPSLKFLSLINSSKNT-ILDQGLRQLVHLQELYIGGYDLRGSLPWC--   75 (517)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--   75 (517)
                      |+++++||+|++++|  .+.+.++.  . ++++++|++|++++|.+.. ++...+.++++|++|++++|.+.+..+..  
T Consensus        96 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  172 (768)
T 3rgz_A           96 FKCSASLTSLDLSRN--SLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV  172 (768)
T ss_dssp             CCCCTTCCEEECCSS--EEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred             hccCCCCCEEECCCC--cCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence            456777888888877  55555554  3 6777777777777555432 22212245556666666665555444433  


Q ss_pred             -cc----------------------CCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcE
Q 042271           76 -LA----------------------NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRV  132 (517)
Q Consensus        76 -l~----------------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  132 (517)
                       +.                      .+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|.++..+++|++
T Consensus       173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  251 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL  251 (768)
T ss_dssp             HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred             hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence             33                      445555555555555544443 555555555555555555555555555555555


Q ss_pred             EeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccc
Q 042271          133 LDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG  212 (517)
Q Consensus       133 L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  212 (517)
                      |++++|.+.+.++.  . .+++|++|++++|.+. +.........++.|+.+++............+....+|+++++.+
T Consensus       252 L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~-~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          252 LNISSNQFVGPIPP--L-PLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             EECCSSCCEESCCC--C-CCTTCCEEECCSSEEE-ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             EECCCCcccCccCc--c-ccCCCCEEECcCCccC-CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            55555555433332  1 3444444444444421 011101111123344444433222222122222223344444444


Q ss_pred             cccCCCcccc-ccccCCcCEeeccCCcCCCCCChhhhhc--------------------------ccccceEeccCCccC
Q 042271          213 YIDGGTFPKF-LYHQHDLKNADLSHLNLSGKFPNWLVEN--------------------------NANLERLLLADNSLF  265 (517)
Q Consensus       213 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~  265 (517)
                      |.+.+.+|.. +..+++|+.|++++|.+.+.+|..+...                          +++|++|++++|.+.
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence            4333333322 3333344444444443333333332111                          234444444444444


Q ss_pred             CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhH
Q 042271          266 GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM  345 (517)
Q Consensus       266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~  345 (517)
                      +..+..+..+++|+.|++++|.+++.+|..+.. +++|+.|++++|.+.+.++..+..+++|++|++++|.+.+.+|.. 
T Consensus       408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-  485 (768)
T 3rgz_A          408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-  485 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-
T ss_pred             cccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-
Confidence            444445555566666666666655555555444 556666666666666556666666666666666666665444433 


Q ss_pred             HhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchh--------
Q 042271          346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW--------  417 (517)
Q Consensus       346 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------  417 (517)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..        
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            334666666666666666555666666666666666666666566666666666666666666655443332        


Q ss_pred             --------------------------------------------------------------hcCCCCCcEEECCCCccc
Q 042271          418 --------------------------------------------------------------LGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       418 --------------------------------------------------------------~~~~~~L~~L~l~~~~~~  435 (517)
                                                                                    +..+++|+.|++++|++.
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                          222355666666666666


Q ss_pred             ccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       436 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      +.+|..+..+++|+.|++++|++++..|..+. +++|++|++++|++++.+|..|..+++|++|++++|+++|.+|.
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            66666666666777777777766666665554 66677777777777666666667677777777777777666665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-57  Score=473.94  Aligned_cols=448  Identities=29%  Similarity=0.327  Sum_probs=261.9

Q ss_pred             CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchh--hhhhcccCcEEEecCCcccCCccccc-c
Q 042271            1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQ--GLRQLVHLQELYIGGYDLRGSLPWCL-A   77 (517)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l-~   77 (517)
                      |..+++|+.++++.+  .+.. .+.. ++.+++|++|++++|.+....+.  .++++++|++|++++|.+.+..|..+ .
T Consensus        73 l~~L~~L~~l~~~~~--~~~~-l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           73 LLSLTGLESLFLSNS--HING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             TTTCTTCCEEECTTS--CEEE-CCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             HhccCcccccCCcCC--CcCC-Cchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            456788888888888  3322 3344 89999999999998887643333  78999999999999999987777665 8


Q ss_pred             CCCCCcEEEccCCccCCCCCcc---hhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCC
Q 042271           78 NMTSLQVLYASSNELTGNISPG---LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTS  154 (517)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~  154 (517)
                      ++++|++|++++|.+++..+..   +.++++|++|++++|.+++..+  +..+++|++|++++|.+.+.++.  +..+++
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~  224 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSA  224 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCS
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCC
Confidence            8999999999999988665554   5556666666666665554333  24555555555555555432222  455555


Q ss_pred             CceeecccCCCCCCCCCccccc----------------------CcccccccccccccccccccCCCCCc-ceeeEeecc
Q 042271          155 IEELILSNNHFFQSPISLEPLF----------------------NLSKRKTFDSEICAETESHYNSLTPK-FQLTFISLS  211 (517)
Q Consensus       155 L~~L~l~~~~~~~~~~~~~~l~----------------------~l~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~l~l~  211 (517)
                      |++|++++|.+..  .....+.                      .++.|+.+++............+... .+|++++++
T Consensus       225 L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls  302 (768)
T 3rgz_A          225 LQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS  302 (768)
T ss_dssp             CCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred             CCEEECcCCcCCC--cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence            5555555554311  0111233                      44555555555543332222223222 577788888


Q ss_pred             ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCC-cccEEEccCCcccc
Q 042271          212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQ-KLATLDVSNNFFRG  290 (517)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~  290 (517)
                      +|.+.+..|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+++
T Consensus       303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  382 (768)
T 3rgz_A          303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG  382 (768)
T ss_dssp             SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred             CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence            77777777777888888888888888877777776556778888888888877655555454444 55555555555544


Q ss_pred             cCChhhhh-ccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccc
Q 042271          291 HIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSE  369 (517)
Q Consensus       291 ~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  369 (517)
                      .++..+.. .+++|++|++++|.+++.++..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..
T Consensus       383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~  461 (768)
T 3rgz_A          383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQE  461 (768)
T ss_dssp             ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHH
Confidence            33333221 1334555555555544444555555555555555555554333332 223445555555555554444444


Q ss_pred             ccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCcc
Q 042271          370 KFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK  449 (517)
Q Consensus       370 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  449 (517)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|.++..+++|+.|++++|++.+.+|..+..+++|+
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            44455555555555554444444444455555555555554444444444445555555555544444444444444444


Q ss_pred             EEEccCCccc
Q 042271          450 ILDLSNNSIF  459 (517)
Q Consensus       450 ~L~l~~n~l~  459 (517)
                      .|++++|+++
T Consensus       542 ~L~Ls~N~l~  551 (768)
T 3rgz_A          542 WLDLNTNLFN  551 (768)
T ss_dssp             EEECCSSEEE
T ss_pred             EEECCCCccC
Confidence            4444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.5e-53  Score=433.09  Aligned_cols=494  Identities=19%  Similarity=0.165  Sum_probs=404.7

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      +++++|++++|  .+.+..+.. ++.+++|++|++++|.+..+.+.+|+++++|++|++++|.+.+..|..+.++++|++
T Consensus        33 ~~l~~L~Ls~n--~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFN--VLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTC--CCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCC--ccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            36899999999  555554544 889999999999999888887778999999999999999998778888999999999


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCc--eeeccc
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE--ELILSN  162 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~--~L~l~~  162 (517)
                      |++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+ +++..+..+++|+  +|++++
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTT
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCC
Confidence            9999999886556678899999999999999886544555568999999999998865 4444678888888  888888


Q ss_pred             CCCCCCCCCcccccCcccccccccccccc-----------------------------cccccCCCCCcceeeEeecccc
Q 042271          163 NHFFQSPISLEPLFNLSKRKTFDSEICAE-----------------------------TESHYNSLTPKFQLTFISLSGY  213 (517)
Q Consensus       163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-----------------------------~~~~~~~~~~~~~L~~l~l~~~  213 (517)
                      |.+........   ....++.+++.....                             ....+..+. ..+++.+++.++
T Consensus       189 n~l~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~-~~~L~~L~l~~n  264 (606)
T 3t6q_A          189 NDIAGIEPGAF---DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-EMSVESINLQKH  264 (606)
T ss_dssp             CCCCEECTTTT---TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG-GSEEEEEECTTC
T ss_pred             CccCccChhHh---hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh-cCceeEEEeecC
Confidence            87544332221   223344444433210                             001111111 127999999999


Q ss_pred             ccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCC
Q 042271          214 IDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP  293 (517)
Q Consensus       214 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  293 (517)
                      .+....+..+..+++|+.++++++.+. .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            888887888999999999999999988 666654 678999999999999988777788999999999999998876777


Q ss_pred             hhhhhccCCCcEEEccCCcCCCCC--chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccc-cc
Q 042271          294 VEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS-EK  370 (517)
Q Consensus       294 ~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~  370 (517)
                      ......+++|++|++++|.+.+..  +..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.+.+..+. .+
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence            665555899999999999988654  667899999999999999988 44555666799999999999999866543 48


Q ss_pred             cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCc---cchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271          371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE---IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS  447 (517)
Q Consensus       371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  447 (517)
                      ..+++|++|++++|.+....+..+..+++|++|++++|++.+.   .+..+..+++|+.|++++|.+.+..|..|..+++
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM  501 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence            8899999999999999877888899999999999999998752   2356889999999999999999888889999999


Q ss_pred             ccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          448 LKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       448 L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      |++|++++|++++..+..+. ++.| +|++++|.+++.++..|..+++|+.+++++|++++.++
T Consensus       502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999888777666 7888 99999999999999999999999999999999998876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-51  Score=425.51  Aligned_cols=502  Identities=20%  Similarity=0.140  Sum_probs=313.3

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      +++++|++++|  .+.+..+.. ++++++|++|+++++.+..+.+++++++++|++|++++|.+....+.+|.++++|++
T Consensus        25 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHN--QLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSS--CCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCC--CCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            47899999999  555544444 888999999999988888888778999999999999999998666667899999999


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcc--cCCCCCceeeccc
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL--MHLTSIEELILSN  162 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l--~~l~~L~~L~l~~  162 (517)
                      |++++|.+.+..+..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+ .+...+  ..+++|++|++++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCC
Confidence            9999998886666778999999999999999988888888899999999999998864 332233  2457888888888


Q ss_pred             CCCCCCCCC-cccccCc------------------------ccccccccccccccccccCCCCCcc--eeeEeecccccc
Q 042271          163 NHFFQSPIS-LEPLFNL------------------------SKRKTFDSEICAETESHYNSLTPKF--QLTFISLSGYID  215 (517)
Q Consensus       163 ~~~~~~~~~-~~~l~~l------------------------~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~  215 (517)
                      |.+...... +..+.++                        +.++.+++............+....  +|+.+++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            875332211 1111111                        2333333333222111111111111  255555555555


Q ss_pred             CCCccccccccCCcCEeeccCCcCCCCCChh--------------------------------hhhcccccceEeccCCc
Q 042271          216 GGTFPKFLYHQHDLKNADLSHLNLSGKFPNW--------------------------------LVENNANLERLLLADNS  263 (517)
Q Consensus       216 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--------------------------------~~~~~~~L~~L~l~~~~  263 (517)
                      ....+..+..+++|+.+++++|.+.+..+..                                .+..+++|++|++++|.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            4444455555555555555555544332222                                22345566666666666


Q ss_pred             cCCCcccccccCCcccEEEccCCcccc-cCChhhhhc--cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccc
Q 042271          264 LFGSFWMPIHSHQKLATLDVSNNFFRG-HIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE  340 (517)
Q Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~  340 (517)
                      +.+.....+..+++|++|++++|.+.. .++...+..  .++|+.|++++|.+++..+.++..+++|++|++++|.+.+.
T Consensus       341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  420 (680)
T 1ziw_A          341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE  420 (680)
T ss_dssp             BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred             cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence            655555556666666666666654321 111111111  24566666666766666666777778888888888877766


Q ss_pred             cchhHHhhcCCCcEEEccCCcccccccccc--------------------------cCCCCCcEEEccCcccccccchhh
Q 042271          341 IPERMAARCFSLEILALSNNSLQGHIFSEK--------------------------FNLTNLMTLQLDGNKFTGEILESL  394 (517)
Q Consensus       341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~~~~~~~  394 (517)
                      ++...+.++++|+.|++++|.+.+.....+                          ..+++|++|++++|.+....+..+
T Consensus       421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~  500 (680)
T 1ziw_A          421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML  500 (680)
T ss_dssp             CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence            666666667777777777776654443344                          444555555555555554444445


Q ss_pred             hhcccCCeEEecCCCCCCccc--------hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271          395 SKCYLLEGLYLSDNHLTGEIP--------RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       395 ~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      .++++|+.|++++|.+.+..+        ..+.++++|+.|++++|.+....+..|.++++|++|++++|+++...+..+
T Consensus       501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence            555555555555555542211        124555556666666665553333456666666666666666665555544


Q ss_pred             C-cccccEEEccCCcCCccchhhhc-CCCcccEEECCCCcCCCCCC
Q 042271          467 S-PASIEQLHLSKNKIEGRLESIIH-DSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       467 ~-~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~l~l~~n~~~~~~~  510 (517)
                      . +++|++|++++|.+++..+..|. .+++|+++++++|++.|.++
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            3 56666666666666666666665 56667777777777766665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-49  Score=412.86  Aligned_cols=495  Identities=21%  Similarity=0.194  Sum_probs=342.2

Q ss_pred             CceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEE
Q 042271            7 LEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLY   86 (517)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~   86 (517)
                      -++++.+++  .+. .+|.. +  .+++++|+++++.+..++...|+++++|++|++++|.+.+..|.++.++++|++|+
T Consensus         6 ~~~~~cs~~--~L~-~ip~~-~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   79 (680)
T 1ziw_A            6 HEVADCSHL--KLT-QVPDD-L--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN   79 (680)
T ss_dssp             SSEEECCSS--CCS-SCCSC-S--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred             CCeeECCCC--Ccc-ccccc-c--CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence            467788877  332 34432 2  37899999999999999988899999999999999999988899999999999999


Q ss_pred             ccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCC
Q 042271           87 ASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF  166 (517)
Q Consensus        87 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  166 (517)
                      +++|.+....+..|+.+++|++|++++|.+++..|.+|.++++|++|++++|.+.+. +...+..+++|++|++++|.+.
T Consensus        80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCC
T ss_pred             CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCccc
Confidence            999999954445799999999999999999977778999999999999999999764 4447889999999999999854


Q ss_pred             CCCCCcccccCccccccccccccccccc---ccCCCC------------------------CcceeeEeeccccccCCCc
Q 042271          167 QSPISLEPLFNLSKRKTFDSEICAETES---HYNSLT------------------------PKFQLTFISLSGYIDGGTF  219 (517)
Q Consensus       167 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~---~~~~~~------------------------~~~~L~~l~l~~~~~~~~~  219 (517)
                      ...........++.|+.+++........   .+....                        ...+|+.+.+.++.+.+..
T Consensus       159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  238 (680)
T 1ziw_A          159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS  238 (680)
T ss_dssp             CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred             ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence            3322222233557788888876432211   111111                        1246788888888888777


Q ss_pred             cccccccCC--cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccc-----cC
Q 042271          220 PKFLYHQHD--LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRG-----HI  292 (517)
Q Consensus       220 ~~~~~~~~~--L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~  292 (517)
                      +.++..++.  |+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|+++++...+     .+
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             hhHhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            888887755  9999999999986665554 788999999999999887777778888888888887754332     11


Q ss_pred             C---hhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc----------------------------ccccc
Q 042271          293 P---VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ----------------------------LTGEI  341 (517)
Q Consensus       293 ~---~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----------------------------i~~~~  341 (517)
                      |   ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.                            +. .+
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~  396 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KI  396 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EE
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eE
Confidence            1   1223347788888888888877666677777777777776654                            33 22


Q ss_pred             chhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC--Cccchhh
Q 042271          342 PERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT--GEIPRWL  418 (517)
Q Consensus       342 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~  418 (517)
                      +...+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.  +..|..+
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence            22344456677777777776654332 45666777777777777665444444555555555555555443  2345555


Q ss_pred             cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC---------CCCcccccEEEccCCcCCccchhhh
Q 042271          419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS---------CFSPASIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~~~L~~L~l~~n~~~~~~~~~l  489 (517)
                      ..+++|+.|++++|.+.+..+..|.++++|++|++++|++++....         ...+++|++|++++|.++.+++..|
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~  556 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF  556 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence            6666666666666666655455556666666666666655443211         1124555555555555554444455


Q ss_pred             cCCCcccEEECCCCcCCCCCC
Q 042271          490 HDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       490 ~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      .++++|+.|++++|.+++..+
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~  577 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPA  577 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT
T ss_pred             ccccCcceeECCCCCCCcCCH
Confidence            555555555555555553333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-49  Score=407.54  Aligned_cols=487  Identities=20%  Similarity=0.177  Sum_probs=338.8

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      +++|+|++++|  .+.+..+.. ++.+++|++|++++|.+..+++.+|+++++|++|++++|.+.+..|..|.++++|++
T Consensus        32 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFN--PLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTS--CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CCcCEEECCCC--CcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            46788888888  444444434 778888888888877777777667788888888888888887666777888888888


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCc----eee
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE----ELI  159 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~----~L~  159 (517)
                      |++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+ ++...+..+++|+    +++
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLD  187 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEE
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceee
Confidence            8888887775555667888888888888888765 457778888888888888887765 3333566655554    688


Q ss_pred             cccCCCCCCCCCcccccCccccccccccccccc----ccccCCCCC-----------------------------cceee
Q 042271          160 LSNNHFFQSPISLEPLFNLSKRKTFDSEICAET----ESHYNSLTP-----------------------------KFQLT  206 (517)
Q Consensus       160 l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~----~~~~~~~~~-----------------------------~~~L~  206 (517)
                      +++|.+...+...  + ...+|+.+++......    +..+..+..                             ...++
T Consensus       188 l~~n~l~~~~~~~--~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          188 MSLNPIDFIQDQA--F-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             CTTCCCCEECTTT--T-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             ccCCCcceeCccc--c-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            8877754332221  2 2225666666553221    111111110                             00233


Q ss_pred             Eeec-cccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccC
Q 042271          207 FISL-SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN  285 (517)
Q Consensus       207 ~l~l-~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  285 (517)
                      .+.+ ..+...+..+. +..+++|+.+++.++.+. .++ . +..+++|++|++++|.+. .++ .+ .+++|++|++++
T Consensus       265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~  337 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTM  337 (606)
T ss_dssp             EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEES
T ss_pred             heeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEEEcccccCc-ccc-cC-CCCccceeeccC
Confidence            3333 22333344444 667778888888887775 344 2 356678888888888773 333 34 778888888888


Q ss_pred             CcccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271          286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ  363 (517)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  363 (517)
                      |...+..  .+. .+++|++|++++|.+++.  .+..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.+.
T Consensus       338 n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          338 NKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLK  412 (606)
T ss_dssp             CSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEE
T ss_pred             CcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccC
Confidence            7543333  222 377888888888877644  3677788888888888888876 444 34456788888888888887


Q ss_pred             cccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCCCccccccccc
Q 042271          364 GHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPNNNLEGPIPIE  441 (517)
Q Consensus       364 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  441 (517)
                      +..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence            6655 567788888888888888877777778888888888888888875 36777888888888888888888777777


Q ss_pred             ccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCC-cccEEECCCCcCCCCCCc
Q 042271          442 FCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSP-HLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       442 ~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~l~l~~n~~~~~~~~  511 (517)
                      +.++++|++|++++|++++..+..+. +++|++|++++|.++..++. +..++ +|++|++++|++++.++.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCcc
Confidence            88888888888888888777666555 78888888888888854444 77776 588888888888877763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.4e-49  Score=403.48  Aligned_cols=494  Identities=16%  Similarity=0.128  Sum_probs=395.2

Q ss_pred             ceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEc
Q 042271            8 EHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYA   87 (517)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l   87 (517)
                      ++++.++.  .+ ..+|..   -.+.+++|+++++.+..+++.+|+++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus        15 ~~~~c~~~--~l-~~iP~~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   88 (606)
T 3t6q_A           15 KTYNCENL--GL-NEIPGT---LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL   88 (606)
T ss_dssp             TEEECTTS--CC-SSCCTT---SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ceEECCCC--Cc-ccCcCC---CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeC
Confidence            45666655  32 233322   2347999999999999998889999999999999999999888999999999999999


Q ss_pred             cCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCC
Q 042271           88 SSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ  167 (517)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (517)
                      ++|.+.+..|..++.+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ++...+..+++|++|++++|.+..
T Consensus        89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc
Confidence            9999998888899999999999999999997778889999999999999999975 332245669999999999998532


Q ss_pred             CCCCcccccCccccc--ccccccccccccccCCCCCcceeeEeeccccccC--------------------------CCc
Q 042271          168 SPISLEPLFNLSKRK--TFDSEICAETESHYNSLTPKFQLTFISLSGYIDG--------------------------GTF  219 (517)
Q Consensus       168 ~~~~~~~l~~l~~L~--~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------------~~~  219 (517)
                        .....+..++.++  .+++.......... .......++.+++.++...                          ...
T Consensus       168 --~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~  244 (606)
T 3t6q_A          168 --LSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS  244 (606)
T ss_dssp             --ECHHHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred             --cChhhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence              2223466777777  56666543322222 2223347888888766410                          001


Q ss_pred             cccccccC--CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhh
Q 042271          220 PKFLYHQH--DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG  297 (517)
Q Consensus       220 ~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  297 (517)
                      +..+..+.  .++.++++++.+.+..+. .+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+..+.
T Consensus       245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  322 (606)
T 3t6q_A          245 PAVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS  322 (606)
T ss_dssp             GGGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred             hhHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhh
Confidence            11222222  688999999998855444 35788999999999998874 455688899999999999999844454444


Q ss_pred             hccCCCcEEEccCCcCCCCC-chhhhcCCCCcEEeccccccccccc-hhHHhhcCCCcEEEccCCcccccccccccCCCC
Q 042271          298 TYLPGLMDLNLSRNAFNGSI-PSSFADMKMLERVDISYNQLTGEIP-ERMAARCFSLEILALSNNSLQGHIFSEKFNLTN  375 (517)
Q Consensus       298 ~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  375 (517)
                      . +++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+... ...+..+++|+.|++++|.+.+..+..+..+++
T Consensus       323 ~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          323 N-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             G-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             c-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            4 899999999999887544 4458899999999999999884331 345667999999999999998888888999999


Q ss_pred             CcEEEccCcccccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc---ccccccCCCCccEE
Q 042271          376 LMTLQLDGNKFTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP---IPIEFCQLNSLKIL  451 (517)
Q Consensus       376 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L  451 (517)
                      |++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   .+..+..+++|++|
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L  481 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL  481 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence            9999999999876544 3488899999999999999888888899999999999999999762   23568899999999


Q ss_pred             EccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271          452 DLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR  515 (517)
Q Consensus       452 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~  515 (517)
                      ++++|++++..+..+. +++|++|++++|.+++..+..|..+++| .|++++|.+++.+|..+++
T Consensus       482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~  545 (606)
T 3t6q_A          482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI  545 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred             ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence            9999999888777665 8999999999999999999999999999 9999999999888776653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-49  Score=408.30  Aligned_cols=468  Identities=20%  Similarity=0.146  Sum_probs=383.6

Q ss_pred             CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271            1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT   80 (517)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~   80 (517)
                      |+++++||+|++++|  .+.+..+.. ++.+++|++|++++|.+..+++..|+++++|++|++++|.+.+..+..+.+++
T Consensus        52 ~~~l~~L~~L~Ls~n--~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           52 FSNFSELQWLDLSRC--EIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTCTTCCEEECTTC--CCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             ccCCccCcEEeCCCC--cccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            578999999999999  666555555 89999999999999999999777999999999999999999977778899999


Q ss_pred             CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCCc----EEeccCCccccccCCCcccCCCCC
Q 042271           81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR----VLDVSDNQLTQNISSSPLMHLTSI  155 (517)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~----~L~L~~~~~~~~~~~~~l~~l~~L  155 (517)
                      +|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+    +|++++|.+.. ++...+... +|
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L  206 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KL  206 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-ee
Confidence            99999999999985 5688999999999999999999987788787776665    89999999965 555345444 89


Q ss_pred             ceeecccCCCCCCCCCcccccCccccccccc--------------------------------ccccccccccCCCCCcc
Q 042271          156 EELILSNNHFFQSPISLEPLFNLSKRKTFDS--------------------------------EICAETESHYNSLTPKF  203 (517)
Q Consensus       156 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l--------------------------------~~~~~~~~~~~~~~~~~  203 (517)
                      ++|++++|.+. .......+.+++.++.+++                                ............+....
T Consensus       207 ~~L~L~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~  285 (606)
T 3vq2_A          207 HELTLRGNFNS-SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA  285 (606)
T ss_dssp             EEEEEESCCSC-HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred             eeeeccCCccc-hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence            99999998742 1111112222333222221                                11111122222355667


Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +|+.+.+.++.... ++ .+..+++|+.+++++|.+ +.+|..   .+++|++|++++|......  .+..+++|+.|++
T Consensus       286 ~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  357 (606)
T 3vq2_A          286 NVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL  357 (606)
T ss_dssp             TCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred             CCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence            99999999988743 45 788899999999999999 578843   8899999999999654432  6778999999999


Q ss_pred             cCCccccc--CChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc
Q 042271          284 SNNFFRGH--IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS  361 (517)
Q Consensus       284 ~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~  361 (517)
                      ++|.+++.  .+..+.. +++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.
T Consensus       358 s~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred             cCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence            99998743  2555555 8999999999999884 557889999999999999999866665677789999999999999


Q ss_pred             ccccccccccCCCCCcEEEccCccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccc
Q 042271          362 LQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI  440 (517)
Q Consensus       362 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  440 (517)
                      +.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|.
T Consensus       436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            998888889999999999999999986 4678899999999999999999988888999999999999999999988899


Q ss_pred             cccCCCCccEEEccCCccccCCCCCCCcc-cccEEEccCCcCCcc
Q 042271          441 EFCQLNSLKILDLSNNSIFRTLPSCFSPA-SIEQLHLSKNKIEGR  484 (517)
Q Consensus       441 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~  484 (517)
                      .+..+++|++|++++|+++........++ +|++|++++|.+...
T Consensus       516 ~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence            99999999999999999986555533354 799999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-47  Score=385.58  Aligned_cols=487  Identities=21%  Similarity=0.201  Sum_probs=357.3

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      +++++|++++|  .+.+..+.. +..+++|++|++++|.+..++.++|+++++|++|++++|.+.+..+.+|.++++|++
T Consensus        28 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFN--PLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSC--CCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCC--ccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            36788888888  444443333 778888888888888787777767888888888888888887666677888888888


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCC----ceee
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI----EELI  159 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L----~~L~  159 (517)
                      |++++|.+....+..++.+++|++|++++|.+++ .+|..|.++++|++|++++|.+.+ ++...+..+++|    ++++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEE
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcc
Confidence            8888887775444457788888888888888775 357778888888888888887764 333366667777    6788


Q ss_pred             cccCCCCCCCCCcccccCccccccccccccccc----ccccCCCCCcceeeEeecc--ccccC----CCccccccccC--
Q 042271          160 LSNNHFFQSPISLEPLFNLSKRKTFDSEICAET----ESHYNSLTPKFQLTFISLS--GYIDG----GTFPKFLYHQH--  227 (517)
Q Consensus       160 l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~--~~~~~----~~~~~~~~~~~--  227 (517)
                      +++|.+......  .+... .|+.+++......    ......+   .+++...+.  .....    ......+..+.  
T Consensus       184 l~~n~l~~~~~~--~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l---~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l  257 (570)
T 2z63_A          184 LSLNPMNFIQPG--AFKEI-RLHKLTLRNNFDSLNVMKTCIQGL---AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  257 (570)
T ss_dssp             CTTCCCCEECTT--TTTTC-EEEEEEEESCCSCTTHHHHHHHTT---TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred             cCCCCceecCHH--HhccC-cceeEecccccccccchhhhhcCc---cccceeeeccccccCchhhhhcchhhhcccccc
Confidence            887765332221  12121 3444444332100    0001111   111111111  00000    00001111121  


Q ss_pred             CcCEeeccCC-cCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEE
Q 042271          228 DLKNADLSHL-NLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL  306 (517)
Q Consensus       228 ~L~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  306 (517)
                      .++.+.+..+ .+.+..+..+ ..+++|+.|+++++.+.. .+..+..+ +|++|++++|.+. .+|..   .+++|+.|
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L  330 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRL  330 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEE
T ss_pred             chhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcc---cccccCEE
Confidence            2445555555 4555555553 678999999999998864 44556666 9999999999987 66663   37899999


Q ss_pred             EccCCcCCCCCchhhhcCCCCcEEeccccccccccc-hhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271          307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP-ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       307 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      ++++|.+.+..+.  ..+++|++|++++|.+.+... ...+..+++|+.|++++|.+.+.... +..+++|++|++++|.
T Consensus       331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred             eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence            9999988755543  788999999999999874321 34556799999999999998876554 8899999999999999


Q ss_pred             cccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc-ccccccccCCCCccEEEccCCccccCCC
Q 042271          386 FTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       386 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      +....+ ..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+. +.+|..+..+++|++|++++|++++..+
T Consensus       408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  487 (570)
T ss_dssp             EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence            976544 56889999999999999998888889999999999999999997 4678899999999999999999988877


Q ss_pred             CCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          464 SCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       464 ~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      ..+. +++|++|++++|.+++.++..|..+++|++|++++|+++|.+|.
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            6665 89999999999999999999999999999999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=406.04  Aligned_cols=485  Identities=20%  Similarity=0.188  Sum_probs=357.6

Q ss_pred             CCcCceeeCCCccccccccchhhccCCCCcceEEecccc-ccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271            4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINS-SKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL   82 (517)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   82 (517)
                      .+++|+|++++|  .+.+..+.. +..+++|++|+++++ .+..+++.+|+++++|++|++++|.+.+..|..|.++++|
T Consensus        23 p~~l~~LdLs~N--~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           23 LNTTERLLLSFN--YIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             CTTCCEEEEESC--CCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCCcCEEECCCC--cCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            368999999999  555555555 899999999999977 5667767789999999999999999988889999999999


Q ss_pred             cEEEccCCccCCCCCcc--hhccccCcEEEccccccCCccc-ccccCCCCCcEEeccCCccccccCCCcccCC--CCCce
Q 042271           83 QVLYASSNELTGNISPG--LCELVLMRELHIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQNISSSPLMHL--TSIEE  157 (517)
Q Consensus        83 ~~L~l~~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l--~~L~~  157 (517)
                      ++|++++|.+.+..+..  ++.+++|++|++++|.+++..+ ..|.++++|++|++++|.+.+..+ ..+..+  ++|+.
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~~~~L~~  178 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTLSF  178 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHHHCSSCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccccCCccce
Confidence            99999999998766654  8899999999999999886654 578999999999999998865333 366666  78888


Q ss_pred             eecccCCCCCCCCCcccccCcc------ccccccccccccc---ccccC-------------------------------
Q 042271          158 LILSNNHFFQSPISLEPLFNLS------KRKTFDSEICAET---ESHYN-------------------------------  197 (517)
Q Consensus       158 L~l~~~~~~~~~~~~~~l~~l~------~L~~l~l~~~~~~---~~~~~-------------------------------  197 (517)
                      |+++.|.+.....  ..+..+.      .|+.+++......   ...+.                               
T Consensus       179 L~L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~  256 (844)
T 3j0a_A          179 FSLAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD  256 (844)
T ss_dssp             CEECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred             EECCCCccccccc--cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence            8888887433211  1122222      2666666553111   00000                               


Q ss_pred             --CCC--CcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccc
Q 042271          198 --SLT--PKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH  273 (517)
Q Consensus       198 --~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  273 (517)
                        .+.  ...+++.++++++.+....+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.
T Consensus       257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhc
Confidence              011  1246777777777666666666777777777777777776554444 35667777777777777666666677


Q ss_pred             cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE  353 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  353 (517)
                      .+++|+.|++++|.+. .++...+..+++|+.|++++|.+++.     ..+++|+.+++++|.+. .+|..    ..+++
T Consensus       336 ~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~  404 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTAN  404 (844)
T ss_dssp             SCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCC
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccccc
Confidence            7777777777777775 44433334467777777777776632     22667777777777776 44432    45678


Q ss_pred             EEEccCCccccccc-ccccCCCCCcEEEccCcccccccch-hhhhcccCCeEEecCCCCC-----CccchhhcCCCCCcE
Q 042271          354 ILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLT-----GEIPRWLGNLSALED  426 (517)
Q Consensus       354 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~  426 (517)
                      .+++++|.+.+... ..+..+++|+.|++++|.+.+.... .+..+++|+.|++++|.+.     +..+..+.++++|+.
T Consensus       405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~  484 (844)
T 3j0a_A          405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV  484 (844)
T ss_dssp             EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred             eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence            88888887775422 2345789999999999998743322 3456789999999999886     334566888999999


Q ss_pred             EECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       427 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      |++++|.+.+..+..|.++++|+.|++++|++++..+..+. ++|+.|++++|.+++..+..|.   +|+.+++++|++.
T Consensus       485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~  560 (844)
T 3j0a_A          485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFI  560 (844)
T ss_dssp             CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCC
T ss_pred             EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcc
Confidence            99999999988888899999999999999999887776665 8999999999999988887654   8899999999998


Q ss_pred             CCCC
Q 042271          507 GSIP  510 (517)
Q Consensus       507 ~~~~  510 (517)
                      |.++
T Consensus       561 C~c~  564 (844)
T 3j0a_A          561 CECE  564 (844)
T ss_dssp             CSSS
T ss_pred             cccc
Confidence            8775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-46  Score=391.86  Aligned_cols=480  Identities=20%  Similarity=0.148  Sum_probs=324.2

Q ss_pred             CCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCc-cccccCCCCCcEEEccCCccCCCCCcchhccccCcE
Q 042271           30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSL-PWCLANMTSLQVLYASSNELTGNISPGLCELVLMRE  108 (517)
Q Consensus        30 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  108 (517)
                      ..+++++|++++|.+..+....|.++++|++|++++|.....+ |.+|.++++|++|++++|.+.+..|..++.+++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            5578999999999999998889999999999999999654344 889999999999999999999888999999999999


Q ss_pred             EEccccccCCccccc--ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc--cccccc
Q 042271          109 LHIDNNDLRGSLPLC--LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL--SKRKTF  184 (517)
Q Consensus       109 L~L~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l--~~L~~l  184 (517)
                      |++++|.+++..|..  +.++++|++|++++|.+.+..+...+..+++|++|++++|.+...  ....+..+  ++|+.+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--CEHELEPLQGKTLSFF  179 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--CSGGGHHHHHCSSCCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--CHHHcccccCCccceE
Confidence            999999998766654  999999999999999997644444789999999999999985332  22344444  678888


Q ss_pred             ccccccccccccCCCCCc------ceeeEeeccccccCCCcccccccc---CCcCEeeccCCcC---------CCCCChh
Q 042271          185 DSEICAETESHYNSLTPK------FQLTFISLSGYIDGGTFPKFLYHQ---HDLKNADLSHLNL---------SGKFPNW  246 (517)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~------~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~---------~~~~~~~  246 (517)
                      ++............+...      ..|+.+++++|......+..+...   ..++.+.+..+..         .+.....
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            877754433222222222      248999999987666555444322   2333443331111         0000000


Q ss_pred             hhhc--ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcC
Q 042271          247 LVEN--NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM  324 (517)
Q Consensus       247 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l  324 (517)
                       +..  .++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+
T Consensus       260 -f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          260 -FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             -TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             -hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCC
Confidence             011  13455555555544444444444455555555555554422222222 24455555555555544444445555


Q ss_pred             CCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccc---------------ccccCCCCCcEEEccCcccccc
Q 042271          325 KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF---------------SEKFNLTNLMTLQLDGNKFTGE  389 (517)
Q Consensus       325 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---------------~~~~~~~~L~~L~l~~~~~~~~  389 (517)
                      ++|+.|++++|.+. .++...+..+++|+.|++++|.++....               ..-....+++.|++++|.+...
T Consensus       338 ~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          338 PKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL  416 (844)
T ss_dssp             TTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence            55555555555444 3333333444555555555554432110               0001134566666666666532


Q ss_pred             c-chhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCccc-----ccccccccCCCCccEEEccCCccccCC
Q 042271          390 I-LESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLE-----GPIPIEFCQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       390 ~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~  462 (517)
                      . ...+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.     +..+..|.++++|+.|+|++|++++..
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  496 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP  496 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence            2 2234578999999999999885433 24566899999999999986     334466888999999999999999888


Q ss_pred             CCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271          463 PSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       463 ~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      +..+. +++|++|++++|.+++.++..+.  ++|+.|++++|.+++.+|..+.+|
T Consensus       497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L  549 (844)
T 3j0a_A          497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSL  549 (844)
T ss_dssp             TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred             hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCc
Confidence            88765 89999999999999988877776  899999999999999999888765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-45  Score=371.65  Aligned_cols=468  Identities=18%  Similarity=0.183  Sum_probs=379.5

Q ss_pred             CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271            1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT   80 (517)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~   80 (517)
                      |+.+++||+|++++|  .+.+..+.. ++++++|++|+++++.+..+++..|+++++|++|++++|.+....+..+.+++
T Consensus        48 ~~~l~~L~~L~Ls~n--~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           48 FFSFPELQVLDLSRC--EIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             TTTCSSCCEEECTTC--CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             hhCCCCceEEECCCC--cCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence            578999999999999  555544444 89999999999999999999888999999999999999999866666799999


Q ss_pred             CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC----cEEeccCCccccccCCCcccCCCCC
Q 042271           81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL----RVLDVSDNQLTQNISSSPLMHLTSI  155 (517)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~L~~~~~~~~~~~~~l~~l~~L  155 (517)
                      +|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|    ++|++++|.+.. +++..+... +|
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L  202 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RL  202 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccC-cc
Confidence            99999999999986 468899999999999999999998778889888888    899999999975 444356555 89


Q ss_pred             ceeecccCCCCCCCCCcccccCccccccccccccc---------ccccccCCCCCcceeeEeecccc-ccCCCccccccc
Q 042271          156 EELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA---------ETESHYNSLTPKFQLTFISLSGY-IDGGTFPKFLYH  225 (517)
Q Consensus       156 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~---------~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~  225 (517)
                      ++|++++|.. ........+..++.++...+....         .....+... ....++.+.+..+ ...+..+..+..
T Consensus       203 ~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l-~~l~l~~l~l~~~~~~~~~~~~~~~~  280 (570)
T 2z63_A          203 HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNC  280 (570)
T ss_dssp             EEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG-GGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred             eeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc-cccchhhhhhhcchhhhhhchhhhcC
Confidence            9999998752 221111233344444433332211         001111111 1125677777766 566677888899


Q ss_pred             cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271          226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD  305 (517)
Q Consensus       226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  305 (517)
                      +++|+.++++++.+. .+|.++ ..+ +|++|++++|.+....   ...+++|+.|++++|.+.+..+.   ..+++|++
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~---~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~  351 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFS-YNF-GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEF  351 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCC-SCC-CCSEEEEESCBCSSCC---BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCE
T ss_pred             cCcccEEEecCccch-hhhhhh-ccC-CccEEeeccCcccccC---cccccccCEEeCcCCcccccccc---ccCCCCCE
Confidence            999999999999888 566665 455 9999999999887432   25788999999999988755544   34899999


Q ss_pred             EEccCCcCCCCC--chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEcc
Q 042271          306 LNLSRNAFNGSI--PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLD  382 (517)
Q Consensus       306 L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~  382 (517)
                      |++++|.+++..  +..+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|+++
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            999999988543  678899999999999999988 45544 6679999999999999987654 567899999999999


Q ss_pred             CcccccccchhhhhcccCCeEEecCCCCC-CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271          383 GNKFTGEILESLSKCYLLEGLYLSDNHLT-GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       383 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      +|.+....+..+.++++|++|++++|.+. +.+|..+..+++|+.|++++|++.+..|..|..+++|++|++++|++++.
T Consensus       430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            99998888888999999999999999987 46888999999999999999999988889999999999999999999888


Q ss_pred             CCCCCC-cccccEEEccCCcCCccch
Q 042271          462 LPSCFS-PASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       462 ~~~~~~-~~~L~~L~l~~n~~~~~~~  486 (517)
                      .+..+. +++|++|++++|.+++..+
T Consensus       510 ~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          510 PDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHHHhhcccCCcEEEecCCcccCCCc
Confidence            777665 8999999999999986543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-44  Score=367.39  Aligned_cols=488  Identities=19%  Similarity=0.147  Sum_probs=376.7

Q ss_pred             CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271            4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ   83 (517)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~   83 (517)
                      |+...+.+.+++  .++ .+|..   -.+.|++|+++++.+..+++..|+++++|++|++++|++.+..+.+|.++++|+
T Consensus         4 C~~~~~c~~~~~--~l~-~ip~~---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            4 CDASGVCDGRSR--SFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             ECTTSEEECTTS--CCS-SCCSC---CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCceEECCCC--ccc-ccccc---CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            455556677776  332 34433   237899999999999988877899999999999999999988889999999999


Q ss_pred             EEEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271           84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN  162 (517)
Q Consensus        84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (517)
                      +|++++|.+.+..+..++.+++|++|++++|.+++ ..|..+.++++|++|++++|...+.++...+..+++|++|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999997666669999999999999999986 35678999999999999999855567766799999999999999


Q ss_pred             CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCc---cccccccCCcCEeeccCCcC
Q 042271          163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTF---PKFLYHQHDLKNADLSHLNL  239 (517)
Q Consensus       163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~  239 (517)
                      |.+...  ....+..++.|+.+++.................+|+++++++|.+.+..   ......++.|+.++++++.+
T Consensus       158 n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          158 LSLRNY--QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             TTCCEE--CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             Cccccc--ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence            985332  2245666777777777664321111111112457888888888766531   12234567888888888877


Q ss_pred             CCCCChhh---hhcccccceEeccCCccCCCc------ccccccCCcccEEEccCCccccc-----CChhhhhccCCCcE
Q 042271          240 SGKFPNWL---VENNANLERLLLADNSLFGSF------WMPIHSHQKLATLDVSNNFFRGH-----IPVEIGTYLPGLMD  305 (517)
Q Consensus       240 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~  305 (517)
                      .+..+..+   ...+++++.+++++|.+.+..      ...+..+++++.+++.++.+...     ++ ......++|++
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~  314 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKR  314 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCE
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceE
Confidence            65444333   245678889999888764421      22346678889999988766421     11 12233678999


Q ss_pred             EEccCCcCCCCCchhh-hcCCCCcEEeccccccccccchh--HHhhcCCCcEEEccCCccccccc--ccccCCCCCcEEE
Q 042271          306 LNLSRNAFNGSIPSSF-ADMKMLERVDISYNQLTGEIPER--MAARCFSLEILALSNNSLQGHIF--SEKFNLTNLMTLQ  380 (517)
Q Consensus       306 L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~  380 (517)
                      |++++|.+. .+|..+ ..+++|++|++++|.+.+.++..  .+..+++|+.|++++|.+++...  ..+..+++|++|+
T Consensus       315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence            999999987 455554 68999999999999998665532  24568899999999999976532  4577899999999


Q ss_pred             ccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271          381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       381 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      +++|.+. ..+..+..+++|++|++++|.+. .++..+  .++|++|++++|++.+.    +..+++|++|++++|+++.
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~  465 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKT  465 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSS
T ss_pred             CCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccCc
Confidence            9999998 56777888899999999999987 444333  26899999999999863    2578999999999999974


Q ss_pred             CCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       461 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                       .+....+++|++|++++|.+++.++..|..+++|+.|++++|+++|.+|
T Consensus       466 -ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          466 -LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             4444458999999999999999999999999999999999999999887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=363.72  Aligned_cols=458  Identities=18%  Similarity=0.178  Sum_probs=343.1

Q ss_pred             ceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEc
Q 042271            8 EHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYA   87 (517)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l   87 (517)
                      ++|+++++  .+. .+|.. +.  ++|++|++++|.+..++...|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus         3 ~~l~ls~n--~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKN--GLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTS--CCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCC--Ccc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            68999999  554 45544 33  89999999999999998889999999999999999999888999999999999999


Q ss_pred             cCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCC--ceeecccCC
Q 042271           88 SSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI--EELILSNNH  164 (517)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~  164 (517)
                      ++|.++ .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+    ..+..+++|  ++|++++|.
T Consensus        77 s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           77 SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred             CCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence            999998 56655  89999999999999986 478899999999999999999865    257778888  999999997


Q ss_pred             CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCcc-ccccccCCcCEeeccCCc-----
Q 042271          165 FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFP-KFLYHQHDLKNADLSHLN-----  238 (517)
Q Consensus       165 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-----  238 (517)
                      +.........+..+..                       +...+.+.++...+..+ ..+..+++|+.+++++|.     
T Consensus       150 l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  206 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC  206 (520)
T ss_dssp             TTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred             cccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence            5211111122222211                       12233444444333222 234456666777666654     


Q ss_pred             --CCCCCChhhhhcccccceEeccCCccCCCccccc---ccCCcccEEEccCCcccccCChhhh----hccCCCcEEEcc
Q 042271          239 --LSGKFPNWLVENNANLERLLLADNSLFGSFWMPI---HSHQKLATLDVSNNFFRGHIPVEIG----TYLPGLMDLNLS  309 (517)
Q Consensus       239 --~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~  309 (517)
                        +.+.++ . +..+++|+.|+++++.+.+.....+   ...++|+.|++++|.+.+.+|..++    ..+++|+.++++
T Consensus       207 ~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~  284 (520)
T 2z7x_B          207 SYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV  284 (520)
T ss_dssp             HHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred             ceeecchh-h-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence              333332 1 3456777777777766543221111   1235788888888888767776662    237788888888


Q ss_pred             CCcCCCCCc-hhhhcC---CCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271          310 RNAFNGSIP-SSFADM---KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       310 ~~~i~~~~~-~~~~~l---~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      +|.+  .+| ..+..+   .+|+.|++++|.+.. .+  ....+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  359 (520)
T 2z7x_B          285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ  359 (520)
T ss_dssp             ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred             ccce--ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence            8877  233 444444   678888888888763 22  11457889999999998888777788889999999999999


Q ss_pred             ccc--ccchhhhhcccCCeEEecCCCCCCccch-hhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271          386 FTG--EILESLSKCYLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       386 ~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  462 (517)
                      +.+  ..+..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..+..+.  ++|+.|++++|+++...
T Consensus       360 l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip  437 (520)
T 2z7x_B          360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP  437 (520)
T ss_dssp             CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC
T ss_pred             cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc
Confidence            875  3446688899999999999999864554 478889999999999999876666553  79999999999997554


Q ss_pred             CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      .....+++|++|++++|.++..++..|..+++|++|++++|+++|.++
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            445568999999999999997666679999999999999999998775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.4e-44  Score=363.85  Aligned_cols=441  Identities=17%  Similarity=0.166  Sum_probs=318.0

Q ss_pred             cCceeeCCCccccccccchhhccCCCCcceEEecccccc-------C------CcchhhhhhcccCcEEEecCCcccCCc
Q 042271            6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSK-------N------TILDQGLRQLVHLQELYIGGYDLRGSL   72 (517)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~------~~~~~~l~~l~~L~~L~l~~~~~~~~~   72 (517)
                      +++.|+++++  .+.+.++.. +++++.|++|++++|..       +      .++...   +..|| ++++++.+.+..
T Consensus        82 ~V~~L~L~~~--~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~  154 (636)
T 4eco_A           82 RVTGLSLEGF--GASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDP  154 (636)
T ss_dssp             CEEEEECTTS--CCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCG
T ss_pred             CEEEEEecCc--ccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCc
Confidence            5677777777  666777765 77778888888876643       1      222211   33444 455444444333


Q ss_pred             cccccC-------------------CCCCcEEEcc--CCccCCCCCcchhccccCcEEEccccccCCc------------
Q 042271           73 PWCLAN-------------------MTSLQVLYAS--SNELTGNISPGLCELVLMRELHIDNNDLRGS------------  119 (517)
Q Consensus        73 ~~~l~~-------------------l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~------------  119 (517)
                      +..+..                   ...++.+.+.  .|.+++ +|..++++++|++|++++|.+++.            
T Consensus       155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  233 (636)
T 4eco_A          155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE  233 (636)
T ss_dssp             GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccc
Confidence            333321                   1122222222  456665 677777888888888888887764            


Q ss_pred             -----cccccc--CCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC-CCCCCCCcccccCcccccccccccccc
Q 042271          120 -----LPLCLA--NLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH-FFQSPISLEPLFNLSKRKTFDSEICAE  191 (517)
Q Consensus       120 -----~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~l~l~~~~~  191 (517)
                           +|..+.  ++++|++|++++|.+.+.+|. .+..+++|++|++++|. +...... ..+..+.            
T Consensus       234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~------------  299 (636)
T 4eco_A          234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLK-DDWQALA------------  299 (636)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHH------------
T ss_pred             hhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccch-HHHHhhh------------
Confidence                 777777  788888888888877666664 67778888888888775 3110000 0011110            


Q ss_pred             cccccCCCCCcceeeEeeccccccCCCccc--cccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271          192 TESHYNSLTPKFQLTFISLSGYIDGGTFPK--FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW  269 (517)
Q Consensus       192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  269 (517)
                            ......+|+++++++|.+. .+|.  .+..+++|+.|++++|.+.+.+| . +..+++|++|++++|.+. ..+
T Consensus       300 ------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp  369 (636)
T 4eco_A          300 ------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIP  369 (636)
T ss_dssp             ------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECC
T ss_pred             ------ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-ccc
Confidence                  0111236777777777776 6777  78889999999999999988888 3 478899999999999887 455


Q ss_pred             cccccCCc-ccEEEccCCcccccCChhhhh-ccCCCcEEEccCCcCCCCCchhhh-------cCCCCcEEeccccccccc
Q 042271          270 MPIHSHQK-LATLDVSNNFFRGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFA-------DMKMLERVDISYNQLTGE  340 (517)
Q Consensus       270 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~-------~l~~L~~L~l~~~~i~~~  340 (517)
                      ..+..+++ |+.|++++|.++ .+|..+.. .+++|++|++++|.+.+..|..+.       .+++|++|++++|.+. .
T Consensus       370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~  447 (636)
T 4eco_A          370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-K  447 (636)
T ss_dssp             TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-S
T ss_pred             HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-c
Confidence            66888888 999999999988 77765543 134899999999999888887777       7789999999999998 8


Q ss_pred             cchhHHhhcCCCcEEEccCCcccccccccccCC-------CCCcEEEccCcccccccchhhh--hcccCCeEEecCCCCC
Q 042271          341 IPERMAARCFSLEILALSNNSLQGHIFSEKFNL-------TNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDNHLT  411 (517)
Q Consensus       341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~  411 (517)
                      +|...+..+++|+.|++++|.++......+...       ++|++|++++|.+. ..+..+.  .+++|+.|++++|++.
T Consensus       448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence            888888889999999999999885443333333       38999999999998 5666665  8899999999999998


Q ss_pred             CccchhhcCCCCCcEEEC------CCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271          412 GEIPRWLGNLSALEDIIM------PNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      + +|..+..+++|+.|++      ++|.+.+.+|..+..+++|++|++++|++ +..+..+. ++|++|++++|++...
T Consensus       527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISI  602 (636)
T ss_dssp             S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred             C-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence            5 7888889999999999      45777778888899999999999999999 44455443 8999999999977644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=350.04  Aligned_cols=440  Identities=17%  Similarity=0.177  Sum_probs=355.1

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN  114 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  114 (517)
                      ++|+++++.+..+|. .+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..++.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcccccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            579999999999886 333  89999999999999788889999999999999999999777888999999999999999


Q ss_pred             ccCCcccccccCCCCCcEEeccCCcccc-ccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccc
Q 042271          115 DLRGSLPLCLANLTSLRVLDVSDNQLTQ-NISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETE  193 (517)
Q Consensus       115 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  193 (517)
                      .++ .+|..  .+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+..     ..+..++.|            
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L------------  138 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHL------------  138 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG-----GGGGGGTTS------------
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch-----hhccccccc------------
Confidence            998 56665  89999999999999975 233 378999999999999998522     122222211            


Q ss_pred             cccCCCCCcceeeEeecccccc--CCCccccccccC-CcCEeeccCCcCCCCCChhhhhcccccceEeccCCc-------
Q 042271          194 SHYNSLTPKFQLTFISLSGYID--GGTFPKFLYHQH-DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNS-------  263 (517)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------  263 (517)
                                +|+.+.+.+|.+  .+..|..+..+. ....+++.++.+.+.++...+..+++|+.+++++|.       
T Consensus       139 ----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          139 ----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             ----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             ----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence                      447888888877  666676666554 334567788888877777767788999999999886       


Q ss_pred             cCCCcccccccCCcccEEEccCCcccccCChhhhh--ccCCCcEEEccCCcCCCCCchhh-----hcCCCCcEEeccccc
Q 042271          264 LFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGT--YLPGLMDLNLSRNAFNGSIPSSF-----ADMKMLERVDISYNQ  336 (517)
Q Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~-----~~l~~L~~L~l~~~~  336 (517)
                      +.+.. ..+..+++|+.|+++++.+.+..+.....  ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.
T Consensus       209 ~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          209 FLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            33333 36788899999999999876543333221  25699999999999998888887     899999999999998


Q ss_pred             cccccchhHHhhc---CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-
Q 042271          337 LTGEIPERMAARC---FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-  412 (517)
Q Consensus       337 i~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  412 (517)
                      +  .+|...+..+   ++|+.|++++|.+.....  +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ 
T Consensus       288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL  363 (520)
T ss_dssp             C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred             e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence            8  5663333333   679999999998875331  2688999999999999998788889999999999999999986 


Q ss_pred             -ccchhhcCCCCCcEEECCCCcccccccc-cccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhc
Q 042271          413 -EIPRWLGNLSALEDIIMPNNNLEGPIPI-EFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH  490 (517)
Q Consensus       413 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  490 (517)
                       .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..+..+ .++|++|++++|.++.. |..+.
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~~i-p~~~~  441 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI-PKQVV  441 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCCCC-CGGGG
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh-cccCCEEECCCCccccc-chhhh
Confidence             4567899999999999999999974554 58889999999999999977666554 38999999999999954 44455


Q ss_pred             CCCcccEEECCCCcCCCCCCcc-ccCC
Q 042271          491 DSPHLVTLDLSCNSLHGSIPNQ-IGRL  516 (517)
Q Consensus       491 ~~~~L~~l~l~~n~~~~~~~~~-~~~~  516 (517)
                      .+++|++|++++|+++ .+|.. |+++
T Consensus       442 ~l~~L~~L~L~~N~l~-~l~~~~~~~l  467 (520)
T 2z7x_B          442 KLEALQELNVASNQLK-SVPDGIFDRL  467 (520)
T ss_dssp             GCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cCCCCCEEECCCCcCC-ccCHHHhccC
Confidence            8999999999999999 56665 6654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-41  Score=344.47  Aligned_cols=473  Identities=17%  Similarity=0.154  Sum_probs=356.1

Q ss_pred             CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271           31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH  110 (517)
Q Consensus        31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  110 (517)
                      |+...+.+++++.+..+|.. +  .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..++.+++|++|+
T Consensus         4 C~~~~~c~~~~~~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCceEECCCCcccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            44445567788888888873 3  37999999999999988889999999999999999999977778899999999999


Q ss_pred             ccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccc
Q 042271          111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA  190 (517)
Q Consensus       111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  190 (517)
                      +++|.+++..+.+|.++++|++|++++|.+.+...+..+..+++|++|++++|.. ........+.++++|+.+++....
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCc
Confidence            9999999888888999999999999999997522223789999999999999972 233333456677777777777655


Q ss_pred             ccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCC--ChhhhhcccccceEeccCCccCCCc
Q 042271          191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF--PNWLVENNANLERLLLADNSLFGSF  268 (517)
Q Consensus       191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~  268 (517)
                      ........+....+|+.+++..+.........+..+++|+.+++++|.+.+..  +..+...+++++.|+++++.+.+..
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            44444445555567777777766554322222345677777777777766531  2222344567777777777654322


Q ss_pred             c----cccccCCcccEEEccCCcccccCC-----hhhhhccCCCcEEEccCCcCCCC-----CchhhhcCCCCcEEeccc
Q 042271          269 W----MPIHSHQKLATLDVSNNFFRGHIP-----VEIGTYLPGLMDLNLSRNAFNGS-----IPSSFADMKMLERVDISY  334 (517)
Q Consensus       269 ~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~~~-----~~~~~~~l~~L~~L~l~~  334 (517)
                      .    ..+..+++|+.+++++|.+.+...     ......+++++.+++.++.+...     .+..+...++|++|++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            2    223456677777777776653110     01112356777888777765421     223345567899999999


Q ss_pred             cccccccchhHHhhcCCCcEEEccCCccccccc---ccccCCCCCcEEEccCcccccccc--hhhhhcccCCeEEecCCC
Q 042271          335 NQLTGEIPERMAARCFSLEILALSNNSLQGHIF---SEKFNLTNLMTLQLDGNKFTGEIL--ESLSKCYLLEGLYLSDNH  409 (517)
Q Consensus       335 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~  409 (517)
                      |.+. .+|..++..+++|+.|++++|.+.+..+   ..+..+++|++|++++|.+++...  ..+..+++|++|++++|+
T Consensus       320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence            9987 8888888889999999999999987543   346789999999999999975432  458889999999999999


Q ss_pred             CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhh
Q 042271          410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       410 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  489 (517)
                      +. .+|..+..+++|++|++++|.+.. ++..+  .++|++|++++|++++..   ..+++|++|++++|.++.+++  .
T Consensus       399 l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~  469 (549)
T 2z81_A          399 FH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--A  469 (549)
T ss_dssp             CC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--G
T ss_pred             Cc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--c
Confidence            98 678888999999999999999974 44333  269999999999997753   247999999999999995544  4


Q ss_pred             cCCCcccEEECCCCcCCCCCCccccCCC
Q 042271          490 HDSPHLVTLDLSCNSLHGSIPNQIGRLP  517 (517)
Q Consensus       490 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~  517 (517)
                      ..+++|+.|++++|++++.+|..+++++
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCc
Confidence            5689999999999999988888777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-42  Score=357.97  Aligned_cols=386  Identities=18%  Similarity=0.154  Sum_probs=284.6

Q ss_pred             CccCCCCCcchhccccCcEEEccccccCC-----------------ccccccc--CCCCCcEEeccCCccccccCCCccc
Q 042271           90 NELTGNISPGLCELVLMRELHIDNNDLRG-----------------SLPLCLA--NLTSLRVLDVSDNQLTQNISSSPLM  150 (517)
Q Consensus        90 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~l~  150 (517)
                      |.+++ +|..++++++|++|+|++|.+++                 .+|..+.  ++++|++|++++|.+.+.+|. .+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence            45554 66667777777777777777765                 2666665  777777777777766655554 667


Q ss_pred             CCCCCceeecccCC-CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccc--cccccC
Q 042271          151 HLTSIEELILSNNH-FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPK--FLYHQH  227 (517)
Q Consensus       151 ~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~  227 (517)
                      .+++|++|++++|. +.....+ ..+..++                 ..+...++|+.|++++|.+. .+|.  .+..++
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~-----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~  573 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLK-ADWTRLA-----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV  573 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHH-HHHHHHH-----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred             CCCCCCEEECcCCCCcccccch-HHHHhhh-----------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence            77777777777765 2100000 0010000                 01122336677777777666 6777  788888


Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCc-ccEEEccCCcccccCChhhhh-ccCCCcE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQK-LATLDVSNNFFRGHIPVEIGT-YLPGLMD  305 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L~~  305 (517)
                      +|+.|++++|.+. .+|  .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.++ .+|..+.. ..++|+.
T Consensus       574 ~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~  648 (876)
T 4ecn_A          574 KLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS  648 (876)
T ss_dssp             TCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred             CCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence            9999999999888 777  3477889999999999887 55566888888 999999999987 77765443 1234999


Q ss_pred             EEccCCcCCCCCch---hhh--cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc-------CC
Q 042271          306 LNLSRNAFNGSIPS---SFA--DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-------NL  373 (517)
Q Consensus       306 L~l~~~~i~~~~~~---~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------~~  373 (517)
                      |++++|.+.+.++.   .+.  .+++|+.|++++|.+. .+|..++..+++|+.|++++|.+.......+.       ++
T Consensus       649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl  727 (876)
T 4ecn_A          649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT  727 (876)
T ss_dssp             EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred             EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence            99999998865442   222  3458999999999998 88888888899999999999988844333333       23


Q ss_pred             CCCcEEEccCcccccccchhhh--hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC------CcccccccccccCC
Q 042271          374 TNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN------NNLEGPIPIEFCQL  445 (517)
Q Consensus       374 ~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~  445 (517)
                      ++|+.|++++|.+. ..+..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |.+.+.+|..+..+
T Consensus       728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence            48999999999998 5667776  89999999999999985 788888999999999976      77777889999999


Q ss_pred             CCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          446 NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       446 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      ++|++|+|++|++ +..|..+ .++|+.|++++|++....+..+.....+..+.|.+|+..
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            9999999999999 5555544 379999999999998777666766666677777777665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.9e-42  Score=351.18  Aligned_cols=357  Identities=21%  Similarity=0.272  Sum_probs=292.3

Q ss_pred             ccccCCcccccccCCCCCcEEeccCCccccc-----------------cCCCccc--CCCCCceeecccCCCCCCCCCcc
Q 042271          113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQN-----------------ISSSPLM--HLTSIEELILSNNHFFQSPISLE  173 (517)
Q Consensus       113 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~  173 (517)
                      .|.+++ +|.+++++++|++|++++|.+.+.                 +|. .+.  .+++|++|++++|.+. +... .
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~-~~~p-~  267 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNL-TKLP-T  267 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTC-SSCC-T
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCC-ccCh-H
Confidence            567887 899999999999999999999764                 666 777  9999999999999742 2111 2


Q ss_pred             cccCcccccccccccccccccccCCCCCcceeeEeeccccc-cCC-Ccccccccc------CCcCEeeccCCcCCCCCCh
Q 042271          174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI-DGG-TFPKFLYHQ------HDLKNADLSHLNLSGKFPN  245 (517)
Q Consensus       174 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~  245 (517)
                      .+.                        ...+|+.|++++|. +.+ .+|..+..+      ++|+.|++++|.+. .+|.
T Consensus       268 ~l~------------------------~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          268 FLK------------------------ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             TTT------------------------TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             HHh------------------------cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            222                        33377888888887 776 788887776      99999999999999 7777


Q ss_pred             -hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCC-CcEEEccCCcCCCCCchhhhc
Q 042271          246 -WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG-LMDLNLSRNAFNGSIPSSFAD  323 (517)
Q Consensus       246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~  323 (517)
                       ..+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.++ .+|..+.. +++ |++|++++|.++ .+|..+..
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~  398 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDA  398 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred             hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhh
Confidence             134789999999999999986665 8889999999999999998 88887766 788 999999999998 67777766


Q ss_pred             CC--CCcEEeccccccccccchhHHh------hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh
Q 042271          324 MK--MLERVDISYNQLTGEIPERMAA------RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS  395 (517)
Q Consensus       324 l~--~L~~L~l~~~~i~~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  395 (517)
                      ++  +|++|++++|.+.+..|..+..      .+++|+.|++++|.++......+..+++|++|++++|.+.......+.
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence            54  8999999999998766644330      467999999999999966555667799999999999999844333333


Q ss_pred             h-------cccCCeEEecCCCCCCccchhhc--CCCCCcEEECCCCcccccccccccCCCCccEEEc------cCCcccc
Q 042271          396 K-------CYLLEGLYLSDNHLTGEIPRWLG--NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL------SNNSIFR  460 (517)
Q Consensus       396 ~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n~l~~  460 (517)
                      .       +++|+.|++++|.+. .+|..+.  .+++|+.|++++|++.+ +|..+..+++|++|++      ++|++.+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence            2       339999999999999 7787776  99999999999999997 8889999999999999      4577777


Q ss_pred             CCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC
Q 042271          461 TLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG  507 (517)
Q Consensus       461 ~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~  507 (517)
                      ..+..+. +++|++|++++|.++ .+|..+.  ++|+.|++++|++++
T Consensus       557 ~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          557 EWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            7776665 899999999999995 4454444  799999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.7e-41  Score=344.83  Aligned_cols=490  Identities=21%  Similarity=0.190  Sum_probs=339.4

Q ss_pred             cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEE
Q 042271            6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVL   85 (517)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L   85 (517)
                      ++|+|||++|  .+.+. +...+..+++|++|+|++|.+..+++++|+++++|++|+|++|++.+..+..|.++++|++|
T Consensus        53 ~~~~LdLs~N--~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFN--PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTS--CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCC--CCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            6788888888  44433 33337888888888888888888887788888888888888888876666778888888888


Q ss_pred             EccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCc----eeec
Q 042271           86 YASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE----ELIL  160 (517)
Q Consensus        86 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~----~L~l  160 (517)
                      ++++|.+++..+..|+++++|++|++++|.++. ..|..+..+++|++|++++|++.+ +....+..+.+++    .+++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhc
Confidence            888888875555567888888888888888764 356777888888888888888765 3333455444433    4556


Q ss_pred             ccCCCCCCCCCcccc----------------------cCccccccccccccc------ccccccCCCCCcceeeEeeccc
Q 042271          161 SNNHFFQSPISLEPL----------------------FNLSKRKTFDSEICA------ETESHYNSLTPKFQLTFISLSG  212 (517)
Q Consensus       161 ~~~~~~~~~~~~~~l----------------------~~l~~L~~l~l~~~~------~~~~~~~~~~~~~~L~~l~l~~  212 (517)
                      +.|.+..........                      ..+..++...+....      ........+.....+....+..
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            666542221111110                      011111111110000      0000001111111222222221


Q ss_pred             cccC---CCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccc
Q 042271          213 YIDG---GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR  289 (517)
Q Consensus       213 ~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  289 (517)
                      ....   ......+.....++.+.+..+.+.... .  +.....++.|++.++.+.....   ..++.|+.+++..+...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC
T ss_pred             hhhcccccchhhhhhhhccccccccccccccccc-c--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCC
Confidence            1111   111223344556666666666554322 1  2345678888888877654432   34567788888877665


Q ss_pred             ccCChhhhhccCCCcEEEccCCcCCC--CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccc-
Q 042271          290 GHIPVEIGTYLPGLMDLNLSRNAFNG--SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI-  366 (517)
Q Consensus       290 ~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-  366 (517)
                      . .+..  ..+++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..+.. +..+++|+.+++..+...... 
T Consensus       363 ~-~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          363 N-AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             C-BCCC--CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTS
T ss_pred             C-Cccc--ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccc
Confidence            2 2222  137889999999987752  34566778889999999888776 33332 445889999999988766543 


Q ss_pred             cccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC-CccchhhcCCCCCcEEECCCCcccccccccccCC
Q 042271          367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT-GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL  445 (517)
Q Consensus       367 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  445 (517)
                      ...+..+++++.+++++|.+....+..+..+++++.|++++|.+. ...|..+..+++|+.|++++|++.+..|..|.++
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l  517 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  517 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence            346778999999999999998778888899999999999999754 3567889999999999999999998888999999


Q ss_pred             CCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCC-CcccEEECCCCcCCCCCC
Q 042271          446 NSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDS-PHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       446 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~  510 (517)
                      ++|++|+|++|++++..+..+. +++|++|++++|++++..+..|..+ ++|++|+|++||++|.+.
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999888877666 7999999999999999999999988 689999999999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-41  Score=343.26  Aligned_cols=463  Identities=18%  Similarity=0.133  Sum_probs=318.0

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      ...++++++++  .+.+ +|.. +  .++|++|++++|.+..++..+|+++++|++|++++|.+.+..|++|.++++|++
T Consensus        31 ~~~~~l~ls~~--~L~~-ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           31 ELESMVDYSNR--NLTH-VPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             --CCEEECTTS--CCCS-CCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCC--CCcc-CCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            34467777777  4332 4432 1  267777777777777777667777777777777777777666677777777777


Q ss_pred             EEccCCccCCCCCcchhccccCcEEEccccccCCc-ccccccCCCCCcEEeccCCccccccCCCcccCCCCC--ceeecc
Q 042271           85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI--EELILS  161 (517)
Q Consensus        85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~  161 (517)
                      |++++|.++ .+|..  .+++|++|++++|.+++. .|..|.++++|++|++++|.+..    ..+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEee
Confidence            777777776 45544  677777777777777642 34667777777777777777643    134444555  777777


Q ss_pred             cCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCcc-ccccccCCcCEeeccCCcCC
Q 042271          162 NNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFP-KFLYHQHDLKNADLSHLNLS  240 (517)
Q Consensus       162 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~  240 (517)
                      +|.+.........+..+.                      . ..-.+.+..+......+ ..+..+++|+.++++++...
T Consensus       178 ~n~l~~~~~~~~~l~~l~----------------------~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  234 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPN----------------------T-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN  234 (562)
T ss_dssp             ESSCCCCSSSCCEEEECC----------------------E-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred             cccccccccCcccccccC----------------------c-ceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence            776311111111111110                      0 11133555555444333 33456778888888876421


Q ss_pred             C----CCChhhhhcccccceEeccCCccCCCccc---ccccCCcccEEEccCCcccccCChhhh----hccCCCcEEEcc
Q 042271          241 G----KFPNWLVENNANLERLLLADNSLFGSFWM---PIHSHQKLATLDVSNNFFRGHIPVEIG----TYLPGLMDLNLS  309 (517)
Q Consensus       241 ~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~  309 (517)
                      .    ..... +...+.++.+++.++.+.+....   .....++|++|++++|.+.+.+|..++    ..++.|+.+++.
T Consensus       235 ~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~  313 (562)
T 3a79_B          235 CQRLMTFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK  313 (562)
T ss_dssp             HHHHHHHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred             cchHHHHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence            0    11111 35667788888877665432111   112235899999999998877777653    224455555555


Q ss_pred             CCcCCCCCc-hhhh---cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271          310 RNAFNGSIP-SSFA---DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       310 ~~~i~~~~~-~~~~---~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      .+.+  .+| ..+.   ...+|++|++++|.+.. .+  ....+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             ccee--ecChhhhhhhhccCcceEEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence            5555  223 2222   23679999999998763 22  12468899999999999998888889999999999999999


Q ss_pred             ccccc--chhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271          386 FTGEI--LESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       386 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  462 (517)
                      +.+..  +..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+.+..+..+.  ++|++|++++|+++...
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence            98532  4568899999999999999987344 4588899999999999999876665543  79999999999998766


Q ss_pred             CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      ...+.+++|++|++++|.++..++..|..+++|+.|++++|+++|.+|.
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            6667789999999999999977666799999999999999999988763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-40  Score=344.60  Aligned_cols=361  Identities=20%  Similarity=0.265  Sum_probs=288.4

Q ss_pred             cccCCcccccccCCCCCcEEeccCCcccc-----------------ccCCCccc--CCCCCceeecccCCCCCCCCCccc
Q 042271          114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQ-----------------NISSSPLM--HLTSIEELILSNNHFFQSPISLEP  174 (517)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~  174 (517)
                      |.+++ +|..+.++++|++|++++|.+.+                 .+|. .+.  .+++|++|++++|.+ .+..+ ..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l-~~~iP-~~  510 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPN-MTQLP-DF  510 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTT-CCSCC-GG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCC-CccCh-HH
Confidence            67776 89999999999999999999976                 2666 565  999999999999973 22221 23


Q ss_pred             ccCcccccccccccccccccccCCCCCcceeeEeeccccc-cCC-CccccccccC-------CcCEeeccCCcCCCCCCh
Q 042271          175 LFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI-DGG-TFPKFLYHQH-------DLKNADLSHLNLSGKFPN  245 (517)
Q Consensus       175 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~  245 (517)
                      +.+++                        +|+.|++++|. +.+ .+|..+..++       +|+.|++++|.+. .+|.
T Consensus       511 l~~L~------------------------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          511 LYDLP------------------------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             GGGCS------------------------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             HhCCC------------------------CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            33333                        67778888776 666 6777666555       9999999999999 7877


Q ss_pred             -hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCC-CcEEEccCCcCCCCCchhhhc
Q 042271          246 -WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG-LMDLNLSRNAFNGSIPSSFAD  323 (517)
Q Consensus       246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~  323 (517)
                       ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+..
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhc
Confidence             23478999999999999988 444 8899999999999999998 88877766 778 999999999998 67777766


Q ss_pred             CCC--CcEEeccccccccccchhH--Hh--hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh--
Q 042271          324 MKM--LERVDISYNQLTGEIPERM--AA--RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS--  395 (517)
Q Consensus       324 l~~--L~~L~l~~~~i~~~~~~~~--~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--  395 (517)
                      ++.  |+.|++++|.+.+.+|...  ..  .+++|+.|++++|.+.......+..+++|+.|++++|.+.......+.  
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~  720 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK  720 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence            654  9999999999986554211  11  245899999999999865555566899999999999999843333222  


Q ss_pred             -----hcccCCeEEecCCCCCCccchhhc--CCCCCcEEECCCCcccccccccccCCCCccEEEccC------CccccCC
Q 042271          396 -----KCYLLEGLYLSDNHLTGEIPRWLG--NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN------NSIFRTL  462 (517)
Q Consensus       396 -----~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~  462 (517)
                           ++++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|+|++      |++.+..
T Consensus       721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i  798 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW  798 (876)
T ss_dssp             TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred             cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence                 3459999999999999 7787886  89999999999999996 788899999999999977      7777777


Q ss_pred             CCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271          463 PSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       463 ~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                      +..+. +++|++|++++|.++ .+|..+.  ++|+.|+|++|++...-+..+
T Consensus       799 p~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          799 PTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             hHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            76665 899999999999995 5555444  699999999999975444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-38  Score=313.83  Aligned_cols=389  Identities=19%  Similarity=0.143  Sum_probs=226.7

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCC-CcchhccccCcEEEccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDN  113 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~  113 (517)
                      +.++.+++.+..+|.  +  .++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            345666666666664  2  267777777777777666777777777777777777665333 44567777777777777


Q ss_pred             cccCCcccccccCCCCCcEEeccCCccccccC-CCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccccc
Q 042271          114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNIS-SSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAET  192 (517)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  192 (517)
                      |.+++..|.+|.++++|++|++++|.+.+..+ ...+..+++|++|++++|.+                           
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l---------------------------  141 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI---------------------------  141 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC---------------------------
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc---------------------------
Confidence            77776666777777777777777777654222 12356666666666666653                           


Q ss_pred             ccccCCCCCcceeeEeeccccccCCCcccc-ccccCCcCEeeccCCcCCCCCChhhhhcc--cccceEeccCCccCCCcc
Q 042271          193 ESHYNSLTPKFQLTFISLSGYIDGGTFPKF-LYHQHDLKNADLSHLNLSGKFPNWLVENN--ANLERLLLADNSLFGSFW  269 (517)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~  269 (517)
                                             ....|.. +..+++|+.+++++|.+.+..+..+ ..+  .+++.++++++.+.+...
T Consensus       142 -----------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~  197 (455)
T 3v47_A          142 -----------------------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNE  197 (455)
T ss_dssp             -----------------------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCST
T ss_pred             -----------------------CccCcccccCCCCcccEEeCCCCcccccChhhh-hccccccccccccccCcccccch
Confidence                                   1111221 4445566666666665554443332 111  344444444444332211


Q ss_pred             cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcC---CCCcEEeccccccccccchhHH
Q 042271          270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM---KMLERVDISYNQLTGEIPERMA  346 (517)
Q Consensus       270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l---~~L~~L~l~~~~i~~~~~~~~~  346 (517)
                      ..+..                ......+ .+++|++|++++|.+++..+..+...   ++|+.|++++|...+...    
T Consensus       198 ~~~~~----------------~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----  256 (455)
T 3v47_A          198 YWLGW----------------EKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----  256 (455)
T ss_dssp             TCTTH----------------HHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----
T ss_pred             hhccc----------------ccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----
Confidence            11000                0000000 12334444444444333322222221   334444444443221100    


Q ss_pred             hhcCCCcEEEccCCccccccccccc--CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCC
Q 042271          347 ARCFSLEILALSNNSLQGHIFSEKF--NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL  424 (517)
Q Consensus       347 ~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  424 (517)
                                 ..+.+.+.....+.  ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       257 -----------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          257 -----------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             -----------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             -----------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                       00001111111111  23567777777777766666667777777777777777776666677777777


Q ss_pred             cEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCC
Q 042271          425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN  503 (517)
Q Consensus       425 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n  503 (517)
                      ++|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+++.++..|..+++|++|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            7777777777766677777778888888888887776665554 678888888888888777777888888888888888


Q ss_pred             cCCCCCC
Q 042271          504 SLHGSIP  510 (517)
Q Consensus       504 ~~~~~~~  510 (517)
                      ++++.+|
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            8888877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.4e-38  Score=323.27  Aligned_cols=467  Identities=20%  Similarity=0.174  Sum_probs=353.7

Q ss_pred             CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271            1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT   80 (517)
Q Consensus         1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~   80 (517)
                      |+.+++||+|++++|  .+.+. +..++..+++|++|+|++|.+..++.+.|+++++|++|++++|.+++..+..|++++
T Consensus        72 f~~l~~L~~L~Ls~N--~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           72 FFSFPELQVLDLSRC--EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             TTTCTTCCEEECTTC--CCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             HhCCCCCCEEECCCC--cCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence            678999999999999  55444 333489999999999999999999988999999999999999999977778899999


Q ss_pred             CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC----cEEeccCCccccccCCCcccCCCCC
Q 042271           81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL----RVLDVSDNQLTQNISSSPLMHLTSI  155 (517)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~L~~~~~~~~~~~~~l~~l~~L  155 (517)
                      +|++|++++|.+.. ..|..++.+++|++|++++|.+++..+..+..++++    ..++++.|.+.. ++...+ ....+
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~-~~~~~  226 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRL  226 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTT-TTCEE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcccc-cchhh
Confidence            99999999999874 457788999999999999999998777777665544    478888887754 333222 22334


Q ss_pred             ceeecccCCCC-----------------------------CCCCCcccccCcccccccccccc---cccccccCCCCCcc
Q 042271          156 EELILSNNHFF-----------------------------QSPISLEPLFNLSKRKTFDSEIC---AETESHYNSLTPKF  203 (517)
Q Consensus       156 ~~L~l~~~~~~-----------------------------~~~~~~~~l~~l~~L~~l~l~~~---~~~~~~~~~~~~~~  203 (517)
                      +.+++.++...                             ........+..+..+....+...   .........+....
T Consensus       227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  306 (635)
T 4g8a_A          227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT  306 (635)
T ss_dssp             EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred             hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence            44554444210                             00011111222222222222221   11111222223334


Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      .++.+.+..+.....  ..+.....++.+++.++.+.+..+    ..++.++.+.+.++.....  .....+++|+.+++
T Consensus       307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL  378 (635)
T ss_dssp             TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred             ccccccccccccccc--cccccchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCC--cccccccccccchh
Confidence            566666666544322  234556789999999988774433    2457889999888876443  33456889999999


Q ss_pred             cCCcccc--cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc
Q 042271          284 SNNFFRG--HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS  361 (517)
Q Consensus       284 ~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~  361 (517)
                      +.+.+..  ..+..... ..+++.+++..+.... .+..+..+++|+.+++.+++.....+...+..+++++.++++.|.
T Consensus       379 s~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             CSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred             hccccccccccccchhh-hhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            9987742  33444444 7899999999998763 445678899999999999988767777777889999999999999


Q ss_pred             ccccccccccCCCCCcEEEccCccc-ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccc
Q 042271          362 LQGHIFSEKFNLTNLMTLQLDGNKF-TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI  440 (517)
Q Consensus       362 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  440 (517)
                      +.......+..++.++.|++++|.+ ....+..+..+++|++|++++|++.+..|..|.++++|++|++++|++.+..+.
T Consensus       457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  536 (635)
T 4g8a_A          457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  536 (635)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred             cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh
Confidence            9888888888999999999999975 345677889999999999999999988889999999999999999999988888


Q ss_pred             cccCCCCccEEEccCCccccCCCCCCC--cccccEEEccCCcCC
Q 042271          441 EFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIE  482 (517)
Q Consensus       441 ~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~  482 (517)
                      .|.++++|++|++++|++++..+..+.  +++|++|++++|.+.
T Consensus       537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999999999999998888776  378999999999886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=321.21  Aligned_cols=437  Identities=18%  Similarity=0.153  Sum_probs=296.7

Q ss_pred             CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271            5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV   84 (517)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~   84 (517)
                      +++++|++++|  .+.+..+.. ++.+++|++|++++|.+..+++++|.++++|++|++++|.+. .+|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N--~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQN--SISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSS--CCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCC--CccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            68999999999  555554444 899999999999999999998879999999999999999998 56655  8999999


Q ss_pred             EEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC--cEEeccCCcc--ccccCCCcccCCCC-Ccee
Q 042271           85 LYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL--RVLDVSDNQL--TQNISSSPLMHLTS-IEEL  158 (517)
Q Consensus        85 L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~l~~l~~-L~~L  158 (517)
                      |++++|.+.+ ..|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.+  .+..+. .+..+.. .-++
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l  201 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHL  201 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceEEE
Confidence            9999999985 3457899999999999999999853   45556666  9999999988  553333 5555431 1145


Q ss_pred             ecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecccccc----CCCccccccccCCcCEeec
Q 042271          159 ILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYID----GGTFPKFLYHQHDLKNADL  234 (517)
Q Consensus       159 ~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~----~~~~~~~~~~~~~L~~l~l  234 (517)
                      ++++|.+. .......+..++                        +|+.+++.++..    .......+..++.++.+++
T Consensus       202 ~l~~n~~~-~~~~~~~~~~l~------------------------~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          202 VFHPNSLF-SVQVNMSVNALG------------------------HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EECSSSCC-CCCCEEEESSEE------------------------EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             EecCccch-hhhhhhcccccc------------------------eEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            66666532 122222233333                        555555554421    0112233455666666666


Q ss_pred             cCCcCCCCCChhhh--hcccccceEeccCCccCCCccccc-----ccCCcccEEEccCCcccccCCh-hhhhc--cCCCc
Q 042271          235 SHLNLSGKFPNWLV--ENNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNFFRGHIPV-EIGTY--LPGLM  304 (517)
Q Consensus       235 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-~~~~~--~~~L~  304 (517)
                      ..+.+.+.....+.  ...++|++|++++|.+.+..+..+     ..++.|+.+++..+.+  .+|. .+...  .++++
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred             cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence            66655432111110  122477788887777765554444     5555566666665555  3442 22221  24688


Q ss_pred             EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccc--cccccCCCCCcEEEcc
Q 042271          305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI--FSEKFNLTNLMTLQLD  382 (517)
Q Consensus       305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~  382 (517)
                      +|++++|.+....  ....+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..  +..+..+++|++|+++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            8888888775322  125677888888888887754443 3455778888888888777532  3456778888888888


Q ss_pred             Cccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271          383 GNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       383 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      +|.+.+ .....+..+++|++|++++|.+.+..+..+.  ++|+.|++++|++. .+|..+..+++|++|++++|+++..
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence            888875 3334466778888888888887755544333  68888888888887 4666555888888888888888765


Q ss_pred             CCCCCC-cccccEEEccCCcCCcc
Q 042271          462 LPSCFS-PASIEQLHLSKNKIEGR  484 (517)
Q Consensus       462 ~~~~~~-~~~L~~L~l~~n~~~~~  484 (517)
                      .+..+. +++|++|++++|.+...
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          489 PDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CHHHHhcCCCCCEEEecCCCcCCC
Confidence            554233 78888888888887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.6e-37  Score=303.14  Aligned_cols=362  Identities=20%  Similarity=0.166  Sum_probs=222.6

Q ss_pred             CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccC-CccccccCCCCCcEEEccCCccCCCCCcchhccccCcEE
Q 042271           31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRG-SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL  109 (517)
Q Consensus        31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  109 (517)
                      .++|++|+++++.+..+.+..++++++|++|++++|.+.+ ..+..|.++++|++|++++|.+.+..|..++.+++|++|
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            3789999999999999977799999999999999999864 446789999999999999999998778899999999999


Q ss_pred             EccccccCCccccc--ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271          110 HIDNNDLRGSLPLC--LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE  187 (517)
Q Consensus       110 ~L~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~  187 (517)
                      ++++|.+++..+..  +..+++|++|++++|.+.+..+...+..+++|++|++++|.+...                   
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------  169 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-------------------  169 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-------------------
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-------------------
Confidence            99999998755655  999999999999999997644553488999999999999874211                   


Q ss_pred             cccccccccCCCCCcceeeEeeccccccCCCcccccccc--CCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccC
Q 042271          188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLF  265 (517)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (517)
                                                     .+..+..+  ..++.++++++.+.+..+.++..                
T Consensus       170 -------------------------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------  202 (455)
T 3v47_A          170 -------------------------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------  202 (455)
T ss_dssp             -------------------------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred             -------------------------------ChhhhhccccccccccccccCcccccchhhccc----------------
Confidence                                           11122222  57899999999887544332210                


Q ss_pred             CCcccccccCCcccEEEccCCcccccCChhhhhc--cCCCcEEEccCCcCCCC----------Cchhhhc--CCCCcEEe
Q 042271          266 GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGS----------IPSSFAD--MKMLERVD  331 (517)
Q Consensus       266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~~----------~~~~~~~--l~~L~~L~  331 (517)
                       .....+..+++|++|++++|.+++..+..+...  .++++.|++++|...+.          ....+..  .++|++|+
T Consensus       203 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  281 (455)
T 3v47_A          203 -EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD  281 (455)
T ss_dssp             -HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred             -cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence             001112234566666666666654444444331  25667777766654321          1111111  23444445


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|.+.+ .+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       282 l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          282 LSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             ecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence            54444442 22222333444444444444444443444444444444444444444333444444444444444444444


Q ss_pred             CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271          412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      +..|..+..+++|++|++++|++.+..+..+..+++|++|++++|++++
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            3334444444444444444444443333334444444444444444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-35  Score=293.73  Aligned_cols=345  Identities=25%  Similarity=0.319  Sum_probs=217.4

Q ss_pred             CcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEc
Q 042271           32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI  111 (517)
Q Consensus        32 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  111 (517)
                      +++++|+++++.+..++.  +..+++|++|++++|.+.+..+  +.++++|++|++++|.+.+. +. ++.+++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEEC
Confidence            445555555444444432  4455555555555555543322  45555555555555554422 22 455555555555


Q ss_pred             cccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccc
Q 042271          112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE  191 (517)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  191 (517)
                      ++|.+++..+  +..+++|++|++++|.+.+ ++  .+..+++|++|+++++.                           
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~~---------------------------  167 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQV---------------------------  167 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEESC---------------------------
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCcc---------------------------
Confidence            5555543221  4455555555555554432 21  24444455555443211                           


Q ss_pred             cccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc
Q 042271          192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP  271 (517)
Q Consensus       192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (517)
                                              .. . ..+..+++|+.|+++++.+.+. +.  +..+++|++|++++|.+.+..+  
T Consensus       168 ------------------------~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          168 ------------------------TD-L-KPLANLTTLERLDISSNKVSDI-SV--LAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             ------------------------CC-C-GGGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ------------------------cC-c-hhhccCCCCCEEECcCCcCCCC-hh--hccCCCCCEEEecCCccccccc--
Confidence                                    00 1 1255667777788877776642 22  3577888888888888766543  


Q ss_pred             cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      +..+++|+.|++++|.++ .++ .+. .+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++
T Consensus       217 ~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~  288 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAGLTA  288 (466)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTTCTT
T ss_pred             ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccCCCc
Confidence            667788888888888876 333 233 37888888888888875433  7778888888888888773 333  556788


Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      |+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+.  ..+..+++|+.|++++
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH  362 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence            8888888888776433  6678888888888888875443  67788888888888887754  3577788888888888


Q ss_pred             CcccccccccccCCCCccEEEccCCccccC
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      |++.+..|  +..+++|++|++++|++++.
T Consensus       363 n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          363 NQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CccCccch--hhcCCCCCEEeccCCcccCC
Confidence            88876555  67788888888888887664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-36  Score=297.14  Aligned_cols=243  Identities=26%  Similarity=0.310  Sum_probs=97.2

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      +|+.+++++|.+.+ +|.  +..+++|+.|++++|.+.+...    ..++|++|++++|.+. .+|. +. .+++|++|+
T Consensus       174 ~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~  243 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIY  243 (454)
T ss_dssp             TCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEE
T ss_pred             cccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEE
Confidence            55555555555553 332  2455556666665555543211    1135555555555554 4442 22 255555555


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      +++|.+++ ++.   .+++|++|++++|.+. .+|..    +++|+.|++++|.+++...    ..++|++|++++|.+.
T Consensus       244 l~~N~l~~-l~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          244 ADNNLLKT-LPD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIR  310 (454)
T ss_dssp             CCSSCCSS-CCS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCS
T ss_pred             CCCCcCCc-ccc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCC
Confidence            55555553 221   1245555555555555 23321    2455555555555543210    1245555555555554


Q ss_pred             cccchhhhhc-ccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc--CCCC
Q 042271          388 GEILESLSKC-YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR--TLPS  464 (517)
Q Consensus       388 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~  464 (517)
                      +..     .. ++|+.|++++|++.+ +|..   +++|+.|++++|.+.. +|.   .+++|++|++++|++++  ..|.
T Consensus       311 ~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          311 SLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             EEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence            211     11 355555555555553 3321   3555555555555552 333   24555555555555544  2222


Q ss_pred             CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC--CCCccccCC
Q 042271          465 CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG--SIPNQIGRL  516 (517)
Q Consensus       465 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~--~~~~~~~~~  516 (517)
                      .+     ..|.  .|.+.+.++.   .+++|+.|++++|++++  .+|.++++|
T Consensus       378 ~l-----~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          378 SV-----EDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             TC-----CEEE--CCC--------------------------------------
T ss_pred             HH-----Hhhh--hccccccccc---ccCcCCEEECCCCcCCccccchhhHhhe
Confidence            21     1111  1111111111   11566666666666665  666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-35  Score=290.95  Aligned_cols=348  Identities=25%  Similarity=0.328  Sum_probs=260.7

Q ss_pred             hhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcE
Q 042271           53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRV  132 (517)
Q Consensus        53 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  132 (517)
                      ..+++++.|++.++.+.. ++ .+..+++|++|++++|.+.+ .+. +..+++|++|++++|.+++..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            457899999999998873 44 37889999999999998884 444 8899999999999999985544  889999999


Q ss_pred             EeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccc
Q 042271          133 LDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG  212 (517)
Q Consensus       133 L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  212 (517)
                      |++++|.+.+ ++  .+..+++|++|++++|.+..                                             
T Consensus       117 L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~---------------------------------------------  148 (466)
T 1o6v_A          117 LTLFNNQITD-ID--PLKNLTNLNRLELSSNTISD---------------------------------------------  148 (466)
T ss_dssp             EECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECC---------------------------------------------
T ss_pred             EECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCC---------------------------------------------
Confidence            9999998865 33  37888999999998886311                                             


Q ss_pred             cccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccC
Q 042271          213 YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI  292 (517)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  292 (517)
                            . ..+..+++|+.+++. +.+.+ .+.  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..
T Consensus       149 ------~-~~~~~l~~L~~L~l~-~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          149 ------I-SALSGLTSLQQLSFG-NQVTD-LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             ------C-GGGTTCTTCSEEEEE-ESCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ------C-hhhccCCcccEeecC-CcccC-chh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc
Confidence                  1 124456677777775 33332 222  46788899999988887654  34777888888888888887433


Q ss_pred             ChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccC
Q 042271          293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN  372 (517)
Q Consensus       293 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  372 (517)
                      +  + ..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|.+.+...  +..
T Consensus       216 ~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          216 P--L-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             G--G-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             c--c-cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccC
Confidence            3  2 2378888888888888743  467788888888888888874333   5567888888888888776443  667


Q ss_pred             CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEE
Q 042271          373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD  452 (517)
Q Consensus       373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  452 (517)
                      +++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence            8888888888888875333  6778888888888888876544  67788888888888887754  4677788888888


Q ss_pred             ccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271          453 LSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       453 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      +++|++++..+ ...+++|++|++++|.+++.
T Consensus       360 l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          360 AGHNQISDLTP-LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence            88888877665 44478888888888877763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-34  Score=282.50  Aligned_cols=411  Identities=23%  Similarity=0.232  Sum_probs=246.1

Q ss_pred             CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccC-Ccchhhhhhccc-------------CcEEEecCCccc
Q 042271            4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKN-TILDQGLRQLVH-------------LQELYIGGYDLR   69 (517)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~-------------L~~L~l~~~~~~   69 (517)
                      .++||+|+++++  .+ +.+|.. ++++++|++|+++++.+. .++. .++.+++             +++|++++|.++
T Consensus        10 ~~~L~~L~l~~n--~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~   84 (454)
T 1jl5_A           10 NTFLQEPLRHSS--NL-TEMPVE-AENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLS   84 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred             cccchhhhcccC--ch-hhCChh-HhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence            467888888888  55 677766 788888888888866654 3443 5665554             488888888777


Q ss_pred             CCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcc
Q 042271           70 GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL  149 (517)
Q Consensus        70 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  149 (517)
                      + +|.   ..++|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++|++|++++|++.+ ++  .+
T Consensus        85 ~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp--~~  149 (454)
T 1jl5_A           85 S-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP--EL  149 (454)
T ss_dssp             C-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC--CC
T ss_pred             c-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc--cc
Confidence            4 333   23678888888887774 5543   3678888888887763 2321   1578888888888764 55  37


Q ss_pred             cCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCc
Q 042271          150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDL  229 (517)
Q Consensus       150 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  229 (517)
                      ..+++|++|++++|.+...+..                              ..+|+++++++|.+.+ +| .+..+++|
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~------------------------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L  197 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDL------------------------------PPSLEFIAAGNNQLEE-LP-ELQNLPFL  197 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCC------------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             CCCCCCCEEECCCCcCcccCCC------------------------------cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence            7788888888888764221110                              1278889999887766 45 57889999


Q ss_pred             CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc
Q 042271          230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS  309 (517)
Q Consensus       230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  309 (517)
                      +.+++++|.+.+ +|..    .++|++|++++|.+... + .+..+++|++|++++|.++ .+|.    .+++|++|+++
T Consensus       198 ~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~  265 (454)
T 1jl5_A          198 TAIYADNNSLKK-LPDL----PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVR  265 (454)
T ss_dssp             CEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECC
T ss_pred             CEEECCCCcCCc-CCCC----cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECC
Confidence            999999999885 4432    36899999999988743 3 4889999999999999987 4554    25799999999


Q ss_pred             CCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc
Q 042271          310 RNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE  389 (517)
Q Consensus       310 ~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  389 (517)
                      +|.+++ ++..   +++|++|++++|.+.+ ++.    ..++|+.|++++|.+++..    ...++|++|++++|.+.+ 
T Consensus       266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-  331 (454)
T 1jl5_A          266 DNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-  331 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-
T ss_pred             CCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-
Confidence            999985 4432   4889999999999884 332    1368999999999987532    123699999999999985 


Q ss_pred             cchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc--cccccccCCCCccEEEccCCccccCCCCCCC
Q 042271          390 ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS  467 (517)
Q Consensus       390 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  467 (517)
                      .+..   +++|++|++++|.+. .+|.   .+++|++|++++|++.+  .+|..+..      +  +.|.+.+..+..  
T Consensus       332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~--  394 (454)
T 1jl5_A          332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL--  394 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC----------
T ss_pred             cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc--
Confidence            3332   589999999999998 4565   57999999999999987  45555433      2  234454544442  


Q ss_pred             cccccEEEccCCcCCc--cchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271          468 PASIEQLHLSKNKIEG--RLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR  515 (517)
Q Consensus       468 ~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~  515 (517)
                      +++|++|++++|.+++  .+|      ++++.|.+.+|.+.+.+|.+.+.
T Consensus       395 ~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             --------------------------------------------------
T ss_pred             cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence            5788888888888876  333      35777788888888777765543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-34  Score=282.12  Aligned_cols=227  Identities=19%  Similarity=0.157  Sum_probs=117.3

Q ss_pred             ccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCc
Q 042271          225 HQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM  304 (517)
Q Consensus       225 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  304 (517)
                      .+++|+.+++++|.+.+ ++   +..+++|++|++++|.+.+.   .+..+++|+.|++++|.+++ +|  +. .+++|+
T Consensus       168 ~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~  236 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLT  236 (457)
T ss_dssp             TCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCS
T ss_pred             cCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc-ccCCCC
Confidence            44555555555555553 22   23455666666666655443   24555566666666666552 44  22 255666


Q ss_pred             EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc
Q 042271          305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN  384 (517)
Q Consensus       305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  384 (517)
                      .|++++|.+++..   +..+++|+.|+++++               +|+.+++++|...+..+  +..+++|+.|++++|
T Consensus       237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN  296 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred             EEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence            6666666655432   233445555554433               23334444444332222  234555555555555


Q ss_pred             ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271          385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       385 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      ...+..+.   ..++|+.|+++             ++++|+.|++++|++.+.   .+..+++|+.|++++|++++    
T Consensus       297 ~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~----  353 (457)
T 3bz5_A          297 TQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD----  353 (457)
T ss_dssp             TTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB----
T ss_pred             cccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC----
Confidence            54322221   12233333332             235666666666666652   25566666667766666654    


Q ss_pred             CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271          465 CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       465 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                         .+.|+.|.+++|.+.+.     ..+..|..+++++|.++|.+|..+
T Consensus       354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence               24555556666665544     133456666677777777666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=280.49  Aligned_cols=229  Identities=20%  Similarity=0.213  Sum_probs=133.3

Q ss_pred             cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271          252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  331 (517)
                      ++|++|++++|.+.......+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|+.|+
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            3334444444433333333455566777777777777633333333 366777777777777655555666677777777


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|.+. .++...+..+++|+.|++++|...+..+.......+|++|++++|.++......+..+++|+.|++++|.+.
T Consensus       183 l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             EESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            7777666 344444555666666666666554444333334446666666666665444445566666666666666666


Q ss_pred             CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCC
Q 042271          412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIE  482 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~  482 (517)
                      +..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+++...+..+. +++|++|++++|.+.
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            44455566666666666666666655555666666666666666666554444433 556666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=282.36  Aligned_cols=319  Identities=19%  Similarity=0.133  Sum_probs=179.8

Q ss_pred             EEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccc
Q 042271           36 FLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNND  115 (517)
Q Consensus        36 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  115 (517)
                      .+++++..+..+|. .+  .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            44555444555543 11  2355555555555554445555555555555555555554444555555555555555555


Q ss_pred             cCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccc
Q 042271          116 LRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESH  195 (517)
Q Consensus       116 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  195 (517)
                      ++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|.                               
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~-------------------------------  139 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND-------------------------------  139 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-------------------------------
T ss_pred             CCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-------------------------------
Confidence            5543334455555555555555555432 22244444555555554443                               


Q ss_pred             cCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccC
Q 042271          196 YNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSH  275 (517)
Q Consensus       196 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  275 (517)
                                                                 +.+..+.. +..+++|++|++++|.+.......+..+
T Consensus       140 -------------------------------------------l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A          140 -------------------------------------------LVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             -------------------------------------------CCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             -------------------------------------------cceeChhh-ccCCCCCCEEECCCCcCcccChhHhccc
Confidence                                                       22211211 2355677777777777666555556666


Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ++|+.|++++|.+.+ ++...+..+++|+.|++++|...+.++.......+|++|++++|.+. .++...+..+++|+.|
T Consensus       176 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  253 (477)
T 2id5_A          176 HGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFL  253 (477)
T ss_dssp             TTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEE
T ss_pred             CCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCee
Confidence            677777777766653 33333333666677777666555444444444456666666666666 5555555566666666


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      ++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            66666666555555666666666666666666555566666666666666666666555555666666666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.2e-33  Score=272.88  Aligned_cols=395  Identities=20%  Similarity=0.183  Sum_probs=244.1

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR  107 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  107 (517)
                      ++.+++|++|+++++.+..++  .++.+++|++|++++|.+.+. +  +..+++|++|++++|.+++ ++  ++.+++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~  109 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLT  109 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCC
T ss_pred             hhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCC
Confidence            567788888888887777775  478888888888888888753 3  7778888888888888874 33  77788888


Q ss_pred             EEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271          108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE  187 (517)
Q Consensus       108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~  187 (517)
                      +|++++|.+++ ++  +..+++|++|++++|++.+ +   .+..+++|++|++++|.. ....   .+..++        
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~-~~~~---~~~~l~--------  170 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKK-ITKL---DVTPQT--------  170 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSC-CCCC---CCTTCT--------
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCc-cccc---ccccCC--------
Confidence            88888888875 33  7788888888888888764 3   367778888888888752 1111   122222        


Q ss_pred             cccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC
Q 042271          188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS  267 (517)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (517)
                                      +|+.+++++|.+.+ +|  +..+++|+.+++++|.+.+. +   +..+++|+.|++++|.+.+.
T Consensus       171 ----------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i  227 (457)
T 3bz5_A          171 ----------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI  227 (457)
T ss_dssp             ----------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC
T ss_pred             ----------------cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc
Confidence                            55555565555544 22  55667777777777777653 2   35667788888887777663


Q ss_pred             cccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcC----------CCCCchhhhcCCCCcEEecccccc
Q 042271          268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAF----------NGSIPSSFADMKMLERVDISYNQL  337 (517)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i----------~~~~~~~~~~l~~L~~L~l~~~~i  337 (517)
                      .   +..+++|+.|++++|.+++ ++.   ..+++|+.|+++++.+          .+.++  +..+++|+.|++++|..
T Consensus       228 p---~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          228 D---VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             C---CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             C---ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence            2   6677778888888887763 332   1256666666655432          22222  23444555555555544


Q ss_pred             ccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchh
Q 042271          338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW  417 (517)
Q Consensus       338 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  417 (517)
                      .+.+|.    ..++|+.++             +..+++|++|++++|.+++.   .+..+++|+.|++++|++.+     
T Consensus       299 l~~l~~----~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-----  353 (457)
T 3bz5_A          299 LYLLDC----QAAGITELD-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-----  353 (457)
T ss_dssp             CCEEEC----TTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-----
T ss_pred             cceecc----CCCcceEec-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-----
Confidence            333332    122333332             33446788888888887753   26777888888888887763     


Q ss_pred             hcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC--cccccEEEccCCcCCccc--hhhhcCC-
Q 042271          418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRL--ESIIHDS-  492 (517)
Q Consensus       418 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~--~~~l~~~-  492 (517)
                         ++.|+.|.+.+|.+.+.     ..+..|+.+++++|++++..|..+.  ...+.......+......  .-...+. 
T Consensus       354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~  425 (457)
T 3bz5_A          354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLS  425 (457)
T ss_dssp             ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCC
T ss_pred             ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEecc
Confidence               24556666777777653     2445677788888888877765443  223333333322211000  0001111 


Q ss_pred             ----CcccEEECCCCcCCCCCCcccc
Q 042271          493 ----PHLVTLDLSCNSLHGSIPNQIG  514 (517)
Q Consensus       493 ----~~L~~l~l~~n~~~~~~~~~~~  514 (517)
                          .-+.+...++|.++|.|+..+.
T Consensus       426 ~~~~~~~y~~~~~~~~fsG~i~~p~~  451 (457)
T 3bz5_A          426 TDNPAVTYTFTSENGAIVGTVTTPFE  451 (457)
T ss_dssp             TTSCEECEEEECTTSSEEEEEEEEBC
T ss_pred             CCCceEEEEEecCCcEEeeEeccccc
Confidence                1344445557778877766553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-31  Score=253.78  Aligned_cols=306  Identities=25%  Similarity=0.355  Sum_probs=177.1

Q ss_pred             hhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCc
Q 042271           52 LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR  131 (517)
Q Consensus        52 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  131 (517)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + .++..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            5677788888888877763 33 36777788888888777773 333 7777778888887777764 2 3577777777


Q ss_pred             EEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecc
Q 042271          132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS  211 (517)
Q Consensus       132 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  211 (517)
                      +|++++|.+.+ ++.  +..+++|++|++++|....                                            
T Consensus       114 ~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~--------------------------------------------  146 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLS--------------------------------------------  146 (347)
T ss_dssp             EEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCC--------------------------------------------
T ss_pred             EEECcCCcccC-chh--hccCCceeEEECCCCCCcc--------------------------------------------
Confidence            77777777653 322  6667777777777664100                                            


Q ss_pred             ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc
Q 042271          212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH  291 (517)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  291 (517)
                            . +..+..+++|+.++++++.+.                         +...  +..+++|++|++++|.+. .
T Consensus       147 ------~-~~~~~~l~~L~~L~l~~~~~~-------------------------~~~~--~~~l~~L~~L~l~~n~l~-~  191 (347)
T 4fmz_A          147 ------D-LSPLSNMTGLNYLTVTESKVK-------------------------DVTP--IANLTDLYSLSLNYNQIE-D  191 (347)
T ss_dssp             ------C-CGGGTTCTTCCEEECCSSCCC-------------------------CCGG--GGGCTTCSEEECTTSCCC-C
T ss_pred             ------c-ccchhhCCCCcEEEecCCCcC-------------------------Cchh--hccCCCCCEEEccCCccc-c
Confidence                  0 111233444444444444443                         2211  334445555555555544 2


Q ss_pred             CChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc
Q 042271          292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF  371 (517)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  371 (517)
                      ++.  ...+++|+.+++++|.+.+..+  +..+++|++|++++|.+. ..+.  +..+++|+.|++++|.+++.  ..+.
T Consensus       192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~  262 (347)
T 4fmz_A          192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVK  262 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred             ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence            222  2225566666666665553322  555666666666666655 2222  34455666666666655542  3355


Q ss_pred             CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271          372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL  451 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  451 (517)
                      .+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+  +..+++|++|
T Consensus       263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  338 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA  338 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred             cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence            566666666666666542  345566666666666666665555666666666666666666664433  5556666666


Q ss_pred             EccCCcc
Q 042271          452 DLSNNSI  458 (517)
Q Consensus       452 ~l~~n~l  458 (517)
                      ++++|++
T Consensus       339 ~l~~N~i  345 (347)
T 4fmz_A          339 DFANQVI  345 (347)
T ss_dssp             SSSCC--
T ss_pred             ehhhhcc
Confidence            6666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.2e-31  Score=251.22  Aligned_cols=307  Identities=24%  Similarity=0.340  Sum_probs=212.1

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR  107 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  107 (517)
                      ...+++|++|+++++.+..++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.. + +.+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            4578999999999999988864  8999999999999999985444  8999999999999999984 4 4699999999


Q ss_pred             EEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271          108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE  187 (517)
Q Consensus       108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~  187 (517)
                      +|++++|.+++. +. +..+++|++|++++|......+  .+..+++|++|++++|.+..                    
T Consensus       114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~--------------------  169 (347)
T 4fmz_A          114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKD--------------------  169 (347)
T ss_dssp             EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCC--------------------
T ss_pred             EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCC--------------------
Confidence            999999999854 33 8899999999999997654333  48889999999999887310                    


Q ss_pred             cccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC
Q 042271          188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS  267 (517)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (517)
                                                     .+ .+..+++|+.+++++|.+.+. +.  +..+++|+.++++++.+.+.
T Consensus       170 -------------------------------~~-~~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          170 -------------------------------VT-PIANLTDLYSLSLNYNQIEDI-SP--LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             -------------------------------CG-GGGGCTTCSEEECTTSCCCCC-GG--GGGCTTCCEEECCSSCCCCC
T ss_pred             -------------------------------ch-hhccCCCCCEEEccCCccccc-cc--ccCCCccceeecccCCCCCC
Confidence                                           01 134556677777777666532 22  23444555555554444332


Q ss_pred             cccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHh
Q 042271          268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAA  347 (517)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~  347 (517)
                      ..  +..                         +++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++  .+.
T Consensus       215 ~~--~~~-------------------------~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~  262 (347)
T 4fmz_A          215 TP--VAN-------------------------MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVK  262 (347)
T ss_dssp             GG--GGG-------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGT
T ss_pred             ch--hhc-------------------------CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHh
Confidence            21  333                         5555556665555553222  5556666666666665552 22  234


Q ss_pred             hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEE
Q 042271          348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI  427 (517)
Q Consensus       348 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  427 (517)
                      .+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|  +..+++|++|
T Consensus       263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  338 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA  338 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred             cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence            466666666666666543  345567777777777777766666677777777777777777775444  6677777777


Q ss_pred             ECCCCccc
Q 042271          428 IMPNNNLE  435 (517)
Q Consensus       428 ~l~~~~~~  435 (517)
                      ++++|.+.
T Consensus       339 ~l~~N~i~  346 (347)
T 4fmz_A          339 DFANQVIK  346 (347)
T ss_dssp             SSSCC---
T ss_pred             ehhhhccc
Confidence            77777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-31  Score=257.67  Aligned_cols=310  Identities=22%  Similarity=0.236  Sum_probs=186.8

Q ss_pred             CCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEE
Q 042271           30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL  109 (517)
Q Consensus        30 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  109 (517)
                      .++++++|+++++.+..++...+..+++|++|++++|.+.+..+.++..+++|++|++++|.+.+..|..++.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            34667777777777777776667777777777777777765556667777777777777777775555566777777777


Q ss_pred             EccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccc
Q 042271          110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEIC  189 (517)
Q Consensus       110 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  189 (517)
                      ++++|.++...+..|..+++|++|++++|.+.+ +++..+..+++|++|++++|.+                        
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l------------------------  177 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL------------------------  177 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCC------------------------
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcC------------------------
Confidence            777777764433445677777777777777654 3333566667777777766653                        


Q ss_pred             cccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271          190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW  269 (517)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  269 (517)
                                                                        .+. +   ...+++|+.++++++.+..   
T Consensus       178 --------------------------------------------------~~~-~---~~~l~~L~~L~l~~n~l~~---  200 (390)
T 3o6n_A          178 --------------------------------------------------THV-D---LSLIPSLFHANVSYNLLST---  200 (390)
T ss_dssp             --------------------------------------------------SBC-C---GGGCTTCSEEECCSSCCSE---
T ss_pred             --------------------------------------------------Ccc-c---cccccccceeecccccccc---
Confidence                                                              111 0   1123344444444443322   


Q ss_pred             cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhc
Q 042271          270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARC  349 (517)
Q Consensus       270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~  349 (517)
                        +...+.|++|++++|.+. .++...   +++|+.|++++|.+++.  ..+..+++|++|++++|.+.+ ++...+..+
T Consensus       201 --~~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l  271 (390)
T 3o6n_A          201 --LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKM  271 (390)
T ss_dssp             --EECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTC
T ss_pred             --cCCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHcccc
Confidence              112235566666666554 222221   35677777777766643  456666777777777776663 333344456


Q ss_pred             CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEEC
Q 042271          350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIM  429 (517)
Q Consensus       350 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  429 (517)
                      ++|+.|++++|.+++. +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|++... +  +..+++|+.|++
T Consensus       272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence            6666777766666542 223345666777777777665 3444556666777777777766532 2  455566666666


Q ss_pred             CCCccc
Q 042271          430 PNNNLE  435 (517)
Q Consensus       430 ~~~~~~  435 (517)
                      ++|++.
T Consensus       347 ~~N~~~  352 (390)
T 3o6n_A          347 SHNDWD  352 (390)
T ss_dssp             CSSCEE
T ss_pred             CCCCcc
Confidence            666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-31  Score=257.94  Aligned_cols=310  Identities=21%  Similarity=0.188  Sum_probs=217.1

Q ss_pred             CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271            3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL   82 (517)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   82 (517)
                      .++++|+|+++++  .+ +.++...+..+++|++|+++++.+..++...|+.+++|++|++++|.+.+..+..+.++++|
T Consensus        43 ~l~~l~~l~l~~~--~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNS--TM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESC--EE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCC--ch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            3589999999999  44 34555557899999999999999999988899999999999999999998888899999999


Q ss_pred             cEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271           83 QVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN  162 (517)
Q Consensus        83 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (517)
                      ++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. +   .+..+++|+++++++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeeccc
Confidence            999999999994433446899999999999999998888889999999999999999865 2   367788999999998


Q ss_pred             CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271          163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK  242 (517)
Q Consensus       163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  242 (517)
                      |.+...                                                       ...+.++.++++++.+...
T Consensus       196 n~l~~~-------------------------------------------------------~~~~~L~~L~l~~n~l~~~  220 (390)
T 3o6n_A          196 NLLSTL-------------------------------------------------------AIPIAVEELDASHNSINVV  220 (390)
T ss_dssp             SCCSEE-------------------------------------------------------ECCSSCSEEECCSSCCCEE
T ss_pred             cccccc-------------------------------------------------------CCCCcceEEECCCCeeeec
Confidence            863110                                                       0112345555555544422


Q ss_pred             CChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhh
Q 042271          243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA  322 (517)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  322 (517)
                       +.   ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++ ++..+.
T Consensus       221 -~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~  292 (390)
T 3o6n_A          221 -RG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQ  292 (390)
T ss_dssp             -EC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSS
T ss_pred             -cc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccC
Confidence             11   1234566666666655443  34555566666666666665433444333 5666666666666653 333445


Q ss_pred             cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       323 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      .+++|++|++++|.+. .++..+ ..+++|+.|++++|.+++.   .+..+++|+.|++++|++.
T Consensus       293 ~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence            5666666666666665 444433 3356666666666666543   2445566666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2e-34  Score=285.51  Aligned_cols=388  Identities=20%  Similarity=0.142  Sum_probs=203.7

Q ss_pred             CcceEEeccccccCCcchhh-hhhcccCcEEEecCCcccC----CccccccCCCCCcEEEccCCccCCCCCcchh-ccc-
Q 042271           32 PSLKFLSLINSSKNTILDQG-LRQLVHLQELYIGGYDLRG----SLPWCLANMTSLQVLYASSNELTGNISPGLC-ELV-  104 (517)
Q Consensus        32 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~-  104 (517)
                      +.|++|+++++.+....... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56677777766665544323 6677777777777777653    2355666777777888777776643333332 233 


Q ss_pred             ---cCcEEEccccccCC----cccccccCCCCCcEEeccCCccccccCC----CcccCCCCCceeecccCCCCCCCCCcc
Q 042271          105 ---LMRELHIDNNDLRG----SLPLCLANLTSLRVLDVSDNQLTQNISS----SPLMHLTSIEELILSNNHFFQSPISLE  173 (517)
Q Consensus       105 ---~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~  173 (517)
                         +|++|++++|.+++    .++..+..+++|++|++++|.+.+....    ......++|++|++++|.+....    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----  158 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS----  158 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence               58888888887763    3466777788888888888776532111    01122456777777766531100    


Q ss_pred             cccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhh----
Q 042271          174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVE----  249 (517)
Q Consensus       174 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~----  249 (517)
                                                                ...++..+..+++|++|++++|.+.+..+..+..    
T Consensus       159 ------------------------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  196 (461)
T 1z7x_W          159 ------------------------------------------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD  196 (461)
T ss_dssp             ------------------------------------------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence                                                      0012334445566666777666655433333322    


Q ss_pred             cccccceEeccCCccCCC----cccccccCCcccEEEccCCcccccCChh----hhhccCCCcEEEccCCcCCCC----C
Q 042271          250 NNANLERLLLADNSLFGS----FWMPIHSHQKLATLDVSNNFFRGHIPVE----IGTYLPGLMDLNLSRNAFNGS----I  317 (517)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~~----~  317 (517)
                      ..++|++|++++|.+.+.    ....+..+++|++|++++|.+++.....    +...+++|++|++++|.+++.    +
T Consensus       197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence            234666666666665543    2233445566666666666554221111    111245566666666655532    3


Q ss_pred             chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc----cchh
Q 042271          318 PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE----ILES  393 (517)
Q Consensus       318 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  393 (517)
                      +..+..+++|++|++++|.+.+..+..+...+                    ....++|++|++++|.+++.    .+..
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETL--------------------LEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------------TSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------------ccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            34444555566666665555432222222111                    00123444444444444322    1233


Q ss_pred             hhhcccCCeEEecCCCCCCccchhhcC-----CCCCcEEECCCCcccc----cccccccCCCCccEEEccCCccccCCCC
Q 042271          394 LSKCYLLEGLYLSDNHLTGEIPRWLGN-----LSALEDIIMPNNNLEG----PIPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       394 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      +..+++|++|++++|.+.+..+..+..     .++|++|++++|.+.+    .++..+..+++|++|++++|++++....
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~  416 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL  416 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHH
Confidence            344455555555555554322222211     4456666666665553    3455555666666666666666443221


Q ss_pred             CCC------cccccEEEccCCcCCccc
Q 042271          465 CFS------PASIEQLHLSKNKIEGRL  485 (517)
Q Consensus       465 ~~~------~~~L~~L~l~~n~~~~~~  485 (517)
                      .+.      ...|+.|.+.++.+....
T Consensus       417 ~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          417 QLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHHhccCCcchhheeecccccCHHH
Confidence            111      235777777776665443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=5.2e-34  Score=282.43  Aligned_cols=379  Identities=22%  Similarity=0.188  Sum_probs=247.1

Q ss_pred             ccCcEEEecCCcccCCccc-cccCCCCCcEEEccCCccCCC----CCcchhccccCcEEEccccccCCccccccc-CCC-
Q 042271           56 VHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSNELTGN----ISPGLCELVLMRELHIDNNDLRGSLPLCLA-NLT-  128 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~-  128 (517)
                      ++|++|+++++.+...... .+..+++|++|++++|.+...    ++..+..+++|++|++++|.+++..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4667777777766533322 256666777777777666532    233455556666666666666543332222 233 


Q ss_pred             ---CCcEEeccCCcccc----ccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCC
Q 042271          129 ---SLRVLDVSDNQLTQ----NISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTP  201 (517)
Q Consensus       129 ---~L~~L~L~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~  201 (517)
                         +|++|++++|.+.+    .++. .+..+++|++|++++|.                                     
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-------------------------------------  124 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNL-------------------------------------  124 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSB-------------------------------------
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCc-------------------------------------
Confidence               46666666666542    1122 34555555555555554                                     


Q ss_pred             cceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhh----hcccccceEeccCCccCCCc----ccccc
Q 042271          202 KFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLV----ENNANLERLLLADNSLFGSF----WMPIH  273 (517)
Q Consensus       202 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~  273 (517)
                                                           +.+..+..+.    ...++|++|++++|.+.+..    ...+.
T Consensus       125 -------------------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  167 (461)
T 1z7x_W          125 -------------------------------------LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR  167 (461)
T ss_dssp             -------------------------------------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             -------------------------------------CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence                                                 2222111111    11234666666666554422    23345


Q ss_pred             cCCcccEEEccCCcccccCChhhhh----ccCCCcEEEccCCcCCCC----CchhhhcCCCCcEEeccccccccccc---
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGT----YLPGLMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIP---  342 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~---  342 (517)
                      .+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+...   
T Consensus       168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  247 (461)
T 1z7x_W          168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL  247 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence            5678888888888776433333332    245899999999988854    46677889999999999998874432   


Q ss_pred             -hhHHhhcCCCcEEEccCCccccc----ccccccCCCCCcEEEccCcccccccchhhhhc-----ccCCeEEecCCCCCC
Q 042271          343 -ERMAARCFSLEILALSNNSLQGH----IFSEKFNLTNLMTLQLDGNKFTGEILESLSKC-----YLLEGLYLSDNHLTG  412 (517)
Q Consensus       343 -~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~  412 (517)
                       ..++..+++|+.|++++|.+++.    ....+..+++|++|++++|.+.+.....+...     ++|++|++++|.+.+
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence             23333578999999999988864    34456678999999999999876555555443     699999999999886


Q ss_pred             c----cchhhcCCCCCcEEECCCCcccccccccccC-----CCCccEEEccCCcccc----CCCCCCC-cccccEEEccC
Q 042271          413 E----IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-----LNSLKILDLSNNSIFR----TLPSCFS-PASIEQLHLSK  478 (517)
Q Consensus       413 ~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~-~~~L~~L~l~~  478 (517)
                      .    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|++++    ..+..+. +++|++|++++
T Consensus       328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence            4    4667778899999999999987654444432     6799999999999875    3333322 79999999999


Q ss_pred             CcCCccchhhhc-----CCCcccEEECCCCcCCCCC
Q 042271          479 NKIEGRLESIIH-----DSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       479 n~~~~~~~~~l~-----~~~~L~~l~l~~n~~~~~~  509 (517)
                      |.+++.....+.     ....|+.|++.++.++...
T Consensus       408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            999865333322     2357999999888876443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.1e-30  Score=263.80  Aligned_cols=310  Identities=21%  Similarity=0.230  Sum_probs=189.8

Q ss_pred             CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271           31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH  110 (517)
Q Consensus        31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  110 (517)
                      ++.++.++++++.+..++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45566666666666666665666666666666666666655555666666666666666666655555566666666666


Q ss_pred             ccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccc
Q 042271          111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA  190 (517)
Q Consensus       111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  190 (517)
                      +++|.+++..+..|..+++|++|++++|.+.+ +++..+..+++|++|++++|.+                         
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l-------------------------  183 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL-------------------------  183 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCC-------------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCC-------------------------
Confidence            66666664444445666666666666666654 3333566666666666666552                         


Q ss_pred             ccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCccc
Q 042271          191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM  270 (517)
Q Consensus       191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (517)
                                                                       .+. +   ...+++|+.|++++|.+.+    
T Consensus       184 -------------------------------------------------~~~-~---~~~l~~L~~L~l~~n~l~~----  206 (597)
T 3oja_B          184 -------------------------------------------------THV-D---LSLIPSLFHANVSYNLLST----  206 (597)
T ss_dssp             -------------------------------------------------SBC-C---GGGCTTCSEEECCSSCCSE----
T ss_pred             -------------------------------------------------CCc-C---hhhhhhhhhhhcccCcccc----
Confidence                                                             211 1   1223444444444443322    


Q ss_pred             ccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcC
Q 042271          271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF  350 (517)
Q Consensus       271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~  350 (517)
                       +...+.|+.|++++|.+. .++...   .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..| ..+..++
T Consensus       207 -l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~  278 (597)
T 3oja_B          207 -LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ  278 (597)
T ss_dssp             -EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-GGGTTCS
T ss_pred             -ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH-HHhcCcc
Confidence             122235566666666554 222221   35677777777776642  556677777777777777763333 3445577


Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECC
Q 042271          351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP  430 (517)
Q Consensus       351 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  430 (517)
                      +|+.|++++|.+++. +..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.+. +  +..+++|+.|+++
T Consensus       279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence            777777777776653 334456777888888887776 4555667778888888888877643 2  5666777888888


Q ss_pred             CCcccc
Q 042271          431 NNNLEG  436 (517)
Q Consensus       431 ~~~~~~  436 (517)
                      +|.+..
T Consensus       354 ~N~~~~  359 (597)
T 3oja_B          354 HNDWDC  359 (597)
T ss_dssp             SSCEEH
T ss_pred             CCCCCC
Confidence            777753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.6e-30  Score=264.53  Aligned_cols=310  Identities=21%  Similarity=0.190  Sum_probs=225.5

Q ss_pred             CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271            3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL   82 (517)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   82 (517)
                      .+++++.++++++  .+ +.++...+..+++|++|+++++.+..++...|+.+++|++|++++|.+.+..|..|.++++|
T Consensus        49 ~l~~l~~l~l~~~--~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNS--TM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSC--EE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCC--CC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            3578899999999  44 34555558899999999999999999988899999999999999999998888889999999


Q ss_pred             cEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271           83 QVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN  162 (517)
Q Consensus        83 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~  162 (517)
                      ++|++++|.+....+..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.+ +   .+..+++|++|++++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEEECCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c---Chhhhhhhhhhhccc
Confidence            999999999995444457999999999999999998888899999999999999999865 2   366788999999998


Q ss_pred             CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271          163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK  242 (517)
Q Consensus       163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  242 (517)
                      |.+..                                                       +.....|+.+++++|.+...
T Consensus       202 n~l~~-------------------------------------------------------l~~~~~L~~L~ls~n~l~~~  226 (597)
T 3oja_B          202 NLLST-------------------------------------------------------LAIPIAVEELDASHNSINVV  226 (597)
T ss_dssp             SCCSE-------------------------------------------------------EECCTTCSEEECCSSCCCEE
T ss_pred             Ccccc-------------------------------------------------------ccCCchhheeeccCCccccc
Confidence            86311                                                       01112344555555544421


Q ss_pred             CChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhh
Q 042271          243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA  322 (517)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  322 (517)
                      .+.    ..++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++ ++..+.
T Consensus       227 ~~~----~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~  298 (597)
T 3oja_B          227 RGP----VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQ  298 (597)
T ss_dssp             ECS----CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCE-EECSSS
T ss_pred             ccc----cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCC-CCcccc
Confidence            111    124566666666665543  44556666777777777666444544444 6677777777776663 344455


Q ss_pred             cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       323 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+.   .+..+++|+.|++++|++.
T Consensus       299 ~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             cCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence            5677777777777766 555444 3467777777777776543   2455677777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.2e-31  Score=272.16  Aligned_cols=421  Identities=14%  Similarity=0.074  Sum_probs=214.5

Q ss_pred             CCCcCceeeCCCcccccc--cc-----------chhhccCCCCcceEEeccccccCCcchhhhhh-ccc-CcEEEecCCc
Q 042271            3 KFKNLEHLDMGEVQVDVN--TS-----------FLQIVGESKPSLKFLSLINSSKNTILDQGLRQ-LVH-LQELYIGGYD   67 (517)
Q Consensus         3 ~l~~L~~L~l~~~~~~~~--~~-----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~   67 (517)
                      ++++|++|++++++ .+.  +.           ........++.|++|+++++.+.......+.. ++. |++|++++|.
T Consensus        71 ~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           71 RFPNLRSLKLKGKP-RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             HCTTCSEEEEECSC-GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             hCCCCeEEEecCCc-chhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence            46778888887752 111  00           11111236778888888876655443334544 334 8888887775


Q ss_pred             c-cC-CccccccCCCCCcEEEccCCccCCCCC----cchhccccCcEEEccccccCC----cccccccCCCCCcEEeccC
Q 042271           68 L-RG-SLPWCLANMTSLQVLYASSNELTGNIS----PGLCELVLMRELHIDNNDLRG----SLPLCLANLTSLRVLDVSD  137 (517)
Q Consensus        68 ~-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~  137 (517)
                      . .. .++.....+++|++|++++|.+.+...    .....+++|++|++++|.+++    .++..+.++++|++|++++
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence            2 11 122333467788888888887654422    234567788888888877752    3344456778888888888


Q ss_pred             CccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCC
Q 042271          138 NQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGG  217 (517)
Q Consensus       138 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  217 (517)
                      |.+.+ ++. .+..+++|++|+++........                                               .
T Consensus       230 ~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~-----------------------------------------------~  260 (592)
T 3ogk_B          230 FEILE-LVG-FFKAAANLEEFCGGSLNEDIGM-----------------------------------------------P  260 (592)
T ss_dssp             CBGGG-GHH-HHHHCTTCCEEEECBCCCCTTC-----------------------------------------------T
T ss_pred             ccHHH-HHH-HHhhhhHHHhhcccccccccch-----------------------------------------------H
Confidence            77654 333 5667778888877653211000                                               0


Q ss_pred             CccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc-cccccCCcccEEEccCCcccccCChhh
Q 042271          218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW-MPIHSHQKLATLDVSNNFFRGHIPVEI  296 (517)
Q Consensus       218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~  296 (517)
                      ..+..+..+++|+.+.+.+.... .++. ++..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.+.....+
T Consensus       261 ~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~  337 (592)
T 3ogk_B          261 EKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL  337 (592)
T ss_dssp             TSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred             HHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence            11112222334444444332111 2222 12344555555555554332211 123445555555555 22222222233


Q ss_pred             hhccCCCcEEEccC-----------CcCCCC-CchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc----CC
Q 042271          297 GTYLPGLMDLNLSR-----------NAFNGS-IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS----NN  360 (517)
Q Consensus       297 ~~~~~~L~~L~l~~-----------~~i~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~----~n  360 (517)
                      ...+++|++|++++           +.+++. .......+++|++|+++.+.+++.....+...+++|+.|+++    .+
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            33355666666662           233321 111233456666666655555544444444446666666664    33


Q ss_pred             ccccc-----ccccccCCCCCcEEEccCcc--cccccchhhhh-cccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCC
Q 042271          361 SLQGH-----IFSEKFNLTNLMTLQLDGNK--FTGEILESLSK-CYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       361 ~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~  431 (517)
                      .+++.     ....+..+++|+.|++++|.  +++.....+.. +++|++|++++|++.+ .++..+.++++|++|++++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            34332     11223446666666665433  33333333332 5666666666666654 2334445666666666666


Q ss_pred             Cccccc-ccccccCCCCccEEEccCCccccCCCCCCC--cccccEEEc
Q 042271          432 NNLEGP-IPIEFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHL  476 (517)
Q Consensus       432 ~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l  476 (517)
                      |.+.+. .+..+..+++|++|++++|++++.....+.  ++.+....+
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI  545 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence            665432 222334566666666666666554433332  344444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.3e-28  Score=230.31  Aligned_cols=289  Identities=22%  Similarity=0.186  Sum_probs=235.8

Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +++.+++.++... .+|..+  .+.++.++++++.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5666666665543 334333  257899999999988554434 478899999999999998877788899999999999


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc-ccchhHHhhcCCCcEEEccCCcc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALSNNSL  362 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~n~~  362 (517)
                      ++|.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.+.. ......+..+++|+.|++++|.+
T Consensus       108 s~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            999987 667655   3689999999999998778889999999999999998863 24445667799999999999998


Q ss_pred             cccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271          363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF  442 (517)
Q Consensus       363 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  442 (517)
                      +.... .+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus       184 ~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            75432 22  389999999999998777888999999999999999998766778999999999999999998 678888


Q ss_pred             cCCCCccEEEccCCccccCCCCCCC-------cccccEEEccCCcCCc--cchhhhcCCCcccEEECCCCc
Q 042271          443 CQLNSLKILDLSNNSIFRTLPSCFS-------PASIEQLHLSKNKIEG--RLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       443 ~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      ..+++|++|++++|++++..+..+.       ..+++.|++++|.+..  +.+..|..+++++.+++++|+
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            9999999999999999887777664       3788999999999864  567889999999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=5.1e-31  Score=269.50  Aligned_cols=410  Identities=14%  Similarity=0.091  Sum_probs=215.8

Q ss_pred             chhhhhhcccCcEEEecCCccc---CCcccc------------ccCCCCCcEEEccCCccCCCCCcchhc-ccc-CcEEE
Q 042271           48 LDQGLRQLVHLQELYIGGYDLR---GSLPWC------------LANMTSLQVLYASSNELTGNISPGLCE-LVL-MRELH  110 (517)
Q Consensus        48 ~~~~l~~l~~L~~L~l~~~~~~---~~~~~~------------l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~  110 (517)
                      +...+..+++|++|+++++...   +..|..            ...+++|++|++++|.+++..+..+.. ++. |++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            3446677788888888765421   111111            125777888888777666544444554 334 88888


Q ss_pred             ccccc-cCC-cccccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecccCCCCCCCCCcccccCcccccccc
Q 042271          111 IDNND-LRG-SLPLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD  185 (517)
Q Consensus       111 L~~~~-~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~  185 (517)
                      +++|. ++. .++.....+++|++|++++|.+.+....   .....+++|++|++++|.+...  .              
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~--------------  208 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--S--------------  208 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--C--------------
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--C--------------
Confidence            87775 221 1222234677788888887776432100   0234567777777776653100  0              


Q ss_pred             cccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccC
Q 042271          186 SEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLF  265 (517)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (517)
                                                    ...++..+..+++|+.|++.++.+.+ ++. .+..+++|++|.++.....
T Consensus       209 ------------------------------~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~  256 (592)
T 3ogk_B          209 ------------------------------PKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNED  256 (592)
T ss_dssp             ------------------------------HHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCC
T ss_pred             ------------------------------HHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccc
Confidence                                          01223334445566666666655543 332 2345566666666532211


Q ss_pred             ---CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCc-hhhhcCCCCcEEecccccccccc
Q 042271          266 ---GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERVDISYNQLTGEI  341 (517)
Q Consensus       266 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~i~~~~  341 (517)
                         ......+..+++|+.++++++... .++..... +++|++|++++|.+++... ..+..+++|++|+++ +.+.+..
T Consensus       257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~  333 (592)
T 3ogk_B          257 IGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG  333 (592)
T ss_dssp             TTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH
T ss_pred             cchHHHHHHhhccccccccCccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH
Confidence               122234455566666666654322 33333322 5666666666666543222 234566666666666 3333333


Q ss_pred             chhHHhhcCCCcEEEccC-----------Cccccccccc-ccCCCCCcEEEccCcccccccchhhhh-cccCCeEEec--
Q 042271          342 PERMAARCFSLEILALSN-----------NSLQGHIFSE-KFNLTNLMTLQLDGNKFTGEILESLSK-CYLLEGLYLS--  406 (517)
Q Consensus       342 ~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~--  406 (517)
                      ...+...+++|++|++++           +.+++..... ...+++|++|++..+.+++.....+.. +++|+.|+++  
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence            344445566666666662           3343322111 234666677666666665544444443 6666666664  


Q ss_pred             --CCCCCCc-----cchhhcCCCCCcEEECCCCc--ccccccccc-cCCCCccEEEccCCccccCCCC-C-CCcccccEE
Q 042271          407 --DNHLTGE-----IPRWLGNLSALEDIIMPNNN--LEGPIPIEF-CQLNSLKILDLSNNSIFRTLPS-C-FSPASIEQL  474 (517)
Q Consensus       407 --~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~-~~~~~L~~L  474 (517)
                        .+.+++.     ++..+.++++|++|+++.|.  +.+.....+ ..+++|++|++++|++++.... . ..+++|++|
T Consensus       414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence              3444432     33335556667777665443  333222222 2356677777766666442211 1 125667777


Q ss_pred             EccCCcCCcc-chhhhcCCCcccEEECCCCcCCCC
Q 042271          475 HLSKNKIEGR-LESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       475 ~l~~n~~~~~-~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      ++++|.+++. ++.....+++|++|++++|++++.
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            7777666543 333445566777777777766643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=6.9e-30  Score=238.14  Aligned_cols=249  Identities=23%  Similarity=0.303  Sum_probs=167.8

Q ss_pred             cccceEeccCCccCC--CcccccccCCcccEEEccC-CcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271          252 ANLERLLLADNSLFG--SFWMPIHSHQKLATLDVSN-NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE  328 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~  328 (517)
                      .++++|+++++.+.+  ..+..+..+++|++|++++ +.+.+.+|..+.. +++|++|++++|.+++.++..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            345566666666555  4455566666666666663 6665566665554 66777777777776666666677777777


Q ss_pred             EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCC-CCcEEEccCcccccccchhhhhcccCCeEEecC
Q 042271          329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT-NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD  407 (517)
Q Consensus       329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (517)
                      +|++++|.+.+.+|.. +..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+. |+.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            7777777766545443 33466777777777776655666666666 777777777777666666666665 77777777


Q ss_pred             CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccch
Q 042271          408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~  486 (517)
                      |.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++..+..+. +++|++|++++|.+++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            777666667777777777777777777654443 66677777777777777666665554 6777777777777776666


Q ss_pred             hhhcCCCcccEEECCCCcC
Q 042271          487 SIIHDSPHLVTLDLSCNSL  505 (517)
Q Consensus       487 ~~l~~~~~L~~l~l~~n~~  505 (517)
                      .. ..+++|+.+++++|+.
T Consensus       286 ~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSE
T ss_pred             CC-ccccccChHHhcCCCC
Confidence            54 6677788888888873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2e-29  Score=235.07  Aligned_cols=237  Identities=30%  Similarity=0.432  Sum_probs=216.4

Q ss_pred             CcccEEEccCCcccc--cCChhhhhccCCCcEEEccC-CcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCC
Q 042271          276 QKLATLDVSNNFFRG--HIPVEIGTYLPGLMDLNLSR-NAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL  352 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L  352 (517)
                      .+++.|+++++.+.+  .+|..+.. +++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|.. +..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence            589999999999987  78887776 99999999995 8898889999999999999999999998677654 4569999


Q ss_pred             cEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcc-cCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY-LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      ++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999999988888899999999999999999878888999988 999999999999888888898887 99999999


Q ss_pred             CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      |.+.+..+..+..+++|+.|++++|++++..+....+++|++|++++|.+++..|..|..+++|+.|++++|++++.+|.
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            99998889999999999999999999987777755689999999999999989999999999999999999999999987


Q ss_pred             cccCC
Q 042271          512 QIGRL  516 (517)
Q Consensus       512 ~~~~~  516 (517)
                      . +++
T Consensus       287 ~-~~l  290 (313)
T 1ogq_A          287 G-GNL  290 (313)
T ss_dssp             S-TTG
T ss_pred             C-ccc
Confidence            6 443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.3e-28  Score=229.31  Aligned_cols=296  Identities=18%  Similarity=0.217  Sum_probs=147.1

Q ss_pred             ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271           56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV  135 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L  135 (517)
                      .++++++++++.+. .+|..+.  +.+++|++++|.+++..+..++++++|++|++++|.+++..|.+|..+++|++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36666777666665 3443332  45666666666666444445666666666666666666555666666666666666


Q ss_pred             cCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecccccc
Q 042271          136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYID  215 (517)
Q Consensus       136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  215 (517)
                      ++|.+.. ++. .+.  ++|++|++++|.                                                   
T Consensus       108 s~n~l~~-l~~-~~~--~~L~~L~l~~n~---------------------------------------------------  132 (330)
T 1xku_A          108 SKNQLKE-LPE-KMP--KTLQELRVHENE---------------------------------------------------  132 (330)
T ss_dssp             CSSCCSB-CCS-SCC--TTCCEEECCSSC---------------------------------------------------
T ss_pred             CCCcCCc-cCh-hhc--ccccEEECCCCc---------------------------------------------------
Confidence            6666542 332 111  345555554443                                                   


Q ss_pred             CCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCC--CcccccccCCcccEEEccCCcccccCC
Q 042271          216 GGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG--SFWMPIHSHQKLATLDVSNNFFRGHIP  293 (517)
Q Consensus       216 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~  293 (517)
                                             +.+ ++...+..+++|+.|++++|.+..  .....+..+++|+.|++++|.++ .+|
T Consensus       133 -----------------------l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~  187 (330)
T 1xku_A          133 -----------------------ITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP  187 (330)
T ss_dssp             -----------------------CCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred             -----------------------ccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCC
Confidence                                   221 122222344455555555544422  22334455556666666666554 344


Q ss_pred             hhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC
Q 042271          294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL  373 (517)
Q Consensus       294 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  373 (517)
                      ...   .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++ .++..+..+
T Consensus       188 ~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          188 QGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             SSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            333   246666666666666555555666666666666666655 233333344555555555555544 222334444


Q ss_pred             CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc--cccccccCCCCccEE
Q 042271          374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKIL  451 (517)
Q Consensus       374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L  451 (517)
                      ++|++|++++|.++......+....                  .....+.++.+++.+|.+..  ..|..|..+++++.+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             CCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEE
Confidence            4444444444444433222222110                  00012445555555555432  334455556666666


Q ss_pred             EccCCc
Q 042271          452 DLSNNS  457 (517)
Q Consensus       452 ~l~~n~  457 (517)
                      ++++|+
T Consensus       325 ~L~~N~  330 (330)
T 1xku_A          325 QLGNYK  330 (330)
T ss_dssp             EC----
T ss_pred             EecccC
Confidence            666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.4e-28  Score=231.95  Aligned_cols=245  Identities=20%  Similarity=0.211  Sum_probs=137.6

Q ss_pred             cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEecc
Q 042271           57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVS  136 (517)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~  136 (517)
                      ++++++++++.+. .+|..+  .++|++|++++|.+.+..+..++.+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6777777777766 444443  2567777777777765555567777777777777777776666677777777777777


Q ss_pred             CCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccC
Q 042271          137 DNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDG  216 (517)
Q Consensus       137 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  216 (517)
                      +|.+.. ++. .+.  ++|++|++++|.+                                                  .
T Consensus       111 ~n~l~~-l~~-~~~--~~L~~L~l~~n~i--------------------------------------------------~  136 (332)
T 2ft3_A          111 KNHLVE-IPP-NLP--SSLVELRIHDNRI--------------------------------------------------R  136 (332)
T ss_dssp             SSCCCS-CCS-SCC--TTCCEEECCSSCC--------------------------------------------------C
T ss_pred             CCcCCc-cCc-ccc--ccCCEEECCCCcc--------------------------------------------------C
Confidence            776642 443 122  5566666665542                                                  1


Q ss_pred             CCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhh
Q 042271          217 GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEI  296 (517)
Q Consensus       217 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  296 (517)
                      ...+..+..+++|+.++++++.+..                       .+..+..+..+ +|+.|++++|.++ .+|..+
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~  191 (332)
T 2ft3_A          137 KVPKGVFSGLRNMNCIEMGGNPLEN-----------------------SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL  191 (332)
T ss_dssp             CCCSGGGSSCSSCCEEECCSCCCBG-----------------------GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS
T ss_pred             ccCHhHhCCCccCCEEECCCCcccc-----------------------CCCCcccccCC-ccCEEECcCCCCC-ccCccc
Confidence            1112223344455555555544431                       01222223333 5556666666554 344433


Q ss_pred             hhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCC
Q 042271          297 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL  376 (517)
Q Consensus       297 ~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  376 (517)
                         .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++ .++..+..+++|
T Consensus       192 ---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          192 ---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             ---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             ---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence               246677777777666555566666666777777766666 333333444555666666555554 222334445555


Q ss_pred             cEEEccCccccc
Q 042271          377 MTLQLDGNKFTG  388 (517)
Q Consensus       377 ~~L~l~~~~~~~  388 (517)
                      +.|++++|.++.
T Consensus       267 ~~L~l~~N~l~~  278 (332)
T 2ft3_A          267 QVVYLHTNNITK  278 (332)
T ss_dssp             CEEECCSSCCCB
T ss_pred             CEEECCCCCCCc
Confidence            555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.2e-28  Score=232.54  Aligned_cols=288  Identities=20%  Similarity=0.220  Sum_probs=233.5

Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +++.+++.++... .+|..+  .++++.|+++++.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5666777666554 344443  368899999999888554444 478899999999999988777778899999999999


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc-ccchhHHhhcCCCcEEEccCCcc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALSNNSL  362 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~n~~  362 (517)
                      ++|.++ .+|...+   ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ......+..+ +|+.|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999987 6776553   799999999999987777778999999999999998863 2334444445 899999999998


Q ss_pred             cccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271          363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF  442 (517)
Q Consensus       363 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  442 (517)
                      ++... .+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++. .+|..+
T Consensus       185 ~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          185 TGIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             SSCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             CccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            86432 22  378999999999998777788999999999999999999777778999999999999999998 677888


Q ss_pred             cCCCCccEEEccCCccccCCCCCCC-------cccccEEEccCCcCC--ccchhhhcCCCcccEEECCCCc
Q 042271          443 CQLNSLKILDLSNNSIFRTLPSCFS-------PASIEQLHLSKNKIE--GRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       443 ~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      ..+++|++|++++|++++..+..+.       ..+|+.|++++|.+.  ...+..|..+++|+.+++++|.
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999999999999887776664       367899999999987  6778899999999999999885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=2.4e-30  Score=264.74  Aligned_cols=207  Identities=15%  Similarity=0.073  Sum_probs=90.8

Q ss_pred             cccccceEeccCCccCCCccc-ccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccC---------CcCCCCCch
Q 042271          250 NNANLERLLLADNSLFGSFWM-PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSR---------NAFNGSIPS  319 (517)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~i~~~~~~  319 (517)
                      .+++|++|++++|.+.+.... .+..+++|++|++++| +.+.....+...+++|++|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            455666666666654322111 1335556666666655 32222222223355666666532         122211111


Q ss_pred             hh-hcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc--C----Cccccc-----ccccccCCCCCcEEEccCcccc
Q 042271          320 SF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS--N----NSLQGH-----IFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       320 ~~-~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      .+ ..+++|++|.+..+.+++.....+...+++|+.|+++  +    +.+++.     ....+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            22 2355566665555555543333333345556666555  2    222211     011133445555555544 333


Q ss_pred             cccchhhhh-cccCCeEEecCCCCCCccchhh-cCCCCCcEEECCCCcccccccc-cccCCCCccEEEccCCcc
Q 042271          388 GEILESLSK-CYLLEGLYLSDNHLTGEIPRWL-GNLSALEDIIMPNNNLEGPIPI-EFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       388 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l  458 (517)
                      +.....+.. +++|+.|++++|.+++..+..+ .++++|+.|++++|.+.+.... .+..+++|++|++++|++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            333333333 4555555555555543322222 3455555555555555322211 222345555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.9e-29  Score=258.02  Aligned_cols=239  Identities=15%  Similarity=0.077  Sum_probs=166.6

Q ss_pred             CccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc-cccCCcccEEEccC---------Cc
Q 042271          218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP-IHSHQKLATLDVSN---------NF  287 (517)
Q Consensus       218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~---------~~  287 (517)
                      .++..+..+++|++|++++|.+.+.....+...+++|++|+++++ +.+..... ...+++|++|++++         +.
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence            445555678899999999988765544555567899999999987 33222222 33578999999843         34


Q ss_pred             ccccCChhhhhccCCCcEEEccCCcCCCCCchhhh-cCCCCcEEecc--c----ccccc----ccchhHHhhcCCCcEEE
Q 042271          288 FRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA-DMKMLERVDIS--Y----NQLTG----EIPERMAARCFSLEILA  356 (517)
Q Consensus       288 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~--~----~~i~~----~~~~~~~~~~~~L~~L~  356 (517)
                      +++.....+...+++|+.|.+..+.+++.....+. .+++|++|+++  +    +.+++    ......+..+++|+.|+
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            44333334444588999998888888755445554 58999999998  3    44441    11123356789999999


Q ss_pred             ccCCcccccccccccC-CCCCcEEEccCcccccccchhh-hhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCc
Q 042271          357 LSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNN  433 (517)
Q Consensus       357 l~~n~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  433 (517)
                      +++ .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|.+++... .....+++|+.|++++|+
T Consensus       439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            987 666554445544 8999999999999876555555 678999999999999864333 345568999999999998


Q ss_pred             ccccccccc-cCCCCccEEEccCCcc
Q 042271          434 LEGPIPIEF-CQLNSLKILDLSNNSI  458 (517)
Q Consensus       434 ~~~~~~~~~-~~~~~L~~L~l~~n~l  458 (517)
                      +.......+ ..+|+|+...+..+..
T Consensus       518 ~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          518 VSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             CBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            854333334 5678888777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.4e-27  Score=220.96  Aligned_cols=281  Identities=21%  Similarity=0.185  Sum_probs=204.4

Q ss_pred             CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc--CChhhhhccCCCcEEE
Q 042271          230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH--IPVEIGTYLPGLMDLN  307 (517)
Q Consensus       230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~  307 (517)
                      +.++.++..+. .+|..+   .+++++|+++++.+.......+..+++|++|++++|.++..  .+..... +++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence            46777777666 455432   36788888888888766655677888888888888877521  2344444 78888888


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      +++|.+. .++..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            8888877 455567788888888888888874333355667888888888888887776677778888888888888876


Q ss_pred             c-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271          388 G-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       388 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      + ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            5 456777788888888888888886667778888888888888888876666677788888888888888877766655


Q ss_pred             C-c-ccccEEEccCCcCCcc--chhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271          467 S-P-ASIEQLHLSKNKIEGR--LESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       467 ~-~-~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      . . ++|++|++++|.++..  ..+...-+...+.+....+.+.+..|..+...
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence            5 3 5888888888887643  11222223345555666777777777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.9e-27  Score=214.67  Aligned_cols=227  Identities=22%  Similarity=0.184  Sum_probs=159.3

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      ++++.+++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .+....+..+++|+.|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            45566666665 555433   356777777777776655566777777777777777766 3433445557777777777


Q ss_pred             CCc-ccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc
Q 042271          359 NNS-LQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP  437 (517)
Q Consensus       359 ~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  437 (517)
                      +|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            775 5555556677777777777777777766666677777777777777777755556677777777777777777755


Q ss_pred             ccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          438 IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       438 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      .+..+..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            555677777888888888777776555554 6778888888888777777777778888888888887776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.6e-27  Score=220.79  Aligned_cols=249  Identities=21%  Similarity=0.221  Sum_probs=158.8

Q ss_pred             ceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEec
Q 042271          255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDI  332 (517)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l  332 (517)
                      +.++++++.++....   ...+++++|++++|.++ .++...+..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCC---CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            455555555543322   11246777777777766 55555444467777777777766522  2455556677777777


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      ++|.+. .++.. +..+++|+.|++++|.+++... ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            777666 44433 3446677777777776665443 45666777777777777766555666666777777777777665


Q ss_pred             C-ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhh
Q 042271          412 G-EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       412 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l  489 (517)
                      + ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            4 3566667777777777777777665566666777777777777776655443333 5677777777777776666666


Q ss_pred             cCCC-cccEEECCCCcCCCCC
Q 042271          490 HDSP-HLVTLDLSCNSLHGSI  509 (517)
Q Consensus       490 ~~~~-~L~~l~l~~n~~~~~~  509 (517)
                      ..++ +|++|++++|++++.+
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSG
T ss_pred             HhhhccCCEEEccCCCeeccc
Confidence            6663 6777777777776554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=227.56  Aligned_cols=279  Identities=18%  Similarity=0.129  Sum_probs=198.6

Q ss_pred             cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271          226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD  305 (517)
Q Consensus       226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  305 (517)
                      |+.....+.+++.+. .+|..+   .+++++|+++++.+.+.....+..+++|++|++++|.+++..+..+.. +++|++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence            333444566666666 455433   357888888888877666556778888888888888877433333433 778888


Q ss_pred             EEccCCcCCCCCchhhhcCCCCcEEeccccccccccch-hHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccC
Q 042271          306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPE-RMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDG  383 (517)
Q Consensus       306 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~  383 (517)
                      |++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|. +.......+..+++|++|++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            888888887655556788888888888888877 5555 556678888888888873 5555556677788888888888


Q ss_pred             cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc---cCCCCccEEEccCCcccc
Q 042271          384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF---CQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       384 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~  460 (517)
                      |.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+   .....++.++++++.+++
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            88877667778888888888888888764333445567888888888888875443322   235677788888777654


Q ss_pred             CC----CC-CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          461 TL----PS-CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       461 ~~----~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ..    +. ...+++|++|++++|.++..++..|..+++|++|++++|++++.+|
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            21    11 1226788899999998887666677888999999999999888775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=226.60  Aligned_cols=230  Identities=23%  Similarity=0.201  Sum_probs=143.7

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ++++.|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            34555555555554 222222223555555666555555444555555666666666666555 4444445555666666


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCc-ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGN-KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL  434 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  434 (517)
                      ++++|.+.......+..+++|++|++++| .+.......+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence            66666665555555566666666666653 333333445666677777777777666 334 356677777777777777


Q ss_pred             cccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271          435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~  509 (517)
                      .+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.++...+..|..+++|+.|+|++|++.+.+
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            766667777777777777777777666666555 677777777777777777777777777888888887776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.1e-26  Score=226.50  Aligned_cols=231  Identities=23%  Similarity=0.214  Sum_probs=159.9

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ++++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            4566666666666533233333 3666666666666666555566666677777777777666 5555555566677777


Q ss_pred             EccCCcccccccccccCCCCCcEEEccC-cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL  434 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  434 (517)
                      ++++|.+.......+..+++|+.|++++ +.+.......+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence            7777776655555666777777777776 33443444456777777777777777763 33 366777888888888888


Q ss_pred             cccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      .+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++.+.+.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            777777788888888888888888777666655 6788888888888887777778888888888888888876653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.2e-26  Score=213.78  Aligned_cols=268  Identities=21%  Similarity=0.191  Sum_probs=189.6

Q ss_pred             CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc
Q 042271          230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS  309 (517)
Q Consensus       230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  309 (517)
                      +.++.++..+. .+|..   ..+++++|+++++.+.+.....+..+++|++|++++|.+++..+..+.. +++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCC
Confidence            45666666665 44442   3467888888888877766666777888888888888877443444444 7888888888


Q ss_pred             CCc-CCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccc
Q 042271          310 RNA-FNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG  388 (517)
Q Consensus       310 ~~~-i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  388 (517)
                      +|. +....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++......+..+++|++|++++|.++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            886 66555777888888888888888877 4545556667888888888888876666667778888888888888876


Q ss_pred             ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCc
Q 042271          389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP  468 (517)
Q Consensus       389 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  468 (517)
                      ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..........
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~  247 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW  247 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence            66666778888888888888887666777888888888888888888666667788888888888888875533322223


Q ss_pred             ccccEEEccCCcCCccchhhhcC--CCcccEEECCCC
Q 042271          469 ASIEQLHLSKNKIEGRLESIIHD--SPHLVTLDLSCN  503 (517)
Q Consensus       469 ~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~l~l~~n  503 (517)
                      ..++.+....+.+....|..+++  +..++..++.+|
T Consensus       248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            44555556666666555655544  234444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=8.3e-26  Score=211.74  Aligned_cols=224  Identities=19%  Similarity=0.212  Sum_probs=168.7

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      +.++.|+++++.++ .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|.. +..+++|+.|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence            45556666666555 55555544 566666666666665 45555666666666666666655 44443 3345666666


Q ss_pred             EccCCccccccccc---------ccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcE
Q 042271          356 ALSNNSLQGHIFSE---------KFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED  426 (517)
Q Consensus       356 ~l~~n~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  426 (517)
                      ++++|...+..+..         +..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence            66665554444433         345899999999999988 66777889999999999999998 46667889999999


Q ss_pred             EECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcC
Q 042271          427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL  505 (517)
Q Consensus       427 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~  505 (517)
                      |++++|.+.+..|..+..+++|++|++++|++.+..+..+. +++|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999888888999999999999999988887776665 89999999999999889999999999999999988776


Q ss_pred             C
Q 042271          506 H  506 (517)
Q Consensus       506 ~  506 (517)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            5

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=7e-26  Score=207.64  Aligned_cols=225  Identities=21%  Similarity=0.252  Sum_probs=185.9

Q ss_pred             EEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCC
Q 042271          281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN  360 (517)
Q Consensus       281 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n  360 (517)
                      ++..+..+. .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            344444444 555543   357888888888888666667888888888888888887 566566677888999999988


Q ss_pred             cccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCc-cchhhcCCCCCcEEECCCCccccccc
Q 042271          361 SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE-IPRWLGNLSALEDIIMPNNNLEGPIP  439 (517)
Q Consensus       361 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~  439 (517)
                      .+++.....+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            88877777788889999999999988766666688889999999999998753 58889999999999999999987766


Q ss_pred             ccccCCCCcc----EEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          440 IEFCQLNSLK----ILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       440 ~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ..+..+++|+    +|++++|++++..+..+...+|++|++++|.+++.++..|..+++|++|++++|++++.+|
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            7777777777    8999999998888888877899999999999998888889999999999999999999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.5e-25  Score=213.17  Aligned_cols=281  Identities=18%  Similarity=0.168  Sum_probs=182.9

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR  107 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  107 (517)
                      ...|+.....+++++.+..+|. .+  .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..++.+++|+
T Consensus        27 ~~~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            3456666678888888888876 33  25889999999988866666888899999999998888876677788889999


Q ss_pred             EEEccccccCCcccccccCCCCCcEEeccCCccccccCC-CcccCCCCCceeecccCCCCCCCCCcccccCccccccccc
Q 042271          108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISS-SPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS  186 (517)
Q Consensus       108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l  186 (517)
                      +|++++|.+++..+..+.++++|++|++++|++.. ++. ..+..+++|++|++++|... .....              
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~-~~~~~--------------  167 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTF-TKIQR--------------  167 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSC-CEECT--------------
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccc-cccCH--------------
Confidence            99999998886655668888999999999988864 444 46788889999999887411 11000              


Q ss_pred             ccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCC
Q 042271          187 EICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG  266 (517)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (517)
                                ..+....+|+++++++|.+....|..+..+++|+.++++++.+. .++..++..+++|+.|++++|.+.+
T Consensus       168 ----------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          168 ----------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ----------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             ----------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence                      11223346777777777666666777777778888888887775 4555555567778888887777655


Q ss_pred             Cccccc---ccCCcccEEEccCCcccc----cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc
Q 042271          267 SFWMPI---HSHQKLATLDVSNNFFRG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG  339 (517)
Q Consensus       267 ~~~~~~---~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~  339 (517)
                      .....+   .....++.++++.+.+.+    .+|..+.. +++|++|++++|.++......+..+++|++|++++|.+.+
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccccccchhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            432222   123445555555554432    12222222 4455555555555542222223455555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.8e-26  Score=215.21  Aligned_cols=249  Identities=20%  Similarity=0.221  Sum_probs=197.4

Q ss_pred             hcccccceEeccCCccCCCcccccccCCcccEEEccCCccc-ccCChhhh------hccCCCcEEEccCCcCCCCCchhh
Q 042271          249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR-GHIPVEIG------TYLPGLMDLNLSRNAFNGSIPSSF  321 (517)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~~  321 (517)
                      ...++|++++++++.+  ..+..+..  .|+.|+++++.+. ..++....      ..+++|++|++++|.+++..+..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4556788888888877  33333332  2788888888773 34555443      137899999999999998777766


Q ss_pred             --hcCCCCcEEeccccccccccchhHHhhc-----CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc--cch
Q 042271          322 --ADMKMLERVDISYNQLTGEIPERMAARC-----FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE--ILE  392 (517)
Q Consensus       322 --~~l~~L~~L~l~~~~i~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~  392 (517)
                        ..+++|++|++++|.+.+. |.. +..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence              8899999999999999855 543 3444     8999999999999988878899999999999999997543  223


Q ss_pred             hh--hhcccCCeEEecCCCCCC---ccchhhcCCCCCcEEECCCCccccccc-ccccCCCCccEEEccCCccccCCCCCC
Q 042271          393 SL--SKCYLLEGLYLSDNHLTG---EIPRWLGNLSALEDIIMPNNNLEGPIP-IEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       393 ~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      .+  ..+++|++|++++|.+.+   .....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++. .+..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhc
Confidence            33  788999999999999983   222445688999999999999987664 456678999999999999974 44444


Q ss_pred             CcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC
Q 042271          467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG  507 (517)
Q Consensus       467 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~  507 (517)
                      . ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus       273 ~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            3 8999999999999977 44 8999999999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.1e-25  Score=210.97  Aligned_cols=212  Identities=25%  Similarity=0.339  Sum_probs=190.9

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .++..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            578999999999998 67778888999999999999998 777654 56999999999999998 556789999999999


Q ss_pred             EccCcccccccchhhh---------hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccE
Q 042271          380 QLDGNKFTGEILESLS---------KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI  450 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  450 (517)
                      ++++|.+....+..+.         ++++|++|++++|.+. .+|..+..+++|++|++++|.+.+ ++..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            9999887666666554         4899999999999998 788889999999999999999995 6667999999999


Q ss_pred             EEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCCC
Q 042271          451 LDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP  517 (517)
Q Consensus       451 L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~  517 (517)
                      |++++|++.+..+..+. +++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++++|+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence            99999999888887666 89999999999999989999999999999999999999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=7.1e-25  Score=214.82  Aligned_cols=247  Identities=23%  Similarity=0.214  Sum_probs=186.6

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      ..+.++..+..+. .+|..+   .++++.|++++|.+.......+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            3456666666666 455433   367888888888887776677788888888888888887 44444444478888888


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccCccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDGNKF  386 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~  386 (517)
                      +++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|. +.......+..+++|++|++++|.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            8888888666667888888888888888877 6666667778888888888843 4444445677888888888888888


Q ss_pred             ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271          387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                      ... + .+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++|+++...+..+
T Consensus       198 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          198 REI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             SSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            743 2 46777888888888888887667788888888888888888887777788888888888888888877666665


Q ss_pred             C-cccccEEEccCCcCC
Q 042271          467 S-PASIEQLHLSKNKIE  482 (517)
Q Consensus       467 ~-~~~L~~L~l~~n~~~  482 (517)
                      . +++|+.|++++|.+.
T Consensus       276 ~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SSCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEcCCCCcc
Confidence            5 688888888888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.1e-24  Score=214.29  Aligned_cols=246  Identities=23%  Similarity=0.173  Sum_probs=167.3

Q ss_pred             cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEc
Q 042271          229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL  308 (517)
Q Consensus       229 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  308 (517)
                      ...++..+..+. .+|..+   .++++.|++++|.+.......+..+++|+.|++++|.+++..+..+ ..+++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhc-cCcccCCEEEC
Confidence            445565555555 344422   3567777777777766666667777777777777777763333333 33777777777


Q ss_pred             cCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCC-cccccccccccCCCCCcEEEccCcccc
Q 042271          309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-SLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       309 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                      ++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++| .+.......+..+++|++|++++|.+.
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            777777666666777777777777777776 566666666777777777774 333334445667777777777777776


Q ss_pred             cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271          388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS  467 (517)
Q Consensus       388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  467 (517)
                      +.  ..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++|+++...+..+.
T Consensus       210 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             SC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             cc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            43  2366677777777777777766677777777777777777777766667777777777777777777666655554


Q ss_pred             -cccccEEEccCCcCC
Q 042271          468 -PASIEQLHLSKNKIE  482 (517)
Q Consensus       468 -~~~L~~L~l~~n~~~  482 (517)
                       +++|++|++++|.+.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence             677777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.3e-26  Score=212.50  Aligned_cols=268  Identities=18%  Similarity=0.149  Sum_probs=211.1

Q ss_pred             cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEc
Q 042271          229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL  308 (517)
Q Consensus       229 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  308 (517)
                      ++..++..+.+. ..+..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+   ...+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            444455555554 3334445667899999999999988877788999999999999999874443   334889999999


Q ss_pred             cCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccc
Q 042271          309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG  388 (517)
Q Consensus       309 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  388 (517)
                      ++|.+++.     ...++|++|++++|.+.+. +..   .+++|+.|++++|.+++.....+..+++|++|++++|.+.+
T Consensus        88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQEL-----LVGPSIETLHAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEEEE-----EECTTCCEEECCSSCCSEE-EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCccccc-----cCCCCcCEEECCCCccCCc-Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            99988732     3458999999999998843 332   36789999999999988777788889999999999999987


Q ss_pred             ccchhh-hhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271          389 EILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS  467 (517)
Q Consensus       389 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  467 (517)
                      ..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.+.+ ++..+..+++|++|++++|+++........
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence            666666 4689999999999999843 32 3458999999999999985 445588899999999999999765444444


Q ss_pred             cccccEEEccCCcCC-ccchhhhcCCCcccEEECCCC-cCCCCCCcc
Q 042271          468 PASIEQLHLSKNKIE-GRLESIIHDSPHLVTLDLSCN-SLHGSIPNQ  512 (517)
Q Consensus       468 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~l~l~~n-~~~~~~~~~  512 (517)
                      +++|++|++++|.+. +..+..+..++.|+.++++++ .+++..|..
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            899999999999998 778889999999999999844 444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.9e-26  Score=213.44  Aligned_cols=259  Identities=20%  Similarity=0.169  Sum_probs=151.0

Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +++..++..+.+.......+..+++|+.|+++++.+.+..+.. +..+++|++|++++|.+.+...  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHH-HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHH-hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3444444444333333334445556777777777666443333 3566677777777776654332  666667777777


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ  363 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  363 (517)
                      ++|.++ .++     ..++|++|++++|.+++..+.   .+++|++|++++|.+. .++...+..+++|+.|++++|.++
T Consensus        88 s~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           88 NNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence            777665 222     135677777777766643322   2456777777777666 344444455667777777777666


Q ss_pred             ccccccc-cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271          364 GHIFSEK-FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF  442 (517)
Q Consensus       364 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  442 (517)
                      +..+..+ ..+++|++|++++|.++...  ....+++|++|++++|.+. .++..+..+++|+.|++++|.+. .+|..+
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHh
Confidence            5544444 25667777777777665431  2223666777777777766 34444666677777777777666 345566


Q ss_pred             cCCCCccEEEccCCccc-cCCCCCCC-cccccEEEccCC
Q 042271          443 CQLNSLKILDLSNNSIF-RTLPSCFS-PASIEQLHLSKN  479 (517)
Q Consensus       443 ~~~~~L~~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~n  479 (517)
                      ..+++|+.|++++|+++ +..+..+. ++.|+.|++.++
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            66677777777777665 22222222 556666666533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.4e-24  Score=215.75  Aligned_cols=266  Identities=23%  Similarity=0.247  Sum_probs=215.3

Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                      +++.++++++.+. .+|..+.  ++|+.|++++|.+. .+|.    .+++|++|++++|.+.....    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            5788888888776 5565554  78999999999988 4554    46899999999999875432    6789999999


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ  363 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  363 (517)
                      ++|.++ .++.    .+++|+.|++++|.++. ++.   .+++|++|++++|.+. .++.    .+++|+.|++++|.++
T Consensus       109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence            999997 5555    37899999999999885 443   3589999999999988 4543    3578999999999988


Q ss_pred             ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271          364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  443 (517)
                      ...    ..+++|+.|++++|.+... +.   ..++|+.|++++|.+. .+|.   .+++|+.|++++|.+.+ +|   .
T Consensus       175 ~l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          175 SLP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             CCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred             CCc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---C
Confidence            643    4579999999999999853 32   2478999999999998 4443   35899999999999985 44   4


Q ss_pred             CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271          444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR  515 (517)
Q Consensus       444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~  515 (517)
                      .+++|+.|++++|+++....   .+++|++|++++|.++ .+|..|.++++|+.|++++|++++.+|..+.+
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            56899999999999975443   5799999999999999 45677999999999999999999888776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.5e-25  Score=207.48  Aligned_cols=252  Identities=20%  Similarity=0.150  Sum_probs=190.0

Q ss_pred             cccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC-cccccc-------cCCcccEEEccCCcccccCC
Q 042271          222 FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS-FWMPIH-------SHQKLATLDVSNNFFRGHIP  293 (517)
Q Consensus       222 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~~~~L~~L~l~~~~~~~~~~  293 (517)
                      ..+..++|+.++++++.+  .+|..+...   ++.|+++++.+... .+..+.       .+++|++|++++|.+++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345566788888888888  666655332   78888888777432 222222       57888999999988887777


Q ss_pred             hhhh-hccCCCcEEEccCCcCCCCCchhhhcC-----CCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccc--
Q 042271          294 VEIG-TYLPGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH--  365 (517)
Q Consensus       294 ~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~--  365 (517)
                      ..++ ..+++|++|++++|.+++. +..+..+     ++|++|++++|.+. .++...+..+++|++|++++|.+.+.  
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchH
Confidence            7652 4488899999999988866 6777776     88999999999887 55555566788999999999886643  


Q ss_pred             cccc--ccCCCCCcEEEccCccccc---ccchhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCccccccc
Q 042271          366 IFSE--KFNLTNLMTLQLDGNKFTG---EILESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIP  439 (517)
Q Consensus       366 ~~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~  439 (517)
                      .+..  +..+++|++|++++|.+..   .....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. .+|
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence            1222  3688999999999999873   222344577899999999999987553 45667899999999999998 566


Q ss_pred             ccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271          440 IEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       440 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      ..+.  ++|++|++++|++++. +....+++|++|++++|.+++.
T Consensus       270 ~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          270 KGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred             hhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence            6665  8999999999999776 5555589999999999998753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.3e-24  Score=192.56  Aligned_cols=205  Identities=25%  Similarity=0.300  Sum_probs=118.4

Q ss_pred             cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271          277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA  356 (517)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  356 (517)
                      ..+.++++++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            4667777777776 566544   346777777777777555556777777777777777666 55555555556666666


Q ss_pred             ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271          357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG  436 (517)
Q Consensus       357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  436 (517)
                      +++|.+.......+..+++|++|++++|.+                        ....+..+..+++|++|++++|.+.+
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQL------------------------KSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCcc------------------------CeeCHHHhCcCcCCCEEECCCCcCCc
Confidence            666655544444444455555555555544                        43334444445555555555555544


Q ss_pred             cccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       437 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ..+..|..+++|++|++++|+++...+..+. +++|++|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus       148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            3333455555555555555555544444333 4556666666666555555556666666666666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.2e-25  Score=218.20  Aligned_cols=246  Identities=19%  Similarity=0.166  Sum_probs=197.5

Q ss_pred             ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEE
Q 042271          251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV  330 (517)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L  330 (517)
                      +++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+  + ..+++|++|++++|.+++.     ...++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-----LVGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C-TTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c-ccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence            4589999999999988777788899999999999999875444  3 3488999999999988743     234889999


Q ss_pred             eccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh-hcccCCeEEecCCC
Q 042271          331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS-KCYLLEGLYLSDNH  409 (517)
Q Consensus       331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~  409 (517)
                      ++++|.+.+..+.    .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus       105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999998844332    367899999999999887777888899999999999999877777765 78899999999999


Q ss_pred             CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCC-ccchhh
Q 042271          410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIE-GRLESI  488 (517)
Q Consensus       410 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~  488 (517)
                      +.+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|++++.......+++|+.|++++|.+. +.++..
T Consensus       181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            8854 32 3458899999999999986 444588889999999999999775554444789999999999987 667788


Q ss_pred             hcCCCcccEEECC-------CCcCCCCCCc
Q 042271          489 IHDSPHLVTLDLS-------CNSLHGSIPN  511 (517)
Q Consensus       489 l~~~~~L~~l~l~-------~n~~~~~~~~  511 (517)
                      +..++.|+.++++       .++..+..|.
T Consensus       258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             HHhCCCCcEEeccccccccCCCcccccCCc
Confidence            8888999988886       6666655553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.5e-24  Score=197.94  Aligned_cols=205  Identities=21%  Similarity=0.195  Sum_probs=102.3

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+.+ ++  .+..+++|++|++++|.+++.....+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            33444444444444311  224444444444444444442 21  22334455555555554444444444455555555


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            55555554444444455555555555555555444444455555555555555555444444555555555555555555


Q ss_pred             cCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271          460 RTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       460 ~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      +..+..+. +++|++|++++|.+.+       .+++|+.+++..|.++|.+|.+++++
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            54444333 4555555555555442       24455566666666666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.7e-24  Score=212.47  Aligned_cols=216  Identities=24%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ++|+.|++++|.+++..+..+. .+++|++|++++|.+++..+  +..+++|++|++++|.+. .++.     .++|+.|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence            3455555555555422222222 24555555555555443322  444555555555555444 2221     2445555


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhc-CCCCCcEEECCCCcc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG-NLSALEDIIMPNNNL  434 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  434 (517)
                      ++++|.+++....   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            5555554433221   234455555555555444444444455555555555555443444433 445555555555555


Q ss_pred             cccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      .+..+  ...+++|+.|++++|++++..+....+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            43211  123445555555555554443333334555555555555543 2333444455555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.3e-22  Score=204.34  Aligned_cols=93  Identities=27%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271           56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV  135 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L  135 (517)
                      .++++|+++++.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            35666666666666 4444433  56666666666666 3443   3456666666666665 3343   4566666666


Q ss_pred             cCCccccccCCCcccCCCCCceeecccCC
Q 042271          136 SDNQLTQNISSSPLMHLTSIEELILSNNH  164 (517)
Q Consensus       136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (517)
                      ++|.+.+ ++.    .+++|++|++++|.
T Consensus       109 s~N~l~~-l~~----~l~~L~~L~L~~N~  132 (622)
T 3g06_A          109 FSNPLTH-LPA----LPSGLCKLWIFGNQ  132 (622)
T ss_dssp             CSCCCCC-CCC----CCTTCCEEECCSSC
T ss_pred             cCCcCCC-CCC----CCCCcCEEECCCCC
Confidence            6666543 322    34556666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-22  Score=184.38  Aligned_cols=206  Identities=24%  Similarity=0.202  Sum_probs=176.4

Q ss_pred             cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271          252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  331 (517)
                      ...+.++++++.++... ..+  .+.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            45788999998887543 222  368999999999998 55554444589999999999999977677789999999999


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|.+. .++...+..+++|+.|++++|.++......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            9999998 677777788999999999999999888778889999999999999998776677889999999999999999


Q ss_pred             CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271          412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  462 (517)
                      ...+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++....
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            777777899999999999999998766667888999999999999885543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.3e-22  Score=183.64  Aligned_cols=203  Identities=22%  Similarity=0.218  Sum_probs=137.0

Q ss_pred             cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      +..++++++++++++.++ .+|..+   .+.++.|++++|.+++..+..+..+++|++|++++|.+. .++..  ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence            456678888888888876 666554   357888888888887666677788888888888888777 33332  45677


Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      |+.|++++|.+.. ++..+..+++|++|++++|.++...+..+..+++|++|++++|++....+..|..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            7777777777663 334555667777777777777655556666667777777777776655555566666777777777


Q ss_pred             CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCC
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIE  482 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~  482 (517)
                      |++....+..|..+++|++|++++|+++......+...+|+.|++++|.+.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            766654444556666677777776666655555555566666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.1e-22  Score=185.47  Aligned_cols=204  Identities=21%  Similarity=0.246  Sum_probs=178.2

Q ss_pred             CCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEE
Q 042271          301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQ  380 (517)
Q Consensus       301 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  380 (517)
                      ..+..+++.++.+.+.  .....+++|+.|++++|.+. .++.  +..+++|+.|++++|.+++.  ..+..+++|++|+
T Consensus        19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            3566667777776543  45678899999999999987 4443  45699999999999998863  4788999999999


Q ss_pred             ccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271          381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       381 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            99999997777778999999999999999997777789999999999999999997777778999999999999999988


Q ss_pred             CCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          461 TLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       461 ~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      ..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++++.+|.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            7777655 89999999999999999999999999999999999999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.7e-23  Score=199.32  Aligned_cols=252  Identities=17%  Similarity=0.138  Sum_probs=163.8

Q ss_pred             eeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc----cccccCC-cccEEEccCCcccccCChhhhhc----cCC
Q 042271          232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW----MPIHSHQ-KLATLDVSNNFFRGHIPVEIGTY----LPG  302 (517)
Q Consensus       232 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~  302 (517)
                      ..++.+.+++.+|... ...++|++|++++|.+.+...    ..+..++ +|++|++++|.+++..+..+...    +++
T Consensus         3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4567777776666543 455568888888888776655    5566677 78888888888875545444431    278


Q ss_pred             CcEEEccCCcCCCCCchhhh----cC-CCCcEEeccccccccccchhHHh---h-cCCCcEEEccCCcccccccc----c
Q 042271          303 LMDLNLSRNAFNGSIPSSFA----DM-KMLERVDISYNQLTGEIPERMAA---R-CFSLEILALSNNSLQGHIFS----E  369 (517)
Q Consensus       303 L~~L~l~~~~i~~~~~~~~~----~l-~~L~~L~l~~~~i~~~~~~~~~~---~-~~~L~~L~l~~n~~~~~~~~----~  369 (517)
                      |++|++++|.+++..+..+.    .+ ++|++|++++|.+.+..+..+..   . +++|++|++++|.+++....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            88888888888766555443    33 78888888888877444433322   2 35788888888877753332    2


Q ss_pred             ccCCC-CCcEEEccCcccccccchhhh----hc-ccCCeEEecCCCCCCc----cchhhcC-CCCCcEEECCCCcccccc
Q 042271          370 KFNLT-NLMTLQLDGNKFTGEILESLS----KC-YLLEGLYLSDNHLTGE----IPRWLGN-LSALEDIIMPNNNLEGPI  438 (517)
Q Consensus       370 ~~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~  438 (517)
                      +..++ +|++|++++|.+++..+..+.    .+ ++|++|++++|.+.+.    ++..+.. .++|++|++++|.+.+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            33444 788888888887765554433    33 4788888888877642    3444544 357888888888776533


Q ss_pred             c----ccccCCCCccEEEccCCccccCCC--------CCCCcccccEEEccCCcCCcc
Q 042271          439 P----IEFCQLNSLKILDLSNNSIFRTLP--------SCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       439 ~----~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      +    ..+..+++|++|++++|.+.+...        ....+++|++|++++|.+...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3    334566778888888777433222        112256777777777777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=3.2e-23  Score=195.92  Aligned_cols=199  Identities=17%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcc--cccceEeccCCccCCCcccccccCCcccEEEccCCccccc-CChhhhhccCCCc
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENN--ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH-IPVEIGTYLPGLM  304 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~  304 (517)
                      .++.++++++.+.   +. .+..+  ++++.++++++.+.+.... +..+++|++|++++|.+.+. ++..+ ..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred             hheeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence            3566666666554   12 22333  5666666666665544332 33456666666666655432 22222 2256666


Q ss_pred             EEEccCCcCCCCCchhhhcCCCCcEEecccc-ccccccchhHHhhcCCCcEEEccCC-ccccc-ccccccCCC-CCcEEE
Q 042271          305 DLNLSRNAFNGSIPSSFADMKMLERVDISYN-QLTGEIPERMAARCFSLEILALSNN-SLQGH-IFSEKFNLT-NLMTLQ  380 (517)
Q Consensus       305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~  380 (517)
                      +|++++|.+++..+..+..+++|++|++++| .+.+......+..+++|++|++++| .+++. ....+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            6666666555444555555666666666666 3443222333444555555555555 54432 223344455 555555


Q ss_pred             ccCcc--cc-cccchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEECCCC
Q 042271          381 LDGNK--FT-GEILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDIIMPNN  432 (517)
Q Consensus       381 l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~  432 (517)
                      +++|.  ++ ...+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55552  22 1223334445555555555554 33333344444444555554444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.5e-22  Score=180.94  Aligned_cols=202  Identities=23%  Similarity=0.215  Sum_probs=134.3

Q ss_pred             hcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271          249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE  328 (517)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~  328 (517)
                      ..++++++++++++.++..... +  .+.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+  ...+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             cccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            3556677777777766543321 2  25677777777777633333333 36777777777777764322  25677777


Q ss_pred             EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC
Q 042271          329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN  408 (517)
Q Consensus       329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  408 (517)
                      +|++++|.+. .+|.. +..+++|+.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            7777777776 55542 345677777777777777666666777777777777777777655566667777777777777


Q ss_pred             CCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       409 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      ++....+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            777555556677777777777777777 45556666677777777777763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=187.60  Aligned_cols=227  Identities=17%  Similarity=0.171  Sum_probs=177.4

Q ss_pred             CcccEEEccCCcccccCChhh--hhccCCCcEEEccCCcCCCCCchhh--hcCCCCcEEeccccccccccc---hhHHhh
Q 042271          276 QKLATLDVSNNFFRGHIPVEI--GTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERVDISYNQLTGEIP---ERMAAR  348 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~---~~~~~~  348 (517)
                      ..++.+.+.++.+++.....+  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+   ...+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356777777766542211111  1125679999999999988888777  889999999999999885443   223346


Q ss_pred             cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc--c--chhhhhcccCCeEEecCCCCCCccch----hhcC
Q 042271          349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE--I--LESLSKCYLLEGLYLSDNHLTGEIPR----WLGN  420 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~  420 (517)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  ...+..+++|++|++++|.++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            88999999999999888878888999999999999987532  1  223467889999999999997 3333    3577


Q ss_pred             CCCCcEEECCCCcccccccccccCC---CCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccE
Q 042271          421 LSALEDIIMPNNNLEGPIPIEFCQL---NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVT  497 (517)
Q Consensus       421 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  497 (517)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|+++.. +..+ .++|++|++++|.+++...  +..+++|+.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~-~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~  298 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL-PAKLRVLDLSSNRLNRAPQ--PDELPEVDN  298 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-CSCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-cCCCCEEECCCCcCCCCch--hhhCCCccE
Confidence            8999999999999998767776666   7999999999999754 4444 4899999999999997632  788899999


Q ss_pred             EECCCCcCCC
Q 042271          498 LDLSCNSLHG  507 (517)
Q Consensus       498 l~l~~n~~~~  507 (517)
                      |++++|+|++
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1e-21  Score=179.80  Aligned_cols=203  Identities=23%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271          253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI  332 (517)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  332 (517)
                      ++++|+++++.+.+.....+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4555555555554443334444555555555555544 222222222445555555555554444444455555555555


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCccccc-ccccccCCCCCcEEEccCcccccccchhhhhcccCC----eEEecC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGH-IFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE----GLYLSD  407 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~  407 (517)
                      ++|.+. .++...+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+    .|++++
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            555444 22222233344455555555444432 233444444555555555444433333444444444    444444


Q ss_pred             CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271          408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  458 (517)
                      |.+.+..+..+ ...+|+.|++++|.+.+..+..|..+++|++|++++|++
T Consensus       187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            44442222222 222444444444444433333334444444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.9e-22  Score=192.11  Aligned_cols=254  Identities=19%  Similarity=0.170  Sum_probs=190.4

Q ss_pred             eeccccccCCCccccccccCCcCEeeccCCcCCCCCChh---hhhccc-ccceEeccCCccCCCcccccccC-----Ccc
Q 042271          208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW---LVENNA-NLERLLLADNSLFGSFWMPIHSH-----QKL  278 (517)
Q Consensus       208 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  278 (517)
                      ..++.+.+.+..|..+...++|+.|++++|.+.+..+..   .+..++ +|++|++++|.+.+..+..+...     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            466777777777888777788999999999988665522   234566 89999999999887766656554     899


Q ss_pred             cEEEccCCcccccCChhhhhc---c-CCCcEEEccCCcCCCCCchhhhc-----CCCCcEEeccccccccccchhH---H
Q 042271          279 ATLDVSNNFFRGHIPVEIGTY---L-PGLMDLNLSRNAFNGSIPSSFAD-----MKMLERVDISYNQLTGEIPERM---A  346 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~i~~~~~~~~~~-----l~~L~~L~l~~~~i~~~~~~~~---~  346 (517)
                      ++|++++|.+++..+..+...   + ++|++|++++|.+++..+..+..     +++|++|++++|.+.+.....+   +
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            999999999986555544332   3 79999999999998766655443     4699999999999885444332   2


Q ss_pred             hhcC-CCcEEEccCCccccccccc----ccCC-CCCcEEEccCccccccc----chhhhh-cccCCeEEecCCCCCCccc
Q 042271          347 ARCF-SLEILALSNNSLQGHIFSE----KFNL-TNLMTLQLDGNKFTGEI----LESLSK-CYLLEGLYLSDNHLTGEIP  415 (517)
Q Consensus       347 ~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~  415 (517)
                      ..++ +|+.|++++|.+++.....    +..+ ++|++|++++|.+.+..    +..+.. .++|++|++++|.+.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3344 8999999999998665543    3345 59999999999998633    334444 4589999999999986443


Q ss_pred             ----hhhcCCCCCcEEECCCCccccc-------ccccccCCCCccEEEccCCccccC
Q 042271          416 ----RWLGNLSALEDIIMPNNNLEGP-------IPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       416 ----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                          ..+..+++|+.|++++|.+.+.       ++..+..+++|+.|++++|++.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                4457789999999999985432       334567888999999999998665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.7e-22  Score=189.61  Aligned_cols=255  Identities=17%  Similarity=0.181  Sum_probs=193.6

Q ss_pred             cccceEeccCCccCCCcccccccC--CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCC-CchhhhcCCCCc
Q 042271          252 ANLERLLLADNSLFGSFWMPIHSH--QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLE  328 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~  328 (517)
                      ..++.++++++.+..   ..+..+  +.++.++++++.+.+..+. .+. +++|++|++++|.+++. ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            347889998887652   334445  7899999999988755443 444 78999999999988754 667788999999


Q ss_pred             EEeccccccccccchhHHhhcCCCcEEEccCC-ccccc-ccccccCCCCCcEEEccCc-ccccc-cchhhhhcc-cCCeE
Q 042271          329 RVDISYNQLTGEIPERMAARCFSLEILALSNN-SLQGH-IFSEKFNLTNLMTLQLDGN-KFTGE-ILESLSKCY-LLEGL  403 (517)
Q Consensus       329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L  403 (517)
                      +|++++|.+.+..+.. +..+++|++|++++| .+++. ....+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus       122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            9999999887555544 445899999999999 56653 4445778999999999999 88753 456678889 99999


Q ss_pred             EecCC--CCC-CccchhhcCCCCCcEEECCCCc-ccccccccccCCCCccEEEccCCc-cccCCCCCC-CcccccEEEcc
Q 042271          404 YLSDN--HLT-GEIPRWLGNLSALEDIIMPNNN-LEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCF-SPASIEQLHLS  477 (517)
Q Consensus       404 ~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~L~~L~l~  477 (517)
                      ++++|  .+. ..++..+..+++|+.|++++|. +.+..+..+..+++|++|++++|. ++......+ .+++|++|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            99999  454 3566777889999999999998 666667788889999999999995 333222123 37899999999


Q ss_pred             CCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271          478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR  515 (517)
Q Consensus       478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~  515 (517)
                      +| ++......+.  .+++.|++++|.+++..|..+++
T Consensus       281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             Cc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            99 5543333332  24666678999999999988774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.4e-22  Score=178.08  Aligned_cols=203  Identities=17%  Similarity=0.156  Sum_probs=153.4

Q ss_pred             cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcEEEccC-Ccccccccc
Q 042271          291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEILALSN-NSLQGHIFS  368 (517)
Q Consensus       291 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~  368 (517)
                      .+|. +   .+++++|++++|.+++..+..+..+++|++|++++|. +. .++...+..+++|+.|++++ |.++.....
T Consensus        25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            5565 2   4578888888888886666678888888888888886 65 66666677788888888887 888776667


Q ss_pred             cccCCCCCcEEEccCcccccccchhhhhcccCC---eEEecCC-CCCCccchhhcCCCCCc-EEECCCCccccccccccc
Q 042271          369 EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE---GLYLSDN-HLTGEIPRWLGNLSALE-DIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       369 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~  443 (517)
                      .|..+++|++|++++|.+.. .+. +..+++|+   .|++++| .+....+..|.++++|+ .|++++|.+....+..|.
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            77888888888888888875 343 77777887   8888888 77755556688888888 888888888744344454


Q ss_pred             CCCCccEEEccCCc-cccCCCCCCC-c-ccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271          444 QLNSLKILDLSNNS-IFRTLPSCFS-P-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       444 ~~~~L~~L~l~~n~-l~~~~~~~~~-~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      . ++|++|++++|+ ++...+..+. + ++|++|++++|.+++.++.   .+++|+.|+++++.
T Consensus       178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            4 788888888884 7766666655 5 7888888888888866554   45688888887764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.4e-21  Score=174.55  Aligned_cols=158  Identities=23%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             CCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECC
Q 042271          351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP  430 (517)
Q Consensus       351 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  430 (517)
                      .++.|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44444444444444444444445555555555555544444444555555555555555554444445555555555555


Q ss_pred             CCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271          431 NNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       431 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      +|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5555544444445555555555555555544443332 45555555555555555555555555555555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.3e-22  Score=195.41  Aligned_cols=240  Identities=19%  Similarity=0.257  Sum_probs=119.9

Q ss_pred             hcccccceEeccCCccCCCcc----cccccCCcccEEEccCCcc---cccCChhhh------hccCCCcEEEccCCcCCC
Q 042271          249 ENNANLERLLLADNSLFGSFW----MPIHSHQKLATLDVSNNFF---RGHIPVEIG------TYLPGLMDLNLSRNAFNG  315 (517)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~---~~~~~~~~~------~~~~~L~~L~l~~~~i~~  315 (517)
                      ..+++|++|++++|.+.....    ..+..+++|++|++++|.+   .+.+|..+.      ..+++|++|++++|.+++
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            345566666666665544322    2244556666666665432   223333221      124555555555555543


Q ss_pred             ----CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC---------CCCcEEEcc
Q 042271          316 ----SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL---------TNLMTLQLD  382 (517)
Q Consensus       316 ----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------~~L~~L~l~  382 (517)
                          .++..+..+++|++|++++|.+.+..+..+..                     .+..+         ++|++|+++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------------ALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------------HHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------------HHHHHhhhhhcccCCCCcEEECC
Confidence                13334445555555555555544222111111                     11111         555555555


Q ss_pred             Ccccccc-cc---hhhhhcccCCeEEecCCCCCC-----ccchhhcCCCCCcEEECCCCccc----ccccccccCCCCcc
Q 042271          383 GNKFTGE-IL---ESLSKCYLLEGLYLSDNHLTG-----EIPRWLGNLSALEDIIMPNNNLE----GPIPIEFCQLNSLK  449 (517)
Q Consensus       383 ~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~  449 (517)
                      +|.+++. .+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+.    ..++..+..+++|+
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            5555421 11   234455566666666665542     12224555566666666666653    33455556666666


Q ss_pred             EEEccCCccccCC----CCC---CCcccccEEEccCCcCCc----cchhhh-cCCCcccEEECCCCcCCCCC
Q 042271          450 ILDLSNNSIFRTL----PSC---FSPASIEQLHLSKNKIEG----RLESII-HDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       450 ~L~l~~n~l~~~~----~~~---~~~~~L~~L~l~~n~~~~----~~~~~l-~~~~~L~~l~l~~n~~~~~~  509 (517)
                      +|+|++|++++..    +..   ..+++|++|++++|.+++    .++..+ .++++|++|++++|++++..
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            6666666654431    111   114666666666666665    244444 55677777777777776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3.2e-21  Score=178.95  Aligned_cols=196  Identities=23%  Similarity=0.304  Sum_probs=135.9

Q ss_pred             cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      ...+++|++|+++++.+. .++ .+. .+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++  .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence            445677888888888776 444 333 37788888888888774433  777888888888888776 343  2455778


Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      |+.|++++|.+++..  .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus       109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD  182 (308)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence            888888888776532  36677788888888887764332  6777778888888887774332  67777778888877


Q ss_pred             CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR  484 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  484 (517)
                      |.+.+..+  +..+++|++|++++|++++..+ ...+++|++|++++|.++..
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred             CccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence            77765433  6677777777777777765543 33467777777777777643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.1e-21  Score=175.47  Aligned_cols=190  Identities=17%  Similarity=0.156  Sum_probs=166.9

Q ss_pred             CCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccC-cccccccchhhhhcccCC
Q 042271          324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLE  401 (517)
Q Consensus       324 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~  401 (517)
                      .+++++|++++|.+. .++...+..+++|+.|++++|. ++......|..+++|++|++++ |.+....+..+..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            348999999999998 7777777889999999999997 8877777899999999999998 999877777889999999


Q ss_pred             eEEecCCCCCCccchhhcCCCCCc---EEECCCC-cccccccccccCCCCcc-EEEccCCccccCCCCCCCcccccEEEc
Q 042271          402 GLYLSDNHLTGEIPRWLGNLSALE---DIIMPNN-NLEGPIPIEFCQLNSLK-ILDLSNNSIFRTLPSCFSPASIEQLHL  476 (517)
Q Consensus       402 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l  476 (517)
                      +|++++|.+.+ +|. +..+++|+   .|++++| .+.+..+..|.++++|+ +|++++|+++.....++..++|++|++
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence            99999999985 665 88888998   9999999 88876677899999999 999999999877776777789999999


Q ss_pred             cCCc-CCccchhhhcCC-CcccEEECCCCcCCCCCCccccCC
Q 042271          477 SKNK-IEGRLESIIHDS-PHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       477 ~~n~-~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      ++|. ++...+..|..+ ++|+.|++++|++++..+..+.+|
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L  228 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL  228 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccC
Confidence            9995 998888999999 999999999999996555556554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.2e-21  Score=188.48  Aligned_cols=244  Identities=18%  Similarity=0.187  Sum_probs=175.2

Q ss_pred             CccccccccCCcCEeeccCCcCCCCCChhh---hhcccccceEeccCCccC---CCcccc-------cccCCcccEEEcc
Q 042271          218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWL---VENNANLERLLLADNSLF---GSFWMP-------IHSHQKLATLDVS  284 (517)
Q Consensus       218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~  284 (517)
                      .++..+..+++|+.|++++|.+.+..+..+   +..+++|++|++++|.+.   +..+..       +..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            345666777888888888888776544332   245788888888886443   222222       3678899999999


Q ss_pred             CCccccc----CChhhhhccCCCcEEEccCCcCCCCCchh----hhcC---------CCCcEEeccccccccccch---h
Q 042271          285 NNFFRGH----IPVEIGTYLPGLMDLNLSRNAFNGSIPSS----FADM---------KMLERVDISYNQLTGEIPE---R  344 (517)
Q Consensus       285 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~----~~~l---------~~L~~L~l~~~~i~~~~~~---~  344 (517)
                      +|.+++.    ++..+.. +++|++|++++|.+++..+..    +..+         ++|++|++++|.+.+....   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9988752    3444444 889999999999886433333    3444         8999999999998733222   3


Q ss_pred             HHhhcCCCcEEEccCCccccc-----ccccccCCCCCcEEEccCcccc----cccchhhhhcccCCeEEecCCCCCCc--
Q 042271          345 MAARCFSLEILALSNNSLQGH-----IFSEKFNLTNLMTLQLDGNKFT----GEILESLSKCYLLEGLYLSDNHLTGE--  413 (517)
Q Consensus       345 ~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~--  413 (517)
                      .+..+++|+.|++++|.+.+.     .+..+..+++|+.|++++|.++    ...+..+..+++|+.|++++|.+.+.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            455688999999999988732     2236778889999999999885    34566777888899999999988754  


Q ss_pred             --cchhhcC--CCCCcEEECCCCcccc----cccccc-cCCCCccEEEccCCccccCC
Q 042271          414 --IPRWLGN--LSALEDIIMPNNNLEG----PIPIEF-CQLNSLKILDLSNNSIFRTL  462 (517)
Q Consensus       414 --~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~  462 (517)
                        ++..+..  +++|+.|++++|.+.+    .++..+ .++++|++|++++|++++..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              4555533  7888888888888876    356555 55788888888888886654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.5e-20  Score=166.83  Aligned_cols=180  Identities=21%  Similarity=0.254  Sum_probs=138.9

Q ss_pred             cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271          277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA  356 (517)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  356 (517)
                      ..+.++++++.++ .+|..+   .+.++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence            4567777777776 666554   357888888888888777777888888888888888887 45555566678888888


Q ss_pred             ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271          357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG  436 (517)
Q Consensus       357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  436 (517)
                      +++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            88888877666677788888888888888876666667788888888888888886666678888888888888888886


Q ss_pred             cccccccCCCCccEEEccCCccccC
Q 042271          437 PIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       437 ~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      ..+..+..+++|++|++++|++...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6666788888888888888887554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.8e-21  Score=179.97  Aligned_cols=202  Identities=19%  Similarity=0.149  Sum_probs=119.7

Q ss_pred             cccEEEccCCcccccCChhhh-hccCCCcEEEccCCcCCCCCc----hhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          277 KLATLDVSNNFFRGHIPVEIG-TYLPGLMDLNLSRNAFNGSIP----SSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      +|++|++++|.+.+..+..+. ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+. .++...+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence            344444444444433333321 224455555555555443222    22234555555555555554 333333444555


Q ss_pred             CcEEEccCCccccc--c--cccccCCCCCcEEEccCcccccccch---hhhhcccCCeEEecCCCCCCccchhhcCC---
Q 042271          352 LEILALSNNSLQGH--I--FSEKFNLTNLMTLQLDGNKFTGEILE---SLSKCYLLEGLYLSDNHLTGEIPRWLGNL---  421 (517)
Q Consensus       352 L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---  421 (517)
                      |++|++++|.+.+.  .  ...+..+++|++|++++|.++.....   .+..+++|++|++++|.+.+..|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            55555555554321  1  12234677788888888877532111   24667888888888888886656666665   


Q ss_pred             CCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCc
Q 042271          422 SALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG  483 (517)
Q Consensus       422 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  483 (517)
                      ++|++|++++|++. .+|..+.  ++|++|++++|++++. +....+++|++|++++|.+++
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            68888888888888 4566553  7888888888888764 333447888888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.3e-20  Score=171.36  Aligned_cols=197  Identities=20%  Similarity=0.272  Sum_probs=165.6

Q ss_pred             hcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271          249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE  328 (517)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~  328 (517)
                      ..+++|++|+++++.+...  ..+..+++|+.|++++|.++ .++. + ..+++|++|++++|.+++.  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-L-KNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCC-CChh-H-ccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            4678999999999988664  35788999999999999997 4554 4 4489999999999999853  4688999999


Q ss_pred             EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC
Q 042271          329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN  408 (517)
Q Consensus       329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  408 (517)
                      +|++++|.+. .++.  +..+++|+.|++++|.+++...  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|
T Consensus       111 ~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          111 TLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             EEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            9999999998 4543  6679999999999999886543  7789999999999999985433  889999999999999


Q ss_pred             CCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271          409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       409 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      .+.+..+  +..+++|+.|++++|.+.+..  .+..+++|++|++++|++++...
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            9985443  888999999999999998654  37899999999999999966443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=3.4e-20  Score=161.92  Aligned_cols=179  Identities=22%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             cEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccC
Q 042271          304 MDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG  383 (517)
Q Consensus       304 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  383 (517)
                      +.++.+++.++. +|..+  .++|++|++++|.+. .++...+..+++|++|++++|.+++.....+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            345555555542 22222  345666666666665 44444445556666666666655544444455555666666665


Q ss_pred             cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271          384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       384 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      |.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            55554444445555555555555555554444445555555555555555554434445555555555555554422   


Q ss_pred             CCCCcccccEEEccCCcCCccchhhhcCC
Q 042271          464 SCFSPASIEQLHLSKNKIEGRLESIIHDS  492 (517)
Q Consensus       464 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~  492 (517)
                         .++.|++|+++.|.+++.+|..+..+
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence               12345555555555555444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.8e-19  Score=155.28  Aligned_cols=176  Identities=21%  Similarity=0.198  Sum_probs=96.4

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            34455555544 444333   335666666666655444444555666666666666555 4444444555566666666


Q ss_pred             CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271          359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI  438 (517)
Q Consensus       359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  438 (517)
                      +|.+++.....+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..  
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--  162 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--  162 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence            665554444445556666666666666554444445555666666666666554444445556666666666664432  


Q ss_pred             cccccCCCCccEEEccCCccccCCCCCC
Q 042271          439 PIEFCQLNSLKILDLSNNSIFRTLPSCF  466 (517)
Q Consensus       439 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~  466 (517)
                           .+++|+.|+++.|++++..+..+
T Consensus       163 -----~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          163 -----TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             -----CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             -----CCCCHHHHHHHHHhCCceeeccC
Confidence                 34455566666666555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=6e-19  Score=167.00  Aligned_cols=241  Identities=17%  Similarity=0.111  Sum_probs=164.2

Q ss_pred             ceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCC-chhhhcCCCCcE-Eec
Q 042271          255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI-PSSFADMKMLER-VDI  332 (517)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~-L~l  332 (517)
                      +.++.+++.++... ..+  .+++++|++++|.++ .++...+..+++|++|++++|.+.+.+ +.+|..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666665442 222  357888888888887 677665555888888888888875443 346777777765 445


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccC-cccccccchhhhhcc-cCCeEEecCCCC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCY-LLEGLYLSDNHL  410 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~  410 (517)
                      .+|++. .++...+..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            556676 66666777788888888888888766655666667777888765 456544455555554 577888888888


Q ss_pred             CCccchhhcCCCCCcEEECCC-CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhh
Q 042271          411 TGEIPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESII  489 (517)
Q Consensus       411 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  489 (517)
                      . .++.......+|+++++.+ |.+....+.+|.++++|++|++++|+++...+..  +.+|++|.+.++.--...| .+
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-CT
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-Cc
Confidence            7 4444444556788888875 5555444457788888888888888886654433  5677777776655333444 37


Q ss_pred             cCCCcccEEECCCCc
Q 042271          490 HDSPHLVTLDLSCNS  504 (517)
Q Consensus       490 ~~~~~L~~l~l~~n~  504 (517)
                      ..+++|+.++++++.
T Consensus       243 ~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          243 EKLVALMEASLTYPS  257 (350)
T ss_dssp             TTCCSCCEEECSCHH
T ss_pred             hhCcChhhCcCCCCc
Confidence            778888888887543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.4e-18  Score=159.57  Aligned_cols=173  Identities=22%  Similarity=0.273  Sum_probs=136.9

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+ ++.  +..+++|+.|++++|.+++.  ..+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            67899999999988744  357888999999999999884 444  66788999999999988763  347788999999


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      ++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            9999988753  4677888899999999988754  567888889999999888886544  778888899999888886


Q ss_pred             cCCCCCCCcccccEEEccCCcCCccch
Q 042271          460 RTLPSCFSPASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~  486 (517)
                      +. +....+++|+.|++++|.++....
T Consensus       192 ~l-~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          192 DL-RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             BC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CC-hhhccCCCCCEEECcCCcccCCcc
Confidence            64 334447888888888888765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.4e-18  Score=172.86  Aligned_cols=186  Identities=25%  Similarity=0.291  Sum_probs=107.2

Q ss_pred             cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271          277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA  356 (517)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  356 (517)
                      +++.|+++++.++ .+|..+   +++|++|++++|.++ .+|   ..+++|++|++++|.+.+ +|.  +.  .+|+.|+
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~--~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LP--ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CC--TTCCEEE
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hh--cCCCEEE
Confidence            6777777777776 355544   356777777777776 344   345677777777777663 554  21  1667777


Q ss_pred             ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271          357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG  436 (517)
Q Consensus       357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  436 (517)
                      +++|.+++.. .   .+++|+.|++++|.++. .+.   .+++|+.|++++|.+.+ +|. +.  ++|+.|++++|.+. 
T Consensus       127 Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          127 VDNNQLTMLP-E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCCcCCCCC-C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            7777666522 2   45666666666666653 222   34566666666666653 443 33  56666666666665 


Q ss_pred             cccccccCCCCc-------cEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcC
Q 042271          437 PIPIEFCQLNSL-------KILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD  491 (517)
Q Consensus       437 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  491 (517)
                      .+|. +..  +|       +.|++++|+++......+.+++|+.|++++|.+++..|..+..
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            3333 332  44       6666666666543333334556666666666665555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.4e-19  Score=167.49  Aligned_cols=178  Identities=27%  Similarity=0.203  Sum_probs=136.6

Q ss_pred             cEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc-CCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271          328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS  406 (517)
Q Consensus       328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  406 (517)
                      +.++++++.+. .+|..+   .+.++.|++++|.+++.....+. .+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            45666666665 455433   23567777777777766655665 77888888888888876666677888888888888


Q ss_pred             CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC----CcccccEEEccCCcCC
Q 042271          407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF----SPASIEQLHLSKNKIE  482 (517)
Q Consensus       407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~l~~n~~~  482 (517)
                      +|.+....+..|..+++|+.|++++|.+....+..|.++++|++|+|++|+++......+    .+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            888876556678888888888888888887777788888888899998888877665554    3789999999999998


Q ss_pred             ccchhhhcCCCc--ccEEECCCCcCCCCC
Q 042271          483 GRLESIIHDSPH--LVTLDLSCNSLHGSI  509 (517)
Q Consensus       483 ~~~~~~l~~~~~--L~~l~l~~n~~~~~~  509 (517)
                      ...+..|..++.  ++.|+|++|++.+.+
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            888888888887  488999999998765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=2.2e-18  Score=163.14  Aligned_cols=224  Identities=16%  Similarity=0.101  Sum_probs=176.3

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcE-EEc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEI-LAL  357 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~-L~l  357 (517)
                      ++++.++++++ .+|..+   ++++++|++++|.++...+.+|.++++|++|++++|.+.+.++...|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888888888 888766   4689999999999996666789999999999999999987888888888888776 556


Q ss_pred             cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC-CCCCccchhhcCCC-CCcEEECCCCccc
Q 042271          358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN-HLTGEIPRWLGNLS-ALEDIIMPNNNLE  435 (517)
Q Consensus       358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~  435 (517)
                      ..|.+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..|..+. .++.|++++|++.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            678888887888999999999999999998666666667778888998764 56644445666664 6889999999998


Q ss_pred             ccccccccCCCCccEEEccC-CccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          436 GPIPIEFCQLNSLKILDLSN-NSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       436 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ...+..| ...+|+++++++ |.++.....++. +++|++|++++|.++..++..|.+++   .|.+.+++--..+|
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLP  240 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCC
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCC
Confidence            5444444 567899999986 567665556655 89999999999999988777776554   44444443333555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.7e-18  Score=149.21  Aligned_cols=155  Identities=22%  Similarity=0.228  Sum_probs=76.7

Q ss_pred             cEEeccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271          328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS  406 (517)
Q Consensus       328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  406 (517)
                      +.++++++.+. .+|..+   .+.++.|++++|.++.... ..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35666666655 444432   2244555555555554322 234445555555555555544444444445555555555


Q ss_pred             CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccch
Q 042271          407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  486 (517)
                      +|.+.+..+..|..+++|++|++++|.+.+..+..|..+                       ++|++|++++|.+++..+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----------------------~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-----------------------SSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-----------------------TTCSEEECTTSCCCCBCT
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-----------------------ccCCEEECCCCcCCEECH
Confidence            555444444444444444444444444444334444444                       555555555555555545


Q ss_pred             hhhcCCCcccEEECCCCcCCCCC
Q 042271          487 SIIHDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       487 ~~l~~~~~L~~l~l~~n~~~~~~  509 (517)
                      ..|..+++|++|++++|++++.+
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEECSG
T ss_pred             HHhcCCCCCCEEEecCcCCcCCC
Confidence            55555555555555555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4e-18  Score=149.67  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=91.0

Q ss_pred             cEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecC
Q 042271          328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD  407 (517)
Q Consensus       328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (517)
                      +.++++++.+. .+|..+   .++++.|++++|.+.......+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            46677777666 555433   24667777777766665555666666666666666666655566666666666666666


Q ss_pred             CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcC
Q 042271          408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKI  481 (517)
Q Consensus       408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~  481 (517)
                      |.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            666644444455666666666666666655555565666666666666665555444333 45555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.8e-18  Score=156.10  Aligned_cols=193  Identities=22%  Similarity=0.329  Sum_probs=157.6

Q ss_pred             ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271          253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI  332 (517)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  332 (517)
                      ++..+.+....+.+.  .....+++|+.|++++|.+. .++. +. .+++|++|++++|.+++..+  +..+++|++|++
T Consensus        25 ~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            344445555554433  23456789999999999987 5543 33 38999999999999986543  899999999999


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG  412 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  412 (517)
                      ++|.+. .++.  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus        98 ~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           98 DENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            999988 4443  66799999999999999874  4678899999999999999864  678899999999999999986


Q ss_pred             ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271          413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       413 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      ..+  +..+++|+.|++++|.+.+. + .+..+++|+.|++++|+++....
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence            544  89999999999999999863 3 48899999999999999866443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=2.4e-18  Score=173.09  Aligned_cols=203  Identities=18%  Similarity=0.219  Sum_probs=156.7

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ..+..+.+..+.+.+..+.   ..++.|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++.  +..+++|+.|
T Consensus        21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEE
T ss_pred             HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEE
Confidence            3455566666666533332   2378999999999998743 3 68889999999999999884 443  6678999999


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      ++++|.+.+.  ..+..+++|+.|++++|.+.+  ...+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus        93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            9999988763  367789999999999999875  34688899999999999998854  57888999999999999998


Q ss_pred             ccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcc
Q 042271          436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHL  495 (517)
Q Consensus       436 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  495 (517)
                      +..+  +..+++|++|+|++|++++. +....+++|+.|++++|.+...+...+..+..+
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~  223 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP  223 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence            6555  88899999999999998664 444448899999999998876544444433333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.1e-17  Score=147.91  Aligned_cols=137  Identities=20%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 042271          374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL  453 (517)
Q Consensus       374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  453 (517)
                      ++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            44445555555444444444445555555555555554333344455555555555555555444444555555555555


Q ss_pred             cCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          454 SNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       454 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ++|+++........+++|++|++++|.+++..+..|..+++|++|++++|++++.++
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            555554332222235555555665555555555555666666666666666655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=4.3e-18  Score=171.26  Aligned_cols=195  Identities=22%  Similarity=0.324  Sum_probs=161.5

Q ss_pred             cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271          252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD  331 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~  331 (517)
                      ..+..+.+....+.+.  .....+++|+.|+++++.+. .++. +. .+++|+.|+|++|.+.+..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            4455666666665544  23567889999999999987 5553 33 48999999999999986544  89999999999


Q ss_pred             ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|.+. .++  .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus        94 Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           94 LDENKIK-DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CCSSCCC-CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CcCCCCC-CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            9999998 444  356799999999999999864  4688999999999999999864  67889999999999999999


Q ss_pred             CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271          412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      +..|  +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|++++....
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence            6655  89999999999999999864  4688999999999999999775443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5.5e-18  Score=146.30  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=89.8

Q ss_pred             cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271          349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII  428 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  428 (517)
                      +++|+.|++++|.+.+..  .+..+++|++|++++|.+..  ...+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            334455555554444221  34455555555555554432  23455666666666666666654555666666777777


Q ss_pred             CCCCcccccccccccCCCCccEEEccCCc-cccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271          429 MPNNNLEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      +++|.+.+..+..+..+++|++|++++|+ ++. .+....+++|++|++++|.+++..  .+..+++|++|++++|+|.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            77776665556666677777777777776 433 333333677777777777776543  5677778888888888775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=3.1e-17  Score=143.95  Aligned_cols=152  Identities=22%  Similarity=0.229  Sum_probs=80.4

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCc-hhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL  357 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l  357 (517)
                      +.++++++.++ .+|..+   .+.+++|++++|.+++..+ ..|..+++|++|++++|.+.                   
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------   70 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------   70 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-------------------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-------------------
Confidence            35666666554 445433   2344555555555553322 23445555555555555544                   


Q ss_pred             cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc
Q 042271          358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP  437 (517)
Q Consensus       358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  437 (517)
                            +.....+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus        71 ------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           71 ------DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             ------EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             ------EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence                  43333444555555555555555544444455555555555555555544455555555555555555555554


Q ss_pred             ccccccCCCCccEEEccCCccc
Q 042271          438 IPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       438 ~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      .+..|..+++|++|++++|++.
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCCEE
T ss_pred             CHHHhcCCCCCCEEEecCcCCc
Confidence            4555555666666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=9.7e-18  Score=157.33  Aligned_cols=196  Identities=14%  Similarity=0.068  Sum_probs=127.8

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcc----cccccccccCCCC
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSL----QGHIFSEKFNLTN  375 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~~~~  375 (517)
                      +++|+.+++.+ .++.....+|.+|++|+.+++.+|.+. .++...|.++.++..+.......    ..+...+|..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666655 555444555666666666666666555 45555555555444444433211    1111222333333


Q ss_pred             C--------------------------cEEEccCcccccccchhh-hhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271          376 L--------------------------MTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII  428 (517)
Q Consensus       376 L--------------------------~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  428 (517)
                      |                          ..+.+.+.-.. .....+ ..|++|+.+++.+|.+......+|.+|.+|++++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            3                          34444333211 111122 2478899999999888866677899999999999


Q ss_pred             CCCCcccccccccccCCCCcc-EEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEEC
Q 042271          429 MPNNNLEGPIPIEFCQLNSLK-ILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL  500 (517)
Q Consensus       429 l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l  500 (517)
                      +.++ +..+.+.+|.++++|+ .+++.+ +++.+...+|. +++|++|++++|.++.+.+.+|.+|++|+++..
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9887 6656677899999998 999988 67677777776 889999999999998888889999999998853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=4.4e-17  Score=143.01  Aligned_cols=151  Identities=24%  Similarity=0.271  Sum_probs=78.0

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      +.++++++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+. .+....+.++++|+.|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence            45666666665 555543   246666666666666555555666666666666666655 3333334445555555555


Q ss_pred             CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271          359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL  434 (517)
Q Consensus       359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  434 (517)
                      +|.++......|..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            5555544333444445555555555554444444444444444444444444433333344444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=4.9e-17  Score=140.29  Aligned_cols=150  Identities=16%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +++|+.|++++|.++ .++ .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            556667777766666 333 4666677777777776554 222  23446667777777766665555566667777777


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  458 (517)
                      ++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            777777765556666677777777777776 44 333 46666666666666666664 22 555666666666666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1.8e-17  Score=157.48  Aligned_cols=156  Identities=28%  Similarity=0.233  Sum_probs=72.4

Q ss_pred             cccEEEccCCcccccCChhhhh-ccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          277 KLATLDVSNNFFRGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      .++.|++++|.++ .++...+. .+++|+.|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEE
Confidence            3455555555554 22222221 2455555555555555444444555555555555555544 3444444445555555


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCcccccccchhh---hhcccCCeEEecCCCCCCccchhhcCCCC--CcEEECC
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESL---SKCYLLEGLYLSDNHLTGEIPRWLGNLSA--LEDIIMP  430 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~  430 (517)
                      ++++|.+....+..|..+++|+.|++++|.+.......+   ..+++|+.|++++|.+....+..+..++.  ++.|++.
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            555555544444444455555555555555543322222   33445555555555554333334444443  2444555


Q ss_pred             CCcc
Q 042271          431 NNNL  434 (517)
Q Consensus       431 ~~~~  434 (517)
                      +|.+
T Consensus       198 ~N~~  201 (361)
T 2xot_A          198 NNPL  201 (361)
T ss_dssp             SSCE
T ss_pred             CCCc
Confidence            4444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=9.1e-18  Score=157.49  Aligned_cols=293  Identities=15%  Similarity=0.178  Sum_probs=177.8

Q ss_pred             CCCcceEEeccccccCCcchhhhhh-cccCcEEEecCCccc--CCccccccCCCCCcEEEccCCccCCCCCcchhc----
Q 042271           30 SKPSLKFLSLINSSKNTILDQGLRQ-LVHLQELYIGGYDLR--GSLPWCLANMTSLQVLYASSNELTGNISPGLCE----  102 (517)
Q Consensus        30 ~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----  102 (517)
                      .++++++|.+++.. .......+.. +++|++|+|++|++.  .....   .++.++.+.+..+.+.   ...|.+    
T Consensus        23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~   95 (329)
T 3sb4_A           23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNG   95 (329)
T ss_dssp             HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred             hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccc
Confidence            46688999998542 2112223444 678999999999987  22222   2233556666666444   245677    


Q ss_pred             ----cccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc
Q 042271          103 ----LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL  178 (517)
Q Consensus       103 ----l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  178 (517)
                          +++|+.+++.+ .++.+.+.+|.+|++|+++++.++.+.. ++...|..+.++..+...........         
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~---------  164 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFK---------  164 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTS---------
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhcc---------
Confidence                99999999999 8886777889999999999999998864 66668888877777766542200000         


Q ss_pred             ccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcC-EeeccCCcCCCCCChhhhhcccccceE
Q 042271          179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLK-NADLSHLNLSGKFPNWLVENNANLERL  257 (517)
Q Consensus       179 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L  257 (517)
                      ..                                     .....+..+..++ .+.+...   +.++..++...      
T Consensus       165 ~~-------------------------------------i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~------  198 (329)
T 3sb4_A          165 NR-------------------------------------WEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG------  198 (329)
T ss_dssp             TT-------------------------------------TTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT------
T ss_pred             cc-------------------------------------ccccccccccccceeEEecCC---CcHHHHHhhcc------
Confidence            00                                     0000111222222 1111111   01111111110      


Q ss_pred             eccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccc
Q 042271          258 LLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL  337 (517)
Q Consensus       258 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i  337 (517)
                                     ....++..+.+.+.-.. .....+...+++|+.+++++|.++.....+|.+|++|+++++.++ +
T Consensus       199 ---------------~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i  261 (329)
T 3sb4_A          199 ---------------LQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L  261 (329)
T ss_dssp             ---------------CCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             ---------------cCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence                           01123333444332111 111122223677888888777777666667778888888888776 5


Q ss_pred             ccccchhHHhhcCCCc-EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEe
Q 042271          338 TGEIPERMAARCFSLE-ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL  405 (517)
Q Consensus       338 ~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  405 (517)
                      . .++...|.+|++|+ .+.+.+ .++.....+|.+|++|+.+++.++.+..+...+|.+|++|+.++.
T Consensus       262 ~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          262 K-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             C-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             c-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            4 67777777788887 888877 666666677888888888888777777677777888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=6.2e-17  Score=160.99  Aligned_cols=179  Identities=24%  Similarity=0.258  Sum_probs=87.0

Q ss_pred             ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271          253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI  332 (517)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  332 (517)
                      +++.|+++++.+.+. +..+  +++|+.|++++|.++ .+|    ..+++|+.|++++|.+++ ++. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            555555555555442 1111  245555555555554 444    114555555555555553 333 322  5555555


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG  412 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  412 (517)
                      ++|.+.+ +|.    .+++|+.|++++|.+++...    .+++|++|++++|.++. .+. +.  ++|+.|++++|.+. 
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            5555552 443    24555555555555544221    34555555555555543 222 32  45555555555555 


Q ss_pred             ccchhhcCCCCC-------cEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271          413 EIPRWLGNLSAL-------EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       413 ~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      .+|. +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|++++.
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            3333 322  44       55555555555 3444444455555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.2e-17  Score=151.00  Aligned_cols=172  Identities=21%  Similarity=0.224  Sum_probs=137.8

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +.++..++++++.+++..  .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.+++...  +..+++|++|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            456788889999887433  6788999999999999987 555  35568999999999999887554  8889999999


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      ++++|.+.+...  +.. ++|+.|++++|.+.+ ++ .+..+++|+.|++++|++.+. + .+..+++|++|++++|+++
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            999999875322  233 889999999999884 33 588899999999999999864 3 6788899999999999997


Q ss_pred             cCCCCCCCcccccEEEccCCcCCccch
Q 042271          460 RTLPSCFSPASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~  486 (517)
                      +. .....+++|+.|++++|.++....
T Consensus       164 ~~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          164 NT-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             BC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             ch-HHhccCCCCCEEeCCCCcccCCcc
Confidence            76 444448899999999998876543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=4.8e-16  Score=149.59  Aligned_cols=335  Identities=13%  Similarity=0.077  Sum_probs=156.0

Q ss_pred             cCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccccc
Q 042271           44 KNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLC  123 (517)
Q Consensus        44 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  123 (517)
                      +..+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.++++.+ +......+|..+.+|+.+.+..+ +..+...+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            45566667777777777777543 55455667777777777777654 44333456667777777666544 23244455


Q ss_pred             ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcc
Q 042271          124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF  203 (517)
Q Consensus       124 ~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  203 (517)
                      |..+..++........   .+....|..|++|+.+.+..+.. .  .....+..+..|+.+                   
T Consensus       136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~-~--I~~~~F~~c~~L~~i-------------------  190 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME-T--LHNGLFSGCGKLKSI-------------------  190 (394)
T ss_dssp             TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC-E--ECTTTTTTCTTCCBC-------------------
T ss_pred             eecccccccccCcccc---ccchhhhcccCCCcEEecCCccc-e--eccccccCCCCceEE-------------------
Confidence            6665444333322222   23334577777777777654321 0  111122222222222                   


Q ss_pred             eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271          204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV  283 (517)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  283 (517)
                                                   .+..+ +. .++...+..+..|+.+.+..+...  .......+..|+.+.+
T Consensus       191 -----------------------------~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~i  237 (394)
T 4fs7_A          191 -----------------------------KLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIII  237 (394)
T ss_dssp             -----------------------------CCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEE
T ss_pred             -----------------------------EcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEE
Confidence                                         22111 00 111111223333333333222110  0011122234444444


Q ss_pred             cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271          284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ  363 (517)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~  363 (517)
                      .... + .+....+..+..++.+.+..+... ....++..+..++.+......    ++...+..+.+|+.+.+..+ +.
T Consensus       238 p~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~  309 (394)
T 4fs7_A          238 PDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VK  309 (394)
T ss_dssp             CTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CC
T ss_pred             CCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cc
Confidence            3321 1 222222333555555555544322 333455555555555554432    23344445556666665443 33


Q ss_pred             ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271          364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  443 (517)
                      .....+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ +......+|.+|.+|+.+++..+--  ....+|.
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~--~~~~~F~  385 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE--QYRYDFE  385 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG--GGGGGBC
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE--Ehhheec
Confidence            333445555666666655433 33344455556666666665544 3333445555555566555543311  1223455


Q ss_pred             CCCCccEE
Q 042271          444 QLNSLKIL  451 (517)
Q Consensus       444 ~~~~L~~L  451 (517)
                      ++++|+.+
T Consensus       386 ~c~~L~~I  393 (394)
T 4fs7_A          386 DTTKFKWI  393 (394)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCCcEE
Confidence            55555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=4.1e-16  Score=150.05  Aligned_cols=334  Identities=13%  Similarity=0.064  Sum_probs=187.0

Q ss_pred             ccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCC
Q 042271           68 LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSS  147 (517)
Q Consensus        68 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  147 (517)
                      ++.+...+|.+|.+|+.+.++.+ ++.....+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence            55566788999999999999865 66555678999999999999865 55455678999999998877654 22 24444


Q ss_pred             cccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccC
Q 042271          148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH  227 (517)
Q Consensus       148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  227 (517)
                      .|..+..+.........                                                    ......+..+.
T Consensus       135 aF~~~~~~~~~~~~~~~----------------------------------------------------~i~~~aF~~c~  162 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVT----------------------------------------------------VIGDEAFATCE  162 (394)
T ss_dssp             TTTTCCCSEEECCTTCC----------------------------------------------------EECTTTTTTCT
T ss_pred             eeecccccccccCcccc----------------------------------------------------ccchhhhcccC
Confidence            56655432222211110                                                    00012334455


Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      +|+.+.+.... . .++...+.++.+|+.+.+..+ +......++..+..|+.+.+..+...  +...            
T Consensus       163 ~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~------------  225 (394)
T 4fs7_A          163 SLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDF------------  225 (394)
T ss_dssp             TCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTT------------
T ss_pred             CCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehh------------
Confidence            56655554321 1 233333455666666666543 22222334445555555544433211  1111            


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT  387 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~  387 (517)
                                   ...+.+|+.+.+.... . .+....+.++..++.+.+..+.. ......|..++.++.+......+.
T Consensus       226 -------------~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~  289 (394)
T 4fs7_A          226 -------------ALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP  289 (394)
T ss_dssp             -------------TTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC
T ss_pred             -------------hcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec
Confidence                         1222344444443221 1 23333344455555555544321 233344555666666655544332


Q ss_pred             cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271          388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS  467 (517)
Q Consensus       388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  467 (517)
                         ...+..|.+|+.+.+.++ +......+|.+|.+|+.+++.++ +..+...+|.+|.+|+.+++..+ ++.+...+|.
T Consensus       290 ---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          290 ---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             ---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             ---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence               345666667777776554 44344566777777777777644 44344567777777777777665 5555566665


Q ss_pred             -cccccEEEccCCcCCccchhhhcCCCcccEE
Q 042271          468 -PASIEQLHLSKNKIEGRLESIIHDSPHLVTL  498 (517)
Q Consensus       468 -~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l  498 (517)
                       +.+|+++++..+ ++ ....+|.+|++|+.+
T Consensus       364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence             677888877654 22 234678888888875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=2.8e-16  Score=138.85  Aligned_cols=152  Identities=23%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             ccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEc
Q 042271          278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL  357 (517)
Q Consensus       278 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l  357 (517)
                      -+.++.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence            456777777665 666544   367888888888888777777888888888888888876 666666666777777777


Q ss_pred             cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271          358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      ++|.++......+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            777777655555667777777777777776 44556666777777777777776544455666666666666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.7e-17  Score=148.58  Aligned_cols=173  Identities=20%  Similarity=0.225  Sum_probs=144.1

Q ss_pred             cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271          274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE  353 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~  353 (517)
                      .+.++..++++++.++ .++ .+. .+++|+.|++++|.++. ++ .+..+++|++|++++|.+. .++.  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence            4557788889998887 444 233 38899999999999984 44 7889999999999999998 4554  67799999


Q ss_pred             EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCc
Q 042271          354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN  433 (517)
Q Consensus       354 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  433 (517)
                      .|++++|.+++...  +.. ++|++|++++|.+.+.  ..+..+++|+.|++++|++.+. + .+..+++|+.|++++|.
T Consensus        89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence            99999999986432  223 9999999999999853  4688999999999999999854 4 68899999999999999


Q ss_pred             ccccccccccCCCCccEEEccCCccccCCC
Q 042271          434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLP  463 (517)
Q Consensus       434 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  463 (517)
                      +.+.  ..+..+++|+.|++++|+++....
T Consensus       162 i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          162 ITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             Ccch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            9865  678899999999999999976543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=7e-16  Score=147.52  Aligned_cols=265  Identities=14%  Similarity=0.155  Sum_probs=169.0

Q ss_pred             cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271          226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD  305 (517)
Q Consensus       226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  305 (517)
                      +..++.+.+... +. .++...+.++ +|+.+.+..+ +......+|..+ +|+.+.+.. .+. .+....+..|++|+.
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            355666666442 22 2222223343 6777777655 444444455554 577777775 444 455555555777888


Q ss_pred             EEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271          306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       306 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      +++.++.++.....+|. +.+|+.+.+..+ +. .++...|.+|++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            88877777655555555 577777777644 44 666777777777888877764 44445555655 677777774 33


Q ss_pred             cccccchhhhhcccCCeEEecCCCCC-----CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271          386 FTGEILESLSKCYLLEGLYLSDNHLT-----GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       386 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      +..+...+|.+|++|+.+.+.++.+.     .....+|.+|++|+.+.+.+ .+..+...+|.+|.+|+.++|..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            44455677777888888887776553     24456777778888887774 355455667777778888887544 555


Q ss_pred             CCCCCCCcccccEEEccCCcCCccchhhhcCCC-cccEEECCCCcC
Q 042271          461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSP-HLVTLDLSCNSL  505 (517)
Q Consensus       461 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~l~l~~n~~  505 (517)
                      +...+|...+|+++++.+|.+....+..|.+++ +++.+.+..+.+
T Consensus       337 I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            566666622788888877777666666777774 677777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=2.3e-15  Score=143.88  Aligned_cols=216  Identities=13%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271          253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI  332 (517)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l  332 (517)
                      +|+.+.+.. .+......+|..|++|+.+++..+.++ .++...+. +.+|+.+.+..+ +......+|..|++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            345554443 233333334444555555555544444 34444333 345555555422 33333444555555555555


Q ss_pred             cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc-----cccchhhhhcccCCeEEecC
Q 042271          333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT-----GEILESLSKCYLLEGLYLSD  407 (517)
Q Consensus       333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~  407 (517)
                      ..+ +. .+....|.+ .+|+.+.+. +.+......+|.+|++|+.+++.++.+.     .+...+|.+|++|+.+.+.+
T Consensus       234 ~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          234 PEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             CTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             CCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            442 22 344444443 345555552 2233333344445555555555444332     23334445555555555542


Q ss_pred             CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-c-ccccEEEccCC
Q 042271          408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-P-ASIEQLHLSKN  479 (517)
Q Consensus       408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~-~~L~~L~l~~n  479 (517)
                       .+......+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+++++|.........+. + ..++.|++..+
T Consensus       310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence             233333344555555555555333 222333444444 555555555444333333333 1 34444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1.9e-17  Score=165.57  Aligned_cols=203  Identities=20%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             ccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCc-------------CCCCCchhhhcCCCCcEEe-ccccccc
Q 042271          273 HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNA-------------FNGSIPSSFADMKMLERVD-ISYNQLT  338 (517)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------i~~~~~~~~~~l~~L~~L~-l~~~~i~  338 (517)
                      ..++.|+.|++++|.++ .+|..+.. +++|+.|++++|.             ..+..+..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34556666666666665 56666655 6666666665443             2334455556666666666 4444332


Q ss_pred             cccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhh
Q 042271          339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWL  418 (517)
Q Consensus       339 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  418 (517)
                       .++           .+.+.+|.+....      ...|+.|++++|.+++ .+. +..+++|+.|++++|.+. .+|..+
T Consensus       424 -~L~-----------~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          424 -DLR-----------SKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             -HHH-----------HHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             -hhh-----------hhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence             111           1111122221110      1235555555555553 233 555556666666666655 455555


Q ss_pred             cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC-CCCCC-cccccEEEccCCcCCccch---hhhcCCC
Q 042271          419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL-PSCFS-PASIEQLHLSKNKIEGRLE---SIIHDSP  493 (517)
Q Consensus       419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~-~~~L~~L~l~~n~~~~~~~---~~l~~~~  493 (517)
                      ..+++|+.|++++|.+.+ +| .+..+++|+.|++++|++++.. +..+. +++|+.|++++|.+++.++   ..+..+|
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            666666666666666654 34 5555666666666666665543 33333 5666666666666654433   2344466


Q ss_pred             cccEEEC
Q 042271          494 HLVTLDL  500 (517)
Q Consensus       494 ~L~~l~l  500 (517)
                      +|+.|++
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            6766653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.2e-16  Score=130.25  Aligned_cols=138  Identities=22%  Similarity=0.182  Sum_probs=95.6

Q ss_pred             CCCCcEEEccCcccc-cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271          373 LTNLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL  451 (517)
Q Consensus       373 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  451 (517)
                      .++|++|++++|.+. +..+..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            456666666666665 33444556667777777777776643  556677777777777777775566666667777788


Q ss_pred             EccCCccccCC--CCCCCcccccEEEccCCcCCccch---hhhcCCCcccEEECCCCcCCCCCCccc
Q 042271          452 DLSNNSIFRTL--PSCFSPASIEQLHLSKNKIEGRLE---SIIHDSPHLVTLDLSCNSLHGSIPNQI  513 (517)
Q Consensus       452 ~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~l~l~~n~~~~~~~~~~  513 (517)
                      ++++|++++..  .....+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|..-
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence            88777776643  233336788888888888876665   57888899999999999887 555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=8.2e-16  Score=131.83  Aligned_cols=128  Identities=22%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             cEEEccCCcccccccccccCCCCCcEEEccCcccccccch-hhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      +.++++++.++... ..+  .+++++|++++|.+....+. .+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56677776665332 222  23667777777766644432 356666677777777766655566666666666666666


Q ss_pred             CcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCc
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEG  483 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~  483 (517)
                      |++.+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            666655555566666666666666666655555444 5666666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=2.3e-15  Score=126.26  Aligned_cols=135  Identities=21%  Similarity=0.182  Sum_probs=114.3

Q ss_pred             CCCCcceEEeccccccC--CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271           29 ESKPSLKFLSLINSSKN--TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM  106 (517)
Q Consensus        29 ~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  106 (517)
                      ...+.|++|+++++.+.  .++. .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            45678999999988887  7765 678999999999999999855  778899999999999999997678777889999


Q ss_pred             cEEEccccccCCcc-cccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecccCCCCC
Q 042271          107 RELHIDNNDLRGSL-PLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILSNNHFFQ  167 (517)
Q Consensus       107 ~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~  167 (517)
                      ++|++++|.+++.. +..+..+++|++|++++|.+.+ .+.   ..+..+++|++|++++|.+..
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999999998642 2788999999999999999975 443   367889999999999997533

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.3e-15  Score=127.92  Aligned_cols=109  Identities=28%  Similarity=0.319  Sum_probs=54.6

Q ss_pred             cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEcc
Q 042271          399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLS  477 (517)
Q Consensus       399 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~  477 (517)
                      ++++|++++|.+. .+|..+..+++|+.|++++|.+.+..+.+|.++++|++|++++|+++...+..+. +++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4444444444444 3334444445555555555555444444455555555555555555444443333 4555555555


Q ss_pred             CCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271          478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      +|.++...+..|..+++|+.|++++|++++.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            5555544444555555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.7e-16  Score=132.37  Aligned_cols=130  Identities=25%  Similarity=0.296  Sum_probs=86.6

Q ss_pred             cEEeccccccccccchhHHhhcCCCcEEEccCCcccccccc-cccCCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271          328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS-EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS  406 (517)
Q Consensus       328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  406 (517)
                      +.++++++.+. .+|..+.   ++++.|++++|.+.+.... .+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            45566666554 4554332   2566666666666554432 35666777777777777766666667777777777777


Q ss_pred             CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271          407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      +|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            7777765666677777777777777777766677777777888888888777544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=4.8e-17  Score=162.73  Aligned_cols=194  Identities=19%  Similarity=0.158  Sum_probs=138.9

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      ++.|+.|++++|.++ .+|..+..+++|+.|++++|......+....            .+...+..+..+..+++|+.|
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHHHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcccC
Confidence            567778888888776 5677777888888888765532111111000            001122233344455555555


Q ss_pred             E-ccCcccccccc-----hhhhh--cccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271          380 Q-LDGNKFTGEIL-----ESLSK--CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL  451 (517)
Q Consensus       380 ~-l~~~~~~~~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  451 (517)
                      + ++.+.+.....     ..+..  ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus       415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  491 (567)
T 1dce_A          415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL  491 (567)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE
Confidence            5 44443321110     01111  2369999999999985 676 999999999999999999 678899999999999


Q ss_pred             EccCCccccCCCCCCCcccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCCC
Q 042271          452 DLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       452 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ++++|++++. +....+++|++|++++|.+++.. |..|..+++|+.|++++|++++.+|
T Consensus       492 ~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          492 QASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             ECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999999874 45445899999999999999887 8999999999999999999996655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1e-15  Score=125.60  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=100.1

Q ss_pred             CCCCcceEEeccccccC--CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271           29 ESKPSLKFLSLINSSKN--TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM  106 (517)
Q Consensus        29 ~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  106 (517)
                      ...++|++|+++++.+.  .++. .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            34577888888877776  5554 677888888888888888754  677888888888888888886577777778888


Q ss_pred             cEEEccccccCCc-ccccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecc
Q 042271          107 RELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILS  161 (517)
Q Consensus       107 ~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~  161 (517)
                      ++|++++|.+++. .+..+..+++|++|++++|.+.+ .+.   ..+..+++|++|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence            8888888888753 34778888888888888888865 333   357778888888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=6.1e-15  Score=124.78  Aligned_cols=113  Identities=21%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             ccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEc
Q 042271          398 YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHL  476 (517)
Q Consensus       398 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l  476 (517)
                      ++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            3556666666655544444455566666666666666544444555666666666666666555544433 566666666


Q ss_pred             cCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          477 SKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       477 ~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      ++|.+++.++..|..+++|++|++++|++++.+|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6666665555566666666666666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.1e-15  Score=123.69  Aligned_cols=125  Identities=21%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             CCcEEEccCcccc-cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 042271          375 NLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL  453 (517)
Q Consensus       375 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  453 (517)
                      +++.|++++|.+. +..+..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444433 22233334444444444444444422  33444444555555555444334444444555555555


Q ss_pred             cCCccccCC--CCCCCcccccEEEccCCcCCccch---hhhcCCCcccEEECC
Q 042271          454 SNNSIFRTL--PSCFSPASIEQLHLSKNKIEGRLE---SIIHDSPHLVTLDLS  501 (517)
Q Consensus       454 ~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~l~l~  501 (517)
                      ++|++++..  .....+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555554321  122224555555555555555444   466677777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=2.5e-13  Score=130.59  Aligned_cols=132  Identities=17%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             hhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcc
Q 042271          319 SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY  398 (517)
Q Consensus       319 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  398 (517)
                      .+|..|..|+.+.+.....  .+....+.++++|+.+.+.. .+......+|.+|.+|+.+++..+ ++.+...+|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            3455555555555544321  34444555566666666542 333344455666666666666543 3334456667777


Q ss_pred             cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271          399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       399 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  458 (517)
                      +|+.+.+.++ ++.....+|.+|.+|+.+++.++....   .++..+.+|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            7777777543 443455667777777777777665431   3455666777777765543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=7.8e-16  Score=158.95  Aligned_cols=181  Identities=26%  Similarity=0.296  Sum_probs=104.8

Q ss_pred             CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh
Q 042271          316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS  395 (517)
Q Consensus       316 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  395 (517)
                      ..+..+..++.|+.|++++|.+. .++..++ .+++|+.|+|++|.++ .++..+..+++|++|+|++|.+. .++..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            34566777788888888888877 6766665 4778888888888877 45566778888888888888887 5577788


Q ss_pred             hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCC-CccEEEccCCccccCCCCCCCcccccEE
Q 042271          396 KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLN-SLKILDLSNNSIFRTLPSCFSPASIEQL  474 (517)
Q Consensus       396 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L  474 (517)
                      .+++|+.|++++|.+. .+|..|..+++|+.|++++|.+.+..|..+.... .+..+++++|.+++..+     ..|+.|
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l  364 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFI  364 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC----
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----ccccee
Confidence            8888888888888887 6676788888888888888888877766664432 22346778887765444     456667


Q ss_pred             EccCC--------cCCccchhhhcCCCcccEEECCCCcCC
Q 042271          475 HLSKN--------KIEGRLESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       475 ~l~~n--------~~~~~~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      +++.|        .+....+..+.++..++...+++|-+.
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -------------------------------------CCC
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            77666        233334444555666667777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.2e-14  Score=122.84  Aligned_cols=125  Identities=20%  Similarity=0.334  Sum_probs=86.9

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN  114 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  114 (517)
                      ++++++++.+..++.. +  .++|++|++++|.+. .+|..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4566666666666652 2  246777777777776 45566777777777777777777555556777777777777777


Q ss_pred             ccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC
Q 042271          115 DLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH  164 (517)
Q Consensus       115 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (517)
                      .+++..+.+|..+++|++|++++|.+.. ++...+..+++|++|++++|+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCC
Confidence            7776666677777777777777777753 555456777777777777776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=8.4e-13  Score=126.91  Aligned_cols=134  Identities=13%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             cchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcC
Q 042271          341 IPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN  420 (517)
Q Consensus       341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  420 (517)
                      +....|.+|+.|+.+.+..... .....+|.+++.|+.+.+.. .+..+...+|.+|.+|+.+.+.++ ++.....+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            3344555566666666654322 23344555666666666642 233344556666666666666543 33344456666


Q ss_pred             CCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCc
Q 042271          421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK  480 (517)
Q Consensus       421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  480 (517)
                      |.+|+.+.+..+ +..+...+|.+|.+|+.+++.++....  ...+.+..|+.+.+..+.
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            666666666543 333445566666666666666654321  122335566666655443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=3.5e-15  Score=154.07  Aligned_cols=187  Identities=22%  Similarity=0.265  Sum_probs=80.5

Q ss_pred             CCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc--------ccchhHHhhcCCCcEEEccCCcccccccccccC
Q 042271          301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG--------EIPERMAARCFSLEILALSNNSLQGHIFSEKFN  372 (517)
Q Consensus       301 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  372 (517)
                      +.++.|++.++.+... +..+     ++.++++.+.+.+        .++...+..++.|+.|++++|.+.. ++..+..
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred             CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence            4577777777776632 2222     2333333333221        1233444556666666666666653 2333445


Q ss_pred             CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEE
Q 042271          373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD  452 (517)
Q Consensus       373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  452 (517)
                      +++|++|+|++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..|..+++|+.|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            666666666666666 45555666666666666666666 55666666666666666666665 4455566666666666


Q ss_pred             ccCCccccCCCCCCCc--ccccEEEccCCcCCccchhhhcCCCcccEEECCCC
Q 042271          453 LSNNSIFRTLPSCFSP--ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN  503 (517)
Q Consensus       453 l~~n~l~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n  503 (517)
                      |++|++++..+..+..  .....+++++|.+++.+|.      .|+.|+++.|
T Consensus       323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            6666665554444331  1122345666666555443      4455555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.1e-13  Score=117.11  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=83.2

Q ss_pred             ceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccc
Q 042271           34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN  113 (517)
Q Consensus        34 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~  113 (517)
                      .+.++++++.+..++...   .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            355666666666655422   25677777777777655555666777777777777777644444566777777777777


Q ss_pred             cccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCC
Q 042271          114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF  165 (517)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  165 (517)
                      |.+++..+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|++
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence            77775555556677777777777777753 4544456677777777777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4.9e-14  Score=119.01  Aligned_cols=132  Identities=18%  Similarity=0.119  Sum_probs=108.9

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcc-cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLV-HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM  106 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  106 (517)
                      +..+++|++|+++++.+..++.  +..+. +|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            5678899999999999888754  55555 999999999999854  678899999999999999985433445899999


Q ss_pred             cEEEccccccCCcccc--cccCCCCCcEEeccCCccccccCCC---cccCCCCCceeecccCCC
Q 042271          107 RELHIDNNDLRGSLPL--CLANLTSLRVLDVSDNQLTQNISSS---PLMHLTSIEELILSNNHF  165 (517)
Q Consensus       107 ~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~  165 (517)
                      ++|++++|.++ .+|.  .+..+++|++|++++|.+.. .+..   .+..+++|+.|++++|..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999997 4565  78899999999999999964 5542   377899999999998863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.6e-14  Score=120.68  Aligned_cols=130  Identities=22%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             CCCCCcEEEccCcccccccchhhhhcc-cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccE
Q 042271          372 NLTNLMTLQLDGNKFTGEILESLSKCY-LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI  450 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  450 (517)
                      .+++|++|++++|.+... +. +..+. +|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344444555554444421 21 22222 455555555554422  34444555555555555554332233345555555


Q ss_pred             EEccCCccccCCC--CCCCcccccEEEccCCcCCccchh---hhcCCCcccEEECCCCcC
Q 042271          451 LDLSNNSIFRTLP--SCFSPASIEQLHLSKNKIEGRLES---IIHDSPHLVTLDLSCNSL  505 (517)
Q Consensus       451 L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~---~l~~~~~L~~l~l~~n~~  505 (517)
                      |++++|+++....  ....+++|+.|++++|.++.....   .+..+++|+.||+++|.+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5555555533222  111245555555555555433222   355556666666655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.3e-15  Score=131.41  Aligned_cols=148  Identities=22%  Similarity=0.234  Sum_probs=114.4

Q ss_pred             CCcCceeeCCCccccccccchh------hccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCcccccc
Q 042271            4 FKNLEHLDMGEVQVDVNTSFLQ------IVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLA   77 (517)
Q Consensus         4 l~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~   77 (517)
                      ...++.++++.+  .+.+..+.      . +..+++|++|++++|.+..++  .+..+++|++|++++|.+. .+|..+.
T Consensus        17 ~~~l~~l~l~~~--~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           17 RKSVVATEAEKV--ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             TTCCCCTTCSEE--ECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             cccccCcchhee--EeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhh
Confidence            456777777777  55555443      4 788889999999988888876  6888999999999999888 5677777


Q ss_pred             CCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccc-ccccCCCCCcEEeccCCccccccCC---------C
Q 042271           78 NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQNISS---------S  147 (517)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~---------~  147 (517)
                      .+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.         .
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            78889999999998884 44 68888999999999998884332 4688889999999999988654332         1


Q ss_pred             cccCCCCCceee
Q 042271          148 PLMHLTSIEELI  159 (517)
Q Consensus       148 ~l~~l~~L~~L~  159 (517)
                      .+..+++|++|+
T Consensus       169 ~~~~l~~L~~Ld  180 (198)
T 1ds9_A          169 VVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHCSSCSEEC
T ss_pred             HHHhCCCcEEEC
Confidence            266788888887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.8e-13  Score=113.32  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccC
Q 042271          400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSK  478 (517)
Q Consensus       400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~  478 (517)
                      .+.+++++|.+. .+|..+  .++++.|++++|.+.+..+..|.++++|++|++++|++++..+..+. +++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            566777777776 344433  26777777777777766667777777777888877777766666543 67788888888


Q ss_pred             CcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       479 n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      |.+++..+..|..+++|++|+|++|++++.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88777777777788888888888888876664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.9e-14  Score=124.18  Aligned_cols=152  Identities=23%  Similarity=0.283  Sum_probs=97.4

Q ss_pred             cCCCcEEEccCCcCCCCCch------hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC
Q 042271          300 LPGLMDLNLSRNAFNGSIPS------SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL  373 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~------~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  373 (517)
                      .+.++.++++++.+.+..+.      .+..+++|++|++++|.+. .++  .+..+++|+.|++++|.++. ++..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCccc-ccchhhcC
Confidence            34555555555555444333      6777777777777777776 355  44557777777777777663 33344456


Q ss_pred             CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccc----------cc
Q 042271          374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPI----------EF  442 (517)
Q Consensus       374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~  442 (517)
                      ++|++|++++|.+.+ .+ .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..|.          .+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            777777777777764 22 57777788888888887774222 3577777788888887777654333          26


Q ss_pred             cCCCCccEEEccCCccc
Q 042271          443 CQLNSLKILDLSNNSIF  459 (517)
Q Consensus       443 ~~~~~L~~L~l~~n~l~  459 (517)
                      ..+++|+.|+  ++.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6677777776  45553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=1.3e-14  Score=137.49  Aligned_cols=161  Identities=21%  Similarity=0.203  Sum_probs=81.7

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcC-----CCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc----
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK----  370 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----  370 (517)
                      .+.|+.|++++|.++......+...     ++|++|++++|.+.+.....+...+++|+.|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3456666666666553332232222     5666666666666544333444445566666666666654332222    


Q ss_pred             -cCCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCccccc----
Q 042271          371 -FNLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGP----  437 (517)
Q Consensus       371 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----  437 (517)
                       ...++|++|++++|.+++..    ...+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             13456666666666664322    22234455666666666665432    133344445555555555555432    


Q ss_pred             ccccccCCCCccEEEccCCcccc
Q 042271          438 IPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       438 ~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      +...+...++|++|+|++|.+++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            12223334555555555555533

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.1e-12  Score=110.03  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             CeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCC
Q 042271          401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKN  479 (517)
Q Consensus       401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n  479 (517)
                      +.++++++.+. .+|..+.  ++|+.|++++|.+.+..+..|.++++|++|+|++|++++..+..+. +++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666655 4443332  5666666666666655566666666677777777766665555443 667777777777


Q ss_pred             cCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271          480 KIEGRLESIIHDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       480 ~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~  509 (517)
                      .+++.++..|..+++|++|+|++|++.+.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            776666666777777777777777776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=3.4e-14  Score=134.48  Aligned_cols=183  Identities=17%  Similarity=0.166  Sum_probs=127.9

Q ss_pred             CCCCcEEeccccccccccchhHHh----hcCCCcEEEccCCccccccccccc-CCCCCcEEEccCcccccccchhhh---
Q 042271          324 MKMLERVDISYNQLTGEIPERMAA----RCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLS---  395 (517)
Q Consensus       324 l~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---  395 (517)
                      ++.|++|++++|.+.+.....+..    .+++|+.|++++|.+++.....+. .+++|++|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            567999999999987433322222    236899999999988754433332 467899999999998765444442   


Q ss_pred             --hcccCCeEEecCCCCCC----ccchhhcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCCC
Q 042271          396 --KCYLLEGLYLSDNHLTG----EIPRWLGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPSC  465 (517)
Q Consensus       396 --~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~  465 (517)
                        ..++|++|++++|.+..    .++..+..+++|++|++++|.+.+.    +...+...++|++|+|++|.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              35789999999998864    2445567788999999999988653    2456677789999999999886654333


Q ss_pred             CC-----cccccEEEccCCcCCccchhhhcCCC--c---ccEEE--CCCCcCC
Q 042271          466 FS-----PASIEQLHLSKNKIEGRLESIIHDSP--H---LVTLD--LSCNSLH  506 (517)
Q Consensus       466 ~~-----~~~L~~L~l~~n~~~~~~~~~l~~~~--~---L~~l~--l~~n~~~  506 (517)
                      +.     +++|++|++++|.+++.....+....  .   |+.+.  +.+|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            32     58899999999999876655555442  2   66776  6666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=2.5e-12  Score=107.53  Aligned_cols=103  Identities=19%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN  114 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  114 (517)
                      ++++++++.+..++.. +  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3444444444444431 1  144444555554444444444444444444444444444333333344444444444444


Q ss_pred             ccCCcccccccCCCCCcEEeccCCcc
Q 042271          115 DLRGSLPLCLANLTSLRVLDVSDNQL  140 (517)
Q Consensus       115 ~~~~~~~~~~~~l~~L~~L~L~~~~~  140 (517)
                      .+++..+..|..+++|++|++++|.+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            44433333344444444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.35  E-value=7.2e-11  Score=112.89  Aligned_cols=146  Identities=10%  Similarity=0.125  Sum_probs=85.6

Q ss_pred             cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271          272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS  351 (517)
Q Consensus       272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~  351 (517)
                      +..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +. .++...|.+|++
T Consensus       213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            344455555555433 11 223333333566666666554 33344456666777777766543 33 555666667777


Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCC
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL  424 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  424 (517)
                      |+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.++ ++.....+|.++..+
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            777777766666566667777777777777543 44355667777777777777554 443445566666433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=4e-12  Score=106.61  Aligned_cols=103  Identities=21%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN  114 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  114 (517)
                      +.++++++.+..++. .+  .++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            344555444444443 11  144555555555554444444455555555555555444322223344444555555555


Q ss_pred             ccCCcccccccCCCCCcEEeccCCcc
Q 042271          115 DLRGSLPLCLANLTSLRVLDVSDNQL  140 (517)
Q Consensus       115 ~~~~~~~~~~~~l~~L~~L~L~~~~~  140 (517)
                      .+++..+..|..+++|++|++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            44433333344444444444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.26  E-value=6.2e-10  Score=106.39  Aligned_cols=145  Identities=19%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             hhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccC
Q 042271          321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLL  400 (517)
Q Consensus       321 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  400 (517)
                      +..+.+|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|++|
T Consensus       213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            333444444444332 11 233334444555555555443 33333344555555666555433 222344556666666


Q ss_pred             CeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccc
Q 042271          401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI  471 (517)
Q Consensus       401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L  471 (517)
                      +.+.+.++.+......+|.+|.+|+.+.+.++ +..+...+|.+|.+|+.+.+..+ ++.+...+|...++
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            66666666555444556666666666666543 33344456667777777777543 44455555553333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.2e-10  Score=109.98  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             EEEccCc-ccccccchhhhhcccCCeEEecC-CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccC
Q 042271          378 TLQLDGN-KFTGEILESLSKCYLLEGLYLSD-NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN  455 (517)
Q Consensus       378 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  455 (517)
                      .++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 676 4555 77888888888886 888866667788888888888888888877777888888888888888


Q ss_pred             CccccCCCCCCCcccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCCCc
Q 042271          456 NSIFRTLPSCFSPASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSIPN  511 (517)
Q Consensus       456 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~~~  511 (517)
                      |++++..+..+....|+.|++.+|.+...- ...|..+.......+..+.+++.-|+
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            888777766666545888888888876331 12232222222223344555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=2.5e-10  Score=107.70  Aligned_cols=104  Identities=20%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             EEEccCC-cccccccccccCCCCCcEEEccC-cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271          354 ILALSNN-SLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN  431 (517)
Q Consensus       354 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  431 (517)
                      .++++++ .++. ++. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.+..+..|.++++|+.|++++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 6765 344 77788888888885 888876667788888888888888888877777888888888888888


Q ss_pred             CcccccccccccCCCCccEEEccCCcccc
Q 042271          432 NNLEGPIPIEFCQLNSLKILDLSNNSIFR  460 (517)
Q Consensus       432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  460 (517)
                      |++.+..+..|..++ |+.|+|.+|++..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888865555565554 8888888888754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=6e-10  Score=104.39  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             HHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh--hcccCCeEEecCC--C-CCC----ccc
Q 042271          345 MAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDN--H-LTG----EIP  415 (517)
Q Consensus       345 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~-~~~----~~~  415 (517)
                      +...+|+|+.|.+.+|.-.. . ..+ ..++|+.|++..|.+.......+.  .+|+|+.|+|+.+  . ..+    .+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l~-l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS-I-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB-C-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCce-e-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            34456667777766652111 1 112 256777777776666543333333  4677777776421  1 110    011


Q ss_pred             hhh--cCCCCCcEEECCCCccccccccccc---CCCCccEEEccCCccccCCCCCC-----CcccccEEEccCCcCCccc
Q 042271          416 RWL--GNLSALEDIIMPNNNLEGPIPIEFC---QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHLSKNKIEGRL  485 (517)
Q Consensus       416 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~  485 (517)
                      ..+  ..+++|+.|.+.+|.+.+..+..+.   .+++|++|+|+.|.+++.....+     .+++|+.|++++|.++...
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            122  2467777777777776543222222   46778888887777755322111     1577888888888777655


Q ss_pred             hhhhcC-CCcccEEECCCCc
Q 042271          486 ESIIHD-SPHLVTLDLSCNS  504 (517)
Q Consensus       486 ~~~l~~-~~~L~~l~l~~n~  504 (517)
                      ...+.. +  ...++++++.
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            555553 2  3557777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=2.9e-09  Score=99.76  Aligned_cols=156  Identities=20%  Similarity=0.111  Sum_probs=87.8

Q ss_pred             hccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHH-hhcCCCcEEEccCC--ccccc-----cccc
Q 042271          298 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNN--SLQGH-----IFSE  369 (517)
Q Consensus       298 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~n--~~~~~-----~~~~  369 (517)
                      ..+|+|+.|.++++.-. ..+. + .+++|++|++..|.+.......+. ..+|+|+.|+++.+  ...+.     +...
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            33778888888777311 1222 3 367888888887776533332222 25778888887531  11110     0011


Q ss_pred             c--cCCCCCcEEEccCcccccccchhhh---hcccCCeEEecCCCCCCcc----chhhcCCCCCcEEECCCCcccccccc
Q 042271          370 K--FNLTNLMTLQLDGNKFTGEILESLS---KCYLLEGLYLSDNHLTGEI----PRWLGNLSALEDIIMPNNNLEGPIPI  440 (517)
Q Consensus       370 ~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~  440 (517)
                      +  ..+|+|+.|++.+|.+.+.....+.   .+++|++|+++.|.+.+..    +..+..+++|+.|++++|.+.+....
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            1  2467888888887777543333332   3667888888777776432    22334467777777777766544333


Q ss_pred             cccCCCCccEEEccCCc
Q 042271          441 EFCQLNSLKILDLSNNS  457 (517)
Q Consensus       441 ~~~~~~~L~~L~l~~n~  457 (517)
                      .+...- ...+++++++
T Consensus       326 ~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC-CSEEECCSBC
T ss_pred             HHHHHc-CCEEEecCCc
Confidence            333211 3456776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=3.2e-09  Score=89.72  Aligned_cols=118  Identities=13%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             cccCCCCCcEEEccCc-cccccc----chhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271          369 EKFNLTNLMTLQLDGN-KFTGEI----LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC  443 (517)
Q Consensus       369 ~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  443 (517)
                      .+...+.|++|++++| .+.+..    ...+...++|++|++++|.+.+....                    .+...+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~L~   90 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEMLK   90 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHHHH
Confidence            3445666666666666 554322    22233345566666666655432111                    1122233


Q ss_pred             CCCCccEEEccCCccccCCCCCC-----CcccccEEEc--cCCcCCcc----chhhhcCCCcccEEECCCCcCC
Q 042271          444 QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHL--SKNKIEGR----LESIIHDSPHLVTLDLSCNSLH  506 (517)
Q Consensus       444 ~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~l~l~~n~~~  506 (517)
                      ..++|++|+|++|.+++.....+     ..++|++|++  ++|.++..    +...+...++|++|++++|.+.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34455555555555533221111     1345666666  55666543    3445555667777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=6.9e-08  Score=81.47  Aligned_cols=45  Identities=7%  Similarity=-0.014  Sum_probs=21.4

Q ss_pred             hhhhcCCCCcEEecccc-ccccccchhH---HhhcCCCcEEEccCCccc
Q 042271          319 SSFADMKMLERVDISYN-QLTGEIPERM---AARCFSLEILALSNNSLQ  363 (517)
Q Consensus       319 ~~~~~l~~L~~L~l~~~-~i~~~~~~~~---~~~~~~L~~L~l~~n~~~  363 (517)
                      ..+...+.|++|++++| .+.+.....+   ....++|++|++++|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            34455666666666666 5553322211   112334445555544443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=9.7e-08  Score=78.21  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             CCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCC----CCCcEEEccCcc-cccccchhhhhccc
Q 042271          326 MLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNL----TNLMTLQLDGNK-FTGEILESLSKCYL  399 (517)
Q Consensus       326 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~  399 (517)
                      .|++||+++|.+++.....+ .+|++|+.|++++|. +++.....+..+    ++|++|++++|. +++.....+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35555555555443322222 334445555554442 333333333321    234444444442 44333333444444


Q ss_pred             CCeEEecCC
Q 042271          400 LEGLYLSDN  408 (517)
Q Consensus       400 L~~L~l~~~  408 (517)
                      |+.|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=6.6e-08  Score=79.22  Aligned_cols=83  Identities=13%  Similarity=0.072  Sum_probs=49.0

Q ss_pred             cCcEEEecCCcccCCccccccCCCCCcEEEccCCc-cCCCCCcchhcc----ccCcEEEccccc-cCCcccccccCCCCC
Q 042271           57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE-LTGNISPGLCEL----VLMRELHIDNND-LRGSLPLCLANLTSL  130 (517)
Q Consensus        57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~L~~~~-~~~~~~~~~~~l~~L  130 (517)
                      .|+.||+++|.+++.-...+..|++|++|+|++|. +++.....++.+    ++|++|+|++|. +|+.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666776666655444555666677777776663 554333334432    356677776663 665444555666666


Q ss_pred             cEEeccCCc
Q 042271          131 RVLDVSDNQ  139 (517)
Q Consensus       131 ~~L~L~~~~  139 (517)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=1.3e-07  Score=83.81  Aligned_cols=106  Identities=20%  Similarity=0.238  Sum_probs=73.7

Q ss_pred             cCCCCcceE--EeccccccCCcc---hhhhhhcccCcEEEecCCcccC--CccccccCCCCCcEEEccCCccCCCCCcch
Q 042271           28 GESKPSLKF--LSLINSSKNTIL---DQGLRQLVHLQELYIGGYDLRG--SLPWCLANMTSLQVLYASSNELTGNISPGL  100 (517)
Q Consensus        28 ~~~~~~L~~--L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  100 (517)
                      +...+.|+.  ++++.|....+.   .....++++|++|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            444555665  555555333222   1123568899999999999886  3346677899999999999988853  345


Q ss_pred             hccc--cCcEEEccccccCCccc-------ccccCCCCCcEEec
Q 042271          101 CELV--LMRELHIDNNDLRGSLP-------LCLANLTSLRVLDV  135 (517)
Q Consensus       101 ~~l~--~L~~L~L~~~~~~~~~~-------~~~~~l~~L~~L~L  135 (517)
                      ..+.  +|++|+|++|.+.+..|       ..+..+++|+.||-
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            5555  89999999999876444       24678899999863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=1.2e-07  Score=84.04  Aligned_cols=109  Identities=19%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             hhhhcccCcE--EEecCCccc---CCccccccCCCCCcEEEccCCccCC--CCCcchhccccCcEEEccccccCCccccc
Q 042271           51 GLRQLVHLQE--LYIGGYDLR---GSLPWCLANMTSLQVLYASSNELTG--NISPGLCELVLMRELHIDNNDLRGSLPLC  123 (517)
Q Consensus        51 ~l~~l~~L~~--L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  123 (517)
                      .|...+.|+.  ++++.|...   ..+.....++++|+.|+|++|.+++  .++..+..+++|++|+|++|.+++.  ..
T Consensus       136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~  213 (267)
T 3rw6_A          136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE  213 (267)
T ss_dssp             TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred             HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence            3555666666  677777443   1222233678999999999999986  4456677999999999999999854  33


Q ss_pred             ccCCC--CCcEEeccCCccccccCC------CcccCCCCCceeecc
Q 042271          124 LANLT--SLRVLDVSDNQLTQNISS------SPLMHLTSIEELILS  161 (517)
Q Consensus       124 ~~~l~--~L~~L~L~~~~~~~~~~~------~~l~~l~~L~~L~l~  161 (517)
                      +..++  +|++|++++|.+.+.++.      ..+..+|+|+.|+-.
T Consensus       214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            44444  999999999999764442      136678999999843

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.79  E-value=8e-06  Score=68.22  Aligned_cols=87  Identities=16%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             hcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCC---cCCc--
Q 042271          418 LGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKN---KIEG--  483 (517)
Q Consensus       418 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n---~~~~--  483 (517)
                      +..-..|+.|++++|.+.+.    +...+..-..|++|+|+.|.+++....++.     ..+|++|++++|   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            33334444444444444321    122333445566666666665443322221     455666666543   3332  


Q ss_pred             --cchhhhcCCCcccEEECCCCc
Q 042271          484 --RLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       484 --~~~~~l~~~~~L~~l~l~~n~  504 (517)
                        .+.+++..-+.|+.|+++.|.
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCCC
Confidence              244566666777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.42  E-value=0.00025  Score=55.25  Aligned_cols=59  Identities=22%  Similarity=0.400  Sum_probs=39.9

Q ss_pred             EEEccCCccc-cCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271          450 ILDLSNNSIF-RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI  509 (517)
Q Consensus       450 ~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~  509 (517)
                      .++.+++.++ ...|..+ +.+|++|+|++|.++.+.+..|..+++|++|+|++|++.+.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            5666666664 1233222 466777888888877777777777788888888888776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=0.00015  Score=60.62  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             hcCCCCCcEEECCCC-cccc----cccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCCcCCcc---
Q 042271          418 LGNLSALEDIIMPNN-NLEG----PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKNKIEGR---  484 (517)
Q Consensus       418 ~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~~~~~---  484 (517)
                      +..-+.|++|+++++ .+.+    .+..++..-..|++|+|++|++.+....+++     ..+|++|+|++|.|+..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344455666666553 4432    2445677778999999999999877666655     68999999999999864   


Q ss_pred             -chhhhcCCCcccEEECCCC
Q 042271          485 -LESIIHDSPHLVTLDLSCN  503 (517)
Q Consensus       485 -~~~~l~~~~~L~~l~l~~n  503 (517)
                       +.+++..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             5567888889999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.22  E-value=0.0084  Score=46.53  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             cCcEEEccccccCCcccccccCCCCCcEEeccCCcc
Q 042271          105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQL  140 (517)
Q Consensus       105 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~  140 (517)
                      +|++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555543334444555555555555443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=81.06  E-value=1.5  Score=31.70  Aligned_cols=42  Identities=14%  Similarity=0.026  Sum_probs=20.7

Q ss_pred             ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccC
Q 042271          413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN  455 (517)
Q Consensus       413 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  455 (517)
                      ....+|.+|.+|+.+.+..+-.. +...+|.+|.+|+.+.+..
T Consensus        11 I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           11 MDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred             ecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence            33344555555555555443222 3344555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.7 bits (216), Expect = 2e-19
 Identities = 69/390 (17%), Positives = 142/390 (36%), Gaps = 35/390 (8%)

Query: 77  ANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVS 136
             +            +T  +S    +L  +  L  D   ++ S+   +  L +L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFS 74

Query: 137 DNQLTQNISSSPLMHLTSIEELILSNNHFFQSP----------ISLEPLFNLSKRKTFDS 186
           +NQLT     +PL +LT + +++++NN                ++L            + 
Sbjct: 75  NNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 187 EICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW 246
                 E   N+++    L+ ++    +  G     L    +L   +   ++ +      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 247 LVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
           ++    NLE L+  +N +      P+     L  L ++ N  +    +     L  L DL
Sbjct: 192 VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDL 246

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI 366
           +L+ N  +   P   + +  L  + +  NQ++   P           +  L  N  Q   
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPL-----AGLTALTNLELNENQLED 299

Query: 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
            S   NL NL  L L  N  +   +  +S    L+ L+ ++N ++      L NL+ +  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNN 456
           +   +N +    P     L  +  L L++ 
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 72/391 (18%), Positives = 129/391 (32%), Gaps = 60/391 (15%)

Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSK 180
            +   +L  +  L      +    S   + +L ++ ++  SNN        + PL NL+K
Sbjct: 37  TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQL----TDITPLKNLTK 89

Query: 181 RKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLS 240
                                        L   +        +    +L N     L  +
Sbjct: 90  -----------------------------LVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 241 GKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYL 300
                  ++N  NL RL L+ N++     +   +                   V     L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL---------QQLSFGNQVTDLKPL 171

Query: 301 PGLMDLNLSRNAFNGSIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
             L  L     + N     S  A +  LE +  + NQ++   P  +     +L+ L+L+ 
Sbjct: 172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNG 228

Query: 360 NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG 419
           N L+        +LTNL  L L  N+ +      LS    L  L L  N ++   P    
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLA-- 282

Query: 420 NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKN 479
            L+AL ++ +  N            L +L  L L  N+I   +    S   +++L  + N
Sbjct: 283 GLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNI-SDISPVSSLTKLQRLFFANN 339

Query: 480 KIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
           K+     S + +  ++  L    N +    P
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 28/153 (18%)

Query: 32  PSLKFLSLINSSKNTILDQG-LRQLVHLQELYIGGYDLRGSLP----------------- 73
            SL  L+ ++ + N I +   L  L  L EL +G   +    P                 
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 74  ---WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
                ++N+ +L  L    N ++      +  L  ++ L   NN +       LANLT++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
             L    NQ++     +PL +LT I +L L++ 
Sbjct: 354 NWLSAGHNQIS---DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 45/239 (18%)

Query: 74  WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVL 133
             LA +T+L+ L A++N+++     G+     + EL ++ N L+      LA+LT+L  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 134 DVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETE 193
           D+++NQ++   + +PL  LT + EL L  N       ++ PL  L+     +       +
Sbjct: 247 DLANNQIS---NLAPLSGLTKLTELKLGANQIS----NISPLAGLTALTNLELNENQLED 299

Query: 194 SHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNAN 253
                                          +  +L    L   N+S   P   V +   
Sbjct: 300 ISPI--------------------------SNLKNLTYLTLYFNNISDISP---VSSLTK 330

Query: 254 LERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNA 312
           L+RL  A+N +       + +   +  L   +N      P+     L  +  L L+  A
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 52/354 (14%), Positives = 102/354 (28%), Gaps = 41/354 (11%)

Query: 33  SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
            +  L        +I   G+  L +L ++      L    P  L N+T L  +  ++N++
Sbjct: 45  QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 93  TGNI------SPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISS 146
                     +     L   +   ID      +L     +  ++  +       +    S
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 147 SPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLT 206
                        L+         +     ++  + T    + A      +         
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 220

Query: 207 FISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG 266
              LS   +       L    +L + DL++  +S   P   +     L  L L  N +  
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN 277

Query: 267 S--------------------FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306
                                   PI + + L  L +  N      PV     L  L  L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRL 334

Query: 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
             + N  +    SS A++  +  +   +NQ++   P    A    +  L L++ 
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 26/262 (9%)

Query: 229 LKNADLSHLNLSGKFP-NWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNF 287
           + N DLS LNL   +P    + N   L  L +   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 288 FRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAA 347
                  +  + +  L+ L+ S NA +G++P S + +  L  +    N+++G IP+   +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY--------- 398
                  + +S N L G I     NL                 +   S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 399 -------------LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 445
                         L GL L +N + G +P+ L  L  L  + +  NNL G IP +   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 446 NSLKILDLSNNSIFRT--LPSC 465
               +   +NN       LP+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 9/258 (3%)

Query: 107 RELHIDNNDLRGSLPL--CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164
             L +   +L    P+   LANL  L  L +             +  LT +  L +++ +
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 165 FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLY 224
              +              T D    A + +   S++    L  I+  G    G  P    
Sbjct: 113 VSGAIPDFLSQIK--TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 225 HQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVS 284
               L  +     N   +    +    ANL    +  +         +       T  + 
Sbjct: 171 SFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 285 NNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPER 344
                    +        L  L+L  N   G++P     +K L  +++S+N L GEIP+ 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286

Query: 345 MAARCFSLEILALSNNSL 362
                   ++ A +NN  
Sbjct: 287 -GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 5/241 (2%)

Query: 274 SHQKLATLDVSNNFFRG--HIPVEIGTYLPGLMDLNLSRNA-FNGSIPSSFADMKMLERV 330
              ++  LD+S         IP  +   LP L  L +       G IP + A +  L  +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI 390
            I++            ++  +L  L  S N+L G +     +L NL+ +  DGN+ +G I
Sbjct: 107 YITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
            +S      L        +              L  + +  N LEG   + F    + + 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
           + L+ NS+   L       ++  L L  N+I G L   +     L +L++S N+L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 511 N 511
            
Sbjct: 286 Q 286

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 2/217 (0%)

Query: 303 LMDLNLSRNAFNG--SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
           + +L+LS         IPSS A++  L  + I              A+   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 361 SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
           ++ G I      +  L+TL    N  +G +  S+S    L G+    N ++G IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
            S L   +  + N             +L  +DLS N +       F      Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 481 IEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517
                   +  S +L  LDL  N ++G++P  + +L 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 49/274 (17%), Positives = 82/274 (29%), Gaps = 8/274 (2%)

Query: 144 ISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSK-RKTFDSEICAETESHYNSLTPK 202
           +          +  L LS  +  +       L NL      +   I         ++   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 203 FQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADN 262
            QL ++ ++     G  P FL     L   D S+  LSG  P  +  +  NL  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGN 159

Query: 263 SLFGSFWMPIHSHQKLAT-LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 321
            + G+      S  KL T + +S N   G IP          +DL+ +    + S+    
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQL 381
                   +  +                       L NN + G +      L  L +L +
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD----LRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 382 DGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIP 415
             N   GEI          +    ++N      P
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164
            +  L + NN + G+LP  L  L  L  L+VS N L   I      +L   +    +NN 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

Query: 165 F 165
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 74  WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVL 133
             +    +L  L   +N + G +  GL +L  +  L++  N+L G +P    NL    V 
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296

Query: 134 DVSDNQL 140
             ++N+ 
Sbjct: 297 AYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 68  LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPL 122
           + G+LP  L  +  L  L  S N L G I P    L         NN      PL
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 48/257 (18%), Positives = 82/257 (31%), Gaps = 34/257 (13%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
            A LD+ NN        +    L  L  L L  N  +   P +FA +  LER+ +S NQL
Sbjct: 33  TALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEK-----------------------FNLT 374
             E+PE+M      L +       ++  +F+                           + 
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
            L  +++     T            L  L+L  N +T      L  L+ L  + +  N++
Sbjct: 151 KLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG------RLESI 488
                        L+ L L+NN + +          I+ ++L  N I             
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 489 IHDSPHLVTLDLSCNSL 505
                    + L  N +
Sbjct: 268 NTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 6/192 (3%)

Query: 316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTN 375
            +P           +D+  N++T  I +       +L  L L NN +          L  
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 376 LMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435
           L  L L  N+      +       L         +   +   L  +  + ++        
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHL 495
           G     F  +  L  + +++ +I  T+P    P S+ +LHL  NKI     + +    +L
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNI-TTIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNL 197

Query: 496 VTLDLSCNSLHG 507
             L LS NS+  
Sbjct: 198 AKLGLSFNSISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 44/279 (15%), Positives = 84/279 (30%), Gaps = 16/279 (5%)

Query: 80  TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139
               +L   +N++T         L  +  L + NN +    P   A L  L  L +S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSL 199
           L       P     +++EL +  N   +   S+    N        +     +     + 
Sbjct: 91  LK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 200 TPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLL 259
               +L++I ++                 L    L    ++      L +   NL +L L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASL-KGLNNLAKLGL 202

Query: 260 ADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 319
           + NS+       + +   L  L ++NN                +  + L  N  +    +
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSN 260

Query: 320 SFAD------MKMLERVDISYNQLTGEIPERMAARCFSL 352
            F              V +  N +     +    RC  +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 7/188 (3%)

Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE 389
           V  S   L  ++P+ +        +L L NN +      +  NL NL TL L  NK +  
Sbjct: 15  VQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 390 ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK 449
              + +    LE LYLS N L     +    L  L         +   +     Q+  ++
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 450 ILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509
           +      S      +      +  + ++   I    + +    P L  L L  N +    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

Query: 510 PNQIGRLP 517
              +  L 
Sbjct: 188 AASLKGLN 195

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 42/262 (16%), Positives = 92/262 (35%), Gaps = 17/262 (6%)

Query: 32  PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE 91
           P    L L N+    I D   + L +L  L +    +    P   A +  L+ LY S N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 92  LTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ-NISSSPLM 150
           L   +   + +   ++EL +  N++          L  + V+++  N L    I +    
Sbjct: 91  LK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 151 HLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISL 210
            +  +  + +++ +    P  L              +    T+    SL     L  + L
Sbjct: 148 GMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 211 SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FG 266
           S           L +   L+   L++  L          ++  ++ + L +N++      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSN 260

Query: 267 SFWMPIHSHQ--KLATLDVSNN 286
            F  P ++ +    + + + +N
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 52/289 (17%), Positives = 91/289 (31%), Gaps = 20/289 (6%)

Query: 129 SLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEI 188
            LRV+  SD  L +     P         L L NN    + I      NL    T     
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILIN 64

Query: 189 CAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLV 248
              ++    +  P  +L  + LS         K      +L+  +     +     N L 
Sbjct: 65  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL- 123

Query: 249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308
            N   +  L        G         +KL+ + +++      IP  +    P L +L+L
Sbjct: 124 -NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHL 178

Query: 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS 368
             N       +S   +  L ++ +S+N ++      +A     L  L L+NN L      
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLVKVPGG 237

Query: 369 EKFNLTNLMTLQLDGNKFTG------EILESLSKCYLLEGLYLSDNHLT 411
              +   +  + L  N  +             +K     G+ L  N + 
Sbjct: 238 -LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 51/257 (19%), Positives = 84/257 (32%), Gaps = 5/257 (1%)

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
              +   L    +S            NL  L L  N L             L  LD+S+N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA 346
                +       L  L  L+L R       P  F  +  L+ + +  N L   +P+   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 347 ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
               +L  L L  N +          L +L  L L  N+       +      L  LYL 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466
            N+L+      L  L AL+ + + +N               L+    S++ +  +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 467 SPASIEQLHLSKNKIEG 483
           +   +    L+ N ++G
Sbjct: 269 AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 42/223 (18%), Positives = 64/223 (28%), Gaps = 4/223 (1%)

Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
            +PV I         + L  N  +    +SF   + L  + +  N L             
Sbjct: 25  AVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
             ++    N  L+    +    L  L TL LD                 L+ LYL DN L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS 470
                    +L  L  + +  N +       F  L+SL  L L  N +    P  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 471 IEQLHL-SKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512
                    N +       +     L  L L+ N        +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 5e-11
 Identities = 47/272 (17%), Positives = 80/272 (29%), Gaps = 10/272 (3%)

Query: 142 QNISSSPLMHLTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAETESHYNSLT 200
           Q + + P+    + + + L  N        S     NL+      + +            
Sbjct: 21  QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTG 78

Query: 201 PKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLA 260
                              P   +    L    L    L    P       A L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQ 137

Query: 261 DNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 320
           DN+L             L  L +  N     +P      L  L  L L +N      P +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQ 380
           F D+  L  + +  N L+  +P    A   +L+ L L++N       +       L   +
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFR 254

Query: 381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
              ++    + + L+   L     L+ N L G
Sbjct: 255 GSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 10/261 (3%)

Query: 80  TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139
            + Q ++   N ++   +        +  L + +N L          L  L  LD+SDN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQSPIS-LEPLFNLSKRKTFDSEICAETESHYNS 198
             +++  +    L  +  L L      +        L  L      D+ +        ++
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---ALPDDT 148

Query: 199 LTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLL 258
                 LT + L G        +     H L    L    ++   P+   +    +   L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 259 LADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 318
              N+L       +   + L  L +++N +              L     S +    S+P
Sbjct: 209 F-ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLP 265

Query: 319 SSFADMKMLERVDISYNQLTG 339
              A   +     ++ N L G
Sbjct: 266 QRLAGRDLK---RLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 8/202 (3%)

Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
              ++         +P ++         L+LS N       ++      L ++++   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKC 397
              + +        +      +++    +      L  L  L +  N+ T   L +L   
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 398 YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS 457
             L+ LYL  N L    P  L     LE + + NNNL          L +L  L L  NS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 458 IFRTLPSCFSPASIEQLHLSKN 479
           ++      F    +    L  N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 34/207 (16%), Positives = 54/207 (26%), Gaps = 10/207 (4%)

Query: 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNF 287
                +    NL+   P  L     +   L L++N L+      +  + +L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 288 FRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAA 347
                       L  L       +                  V          +P     
Sbjct: 67  LTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD 407
               L+ L L  N L+            L  L L  N  T      L+    L+ L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 408 NHLTGEIPRWLGNLSALEDIIMPNNNL 434
           N L   IP+       L    +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 11/212 (5%)

Query: 78  NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSD 137
            + S   +      LT  + P L +      LH+  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 138 NQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYN 197
            +LT+      L  L +++              +L  L  L       + +         
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 198 SLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERL 257
            L   +              T P  L              N   + P  L+    NL+ L
Sbjct: 125 ELQELYLKGNELK-------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 258 LLADNSLFGSFWMPIHSHQKLATLDVSNNFFR 289
           LL +NSL+ +          L    +  N + 
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 441 EFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
           E  ++ S   ++    ++   LP    P     LHLS+N +     + +     L  L+L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 501 SCNSLH 506
               L 
Sbjct: 63  DRAELT 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 1e-07
 Identities = 49/455 (10%), Positives = 110/455 (24%), Gaps = 27/455 (5%)

Query: 81  SLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRG----SLPLCLANLTSLRVLDV 135
            +Q L     EL+      L   L   + + +D+  L       +   L    +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 136 SDNQLT----QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE 191
             N+L       +          I++L L N     +   +                  E
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL------RTLPTLQE 116

Query: 192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENN 251
                N L                       L +      +     ++    P++     
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRN 311
           +N +        L           + L                 I      L +L L  N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 312 AFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF 371
                  +      +     +    +                + A  +        +E  
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
           +    +  +             +  C          + +  +    L       +  + +
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI--SNNRLED 354

Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPA-----SIEQLHLSKNKIEGR-- 484
             +           + L++L L++  +  +  S  +       S+ +L LS N +     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 485 ---LESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
              +ES+      L  L L        + +++  L
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 61/467 (13%), Positives = 115/467 (24%), Gaps = 33/467 (7%)

Query: 56  VHLQELYIGGYDLRGS-LPWCLANMTSLQVLYASSNELTG----NISPGLCELVLMRELH 110
           + +Q L I   +L  +     L  +   QV+      LT     +IS  L     + EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 111 IDNNDLRGSLPLCLA-----NLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
           + +N+L      C+          ++ L + +  LT          L ++  L   +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH 225
                +   L               + E    S      L  +  +              
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285
                      L  S      L   +  +      D     +    +           SN
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA-----LGSN 236

Query: 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345
                 +       L     L        G       D+       +   +   E+    
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAG 292

Query: 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405
                    L        G      +  +   T     +  +            +    L
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352

Query: 406 SDNHLTGEIPRWLGNLSALEDIIMPNNNLEG----PIPIEFCQLNSLKILDLSNNSIFRT 461
            D  +           S L  + + + ++       +       +SL+ LDLSNN +   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 462 LPSCFSPA------SIEQLHLSKNKIEG----RLESIIHDSPHLVTL 498
                  +       +EQL L           RL+++  D P L  +
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 50/457 (10%), Positives = 107/457 (23%), Gaps = 43/457 (9%)

Query: 37  LSLINSSKNTILDQGLRQLV----HLQELYIGGYDLRG----SLPWCLANMTSLQVLYAS 88
           +  ++     + D    +L+      Q + +    L       +   L    +L  L   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 89  SNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP 148
           SNEL       + + +      I    L+               L         ++S + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 149 LMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFI 208
           L             +   +         +     + +                       
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 209 SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADN-----S 263
                +              LK       + + +    +V + A+L  L L  N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 264 LFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 323
           +       +H   +L TL +           ++   L     L     A N         
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 324 MKMLERVD--------ISYNQLTGEIPERMAA--------RCFSLEILALSNNSLQGHIF 367
           +               +     T       ++            +    L +  ++    
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 368 SEKFNLTNLMTLQLDGNKFTGE----ILESLSKCYLLEGLYLSDNHLTGEIPRWLG---- 419
                 + L  L L     +      +  +L   + L  L LS+N L       L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 420 -NLSALEDIIMPNNNLEGPIPIEFCQL----NSLKIL 451
                LE +++ +      +      L     SL+++
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 46/438 (10%), Positives = 107/438 (24%), Gaps = 28/438 (6%)

Query: 1   FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQL----- 55
               +  + + + +  +    +  + +  +      L+ +N   N + D G+  +     
Sbjct: 23  LPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80

Query: 56  ---VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHID 112
                +Q+L +    L G+    L++           +     +     +L+      + 
Sbjct: 81  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE---GLL 137

Query: 113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISL 172
           +   R           S    +   + L        L    +                S 
Sbjct: 138 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 197

Query: 173 EPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNA 232
             L  L       +           +     +   +  +   D G         H     
Sbjct: 198 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 257

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
               +   G       +    L               +     + L    +        +
Sbjct: 258 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 317

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
            V+  ++         S  A N  +                 +    E+ + +      L
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR------LEDAGVRELCQGLGQPGSVL 371

Query: 353 EILALSNNSLQG----HIFSEKFNLTNLMTLQLDGNKFTGEILESLSK-----CYLLEGL 403
            +L L++  +       + +      +L  L L  N      +  L +       LLE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 404 YLSDNHLTGEIPRWLGNL 421
            L D + + E+   L  L
Sbjct: 432 VLYDIYWSEEMEDRLQAL 449

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 49/339 (14%), Positives = 91/339 (26%), Gaps = 27/339 (7%)

Query: 120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLS 179
           L  CL        L++++  L+  +   P      +E L+ S N   + P   E   +L 
Sbjct: 32  LRDCLDR--QAHELELNNLGLSS-LPELP----PHLESLVASCNSLTELP---ELPQSLK 81

Query: 180 KRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL 239
                ++ + A ++              +     +   +F K +   ++           
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 240 SGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY 299
                    +     E   L   +   +    +     L     S       +       
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE------ 353
               +    + N    ++P     ++ L   D     L                      
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 354 --ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
                   N+    I S      +L  L +  NK   E+     +   LE L  S NHL 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450
            E+P    NL  L    +  N L    P     +  L++
Sbjct: 318 -EVPELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 431 NNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH 490
            N     I        SL+ L++SNN +   LP+      +E+L  S N     L  +  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP--RLERLIASFN----HLAEVPE 321

Query: 491 DSPHLVTLDLSCNSLHGSIPNQIGRLP 517
              +L  L +  N L    P+    + 
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 54/345 (15%), Positives = 102/345 (29%), Gaps = 34/345 (9%)

Query: 57  HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDL 116
              EL +    L  SLP    +   L+ L AS N LT  +      L  +   + +   L
Sbjct: 39  QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 117 RGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLF 176
               PL          L+       Q      L + + ++ + + NN   + P     L 
Sbjct: 94  SDLPPL----------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 177 NLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSH 236
            ++       E+       + +       +   L              +  +      + 
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 237 LNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEI 296
             L+  + +  +             +       + +  +      ++  +     +   I
Sbjct: 204 PFLTTIYADNNLLKTLP--------DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 297 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356
            + L  L       NA +  I S       LE +++S N+L  E+P         LE L 
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLI 310

Query: 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG--EILESLSKCYL 399
            S N L            NL  L ++ N      +I ES+    +
Sbjct: 311 ASFNHLA----EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 66  YDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLA 125
                 +        SL+ L  S+N+L   +      L     L    N L   +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVP---E 321

Query: 126 NLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162
              +L+ L V  N L +     P     S+E+L +++
Sbjct: 322 LPQNLKQLHVEYNPLRE-FPDIP----ESVEDLRMNS 353

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 48/284 (16%), Positives = 87/284 (30%), Gaps = 24/284 (8%)

Query: 233 DLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
           DL+  NL       L+       R      S          S  ++  +D+SN+      
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRC---PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
              I +    L +L+L     +  I ++ A    L R+++S      E   +        
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-- 120

Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
                  + L     S  F+ T         +        +LS           +   + 
Sbjct: 121 -------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------KNLQKSD 166

Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF--RTLPSCFSPAS 470
                    + +   +  +  L+     EF QLN L+ L LS        TL       +
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 471 IEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIG 514
           ++ L +     +G L+ +    PH   L ++C+         IG
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 35/273 (12%), Positives = 79/273 (28%), Gaps = 23/273 (8%)

Query: 83  QVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ 142
           Q L  +   L  +++  L    +        + +   L    +    ++ +D+S++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGV-IAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 143 NISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPK 202
           +     L   + ++ L L       S   +  L   S     +   C+            
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 203 FQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADN 262
                  L+         K +       +  ++ LNLSG   N    +            
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD------------ 166

Query: 263 SLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSR-NAFNGSIPSSF 321
                    +     L  LD+S++    +   +    L  L  L+LSR            
Sbjct: 167 -----LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEI 354
            ++  L+ + +    +     + +      L+I
Sbjct: 222 GEIPTLKTLQVF-GIVPDGTLQLLKEALPHLQI 253

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 8e-06
 Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 4/230 (1%)

Query: 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166
           R      + +   +P  L    +   L     +L   I          +E++ +S N   
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 66

Query: 167 QSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ 226
           +   +          +    +       +  +      L ++ +S             H 
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN 286
                 D+                 +    +L  + +          +  +L  L++S+N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 287 FFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
                +P ++     G + L++SR   +        ++K L        +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 24/228 (10%)

Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
           +    +++  ++    A+L  +  L      +T   +   + +L ++  L L +N     
Sbjct: 24  IAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDL 78

Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHD 228
                            +           +            S      T  +       
Sbjct: 79  AP-------------LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFF 288
              ++L  L L       +           L+  +   S   P+ +  KL TL   +N  
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 289 RGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
               P+     LP L++++L  N  +   P   A+   L  V ++ NQ
Sbjct: 186 SDISPLA---SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 24/235 (10%)

Query: 125 ANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTF 184
             L +   +    + +T  ++ +    L  I  L            ++E +  L+     
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV----TTIEGVQYLNNLIGL 68

Query: 185 DSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFP 244
           + +    T+        K     +S +   +          +                  
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL------------DLTS 116

Query: 245 NWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM 304
             + +         L    L  +    I     L  L   +        +     L  L 
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
            L    N  +   P   A +  L  V +  NQ++   P    A   +L I+ L+N
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 394 LSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453
           L+    L  L   DN ++   P  L +L  L ++ + NN +    P      ++L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 454 SN 455
           +N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 106 MRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162
           +  L  D+N +    PL  A+L +L  + + +NQ++     SPL + +++  + L+N
Sbjct: 175 LTTLKADDNKISDISPL--ASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 41/322 (12%), Positives = 94/322 (29%), Gaps = 28/322 (8%)

Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNIS---SSPLMHLTSIEELILSNNHF 165
             I   D + S+   L    S++ + +S N +    +   S  +     +E    S+   
Sbjct: 13  DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH 225
            +    +     L  +               N+  P  Q   I                +
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSL----FGSFWMPIHSHQKLATL 281
               +        L     N   +N   L  ++   N L       +     SH+ L T+
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 282 DVSNNFFRGHIPVEIGTYL--------PGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS 333
            +  N  R      +               +  N   +  + ++  +      L  + ++
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 334 YNQLTGEIPERMAARCF-----SLEILALSNNSLQGHIFSE-----KFNLTNLMTLQLDG 383
              L+      +           L+ L L  N ++              + +L+ L+L+G
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 384 NKFT--GEILESLSKCYLLEGL 403
           N+F+   ++++ + + +   G 
Sbjct: 312 NRFSEEDDVVDEIREVFSTRGR 333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA 190
           RVL ++   LT       L  L  +  L LS+N     P +L  L  L   +  D+ +  
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK--FPNWLV 248
                      +  L    L          + L     L   +L   +L  +      L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAA----IQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 249 ENNANLERLL 258
           E   ++  +L
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH 365
           L+L+      ++      + ++  +D+S+N+L    P   A RC  +       +     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALE 56

Query: 366 IFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSDNHLTGE 413
                 NL  L  L L  N+      ++ L  C  L  L L  N L  E
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 4/105 (3%)

Query: 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE 413
           +L L++  L   +      L  +  L L  N+       +L+    LE L  SDN     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNA-LEN 57

Query: 414 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458
           +          E ++  N   +            L +L+L  NS+
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 378 TLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP 437
            L L     T  +L  L +  L+  L LS N L    P  L  L  LE +   +N LE  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 438 IPIEFCQLNSLKILDLSNNSI--FRTLPSCFSPASIEQLHLSKNKI---EGRLESIIHDS 492
             +       L+ L L NN +     +    S   +  L+L  N +   EG  E +    
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 493 PHLVTL 498
           P + ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 76  LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
           L  +  +  L  S N L     P L  L  +  L   +N L     +   NL  L+ L +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDGVA--NLPRLQELLL 72

Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178
            +N+L Q+ +  PL+    +  L L  N   Q     E L  +
Sbjct: 73  CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI 390
            +++  LT  +      +   +  L LS+N L+         L  L  L    +    E 
Sbjct: 4   HLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVL--QASDNALEN 57

Query: 391 LESLSKCYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPNNNLEG 436
           ++ ++    L+ L L +N L      + L +   L  + +  N+L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 41  NSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL 100
            +    I ++    L  L+ L +    +   +P    ++ SL  L  +SN    N     
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA- 145

Query: 101 CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT 141
                +R+  ++    R   P   + +  +++ D+  ++  
Sbjct: 146 WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK 183

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 5/123 (4%)

Query: 347 ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
           ++ +     AL    L      +       + L    +     +         L  L LS
Sbjct: 17  SKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLS 73

Query: 407 DNHLTG--EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS 464
           +N L    ++   +     L+ + +  N L+    ++  +   L+ L L  NS+  T   
Sbjct: 74  NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

Query: 465 CFS 467
             +
Sbjct: 134 QST 136

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 292 IPVEIGTYLP-----GLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA 346
           +P  I            +  NL + +   ++  +  ++  ++++  + + +      +  
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY- 66

Query: 347 ARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL------------------QLDGNKFTG 388
               ++  L L+ N L              + L                   L       
Sbjct: 67  --LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL 448
             +  L     LE LYL +N +T         L+ L+ + + +N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 449 KILDLSNNSIFRTLPSCFSPASIEQLHLS 477
           + L LS N I   L +     +++ L L 
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.51

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-25  Score=215.14  Aligned_cols=189  Identities=23%  Similarity=0.258  Sum_probs=120.8

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +++++.+++++|.+++..  .+..+++|+++++++|.+. .++  .+..+++|+.+++++|.+++..  .+..+++|++|
T Consensus       196 l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  268 (384)
T d2omza2         196 LTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  268 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             ccccceeeccCCccCCCC--cccccCCCCEEECCCCCCC-Ccc--hhhcccccchhccccCccCCCC--cccccccCCEe
Confidence            455555555555555332  2344555666666666555 222  2334556666666666655432  35566677777


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      +++++.+...  ..+..++.++.+.+.+|.+.+  ...+..+++++.|++++|++.+..  .+..+++|++|++++|+++
T Consensus       269 ~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         269 KLGANQISNI--SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             eccCcccCCC--Ccccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            7777766532  235667777777777777763  234677777778888877777543  3667788888888888876


Q ss_pred             cCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271          460 RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS  504 (517)
Q Consensus       460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~  504 (517)
                      +. +....+++|++|++++|++++..|  +.++++|++|+|++|.
T Consensus       343 ~l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         343 DV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CC-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CC-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            53 233337888888888888887654  7888888888888873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.6e-25  Score=213.88  Aligned_cols=104  Identities=30%  Similarity=0.397  Sum_probs=75.5

Q ss_pred             hhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCc
Q 042271           52 LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR  131 (517)
Q Consensus        52 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  131 (517)
                      .+.+.+|++|+++++.+++ + +.+..+++|++|++++|.+++ ++ .++++++|++|++++|.+.+..  .+..+++|+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~  113 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT--PLANLTNLT  113 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc--ccccccccc
Confidence            4567788899998888874 3 457788889999999988884 44 3888889999999999887543  378888999


Q ss_pred             EEeccCCccccccCCCcccCCCCCceeecccCC
Q 042271          132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNH  164 (517)
Q Consensus       132 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  164 (517)
                      .|+++++.+.+ ..  .......+.......+.
T Consensus       114 ~L~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  143 (384)
T d2omza2         114 GLTLFNNQITD-ID--PLKNLTNLNRLELSSNT  143 (384)
T ss_dssp             EEECCSSCCCC-CG--GGTTCTTCSEEEEEEEE
T ss_pred             ccccccccccc-cc--ccccccccccccccccc
Confidence            99988887754 22  23344455555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.4e-25  Score=207.29  Aligned_cols=252  Identities=24%  Similarity=0.322  Sum_probs=202.7

Q ss_pred             cccceEeccCCccCCC--cccccccCCcccEEEccC-CcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271          252 ANLERLLLADNSLFGS--FWMPIHSHQKLATLDVSN-NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE  328 (517)
Q Consensus       252 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~  328 (517)
                      .++++|+++++.+.+.  ++..+..+++|++|++++ |.+.|.+|..+.. +++|++|++++|.+.+..+..+..++.|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhc
Confidence            3688889998887663  456788889999999986 6787788888777 88999999999988877888888889999


Q ss_pred             EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCC-cEEEccCcccccccchhhhhcccCCeEEecC
Q 042271          329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL-MTLQLDGNKFTGEILESLSKCYLLEGLYLSD  407 (517)
Q Consensus       329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (517)
                      .+++++|.+.+.+|..+ ..++.++.+++++|.+.+..+..+..+..+ +.+++++|++.+..+..+..+. ...+++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             ccccccccccccCchhh-ccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999998876666544 468889999999998887777777777665 7888888888877776666654 44688888


Q ss_pred             CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccch
Q 042271          408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~  486 (517)
                      +...+..|..+..+++++.+++.++.+.+.. ..+..+++|+.|++++|++++..|..+. +++|++|++++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            8887778888888899999999999887544 4677788999999999999877776655 7889999999999887777


Q ss_pred             hhhcCCCcccEEECCCCcC-CCC
Q 042271          487 SIIHDSPHLVTLDLSCNSL-HGS  508 (517)
Q Consensus       487 ~~l~~~~~L~~l~l~~n~~-~~~  508 (517)
                      + +.++++|+.+++++|+. .|.
T Consensus       286 ~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             C-STTGGGSCGGGTCSSSEEEST
T ss_pred             C-cccCCCCCHHHhCCCccccCC
Confidence            4 56778888899999974 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-24  Score=194.77  Aligned_cols=226  Identities=22%  Similarity=0.177  Sum_probs=192.7

Q ss_pred             EEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccC
Q 042271          280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN  359 (517)
Q Consensus       280 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~  359 (517)
                      .++.++.+++ .+|..+   .+++++|+|++|.++...+.+|..+++|++|++++|.+. .++...+..++.++.+....
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            4556666666 777655   357899999999998767778999999999999999988 66667777788888887754


Q ss_pred             -CcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271          360 -NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI  438 (517)
Q Consensus       360 -n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  438 (517)
                       +.+....+..+.++++|++|++++|.+.......+..+++|+.+++++|.++...+.+|..+++|+.|++++|.+....
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence             5566666777889999999999999987667777888899999999999998777788999999999999999998777


Q ss_pred             cccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271          439 PIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP  510 (517)
Q Consensus       439 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~  510 (517)
                      +.+|.++++|+.+++++|++++..+..+. +++|++|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            88899999999999999999888777776 7899999999999999999999999999999999999998775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.9e-24  Score=198.38  Aligned_cols=253  Identities=25%  Similarity=0.337  Sum_probs=196.3

Q ss_pred             CcCEeeccCCcCCC--CCChhhhhcccccceEeccC-CccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCc
Q 042271          228 DLKNADLSHLNLSG--KFPNWLVENNANLERLLLAD-NSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM  304 (517)
Q Consensus       228 ~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  304 (517)
                      +++.++++++.+.+  .+|..+ ..+++|++|++++ +.+.+.++..+..+++|++|++++|.+.+..+..+.. ++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhc
Confidence            46666777766665  345554 5677777777775 5666666677778888888888888877555544444 78888


Q ss_pred             EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc
Q 042271          305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN  384 (517)
Q Consensus       305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  384 (517)
                      .+++++|.+...+|..+..++.++.+++++|.+.+.+|..+......++.+.+++|.+++..+..+..+..+ .+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            888888888878888888888889999988888877776665533345888888888887776666665544 6888888


Q ss_pred             ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271          385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       385 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      ......+..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++.+.+|..|.++++|++|+|++|++++..|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            8877777778888899999999998875544 678889999999999999988899999999999999999999888887


Q ss_pred             CCCcccccEEEccCCc-CCcc
Q 042271          465 CFSPASIEQLHLSKNK-IEGR  484 (517)
Q Consensus       465 ~~~~~~L~~L~l~~n~-~~~~  484 (517)
                      ...+++|+.+++++|+ +.+.
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEEST
T ss_pred             cccCCCCCHHHhCCCccccCC
Confidence            6668899999999987 4443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.4e-22  Score=186.39  Aligned_cols=272  Identities=20%  Similarity=0.171  Sum_probs=187.8

Q ss_pred             CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271          228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN  307 (517)
Q Consensus       228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  307 (517)
                      ..+.++.++..++ .+|..+   .+++++|++++|.++......+..+++|++|+++++.+. .++...+..++.|+.|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4455555555555 455533   356788888888776666566777788888888888776 44333334477888888


Q ss_pred             ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc--ccccccccCCCCCcEEEccCcc
Q 042271          308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ--GHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      +++|.++. ++..  ....++.|++.+|.+. .++...+.....+..+....+...  ......+..+++|+.+++++|.
T Consensus        86 l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLKE-LPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCSB-CCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccCc-Cccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            88887773 3322  2356778888888776 566666666777777777776443  2334456677888888888887


Q ss_pred             cccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCC
Q 042271          386 FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC  465 (517)
Q Consensus       386 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  465 (517)
                      +... +..  .+++|++|++++|......+..+.+++.++.|++++|.+.+..+..+.++++|++|++++|+++......
T Consensus       162 l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l  238 (305)
T d1xkua_         162 ITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL  238 (305)
T ss_dssp             CCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred             cccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            7632 222  3567888888888877677777888888888888888887766777888888888888888886554434


Q ss_pred             CCcccccEEEccCCcCCccchhhh------cCCCcccEEECCCCcCC-CCCCc
Q 042271          466 FSPASIEQLHLSKNKIEGRLESII------HDSPHLVTLDLSCNSLH-GSIPN  511 (517)
Q Consensus       466 ~~~~~L~~L~l~~n~~~~~~~~~l------~~~~~L~~l~l~~n~~~-~~~~~  511 (517)
                      ..+++|++|++++|+++.+....|      ...++|+.|+|++|++. ..+++
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            447888888888888876654444      34578888888888875 34443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5.2e-22  Score=182.42  Aligned_cols=264  Identities=22%  Similarity=0.195  Sum_probs=214.8

Q ss_pred             CCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEE
Q 042271          227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL  306 (517)
Q Consensus       227 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  306 (517)
                      ++++.|++++|+++ .+++..+..+++|++|+++++.+....+..+..+++|+.|++++|+++ .+|...   .+.++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            57899999999887 455444578899999999999988777778889999999999999987 676554   4689999


Q ss_pred             EccCCcCCCCCchhhhcCCCCcEEecccccccc-ccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271          307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       307 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  385 (517)
                      .+.++.+.+.....+.....+..+++..+.... ......+..+++|+.+++.+|.+.....   ..+++|+.|++.+|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---~~~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc---ccCCccCEEECCCCc
Confidence            999999887777778888888899988875442 2234456678899999999998875332   236899999999999


Q ss_pred             cccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCC
Q 042271          386 FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC  465 (517)
Q Consensus       386 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  465 (517)
                      .....+..+.+++.++.|++++|.+.+..+.++.++++|++|++++|++. .+|.+|..+++|++|++++|+++......
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhh
Confidence            88777888999999999999999999777888999999999999999998 56778999999999999999998765544


Q ss_pred             CC-------cccccEEEccCCcCC--ccchhhhcCCCcccEEE
Q 042271          466 FS-------PASIEQLHLSKNKIE--GRLESIIHDSPHLVTLD  499 (517)
Q Consensus       466 ~~-------~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~l~  499 (517)
                      +.       ..+|+.|++++|.+.  ...|.+|+-+.....+.
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            43       588999999999986  35677777665555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=189.60  Aligned_cols=254  Identities=20%  Similarity=0.202  Sum_probs=197.7

Q ss_pred             eeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc-C
Q 042271          232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS-R  310 (517)
Q Consensus       232 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~  310 (517)
                      +..++.++. .+|..+   .+.+++|++++|.++......+..+++|+.++++++.+. .++.......+.++.+.+. .
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccc
Confidence            445555555 556533   356889999999887776677888899999999999887 4555555557788888765 4


Q ss_pred             CcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccccc
Q 042271          311 NAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI  390 (517)
Q Consensus       311 ~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  390 (517)
                      +.++...+..+..+++|++|++++|.+. .++...+..+++|+.+++++|.++......+..+++|+.|++++|.+....
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            4566566778889999999999999886 556666677888999999999998777778888899999999999998777


Q ss_pred             chhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCccc
Q 042271          391 LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPAS  470 (517)
Q Consensus       391 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  470 (517)
                      +..+.++++|+.+++++|.+.+..|..|.++++|++|++++|++.+..+..|..+++|++|++++|++...-...+....
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~  249 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHH
Confidence            88888999999999999999877788999999999999999999887788899999999999999988654332222345


Q ss_pred             ccEEEccCCcCCccchhhhcC
Q 042271          471 IEQLHLSKNKIEGRLESIIHD  491 (517)
Q Consensus       471 L~~L~l~~n~~~~~~~~~l~~  491 (517)
                      ++++....+.+....|..+++
T Consensus       250 l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         250 LQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             HHHCCSEECCCBEEESGGGTT
T ss_pred             HHhCcCCCCceEeCCchHHcC
Confidence            666666666666555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.9e-22  Score=176.24  Aligned_cols=198  Identities=23%  Similarity=0.219  Sum_probs=116.8

Q ss_pred             CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271          276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL  355 (517)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L  355 (517)
                      ..+.+++.++++++ .+|..+   .+++++|+|++|.+++..+..|..+++|++|++++|.++ .++.  +..+++|+.|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             CCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccc
Confidence            44556677777776 566544   246777777777776555556677777777777777665 4443  2345666666


Q ss_pred             EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271          356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      ++++|.+... ...+..+++|+.|+++++.+.......+..+.++++|++++|.+....+..+..+++++.+++++|++.
T Consensus        83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            6666665532 234555666666666666655444555555566666666666665444455555566666666666665


Q ss_pred             ccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcC
Q 042271          436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI  481 (517)
Q Consensus       436 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  481 (517)
                      +..+..|..+++|++|+|++|+++.....++.+++|+.|++++|.+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            5444555555666666666666554334444455555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.9e-21  Score=170.67  Aligned_cols=199  Identities=20%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEc
Q 042271          302 GLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQL  381 (517)
Q Consensus       302 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  381 (517)
                      .+.+++.++++++ .+|..+.  +++++|++++|.+. .++...+.++++|++|++++|.++...  .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            3344444444444 2333221  34555555555554 444444444555555555555544321  2334555555555


Q ss_pred             cCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271          382 DGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT  461 (517)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  461 (517)
                      ++|++. ..+..+..+++|+.|++++|.+....+..+..+.+++.|++.+|.+....+..+..+++|+.+++++|++++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            555544 2233444455555555555555444444444555555555555555444444444455555555555555444


Q ss_pred             CCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271          462 LPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS  508 (517)
Q Consensus       462 ~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~  508 (517)
                      .+..+. +++|++|++++|.++. +|..+..+++|+.|+|++||+.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCCC
Confidence            444333 4555555555555552 222333445555555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.4e-22  Score=193.26  Aligned_cols=110  Identities=23%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CcceEEeccccccCCcc-hhhhhhcccCcEEEecCCcccC----CccccccCCCCCcEEEccCCccCCCCCcchh-----
Q 042271           32 PSLKFLSLINSSKNTIL-DQGLRQLVHLQELYIGGYDLRG----SLPWCLANMTSLQVLYASSNELTGNISPGLC-----  101 (517)
Q Consensus        32 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----  101 (517)
                      ++|+.||++.+.+.... ...+..++++++|+|++|+++.    .+..++..+++|++|++++|.++......+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35667777666665443 2235567777777777777652    2334556777777777777766522111121     


Q ss_pred             ccccCcEEEccccccCCc----ccccccCCCCCcEEeccCCccc
Q 042271          102 ELVLMRELHIDNNDLRGS----LPLCLANLTSLRVLDVSDNQLT  141 (517)
Q Consensus       102 ~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~  141 (517)
                      ...+|++|++++|.+++.    ++.++..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            124677777777777643    3445666777777777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-20  Score=184.19  Aligned_cols=382  Identities=22%  Similarity=0.146  Sum_probs=197.2

Q ss_pred             ccCcEEEecCCcccCCc-cccccCCCCCcEEEccCCccCCC----CCcchhccccCcEEEccccccCCcc----ccccc-
Q 042271           56 VHLQELYIGGYDLRGSL-PWCLANMTSLQVLYASSNELTGN----ISPGLCELVLMRELHIDNNDLRGSL----PLCLA-  125 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~----~~~~~-  125 (517)
                      .+|++||++++++++.. ...+..++++++|+|++|.++..    ++..+..+++|++|+|++|.+++..    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36889999999887432 34456788889999999987732    2334567888999999988876322    22222 


Q ss_pred             CCCCCcEEeccCCccccccC---CCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCc
Q 042271          126 NLTSLRVLDVSDNQLTQNIS---SSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPK  202 (517)
Q Consensus       126 ~l~~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  202 (517)
                      ...+|++|++++|++++...   ...+..+++|++|++++|.+....     .                           
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~-----~---------------------------  129 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-----L---------------------------  129 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-----H---------------------------
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh-----h---------------------------
Confidence            23478889998888754211   114566788888888887641100     0                           


Q ss_pred             ceeeEeeccccccCCCcccccc-ccCCcCEeeccCCcCCCCCChhh---hhcccccceEeccCCccCCCccc----cc-c
Q 042271          203 FQLTFISLSGYIDGGTFPKFLY-HQHDLKNADLSHLNLSGKFPNWL---VENNANLERLLLADNSLFGSFWM----PI-H  273 (517)
Q Consensus       203 ~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~----~~-~  273 (517)
                                    ..+...+. .......................   ......++.+.++++........    .+ .
T Consensus       130 --------------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~  195 (460)
T d1z7xw1         130 --------------QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD  195 (460)
T ss_dssp             --------------HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred             --------------hhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence                          00000010 11122233333332221111111   12335566666666554321110    11 1


Q ss_pred             cCCcccEEEccCCcccccCCh---hhhhccCCCcEEEccCCcCCCC-----CchhhhcCCCCcEEeccccccccccch--
Q 042271          274 SHQKLATLDVSNNFFRGHIPV---EIGTYLPGLMDLNLSRNAFNGS-----IPSSFADMKMLERVDISYNQLTGEIPE--  343 (517)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~~~-----~~~~~~~l~~L~~L~l~~~~i~~~~~~--  343 (517)
                      .......+.+..+.+......   ......+.++.+.+.++.+...     ..........++.+++++|.+......  
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~  275 (460)
T d1z7xw1         196 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  275 (460)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccc
Confidence            112445566666554311101   1112255677777777654321     122233455677777777766532211  


Q ss_pred             -hHHhhcCCCcEEEccCCcccccccccc-----cCCCCCcEEEccCcccccccchh----hhhcccCCeEEecCCCCCCc
Q 042271          344 -RMAARCFSLEILALSNNSLQGHIFSEK-----FNLTNLMTLQLDGNKFTGEILES----LSKCYLLEGLYLSDNHLTGE  413 (517)
Q Consensus       344 -~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~  413 (517)
                       ......+.++.+++++|.+.+.....+     .....|+.++++++.+.......    +..+++|++|++++|++.+.
T Consensus       276 ~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~  355 (460)
T d1z7xw1         276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  355 (460)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             cccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence             112345667777777776653222211     13356777777776665433222    23445677777777766432


Q ss_pred             ----cchhh-cCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCCCCC------cccccEEEccC
Q 042271          414 ----IPRWL-GNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPSCFS------PASIEQLHLSK  478 (517)
Q Consensus       414 ----~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~  478 (517)
                          ++..+ ...+.|++|++++|.+.+.    +...+..+++|++|+|++|++++.....+.      ...|+.|++.+
T Consensus       356 g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence                22222 2345566666666666432    233344556666666666666443222211      23466666666


Q ss_pred             CcCCc
Q 042271          479 NKIEG  483 (517)
Q Consensus       479 n~~~~  483 (517)
                      +.+..
T Consensus       436 ~~~~~  440 (460)
T d1z7xw1         436 IYWSE  440 (460)
T ss_dssp             CCCCH
T ss_pred             CCCCH
Confidence            66553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.7e-16  Score=148.64  Aligned_cols=95  Identities=31%  Similarity=0.367  Sum_probs=61.6

Q ss_pred             ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271           56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV  135 (517)
Q Consensus        56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L  135 (517)
                      .++++|+++++.++ .+|+.   .++|++|++++|.++ .+|..   ..+|+.|++++|.++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            46777777777776 45542   456777777777777 55654   346777777777766 22221   135777888


Q ss_pred             cCCccccccCCCcccCCCCCceeecccCCC
Q 042271          136 SDNQLTQNISSSPLMHLTSIEELILSNNHF  165 (517)
Q Consensus       136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  165 (517)
                      ++|.+.. ++.  +..+++|++++++++.+
T Consensus       106 ~~n~l~~-lp~--~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         106 SNNQLEK-LPE--LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSSCCSS-CCC--CTTCTTCCEEECCSSCC
T ss_pred             ccccccc-ccc--hhhhccceeeccccccc
Confidence            8777753 443  56677777887777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.7e-17  Score=144.69  Aligned_cols=186  Identities=23%  Similarity=0.297  Sum_probs=125.7

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      +.+|+.|++.+|.+++ + ..+..+++|++|++++|.+.+..+   +..+++++.+++++|.+++.  ..+..+++|+.+
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc---cccccccccccccccccccc--cccccccccccc
Confidence            4566777777776663 2 346667777777777776663222   44566777777777766532  245667777777


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      +++++...+  ...+...+.++.+.++++.+...  ..+..+++|+.|++.+|.+.+..  .+.++++|++|++++|+++
T Consensus       113 ~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccC
Confidence            777776643  33456667777888877776533  23566778888888888776432  3677888888888888876


Q ss_pred             cCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECC
Q 042271          460 RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLS  501 (517)
Q Consensus       460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~  501 (517)
                      +. +....+++|++|++++|++++..+  +.++++|+.|+++
T Consensus       187 ~l-~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CC-GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CC-hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            53 333347888888888888886543  7888888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.1e-15  Score=142.84  Aligned_cols=113  Identities=30%  Similarity=0.365  Sum_probs=79.3

Q ss_pred             CcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEc
Q 042271           32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI  111 (517)
Q Consensus        32 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  111 (517)
                      .++++|+|+++.+..+|+    ..++|++|++++|+++ .+|+.   ..+|+.|++++|.++ .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            368889999888888875    2568899999998888 55654   457888888888777 3332 1  146889999


Q ss_pred             cccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccC
Q 042271          112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN  163 (517)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~  163 (517)
                      ++|.++ .+|. +..+++|++|+++++.+.. .+    ...+.+..+.+..+
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~----~~~~~l~~l~~~~~  150 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNN  150 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc-cc----cccccccchhhccc
Confidence            999887 4554 6778899999998887753 22    12345556655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=151.73  Aligned_cols=220  Identities=14%  Similarity=0.064  Sum_probs=160.5

Q ss_pred             cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271          279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS  358 (517)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~  358 (517)
                      +.++.++..++ .+|..+   ++++++|++++|.++...+.+|.++++|++|++++|.+...++...+.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777776 677654   35789999999998865666788899999999999988766777777788889998876


Q ss_pred             C-CcccccccccccCCCCCcEEEccCcccccccch-hhhhcccCCeEEecCCCCCCccchhhcCCC-CCcEEECCCCccc
Q 042271          359 N-NSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLTGEIPRWLGNLS-ALEDIIMPNNNLE  435 (517)
Q Consensus       359 ~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  435 (517)
                      . +.+.......+..+++|+++++.++.+...... .+.....++.+...++.+....+..+.+++ .++.+++.+|++.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            5 566666667788899999999999888643222 222334444555566666655556666654 7888999998888


Q ss_pred             ccccccccCCCCccEE-EccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCC
Q 042271          436 GPIPIEFCQLNSLKIL-DLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN  503 (517)
Q Consensus       436 ~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n  503 (517)
                      ...+..+ ..++++++ ++++|+++...+..+. +++|++|++++|.++..++..|.+++.|+.+++.+.
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            5444444 45666555 4577778766666555 789999999999998777788888888888776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=155.83  Aligned_cols=224  Identities=18%  Similarity=0.170  Sum_probs=130.1

Q ss_pred             CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc
Q 042271          230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS  309 (517)
Q Consensus       230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  309 (517)
                      +++++++..+.......+..  .....+.+......... .......+|++|+++++.+.+.....+...+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35666655544322222221  23344555444332222 2223445788888888877644444555668888888888


Q ss_pred             CCcCCCCCchhhhcCCCCcEEecccc-ccccccchhHHhhcCCCcEEEccCCc-ccccc-ccccc-CCCCCcEEEccCcc
Q 042271          310 RNAFNGSIPSSFADMKMLERVDISYN-QLTGEIPERMAARCFSLEILALSNNS-LQGHI-FSEKF-NLTNLMTLQLDGNK  385 (517)
Q Consensus       310 ~~~i~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~~~-~~~~L~~L~l~~~~  385 (517)
                      +|.+++.....+..+++|++|++++| .+++.....+...+++|++|++++|. +++.. ...+. .++.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            88877666777788888888888886 34433333445567888888888863 33221 12222 35678888887653


Q ss_pred             --cccccc-hhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEECCCC-cccccccccccCCCCccEEEccCC
Q 042271          386 --FTGEIL-ESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDIIMPNN-NLEGPIPIEFCQLNSLKILDLSNN  456 (517)
Q Consensus       386 --~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n  456 (517)
                        +++... ....+|++|++|++++|. +++.....+..+++|++|++++| .+.+.....+..+++|++|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              332222 223456777777777763 44444555566666666666665 333333344555566666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4e-17  Score=142.22  Aligned_cols=188  Identities=22%  Similarity=0.285  Sum_probs=109.5

Q ss_pred             ccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCC
Q 042271          273 HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL  352 (517)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L  352 (517)
                      ..+.+|+.|++.+|.++ .+. .+. .+++|++|++++|.+++..  .+..+++++.+++++|.++ .++.  +.++++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSA--IAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGG--GTTCTTC
T ss_pred             HHcCCcCEEECCCCCCC-cch-hHh-cCCCCcEeecCCceeeccc--ccccccccccccccccccc-cccc--ccccccc
Confidence            44456666666666665 332 232 2666666666666665332  2566666666666666655 3332  3346666


Q ss_pred             cEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCC
Q 042271          353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNN  432 (517)
Q Consensus       353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  432 (517)
                      +.+.++++...+.  ..+...+.++.+.+.++.+..  ...+..+++|++|++++|.+....  .++++++|+.|++++|
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN  183 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhch--hhhhccccccccccccccccccch--hhcccccceecccCCC
Confidence            6666666655432  234456666666666666543  233556666777777777665322  3566677777777777


Q ss_pred             cccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEcc
Q 042271          433 NLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS  477 (517)
Q Consensus       433 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  477 (517)
                      ++.+. + .+.++++|++|++++|++++..+ ...+++|++|+++
T Consensus       184 ~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI-S-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC-G-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccCCC-h-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            66642 2 25666777777777777655432 2336677777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.4e-17  Score=141.57  Aligned_cols=211  Identities=18%  Similarity=0.157  Sum_probs=166.8

Q ss_pred             CcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccc-ccccccCCCCCcEEEc
Q 042271          303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH-IFSEKFNLTNLMTLQL  381 (517)
Q Consensus       303 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l  381 (517)
                      .+.++.++.+++ .+|..+  .+++++|++++|.+. .++...+.++++|++|++++|.+... ....|..++.++++.+
T Consensus        10 ~~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            357778888877 555444  258999999999998 78888888899999999999988754 3456888999999998


Q ss_pred             cC-cccccccchhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccccccCCC-CccEEEccCCcc
Q 042271          382 DG-NKFTGEILESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPIEFCQLN-SLKILDLSNNSI  458 (517)
Q Consensus       382 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l  458 (517)
                      .. +.+....+..+.++++|+++++++|.+....+ ..+..+..+..+...++.+....+..|.+++ .++.+++++|++
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            65 56776777888999999999999999874322 2344456666777788888766666777765 899999999999


Q ss_pred             ccCCCCCCCcccccEEE-ccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCCC
Q 042271          459 FRTLPSCFSPASIEQLH-LSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP  517 (517)
Q Consensus       459 ~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~  517 (517)
                      +.....++...+++++. +++|.++...++.|.++++|++|++++|+|+...+..|.+++
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            88777777777776665 677889988888999999999999999999955455576653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=9.5e-18  Score=141.80  Aligned_cols=178  Identities=21%  Similarity=0.229  Sum_probs=122.3

Q ss_pred             cEEeccccccccccchhHHhhcCCCcEEEccCCcccc-cccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271          328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS  406 (517)
Q Consensus       328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  406 (517)
                      +.++.++++++ .+|..+   .+.+++|++++|.++. .....|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45666666665 555443   2366777777777754 334556677777777777777776667777777788888888


Q ss_pred             CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccch
Q 042271          407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLE  486 (517)
Q Consensus       407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~  486 (517)
                      +|++....+.+|.++++|++|++++|++....+.+|..+++|++++|++|++.......+....++.+.+..+.++...|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            88877666677788888888888888887766777888888888888888875433322223456666677777665555


Q ss_pred             hhhcCCCcccEEECCCCcCCCCCCcc
Q 042271          487 SIIHDSPHLVTLDLSCNSLHGSIPNQ  512 (517)
Q Consensus       487 ~~l~~~~~L~~l~l~~n~~~~~~~~~  512 (517)
                      ..++   +++.++++.|.+++..++.
T Consensus       167 ~~l~---~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         167 SKVR---DVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             TTTT---TSBGGGSCTTTCCCCCC--
T ss_pred             hhhc---CCEeeecCHhhCcCCCCCC
Confidence            5444   5667788889888766543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.4e-16  Score=134.05  Aligned_cols=142  Identities=29%  Similarity=0.294  Sum_probs=78.9

Q ss_pred             cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271          349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII  428 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  428 (517)
                      +++|++|++++|.+++..  .+..+++|++|++++|++++.  ..+..+++|+.|++++|.+.. + ..+..++.++.++
T Consensus        67 l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccccccccc-c-ccccccccccccc
Confidence            444444555444444322  233455555555555555431  235555566666666665542 2 2355556666666


Q ss_pred             CCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECC
Q 042271          429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLS  501 (517)
Q Consensus       429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~  501 (517)
                      +++|.+.+.  ..+..+++|+.+++++|++++.. ....+++|++|++++|.+++. + .|.++++|++|+|+
T Consensus       141 ~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             ccccccccc--ccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            666665532  23445667777777777665432 233367777777777777643 2 47777777777775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.7e-16  Score=131.06  Aligned_cols=178  Identities=22%  Similarity=0.301  Sum_probs=103.4

Q ss_pred             EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc
Q 042271          305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN  384 (517)
Q Consensus       305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  384 (517)
                      ...++.+.+++.+  ....++++++|+++++.+. .+..  +..+++|++|++++|.+++..  .+.++++|++|++++|
T Consensus        22 ~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCcc--cccCCccccccccccc
Confidence            3445555555332  2345667777777777766 3321  344667777777777666433  2566677777777766


Q ss_pred             ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271          385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS  464 (517)
Q Consensus       385 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  464 (517)
                      .+...  ..+.+++.|+.+++++|.....  ..+..+++|+.|++++|++.. + ..+..+++|++|++++|++++.. .
T Consensus        95 ~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~-~  167 (199)
T d2omxa2          95 QIADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK-P  167 (199)
T ss_dssp             CCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-G
T ss_pred             ccccc--cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc-c
Confidence            66532  2356666677777766666532  235566666666666666653 2 24556666666666666665432 2


Q ss_pred             CCCcccccEEEccCCcCCccchhhhcCCCcccEE
Q 042271          465 CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTL  498 (517)
Q Consensus       465 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l  498 (517)
                      ...+++|++|++++|++++..  .+..+++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            233566666666666665432  35556666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.2e-17  Score=144.58  Aligned_cols=182  Identities=21%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             CCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCC-cccccCChhhhhccCCCcE
Q 042271          227 HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNN-FFRGHIPVEIGTYLPGLMD  305 (517)
Q Consensus       227 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~  305 (517)
                      .+|++++++++.+.+.....++..+++|++|+++++.+.+.....+..+++|++|++++| .+++.....+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            356666666655554444444555666666666666555444444555566666666664 2332222222333556666


Q ss_pred             EEccCCc-CCCC-Cchhhh-cCCCCcEEeccccc--cccccchhHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEE
Q 042271          306 LNLSRNA-FNGS-IPSSFA-DMKMLERVDISYNQ--LTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       306 L~l~~~~-i~~~-~~~~~~-~l~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L  379 (517)
                      |++++|. +++. ....+. .+++|+.|+++++.  +++.....+...+++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            6666552 2211 111122 23456666665542  2222222333445555555555542 343344444455555555


Q ss_pred             EccCc-ccccccchhhhhcccCCeEEecCC
Q 042271          380 QLDGN-KFTGEILESLSKCYLLEGLYLSDN  408 (517)
Q Consensus       380 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  408 (517)
                      ++++| .+++.....+..+++|+.|++.+|
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            55553 233333334444555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-15  Score=130.01  Aligned_cols=164  Identities=23%  Similarity=0.371  Sum_probs=73.6

Q ss_pred             CCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcE
Q 042271          275 HQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEI  354 (517)
Q Consensus       275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~  354 (517)
                      +.+|+.|+++++.++ .++ .+ ..+++|++|++++|.+++..  .+..+++|++|++++|++. .++.  +..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred             hcCccEEECcCCCCC-Cch-hH-hhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc--ccccccccc
Confidence            345555555555554 222 12 22555555555555554321  2344555555555555544 2321  233455555


Q ss_pred             EEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271          355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL  434 (517)
Q Consensus       355 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  434 (517)
                      +++++|.+..  ...+..++.++.+++++|.+.+  ...+..+++|+.+++++|++.+. + .+.++++|++|++++|++
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC
Confidence            5555554432  1233444555555555554432  22334444555555555544421 1 144444455555554444


Q ss_pred             cccccccccCCCCccEEEcc
Q 042271          435 EGPIPIEFCQLNSLKILDLS  454 (517)
Q Consensus       435 ~~~~~~~~~~~~~L~~L~l~  454 (517)
                      .+ ++ .+.++++|++|+|+
T Consensus       191 ~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         191 SD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CB-CG-GGTTCTTCSEEEEE
T ss_pred             CC-Ch-hhcCCCCCCEEEcc
Confidence            42 22 34444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.5e-15  Score=128.77  Aligned_cols=161  Identities=25%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271          300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL  379 (517)
Q Consensus       300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  379 (517)
                      ++++++|+++++.++..  ..++.+++|++|++++|.+++ ++.  +.++++|+.|++++|.+....  .+.+++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-ccc--ccCCccccccccccccccccc--ccccccccccc
Confidence            34555555555555421  234455555555555555542 222  334555555555555544321  24455556666


Q ss_pred             EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271          380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF  459 (517)
Q Consensus       380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  459 (517)
                      +++++....  ...+..+++|+.+++++|++.. + ..+..+++++.|++.+|++.+..  .+.++++|++|++++|+++
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            665555542  2234555566666666665542 2 23555666666666666555321  2555666666666666654


Q ss_pred             cCCCCCCCcccccEE
Q 042271          460 RTLPSCFSPASIEQL  474 (517)
Q Consensus       460 ~~~~~~~~~~~L~~L  474 (517)
                      +. +....+++|++|
T Consensus       186 ~i-~~l~~L~~L~~L  199 (199)
T d2omxa2         186 DI-SVLAKLTNLESL  199 (199)
T ss_dssp             CC-GGGGGCTTCSEE
T ss_pred             CC-ccccCCCCCCcC
Confidence            42 222224555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.2e-16  Score=133.24  Aligned_cols=129  Identities=23%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             ccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCC-CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271          278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA  356 (517)
Q Consensus       278 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~  356 (517)
                      .++++.++++++ .+|..+   .+++++|+|++|.++. .....|..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceee
Confidence            346677777766 666554   3467777777777654 33445566666666666666666 44445555566666666


Q ss_pred             ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271          357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT  411 (517)
Q Consensus       357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  411 (517)
                      +++|+++...+.+|.++++|++|+|++|.+....+..|..+++|+++++++|++.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            6666666555555666666666666666665555555555666666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.62  E-value=3.6e-16  Score=145.44  Aligned_cols=186  Identities=20%  Similarity=0.237  Sum_probs=111.7

Q ss_pred             hcCCCCcEEeccccccccccch---hHHhhcCCCcEEEccCCccccccc-------------ccccCCCCCcEEEccCcc
Q 042271          322 ADMKMLERVDISYNQLTGEIPE---RMAARCFSLEILALSNNSLQGHIF-------------SEKFNLTNLMTLQLDGNK  385 (517)
Q Consensus       322 ~~l~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~~~  385 (517)
                      ..+++|++|++++|.+.+....   .....+++|+.|++++|.+.....             ......+.|+.+.++++.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555555555554432111   112234555555555554432100             011245677777777776


Q ss_pred             ccccc----chhhhhcccCCeEEecCCCCCCc-----cchhhcCCCCCcEEECCCCccccc----ccccccCCCCccEEE
Q 042271          386 FTGEI----LESLSKCYLLEGLYLSDNHLTGE-----IPRWLGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILD  452 (517)
Q Consensus       386 ~~~~~----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~  452 (517)
                      +....    ...+..++.|+.|++++|.+...     +...+..+++|+.|++++|.+...    +...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            65322    22345567788888888777532     233456677888888888877432    334567788888888


Q ss_pred             ccCCccccCCCCCC-------CcccccEEEccCCcCCcc----chhhhc-CCCcccEEECCCCcCCC
Q 042271          453 LSNNSIFRTLPSCF-------SPASIEQLHLSKNKIEGR----LESIIH-DSPHLVTLDLSCNSLHG  507 (517)
Q Consensus       453 l~~n~l~~~~~~~~-------~~~~L~~L~l~~n~~~~~----~~~~l~-~~~~L~~l~l~~n~~~~  507 (517)
                      +++|.+++.....+       ..+.|++|++++|.++..    +...+. ++++|+.|++++|.+..
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            88888765433222       146789999999988753    334443 57889999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.7e-14  Score=111.12  Aligned_cols=102  Identities=31%  Similarity=0.419  Sum_probs=59.9

Q ss_pred             eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271           35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN  114 (517)
Q Consensus        35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  114 (517)
                      |+|+++++.+..++.  ++.+++|++|++++|.++ .+|..+..+++|++|++++|.++. ++ .++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            455666666655543  566666666666666665 344556666666666666666652 32 3666666666666666


Q ss_pred             ccCCcc-cccccCCCCCcEEeccCCccc
Q 042271          115 DLRGSL-PLCLANLTSLRVLDVSDNQLT  141 (517)
Q Consensus       115 ~~~~~~-~~~~~~l~~L~~L~L~~~~~~  141 (517)
                      +++... ...+..+++|++|++++|++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            665322 234556666666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=117.79  Aligned_cols=130  Identities=18%  Similarity=0.073  Sum_probs=101.5

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR  107 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  107 (517)
                      +.++..+|+|+|++|.+..++. .+..+++|++|++++|.+.. + +.+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4677789999999999998874 66788999999999999884 3 3578899999999999998854444567789999


Q ss_pred             EEEccccccCCcc-cccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecc
Q 042271          108 ELHIDNNDLRGSL-PLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILS  161 (517)
Q Consensus       108 ~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~  161 (517)
                      +|++++|.++... ...+..+++|++|++++|.+.. .+.   ..+..+|+|+.||-.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCC
Confidence            9999999987432 2467888999999999998854 331   136678888888743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=1.6e-14  Score=134.08  Aligned_cols=135  Identities=21%  Similarity=0.187  Sum_probs=63.5

Q ss_pred             cCCCcEEEccCCcccccccc----cccCCCCCcEEEccCcccccc-----cchhhhhcccCCeEEecCCCCCCc----cc
Q 042271          349 CFSLEILALSNNSLQGHIFS----EKFNLTNLMTLQLDGNKFTGE-----ILESLSKCYLLEGLYLSDNHLTGE----IP  415 (517)
Q Consensus       349 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~  415 (517)
                      .+.|+.+.+++|.+......    .+..++.+++|++++|.+.+.     ....+..+++|+.|++++|.+...    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555555555554422111    223445555555555555421     112234455556666665554321    22


Q ss_pred             hhhcCCCCCcEEECCCCccccccc----ccccC--CCCccEEEccCCccccCCCCCCC------cccccEEEccCCcCCc
Q 042271          416 RWLGNLSALEDIIMPNNNLEGPIP----IEFCQ--LNSLKILDLSNNSIFRTLPSCFS------PASIEQLHLSKNKIEG  483 (517)
Q Consensus       416 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~--~~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~~~~  483 (517)
                      ..+..+++|++|++++|.+.+...    ..+..  .+.|++|++++|+++......+.      .++|++|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            334455566666666665543211    12221  24566666666665432211111      3456666666666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.9e-14  Score=108.08  Aligned_cols=104  Identities=28%  Similarity=0.347  Sum_probs=89.5

Q ss_pred             cEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCC
Q 042271           59 QELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN  138 (517)
Q Consensus        59 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~  138 (517)
                      |+|++++|.++ .++ .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            68999999998 444 4899999999999999998 678889999999999999999984 44 5899999999999999


Q ss_pred             ccccccCCCcccCCCCCceeecccCCCCC
Q 042271          139 QLTQNISSSPLMHLTSIEELILSNNHFFQ  167 (517)
Q Consensus       139 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  167 (517)
                      ++.+......+..+++|++|++++|++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99753223468889999999999998643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=116.74  Aligned_cols=127  Identities=21%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             ccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCcc
Q 042271          370 KFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK  449 (517)
Q Consensus       370 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  449 (517)
                      +.++..+++|++++|+|+.+ +..+..+++|+.|++++|++. .++ .+..+++|++|++++|++....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            34555666666666666533 334455666677777776665 332 356666777777777766644444455667777


Q ss_pred             EEEccCCccccCCC-CCC-CcccccEEEccCCcCCccc---hhhhcCCCcccEEE
Q 042271          450 ILDLSNNSIFRTLP-SCF-SPASIEQLHLSKNKIEGRL---ESIIHDSPHLVTLD  499 (517)
Q Consensus       450 ~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~l~  499 (517)
                      +|++++|+++.... ..+ .+++|++|++++|.++...   +..+..+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777776654322 122 2567777777777665443   34567777887776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=3.7e-14  Score=119.35  Aligned_cols=110  Identities=25%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271           28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR  107 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  107 (517)
                      ++.+++|++|+++++.+..++  .+..+++|++|++++|.+. .++.....+++|++|++++|.++. + +.+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCCcc--cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccc
Confidence            556666666666666666664  3666666777777666665 334334444566666666666653 2 3466666666


Q ss_pred             EEEccccccCCccc-ccccCCCCCcEEeccCCcccc
Q 042271          108 ELHIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQ  142 (517)
Q Consensus       108 ~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~  142 (517)
                      +|++++|.++.... ..+..+++|+.|++++|++..
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcccc
Confidence            66666666653211 345666666666666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.8e-12  Score=100.70  Aligned_cols=144  Identities=18%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             CCCCCcEEEccCcccccccchhhhhcccCCeEEecCC-CCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccE
Q 042271          372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN-HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI  450 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  450 (517)
                      .+...+.++..++.+. ..+..+..+++|++|+++++ .++...+.+|.++++|+.|++++|++..+.+.+|.++++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3455667888887776 45666778889999999766 477555678899999999999999998777888999999999


Q ss_pred             EEccCCccccCCCCCCCcccccEEEccCCcCCc-cchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271          451 LDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG-RLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL  516 (517)
Q Consensus       451 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~  516 (517)
                      |+|++|+++......+...+|+.|++++|.+.- -....|..+.......+..+.+++.-|..+..+
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~  151 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM  151 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcC
Confidence            999999998777777777789999999998752 111112211112222333456666666655544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=6e-13  Score=111.82  Aligned_cols=130  Identities=25%  Similarity=0.290  Sum_probs=76.2

Q ss_pred             CchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhh
Q 042271          317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSK  396 (517)
Q Consensus       317 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  396 (517)
                      .+..+..+++|++|++++|.+. .++.  +..+++|+.|++++|.+++. +..+..+++|++|++++|.++.  ...+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~--l~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIAS--LSGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCC--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhcccccccc-cccccccccccccccccccccc--cccccc
Confidence            3445666666666666666665 3332  34466666666666666532 1222334567777777777653  234666


Q ss_pred             cccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccc----------cccCCCCccEEE
Q 042271          397 CYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPI----------EFCQLNSLKILD  452 (517)
Q Consensus       397 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~  452 (517)
                      +++|+.|++++|.+..... ..+..+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7777777777777763221 3566677777777777766432221          144566666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.8e-12  Score=101.10  Aligned_cols=105  Identities=19%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             CcEEEccCCcccccccccccCCCCCcEEEccCc-ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECC
Q 042271          352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN-KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP  430 (517)
Q Consensus       352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  430 (517)
                      .+.++..++...+. +..+..+++|++|++.++ .++.+.+..|.++++|+.|++++|+++...+.+|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            44555555555432 234455566666666544 3555555556666666666666666665555666666666666666


Q ss_pred             CCcccccccccccCCCCccEEEccCCcc
Q 042271          431 NNNLEGPIPIEFCQLNSLKILDLSNNSI  458 (517)
Q Consensus       431 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l  458 (517)
                      +|++....+..|. ..+|++|+|++|++
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhc-cccccccccCCCcc
Confidence            6666633333333 33566666666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1e-08  Score=82.40  Aligned_cols=65  Identities=23%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             cCCCCCcEEEccCCccCCCC--CcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccc
Q 042271           77 ANMTSLQVLYASSNELTGNI--SPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT  141 (517)
Q Consensus        77 ~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  141 (517)
                      ..++.|++|++++|.++...  +..+..+++|+.|++++|.++...+-.+....+|++|++.+|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34444555555555444211  122344455555555555554322222223334555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.5e-07  Score=73.15  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             cCCCCcceEEeccccccCCcch--hhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCc-------
Q 042271           28 GESKPSLKFLSLINSSKNTILD--QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISP-------   98 (517)
Q Consensus        28 ~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------   98 (517)
                      ...++.|++|++++|.+..+..  ..+..+++|++|++++|.++...+....+...|+.|++++|.+......       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4679999999999999998753  4578899999999999999855443444556799999999998754432       


Q ss_pred             chhccccCcEEE
Q 042271           99 GLCELVLMRELH  110 (517)
Q Consensus        99 ~l~~l~~L~~L~  110 (517)
                      .+..+|+|++||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256789999884

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.15  E-value=5.4e-07  Score=72.44  Aligned_cols=64  Identities=14%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             CCCCCcEEEccCc-ccccc----cchhhhhcccCCeEEecCCCCCC----ccchhhcCCCCCcEEECCCCccc
Q 042271          372 NLTNLMTLQLDGN-KFTGE----ILESLSKCYLLEGLYLSDNHLTG----EIPRWLGNLSALEDIIMPNNNLE  435 (517)
Q Consensus       372 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~  435 (517)
                      +.+.|++|+++++ .+...    ....+...+.|++|++++|.+..    .+...+...+.|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4566777777653 34322    12234445566666666666542    12233334445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=3.4e-06  Score=67.61  Aligned_cols=85  Identities=16%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             CCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCccccc------
Q 042271          372 NLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGP------  437 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~------  437 (517)
                      ..+.|++|++++|.+++..    .+.+...+.|++|++++|.+...    +..++...++|++|++++|.....      
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            4455555555555554211    22334455666666666665532    122344445555555555433211      


Q ss_pred             -ccccccCCCCccEEEccCC
Q 042271          438 -IPIEFCQLNSLKILDLSNN  456 (517)
Q Consensus       438 -~~~~~~~~~~L~~L~l~~n  456 (517)
                       +...+...++|++|+++.+
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCCccEeeCcCC
Confidence             2233344555666655544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.75  E-value=2.5e-06  Score=68.50  Aligned_cols=63  Identities=13%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             CCCCCcEEEccC-ccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCcc
Q 042271          372 NLTNLMTLQLDG-NKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNL  434 (517)
Q Consensus       372 ~~~~L~~L~l~~-~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  434 (517)
                      +.+.|++|++++ +.++...    ..++...++|++|++++|.+...    +...+...++++.+++++|.+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            456666666665 3343222    12233455566666666655432    122233334444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.51  E-value=4.5e-05  Score=60.84  Aligned_cols=85  Identities=15%  Similarity=0.179  Sum_probs=38.7

Q ss_pred             CCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECC--CCcccc----c
Q 042271          372 NLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMP--NNNLEG----P  437 (517)
Q Consensus       372 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~--~~~~~~----~  437 (517)
                      ..++|++|++++|.+++..    ...+...++++.+++++|.+...    +...+...++|+.+++.  +|.+..    .
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            4555555555555554321    22334455666666666655432    12333444455544442  223321    1


Q ss_pred             ccccccCCCCccEEEccCC
Q 042271          438 IPIEFCQLNSLKILDLSNN  456 (517)
Q Consensus       438 ~~~~~~~~~~L~~L~l~~n  456 (517)
                      +...+...++|++|+++.+
T Consensus       124 La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCcCEEeCcCC
Confidence            2223344555555555444